Citrus Sinensis ID: 000307
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1690 | ||||||
| 255575080 | 1707 | hypothetical protein RCOM_0464910 [Ricin | 0.936 | 0.926 | 0.499 | 0.0 | |
| 357503097 | 1723 | hypothetical protein MTR_7g024000 [Medic | 0.919 | 0.901 | 0.404 | 0.0 | |
| 296086267 | 1570 | unnamed protein product [Vitis vinifera] | 0.534 | 0.575 | 0.522 | 0.0 | |
| 297823849 | 1566 | binding protein [Arabidopsis lyrata subs | 0.860 | 0.929 | 0.408 | 0.0 | |
| 240254612 | 1577 | uncharacterized protein [Arabidopsis tha | 0.857 | 0.918 | 0.395 | 0.0 | |
| 3355487 | 1567 | unknown protein [Arabidopsis thaliana] | 0.851 | 0.918 | 0.390 | 0.0 | |
| 359486637 | 2115 | PREDICTED: uncharacterized protein LOC10 | 0.396 | 0.316 | 0.621 | 0.0 | |
| 224100939 | 645 | predicted protein [Populus trichocarpa] | 0.349 | 0.916 | 0.603 | 0.0 | |
| 449483951 | 646 | PREDICTED: uncharacterized protein LOC10 | 0.376 | 0.984 | 0.533 | 0.0 | |
| 77556192 | 1696 | expressed protein [Oryza sativa Japonica | 0.676 | 0.673 | 0.356 | 0.0 |
| >gi|255575080|ref|XP_002528445.1| hypothetical protein RCOM_0464910 [Ricinus communis] gi|223532121|gb|EEF33928.1| hypothetical protein RCOM_0464910 [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1491 bits (3861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1690 (49%), Positives = 1088/1690 (64%), Gaps = 108/1690 (6%)
Query: 34 TVDIQPRNTTQSNSLKSFEQNRVTFKSNTPGWFPSSGKNDNLVISFSDDDSGSDTEDYRH 93
+VD+Q R + Q N+ KSFE+NRV KS GW G N NLVISFSDDD+GS++EDY+
Sbjct: 91 SVDVQSRLSLQPNNDKSFEKNRVPLKSANSGWHAPPGPNSNLVISFSDDDTGSESEDYKS 150
Query: 94 KTAFENKSNTTRVDGSGRPPTSS-AVKVKNLQQTARNVSKAIPKKLSPSRTL--TTTRNH 150
A E K T VD + RPP+S A K LQ TARNV+K +PKK S SRT TT+ +
Sbjct: 151 GKALEYKQKTAGVDSNQRPPSSLLAAKSNKLQLTARNVNKVMPKK-SLSRTFNSATTKIN 209
Query: 151 GGANSWVSRPPSVDQRSRVRNFSIKTK-LGSLECG-DQ-VGLRNSKLQDLRQQIALRESE 207
GGA+S + SVDQ SRVRNF+ + L + E G DQ +G+ N+KLQDLR QIALRE
Sbjct: 210 GGAHSRGAGSSSVDQISRVRNFNTTNRNLSNQEYGSDQGLGMNNAKLQDLRLQIALRERV 269
Query: 208 LKLKAAQQNKDLVIDSCENY-------HLGR-----------LDQKEPDKKRLKVSGSYS 249
LKLKAA QNK+ S +Y H R L+ KEPD KRLK+ GS
Sbjct: 270 LKLKAAHQNKESASVSGRDYSFVNLAAHATRTSNATSVRARELETKEPDNKRLKIMGST- 328
Query: 250 HRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSRIESEIVKWDKQNG 309
+L +D +Q+I A KST+P+KE +SL D + V R K P R ES IVK +Q
Sbjct: 329 -QLASDRQQEIHAVKSTIPLKEQALRSNSLLDRDMVHRGLKGSPTRRTESSIVKSKEQVD 387
Query: 310 KQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAER 369
K+V E++ S +K+ N N + Q+DR + +V L N+ SS LK
Sbjct: 388 KRVDTSSESLPSGLKEGVNVNVNRIQTDRCNMQVEP---------LTNIKSSVLLKYTNS 438
Query: 370 IE-SDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGPSFNNVHQ--VNTAS 426
+E + P + P SF + EQ++M E + I + G + N V Q ++ +
Sbjct: 439 VELNQPVKSGGHQPPGSFSKTTSGEQHLMSGGEDHEHILNGRRVGEALNKVCQASLDNGN 498
Query: 427 LGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRAL 486
N+ G NVS ++NVD+ SL++MEE LDKELEEAQE R ICEIEER ALKAYRKAQRAL
Sbjct: 499 PWNYFGALNVSAHNNVDMNSLVEMEESLDKELEEAQEQRHICEIEERNALKAYRKAQRAL 558
Query: 487 IEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPT 546
+EAN+ C +LY +REL SA FRS V++DS LLWS+ E +G + + + S N+ L P
Sbjct: 559 VEANSRCAELYHKRELYSAHFRSLVLNDSTLLWSTRNREHVGIALNHTDNGSRNLELMPP 618
Query: 547 STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRK 606
S+H + Y G NQ G+DS++QC +G + H NGQNLGSEPCSE DASTSE L
Sbjct: 619 SSHPERPDYDGRNQPGFDSNIQCASGAPLRTPYMHANGQNLGSEPCSEPDASTSEPLHLN 678
Query: 607 SKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNK 666
K ALN S SN+ SAD++EE LD E+VQPN++ QQ+++ + GRQ + + N
Sbjct: 679 CKTALNIGSSPSNDPNFSADDDEETSPLDHETVQPNYKIQQREESSVGRQKDSINQLNKI 738
Query: 667 LSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSN 726
S S D L LEATLRSELFARLG R SK+S S N++P+ E +ND GS++ Q SN
Sbjct: 739 SSDDCSPDSLTLEATLRSELFARLGRRNLSKNSSS-LNLDPADELGTENDNGSERTQTSN 797
Query: 727 GS-VPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTT 785
GS + S E++Q+ D+GG D+ ER I P IQ++ +K E+ S H
Sbjct: 798 GSFLVSEEERNQEFDLGGNDQHERNISGVPVNIQNQ---KKNDDEYFSICHL-------- 846
Query: 786 MNHSTSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQHNHGRNFEI-EEVACVNSDKTQA 843
S +++ SP +LR AFGH+K + + + + +E +N+++
Sbjct: 847 ---SATIIYSPNLVLRSAFGHMKDTFALTSTGFQSQKSERDDTCDCNDEAGSINTEEIDH 903
Query: 844 CYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADR 903
IAN + K G + GS+TCN +DP WPLCMYELRGKCNND+CPWQHV+ F++
Sbjct: 904 GITIANPMEESAKDVCGNDFGSFTCNFIVDPFWPLCMYELRGKCNNDQCPWQHVRDFSNG 963
Query: 904 N--KNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQS 961
N K+ HD SDS+ CQ+G T+ Q+ CN GT L +LT PTYIVGLDILK+DS+ + S
Sbjct: 964 NVGKHQHDTSDSSDCQVGLTLHQKKCNGGT-LPNSQCVLTAPTYIVGLDILKSDSHSFDS 1022
Query: 962 VIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLI--GDGRIECIGSWNRQSSFFRSRNG 1019
V+ +G CWQKC S+ +A+S++ KDLPAD + DGRIE +W++Q S+F+
Sbjct: 1023 VVTWGNGQCWQKCFSICIALSNLLQKDLPADEPFLHGSDGRIEVQKNWDKQLSYFQK--- 1079
Query: 1020 VLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI 1079
NKL +L +ALS+LSRA+EADP SEILWITYL I
Sbjct: 1080 --NKL----------FSHFFFLL-----------QALSVLSRAIEADPKSEILWITYLFI 1116
Query: 1080 FYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASD 1139
+Y N SV KDDMFSY+VKHN+ SY +WLMYINSRT L+ RL AY++AL+ LC SA +
Sbjct: 1117 YYGNVKSVAKDDMFSYAVKHNDRSYGVWLMYINSRTRLDDRLVAYESALTALCHQLSAYE 1176
Query: 1140 GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT 1199
DEM+ASACILD+FLQM+ CMSGN EKAIQ+I L AT S+ H L LSDIL LT
Sbjct: 1177 KDEMYASACILDMFLQMMDFLCMSGNVEKAIQKICGLFSVATNSDQCHCLLLSDILASLT 1236
Query: 1200 ISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1259
ISDK +FWVCCVYLV+YRKLP+AV+ EC+KEL AI+WP V L D++KQ A KLIEMA+
Sbjct: 1237 ISDKCMFWVCCVYLVMYRKLPEAVVHKFECDKELLAIEWPCVHLLDEDKQMATKLIEMAM 1296
Query: 1260 NSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVL 1319
N V+LY N ES+ E +LRS F + H C+A L+GLEC +LL++Y+KLYP+CLE VL
Sbjct: 1297 NFVKLYVNSESVVNEASLRSLQYFGLCHTRCVAALHGLECCRSLLDEYMKLYPACLEYVL 1356
Query: 1320 MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1379
+ R+Q D S GFEEAL WPK PGI CIWNQY+EYALQ G DFA + RWF
Sbjct: 1357 VSVRVQMTD-----SEGFEEALRNWPKEAPGIHCIWNQYIEYALQKGGPDFAKRVTVRWF 1411
Query: 1380 HSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1439
+S VQYSQ E D + SH+S E S + +F S+ N +D+MFGYLNLS+ +LL
Sbjct: 1412 NSFSVVQYSQKEKLDAIGTSSSHASLELASVENTDFLTSSSNHLDLMFGYLNLSIAKLLH 1471
Query: 1440 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRA 1499
ND EAR AID A KAAA F+HC+REHAM LL+N+S+ E A IS L +LN YLD A
Sbjct: 1472 NDQIEARNAIDKAFKAAAPPFFEHCLREHAMFLLMNDSQLNEDASISKCLNVLNGYLDDA 1531
Query: 1500 RSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKL 1559
R+ P + L R+FIN IE+PR++QLI VNLVLEV YGPSLLP+NF +
Sbjct: 1532 RAFPVSEPLSRRFINKIEKPRVKQLI-------------VNLVLEVWYGPSLLPQNFRQP 1578
Query: 1560 KDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1619
K+LVDFVE I+EIVPSNYQLAFS KLL+K N D S+L+WAS +LV++IFHA+
Sbjct: 1579 KELVDFVEAILEIVPSNYQLAFSACKLLSKGE--NFIDVPSGSMLYWASITLVNSIFHAI 1636
Query: 1620 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIV 1679
P+APEYVWV+AAG L +I+ IE I ERF+++ALSVYPFSIKLW CYY+LSKT+G +++
Sbjct: 1637 PIAPEYVWVDAAGFLDDIAGIELIYERFYRKALSVYPFSIKLWNCYYNLSKTRGHATSVL 1696
Query: 1680 KAAREKGIEL 1689
+AAREKGIEL
Sbjct: 1697 EAAREKGIEL 1706
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357503097|ref|XP_003621837.1| hypothetical protein MTR_7g024000 [Medicago truncatula] gi|355496852|gb|AES78055.1| hypothetical protein MTR_7g024000 [Medicago truncatula] | Back alignment and taxonomy information |
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Score = 1089 bits (2817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1740 (40%), Positives = 985/1740 (56%), Gaps = 186/1740 (10%)
Query: 36 DIQPRNTTQSNSLKSF-EQNRVTFKSNTPGWFPSSGKNDNLVISFSDDDSGSDTEDYRHK 94
+IQ R Q S K ++N++ KS+ W + ++NLVIS D
Sbjct: 82 NIQTRTAIQPISRKIIIKKNQLPPKSSP--WTGHASDDNNLVIS---------FSDDDSG 130
Query: 95 TAFENKSNTTRVDGSGRPPTSSAVKVK--NLQQTARNVSKAIPKKLSPSRTLTT--TRN- 149
+ ENK +R++ + + P+SS LQ+ AR++ P K RT T+ T+N
Sbjct: 131 SDIENKGTDSRLERNNKRPSSSLQNSNKLQLQKNARSLHNETPIKFPSKRTFTSSVTKNP 190
Query: 150 ---HGGANSWVSRPPSVDQRSRVRNF-SIKTKLGSLECG-DQVGLRN-SKLQDLRQQIAL 203
GA SW S+ Q R RNF S L S ECG DQ + N +KLQDLR QIAL
Sbjct: 191 SSISKGAGSW-----SLGQGPRARNFKSTNKTLASQECGRDQGAVSNDNKLQDLRHQIAL 245
Query: 204 RESELKLKAAQQNKD--LVI-----DSCENYHL------GRLDQKEPDKKRLKVSGSYSH 250
RESELKLKA QQ K+ LV+ + H+ +L+ K PD+KR+K+ S+
Sbjct: 246 RESELKLKAVQQMKESALVLGRDPKNDTTRKHIPVSSGAAQLEPKGPDRKRMKIDTSHDA 305
Query: 251 RLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSRIESEIVKWDKQNGK 310
G+Q +P KS +P K+ Q+ NKVD +QK+IP R ES I+K ++ G
Sbjct: 306 PQAVGGQQ-VPVVKSILPSKDSLCGNIYPQERNKVDHNQKEIPLCRGESIIIKSQRETGN 364
Query: 311 QVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAERI 370
+ +N+ ++ + N CNQ T + + + F+++
Sbjct: 365 HLSNSVQNMPCRSRE-GDVNYDCNQ----------------TDKSSRLVDPAFIQS---- 403
Query: 371 ESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGPSFNNVHQVNTASLGNF 430
S PAS+ N+ ++ A L
Sbjct: 404 -SMPASSVP-------------------------------------TNLEALSNAVLMTD 425
Query: 431 SGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEAN 490
+GN NVS +SN+D+QS +DMEEL+DK LEEAQEHR CEIEER A +AY KAQR+L+EAN
Sbjct: 426 NGNANVSEHSNIDLQSFIDMEELIDK-LEEAQEHRHNCEIEERNAYRAYVKAQRSLLEAN 484
Query: 491 ASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQ 550
A C LY QRE+ SA+ RS + S QH+ LG D + + PTS+
Sbjct: 485 ARCNDLYHQREVYSAKLRS------DFSLSLRQHQQLGIGLDYLPKLGYEI---PTSSCL 535
Query: 551 MQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNA 610
Q+ Y N +DS+ Q IN + S H+NG NLGSEPC E DASTSE ++ +A
Sbjct: 536 RQAEY-NINNPSFDSNDQGINNRHSDTSCHHKNGANLGSEPCIEPDASTSEPFSQRGNHA 594
Query: 611 LNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAV 670
+G+ +E+ S +E EE S + EY++K Q ++ +QI D N S
Sbjct: 595 ADGVYSPMDEVDTSDNENEEISLAGHTSNNLDAEYRRK-QDSKAKQIDLDTASNADYSTG 653
Query: 671 SSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVP 730
S QD LLLEATLRSELFARLG R K + C N E + E A+N++GS+K ++ +G+VP
Sbjct: 654 SPQDSLLLEATLRSELFARLGKRA-KKSNIPCNNFE-TAEPGAENEVGSEKNRVHHGTVP 711
Query: 731 SSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFH-STYHSKGNKFPTTMNHS 789
++ +D+ G ++ ER I +IQ + + + + S P+ + HS
Sbjct: 712 LIN--AENNDLKGNERKERNIHMDSDEIQSQQNIGANTVNTNCSAGLGDQGDMPSQVYHS 769
Query: 790 TSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQH--NHGRNFEIEEVACVNSDKTQACYL 846
T+ + PP I R AF L+ +L NQ NQ+ H + + + C++SD+ + L
Sbjct: 770 TNPVNIPPLIFRSAFSELREMSPFSL-NQLPNQNKSGHDNDGQSQNATCLSSDEAKRSML 828
Query: 847 IANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRN-- 904
+ I G E GSY C+ +DP WPLCMYELRGKCNNDECPWQH K + D N
Sbjct: 829 AISMAVTI--GNSLSEEGSYGCSPEVDPFWPLCMYELRGKCNNDECPWQHAKDYGDGNIT 886
Query: 905 KNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIA 964
++ H D+++ Q S + +++CN TK++K H PTY+V LD+LKAD + Y+ + A
Sbjct: 887 QHQHTDTNNGDSQDRSPLHEQNCNGVTKVTKYHKATILPTYLVSLDVLKADQFAYKPIAA 946
Query: 965 RRHGLCWQKCLSVSLAISSIYPKDLPAD--LSLIGDGRIECIGSWNRQSSFFRSRNGV-- 1020
R WQK S++LA S++ D LS GD RIE G+W++Q SF + RNGV
Sbjct: 947 HRIAQHWQKHFSITLATSNLLQNGSAEDGPLSHGGDERIEVRGTWSKQLSF-QWRNGVGA 1005
Query: 1021 ------------------------------------------------LNKLKQVELSNE 1032
LN++KQ +E
Sbjct: 1006 YKLEREREREREREATRANLVLHYKGQLSSKDSCHLTHYWVLNSHIVFLNQIKQAMTDSE 1065
Query: 1033 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1092
Q VEMALLILNQ+ NK++G++KALS+LS+ALE +PTS ++WI Y LI+Y + K+DM
Sbjct: 1066 QAVEMALLILNQEINKMQGVRKALSVLSKALETNPTSVVIWIVYSLIYYGSFGPNEKEDM 1125
Query: 1093 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL 1152
F Y+VK EGSY LWLMYINSR L+ R+ AYD+A+S LCR ASA+ D+ SACILDL
Sbjct: 1126 FLYAVKLYEGSYVLWLMYINSRRKLDDRIAAYDSAISALCRHASAAPEDKTCESACILDL 1185
Query: 1153 FLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-RHSLFLSDILTCLTISDKLIFWVCCV 1211
FLQM+ C CMS N E AIQR S + PAT +D + L LSD+L CLT+SDK + WVCCV
Sbjct: 1186 FLQMMDCLCMSRNVENAIQR-SYGVFPATTKSDVPNLLSLSDLLNCLTVSDKCVLWVCCV 1244
Query: 1212 YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1271
YLVIYRKLP A++Q EC K++ I+WP V L +DEK+RA+KL+E A + S ++
Sbjct: 1245 YLVIYRKLPGAIVQNFECTKDILDIEWPIVSLSEDEKERAVKLMETAAEYIN--SRAFTM 1302
Query: 1272 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1331
E E +L+ A FA+NH+ L+ +EC+ +L ++Y+KLYP C+ELVL+ A++QK D G
Sbjct: 1303 ESEDDLKCAQHFALNHLRFRVALDRIECARSLFDRYVKLYPFCIELVLVSAQIQKQDLGV 1362
Query: 1332 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVE 1391
+ + FE+ + +WPK VPGIQCIWNQY+ A+ N R D A E+ RWFHS WKVQ
Sbjct: 1363 GNFMVFEDTISRWPKIVPGIQCIWNQYIANAIHNQRMDLAKEITVRWFHSAWKVQDPPYG 1422
Query: 1392 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA 1451
+D S S + S S QMD+MFGYLNLS++ Q D EA +A++
Sbjct: 1423 GTDATDDGNSCGLVGLGSKFVSDTSNSGHKQMDMMFGYLNLSIYHFFQEDKTEASIAVNK 1482
Query: 1452 ALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLD-RARSLPYLKLLPR 1510
A +R++ M ++ + S EG P S ++L Y+D +++L + L R
Sbjct: 1483 ARDTVGFAGLDQYIRKYVMFMVCDASSLNEGDPESVVKRMLEVYMDGSSQALLAPRALTR 1542
Query: 1511 QFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIM 1570
+F+++I++PR+Q LIDN+L PVS D S++NL+L+ +G SLLP+ S K LVDFVE IM
Sbjct: 1543 KFLDSIKKPRVQNLIDNILRPVSFDCSVLNLMLQSWFGSSLLPQTVSDPKLLVDFVERIM 1602
Query: 1571 EIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEA 1630
E+VP N+QLA +V KLL+KD++ +D S+ FW+ S+LV+AI A+P+ PEYVWVEA
Sbjct: 1603 EVVPHNFQLAIAVCKLLSKDYSS--SDLNSTSLQFWSCSTLVNAITGAIPIPPEYVWVEA 1660
Query: 1631 AGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD 1690
A L + IE IS+RF+K+ALSVYPFSI LWKCYY L + GD N+I++ A+E+GI LD
Sbjct: 1661 AAFLQSAMGIEAISQRFYKKALSVYPFSIMLWKCYYKLFLSNGDANSIIEEAKERGINLD 1720
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086267|emb|CBI31708.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1035 (52%), Positives = 664/1035 (64%), Gaps = 131/1035 (12%)
Query: 664 NNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQ 723
N K + S +D LLLEATLRSELFARLG+RT SK+SG +++EP+V++ ++++G DK Q
Sbjct: 659 NTKFATDSPEDSLLLEATLRSELFARLGVRTLSKNSGHDYDIEPAVDREVEDNVGRDKTQ 718
Query: 724 MSNGSVP-SSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVE-KGLLEFHSTYHSKGNK 781
M ++P S E++QQ D+GG +PE I E P +I +C + G EF T K +K
Sbjct: 719 MRMRNIPFSDAEKTQQLDLGGAGRPETSISEIPVEIDRQCYEKFSGNNEFQPTDDPK-DK 777
Query: 782 FPTTMNH--STSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNS 838
F H +TSV SPP +LR AFGH+K
Sbjct: 778 FSKREVHQSTTSVTFSPPFVLRSAFGHMK------------------------------- 806
Query: 839 DKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVK 898
LI +S D V+ G E GSYTCNLA+DP WPLCMYELRGKCNN+EC WQHVK
Sbjct: 807 ----VTSLITSSTLDTVRDGFG-EAGSYTCNLAVDPFWPLCMYELRGKCNNEECVWQHVK 861
Query: 899 YFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQ 958
+ + N N HD+SD+A +G L + +
Sbjct: 862 DYTNNNMNQHDESDNADWHLG--------------------------------LSSHQGK 889
Query: 959 YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLI--GDGRIECIGSWNRQSSFFRS 1016
+++ + C QKC S LA+SS+ KD P D L DGR+E GSWNRQS + +
Sbjct: 890 FEAWCISQ---CGQKCFSTILAVSSLLQKDFPVDQPLYHGSDGRLEVHGSWNRQSLYIQP 946
Query: 1017 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY 1076
RNGV+ L + S +EMALL+LNQ+ NK+EGMKKALS+LSRALEADPTS LWI Y
Sbjct: 947 RNGVVVCLLILFYS----LEMALLVLNQEVNKVEGMKKALSVLSRALEADPTSVALWIVY 1002
Query: 1077 LLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1136
LLI+YS+ ++GKDDMF Y++KH EGSY LWLM+INSR L+ RL AYD ALS LCR AS
Sbjct: 1003 LLIYYSSQKTIGKDDMFIYAIKHTEGSYELWLMFINSRAQLDERLVAYDTALSALCRHAS 1062
Query: 1137 ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT 1196
ASD D HASACILDLFLQM+ C CMS N KAIQRI LL AT S++ HSL LSDILT
Sbjct: 1063 ASDRDAKHASACILDLFLQMMGCLCMSRNIRKAIQRIYGLLPSATNSDEPHSLSLSDILT 1122
Query: 1197 CLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256
CLTI+DK IFWVCCVYLVIYRKLPD ++Q ECEKE FAI WP V L DEKQ+A+KL+
Sbjct: 1123 CLTITDKCIFWVCCVYLVIYRKLPDDIVQRFECEKEFFAISWPSVCLRADEKQQALKLMG 1182
Query: 1257 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLE 1316
AVNSVE Y + ESL+ ET LRSA FA+NH+ C+ + LEC NLL+KY KLYPSCLE
Sbjct: 1183 TAVNSVESYFDNESLQSETTLRSAQLFALNHVRCVVAVESLECGRNLLDKYTKLYPSCLE 1242
Query: 1317 LVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMD 1376
LVL+ A+ QKHDFG L+ GFE+AL WPK PGIQCIW+QY EYAL+NG D A E+M
Sbjct: 1243 LVLISAQTQKHDFGGLNFGGFEDALSNWPKESPGIQCIWSQYAEYALRNGSFDVAKEIMS 1302
Query: 1377 RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR 1436
RW++SVWKVQ Q + D S S ES S+ + SV ++MD MFG LNLSL+R
Sbjct: 1303 RWYNSVWKVQCPQNDSLSGTDGDNSCCSLESALASNLDISVLGSSKMDAMFGLLNLSLYR 1362
Query: 1437 LLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYL 1496
L QND EAR+ ID +LK AA E+FKHCVREHAM +L +
Sbjct: 1363 LFQNDLTEARMIIDKSLKTAAPEYFKHCVREHAMFMLTDG-------------------- 1402
Query: 1497 DRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNF 1556
+QQLI N+LSP+SSDFSL+NLVLEV +G SLLP+
Sbjct: 1403 ------------------------VQQLISNMLSPMSSDFSLLNLVLEVWHGQSLLPQES 1438
Query: 1557 SKLKDLVDFVEGIMEIVPSNYQLAFSVFK-LLNKDHNPNITDAVPESVLFWASSSLVSAI 1615
SKLKDLVDFVE IMEI P NYQLA S K LL++ H+ A SVLFW SS L++AI
Sbjct: 1439 SKLKDLVDFVEAIMEISPCNYQLAMSACKQLLSRGHSSGDASA---SVLFWGSSLLINAI 1495
Query: 1616 FHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL 1675
A+PVAPE++WVEAAGIL N+ + +S F KRALS+YPFSI+LWK Y LSK G++
Sbjct: 1496 SQAIPVAPEFIWVEAAGILDNLMDNQVLSLNFHKRALSLYPFSIRLWKSYLMLSKITGNM 1555
Query: 1676 NTIVKAAREKGIELD 1690
+++V AA+EKGIELD
Sbjct: 1556 DSVVAAAKEKGIELD 1570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823849|ref|XP_002879807.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325646|gb|EFH56066.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/1642 (40%), Positives = 917/1642 (55%), Gaps = 187/1642 (11%)
Query: 66 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 125
FP+ G N NLVI+FSDDDSGS+++ R +T N + + G+ P T S K+K +Q
Sbjct: 95 FPARGNNSNLVINFSDDDSGSESDGNR-RTQTSNIQSKGTMSGNRNPSTFSQTKLKGPRQ 153
Query: 126 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQRSRVRNF--SIKTKLGSLEC 183
T ++AI KK P T+T +H A S VS S + +N S +T
Sbjct: 154 TD---NRAITKKPLP----TSTFSHA-ATSKVSNLSSAKEMKANKNIHTSERTVSKDTRL 205
Query: 184 GDQ-VGLRNSKLQDLRQQIALRESELKLKAAQQNKDLV---IDSCENYHL-----GRLDQ 234
+Q V N KLQDL+QQIALRESELKLKAAQ KD + I + +L+
Sbjct: 206 PEQIVNPNNIKLQDLKQQIALRESELKLKAAQPKKDAINPKISPARRVSIISDDTRQLEP 265
Query: 235 KEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPR 294
EP KKRLKVSG + + TD R +PA+ + P+ P DI +
Sbjct: 266 NEPAKKRLKVSGIDTSQPVTDYR--VPAS-AAAPMDVP------------------DIRK 304
Query: 295 SRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQ 354
S + N N SC +S + PV+ +
Sbjct: 305 SLLPG---------------------------VNANPSCKHLGSNSDEI-VPPVVSQHTV 336
Query: 355 LANMTSSNFLKNAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGP 414
N +SS K+A + A C+ RE M+NS T D
Sbjct: 337 EGNTSSSVVQKSAGK---------ANCY------EGGRELETMKNSMETIRFFLDP-QIM 380
Query: 415 SFNNVHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERK 474
++ + +N + L N GN G+S +D+ SL ++EE LDKELEEAQE +R+CEIEER
Sbjct: 381 TWRQLSCLNNSGLWNIPGNTTAPGHSQLDMLSLTNLEESLDKELEEAQERKRLCEIEERN 440
Query: 475 ALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLS 534
ALK YRKAQR+LIEANA C +LY +RE+ SA + S ++ DS LLW S E+ F
Sbjct: 441 ALKVYRKAQRSLIEANARCAELYSKREILSAHYGSLLVRDSRLLWPSIHGESPETGFHFL 500
Query: 535 KHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSE 594
+ +GN+ LA T T Q + N Y+S G Q H +GQNLGSEP S+
Sbjct: 501 NNSTGNIDLA-TKTDIAQHTQLESNH-RYNSDC----GGSQPPPHS-RSGQNLGSEPYSD 553
Query: 595 QDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEG 654
ASTS+ LP +K + + S++ + D +E+ +D ES + N +Q +
Sbjct: 554 LGASTSDGLPCSNKQTASRLCSPSSDANILPD--DESFPVDHESTEGNLGHQTE------ 605
Query: 655 RQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRAD 714
N + +Q+ LLLEA+LRS+LF LGMR SK +CFN E +++ +
Sbjct: 606 ----------NLDQTLGNQNALLLEASLRSKLFEHLGMRAESKGV-TCFNGETVIDRGDE 654
Query: 715 NDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHST 774
D+ S++ Q +GS S Q G +K + EAP + + + EF S+
Sbjct: 655 RDVASERTQRDDGSPFSEIYQHNDSREPGANKLQGNPSEAPVE-------RRSIEEFQSS 707
Query: 775 YHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVA 834
+ ++ + +SV LS P+ R HLK + + G + ++ +
Sbjct: 708 VDMESHRSSPENDLLSSVALSGPLFRSTIYHLKVP--------GSSITSLGPEYTLQNKS 759
Query: 835 -CVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECP 893
+ SDK Q L + + ++G YTCNL +DP WPLCMYELRG+CNNDECP
Sbjct: 760 YSLYSDKRQCRSLTQTTVYET-------KIGCYTCNLKVDPSWPLCMYELRGRCNNDECP 812
Query: 894 WQHVKYFADR--NKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDI 951
WQH K F+D +++LHD D ++GS+ Q+ N +K S+ D + PTY+V LD
Sbjct: 813 WQHFKDFSDDSLHQSLHDPPDG---RVGSSSHQKKHN-SSKGSQILDTVVSPTYLVSLDT 868
Query: 952 LKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQS 1011
+K DS+ Y+SV+A+RHG W K S LA S+ +++PA + +GRIE +G+ S
Sbjct: 869 MKVDSWSYESVLAQRHGQIWWKHFSACLASSNSLYRNVPAKEN---EGRIEVLGNSKTYS 925
Query: 1012 SFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI 1071
S+FR ++ ++ ALSLLS+ LE DPTSEI
Sbjct: 926 SYFRIKHSLM---------------------------------ALSLLSQCLEGDPTSEI 952
Query: 1072 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVL 1131
LW YLLI++ S GK DMFSY VKH+ SY +WLMYI+SR LN + AYDAALS L
Sbjct: 953 LWTVYLLIYHVYEGSDGK-DMFSYGVKHSSRSYVIWLMYISSRGQLNDQFFAYDAALSAL 1011
Query: 1132 CRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1191
C AS S D HASACILD+ LQM C+SGN KAIQR S+L PA S+D +
Sbjct: 1012 CNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRTSKLQAPAAVSDDPDFSLM 1070
Query: 1192 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA 1251
S ILTCLT SDK +FWVCCVYLVIYRKLPD+++Q LE EKEL I+WP V L+ D KQ A
Sbjct: 1071 SHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIVQRLEMEKELLEIEWPSVNLDGDVKQMA 1130
Query: 1252 IKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY 1311
++L + + SVE +NG S E R A FA+NH M ++ LE ++L+ +KLY
Sbjct: 1131 LRLFDKGMRSVEHCTNGLS-ENGIQKRPAGLFALNHALFMVAVDELESCRDILKASVKLY 1189
Query: 1312 PSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1371
P+CLEL L+ R+Q + D+ S GFEE L + K IQCIWNQY EYALQ G +D A
Sbjct: 1190 PTCLELKLLAVRMQSKELKDMFSSGFEELLKQEAKEASCIQCIWNQYAEYALQGGSYDLA 1249
Query: 1372 AELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLN 1431
ELM RW+ SVW V + + ++A+ ++ + +V++ +Q+DVMFGYLN
Sbjct: 1250 RELMSRWYVSVWDVLSHK---NKTVLANEEEGDDSLLESALSDLNVAS-DQVDVMFGYLN 1305
Query: 1432 LSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKL 1491
LSLH LLQ++W ARLAID ALKA A EHF +C+REHA+ LI+E + I+ Q++L
Sbjct: 1306 LSLHNLLQSNWTGARLAIDQALKATAPEHFMYCLREHAVFQLIDELQATGEFSINLQMRL 1365
Query: 1492 LNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPS 1550
LNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+PVSS+ +VN+VLE +GPS
Sbjct: 1366 LNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAPVSSELLVVNVVLEAWHGPS 1425
Query: 1551 LLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSS 1610
L+P SK K+LVDFVE I+ +VP NY LA SV KLL K+ + + + + FWA +
Sbjct: 1426 LVPEKLSKQKELVDFVETILGLVPCNYPLALSVSKLLRKEEKHSDSGS-SSGIHFWAGLN 1484
Query: 1611 LVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSK 1670
LVS I A+PVAPEY+WVEA I+ NI+ + +ERF K+ALSVYP S+KLW+CY L K
Sbjct: 1485 LVSTISCAIPVAPEYIWVEAGEIVSNINGFKTRAERFLKKALSVYPMSVKLWRCYRSLCK 1544
Query: 1671 T--KGDLNTIVKAAREKGIELD 1690
+ + I +AA +KGI LD
Sbjct: 1545 SIEERRGIEIEEAAIKKGITLD 1566
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254612|ref|NP_181490.5| uncharacterized protein [Arabidopsis thaliana] gi|330254602|gb|AEC09696.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/1660 (39%), Positives = 905/1660 (54%), Gaps = 211/1660 (12%)
Query: 66 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 125
FP G N NLVI+FSDDDS D + +T + G+ P T S K+K +Q
Sbjct: 92 FPVRGNNSNLVINFSDDDS-GSESDCKGRTQTSKIQPKGTISGNRNPSTFSQTKLKGPRQ 150
Query: 126 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQ--RSRVRNFSIKTKLGSLEC 183
+AI KK L+T+ A S VS + ++ + S +T +
Sbjct: 151 ID---IRAITKK-----ALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQR 202
Query: 184 GDQVGLRNS-KLQDLRQQIALRESELKLKAAQQNKDLV-----------IDSCENYHLGR 231
+Q+ NS KLQDL+QQIALRESELKLKAAQ KD V I S + HL
Sbjct: 203 PEQIVESNSNKLQDLKQQIALRESELKLKAAQPKKDAVNPKITPARRVSIISDDTRHL-- 260
Query: 232 LDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKD 291
+ EP KKRLKVSG + + D R A + P+ P D
Sbjct: 261 -EPNEPPKKRLKVSGIDTSQPVIDYRV---AASAAAPMNAP------------------D 298
Query: 292 IPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHN 351
I +S + N N+SC S + PV+
Sbjct: 299 IRKSLLPG---------------------------VNANSSCKHLGSKSDEI-VPPVIPQ 330
Query: 352 TSQLANMTSSNFLKNAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK- 410
+ N +SS K+ ++ + G + N R + + + K ++G+
Sbjct: 331 HTVEGNTSSSVLQKSTGKV-----NHYEGGRELETMKNVDRS---VSSEQLLKIVNGNHQ 382
Query: 411 -IDGPSFNNVHQV---NTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRR 466
S NN ++ N + L N G+ V G+S +D+ SL ++EE LDKELEEAQE +R
Sbjct: 383 VFSRSSNNNWKRLPCSNNSGLYNIPGSTTVPGHSQLDMLSLTNLEESLDKELEEAQERKR 442
Query: 467 ICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHET 526
+ EIEER ALK YRKAQR+LIEANA C +LY +RE+ SA + S ++ DS LLW S E
Sbjct: 443 LFEIEERNALKVYRKAQRSLIEANARCAELYSKREILSAHYGSLIVRDSRLLWPSIHGEN 502
Query: 527 LGNEFDLSKHVSGNMHLAPT----------STHQMQSGYVGYNQGGYDSSMQCINGDLQN 576
F + +G++ LA S H+ S YVG + + S
Sbjct: 503 PETGFHFLNNSTGSIDLATKTDIAQHSQLESNHKYNSEYVGSHPPPHSRS---------- 552
Query: 577 FSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDL 636
GQNLG S+ ASTS+ LP +K + + S++ + D+E + +D
Sbjct: 553 -------GQNLG---YSDLGASTSDGLPCGNKQTASRLCSPSSDANILPDDE--SFPVDH 600
Query: 637 ESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFS 696
ES + N +Q++ N + +Q+ LLLEA+LRS+LF RLGMR S
Sbjct: 601 ESTEGNPGHQKE----------------NIDQTLGNQNALLLEASLRSKLFDRLGMRAES 644
Query: 697 KDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 756
+ G+CFN E +++ + D GS+ Q NGS S G +K + EAP
Sbjct: 645 R-GGTCFNEETVIDRGDERDFGSEGTQRDNGSPFSEIYLHNDSLEPGANKLQGSPSEAPV 703
Query: 757 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSN 816
+ + +E+ L + + + ++ +SV LS P+ R HLK
Sbjct: 704 ERRS---IEENSLNYQLSIDMESHRSSPENALLSSVALSGPLFRSTIYHLKVP------- 753
Query: 817 QSGNQHNHGRNFEIE-EVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPL 875
+ + G + ++ + + SDK Q L IV K++G YTCNL +DP
Sbjct: 754 -GSSITSLGPEYILQNKTYSLYSDKRQCRSLTET----IV---YEKKIGFYTCNLKVDPS 805
Query: 876 WPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSK 935
WPLCMYELRG+CNNDEC WQH K F+D +LH ++GS+ Q+ N +K S+
Sbjct: 806 WPLCMYELRGRCNNDECSWQHFKDFSD--DSLHQSLHDPDGRVGSSSHQKTHN-SSKGSQ 862
Query: 936 GHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSL 995
D + PTY+V LD +K DS+ Y+SV+A+RHG W K S LA S+ +++PA +
Sbjct: 863 ILDSVFSPTYLVSLDTMKVDSWSYESVLAQRHGQIWCKHFSACLASSNSLYRNVPAKEN- 921
Query: 996 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKA 1055
+GRI +G+ SS+FR ++ ++ + Q A
Sbjct: 922 --EGRIVVLGNSKTYSSYFRIKHSLMWHIFQ----------------------------A 951
Query: 1056 LSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRT 1115
LSLLS+ LE DPTSEILW YLLI+++ S GKD MFSY VKH+ SY +WLMYINSR
Sbjct: 952 LSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINSRG 1010
Query: 1116 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1175
LN +L AYD ALS LC AS S D HASACILD+ LQM C+SGN KAIQRIS+
Sbjct: 1011 QLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRISK 1069
Query: 1176 LLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFA 1235
L PA S+D +S ILTCLT SDK +FWVCCVYLVIYRKLPD++++ LE EKEL
Sbjct: 1070 LQAPAAVSDDPDFSLMSHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIIRRLEMEKELLE 1129
Query: 1236 IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN 1295
I+WP V L+ D KQ A++L + + SVE +N ++K R A FA+N+ M ++
Sbjct: 1130 IEWPTVNLDGDLKQMALRLFDKGMRSVEHGTNN-GIQK----RPAGLFALNYALFMIAVD 1184
Query: 1296 GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIW 1355
LE ++L+ ++LYP+CLEL L+ R+Q ++ D+ S GFEE L + K IQCIW
Sbjct: 1185 ELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQCIW 1244
Query: 1356 NQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMSHSSPESTSTSD 1412
NQY EYAL+ G +D A ELM RW+ SVW V +Y V ++ D S S
Sbjct: 1245 NQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDDNMLESALS----- 1299
Query: 1413 PEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLL 1472
+ +V++ +Q+DVMFGYLNLSLH LLQ++W EARLAID ALKA A EHF HC+REHA+
Sbjct: 1300 -DLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAVFQ 1357
Query: 1473 LINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSP 1531
LINE + I+ Q++LLNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+P
Sbjct: 1358 LINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAP 1417
Query: 1532 VSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDH 1591
VSS+ +VN+VLE +GPSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K+
Sbjct: 1418 VSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRKEE 1477
Query: 1592 NPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRA 1651
+ + + + FWA +L S I A+PVAPEY+WVEA I+ +I+ + +ERF K+A
Sbjct: 1478 KQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLKKA 1536
Query: 1652 LSVYPFSIKLWKCYYDLSKT--KGDLNTIVKAAREKGIEL 1689
LSVYP S+KLW+CY+ L K+ + I +AAR+KGI L
Sbjct: 1537 LSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1576
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3355487|gb|AAC27849.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/1660 (39%), Positives = 895/1660 (53%), Gaps = 221/1660 (13%)
Query: 66 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 125
FP G N NLVI+FSDDDS D + +T + G+ P T S K+K +Q
Sbjct: 92 FPVRGNNSNLVINFSDDDS-GSESDCKGRTQTSKIQPKGTISGNRNPSTFSQTKLKGPRQ 150
Query: 126 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQ--RSRVRNFSIKTKLGSLEC 183
+AI KK L+T+ A S VS + ++ + S +T +
Sbjct: 151 ID---IRAITKK-----ALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQR 202
Query: 184 GDQVGLRNS-KLQDLRQQIALRESELKLKAAQQNKDLV-----------IDSCENYHLGR 231
+Q+ NS KLQDL+QQIALRESELKLKAAQ KD V I S + HL
Sbjct: 203 PEQIVESNSNKLQDLKQQIALRESELKLKAAQPKKDAVNPKITPARRVSIISDDTRHL-- 260
Query: 232 LDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKD 291
+ EP KKRLKVSG + + D R A + P+ P D
Sbjct: 261 -EPNEPPKKRLKVSGIDTSQPVIDYRV---AASAAAPMNAP------------------D 298
Query: 292 IPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHN 351
I +S + N N+SC S + PV+
Sbjct: 299 IRKSLLPG---------------------------VNANSSCKHLGSKSDEI-VPPVIPQ 330
Query: 352 TSQLANMTSSNFLKNAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK- 410
+ N +SS K+ ++ + G + N R + + + K ++G+
Sbjct: 331 HTVEGNTSSSVLQKSTGKV-----NHYEGGRELETMKNVDRS---VSSEQLLKIVNGNHQ 382
Query: 411 -IDGPSFNNVHQV---NTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRR 466
S NN ++ N + L N G+ V G+S +D+ SL ++EE LDKELEEAQE +R
Sbjct: 383 VFSRSSNNNWKRLPCSNNSGLYNIPGSTTVPGHSQLDMLSLTNLEESLDKELEEAQERKR 442
Query: 467 ICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHET 526
+ EIEER ALK YRKAQR+LIEANA C +LY +RE+ SA + S ++ DS LLW S E
Sbjct: 443 LFEIEERNALKVYRKAQRSLIEANARCAELYSKREILSAHYGSLIVRDSRLLWPSIHGEN 502
Query: 527 LGNEFDLSKHVSGNMHLAPT----------STHQMQSGYVGYNQGGYDSSMQCINGDLQN 576
F + +G++ LA S H+ S YVG + + S
Sbjct: 503 PETGFHFLNNSTGSIDLATKTDIAQHSQLESNHKYNSEYVGSHPPPHSRS---------- 552
Query: 577 FSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDL 636
GQNLG S+ ASTS+ LP +K + + S++ + D+E + +D
Sbjct: 553 -------GQNLG---YSDLGASTSDGLPCGNKQTASRLCSPSSDANILPDDE--SFPVDH 600
Query: 637 ESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFS 696
ES + N +Q++ N + +Q+ LLLEA+LRS+LF RLGMR S
Sbjct: 601 ESTEGNPGHQKE----------------NIDQTLGNQNALLLEASLRSKLFDRLGMRAES 644
Query: 697 KDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 756
+ G+CFN E +++ + D GS+ Q NGS S G +K + EAP
Sbjct: 645 R-GGTCFNEETVIDRGDERDFGSEGTQRDNGSPFSEIYLHNDSLEPGANKLQGSPSEAPV 703
Query: 757 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSN 816
+ + +E+ L + + + ++ +SV LS P+ R HLK
Sbjct: 704 ERRS---IEENSLNYQLSIDMESHRSSPENALLSSVALSGPLFRSTIYHLKVP------- 753
Query: 817 QSGNQHNHGRNFEIE-EVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPL 875
+ + G + ++ + + SDK Q L IV K++G YTCNL +DP
Sbjct: 754 -GSSITSLGPEYILQNKTYSLYSDKRQCRSLTET----IV---YEKKIGFYTCNLKVDPS 805
Query: 876 WPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSK 935
WPLCMYELRG+CNNDEC WQH K F+D +LH ++GS+ Q+ N +K S+
Sbjct: 806 WPLCMYELRGRCNNDECSWQHFKDFSD--DSLHQSLHDPDGRVGSSSHQKTHN-SSKGSQ 862
Query: 936 GHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSL 995
D + PTY+V LD +K DS+ Y+SV+A+RHG W K S LA S+ +++PA +
Sbjct: 863 ILDSVFSPTYLVSLDTMKVDSWSYESVLAQRHGQIWCKHFSACLASSNSLYRNVPAKEN- 921
Query: 996 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKA 1055
+GRI +G+ SS+FR ++ ++ + Q A
Sbjct: 922 --EGRIVVLGNSKTYSSYFRIKHSLMWHIFQ----------------------------A 951
Query: 1056 LSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRT 1115
LSLLS+ LE DPTSEILW YLLI+++ S GKD MFSY VKH+ SY +WLMYINSR
Sbjct: 952 LSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINSRG 1010
Query: 1116 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1175
LN +L AYD ALS LC AS S D HASACILD+ LQM C+SGN KAIQRIS+
Sbjct: 1011 QLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRISK 1069
Query: 1176 LLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFA 1235
L PA S+D +S ILTCLT SDK I YRKLPD++++ LE EKEL
Sbjct: 1070 LQAPAAVSDDPDFSLMSHILTCLTYSDKFI----------YRKLPDSIIRRLEMEKELLE 1119
Query: 1236 IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN 1295
I+WP V L+ D KQ A++L + + SVE +N ++K R A FA+N+ M ++
Sbjct: 1120 IEWPTVNLDGDLKQMALRLFDKGMRSVEHGTNN-GIQK----RPAGLFALNYALFMIAVD 1174
Query: 1296 GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIW 1355
LE ++L+ ++LYP+CLEL L+ R+Q ++ D+ S GFEE L + K IQCIW
Sbjct: 1175 ELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQCIW 1234
Query: 1356 NQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMSHSSPESTSTSD 1412
NQY EYAL+ G +D A ELM RW+ SVW V +Y V ++ D S S
Sbjct: 1235 NQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDDNMLESALS----- 1289
Query: 1413 PEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLL 1472
+ +V++ +Q+DVMFGYLNLSLH LLQ++W EARLAID ALKA A EHF HC+REHA+
Sbjct: 1290 -DLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAVFQ 1347
Query: 1473 LINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSP 1531
LINE + I+ Q++LLNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+P
Sbjct: 1348 LINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAP 1407
Query: 1532 VSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDH 1591
VSS+ +VN+VLE +GPSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K+
Sbjct: 1408 VSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRKEE 1467
Query: 1592 NPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRA 1651
+ + + + FWA +L S I A+PVAPEY+WVEA I+ +I+ + +ERF K+A
Sbjct: 1468 KQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLKKA 1526
Query: 1652 LSVYPFSIKLWKCYYDLSKT--KGDLNTIVKAAREKGIEL 1689
LSVYP S+KLW+CY+ L K+ + I +AAR+KGI L
Sbjct: 1527 LSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486637|ref|XP_002279244.2| PREDICTED: uncharacterized protein LOC100253034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/674 (62%), Positives = 504/674 (74%), Gaps = 4/674 (0%)
Query: 1018 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYL 1077
NG N++KQ N Q +EMALL+LNQ+ NK+EGMKKALS+LSRALEADPTS LWI YL
Sbjct: 1445 NGGPNQIKQGLADNVQSLEMALLVLNQEVNKVEGMKKALSVLSRALEADPTSVALWIVYL 1504
Query: 1078 LIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1137
LI+YS+ ++GKDDMF Y++KH EGSY LWLM+INSR L+ RL AYD ALS LCR ASA
Sbjct: 1505 LIYYSSQKTIGKDDMFIYAIKHTEGSYELWLMFINSRAQLDERLVAYDTALSALCRHASA 1564
Query: 1138 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC 1197
SD D HASACILDLFLQM+ C CMS N KAIQRI LL AT S++ HSL LSDILTC
Sbjct: 1565 SDRDAKHASACILDLFLQMMGCLCMSRNIRKAIQRIYGLLPSATNSDEPHSLSLSDILTC 1624
Query: 1198 LTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM 1257
LTI+DK IFWVCCVYLVIYRKLPD ++Q ECEKE FAI WP V L DEKQ+A+KL+
Sbjct: 1625 LTITDKCIFWVCCVYLVIYRKLPDDIVQRFECEKEFFAISWPSVCLRADEKQQALKLMGT 1684
Query: 1258 AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 1317
AVNSVE Y + ESL+ ET LRSA FA+NH+ C+ + LEC NLL+KY KLYPSCLEL
Sbjct: 1685 AVNSVESYFDNESLQSETTLRSAQLFALNHVRCVVAVESLECGRNLLDKYTKLYPSCLEL 1744
Query: 1318 VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377
VL+ A+ QKHDFG L+ GFE+AL WPK PGIQCIW+QY EYAL+NG D A E+M R
Sbjct: 1745 VLISAQTQKHDFGGLNFGGFEDALSNWPKESPGIQCIWSQYAEYALRNGSFDVAKEIMSR 1804
Query: 1378 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL 1437
W++SVWKVQ Q + D S S ES S+ + SV ++MD MFG LNLSL+RL
Sbjct: 1805 WYNSVWKVQCPQNDSLSGTDGDNSCCSLESALASNLDISVLGSSKMDAMFGLLNLSLYRL 1864
Query: 1438 LQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLD 1497
QND EAR+ ID +LK AA E+FKHCVREHAM +L + SE KE A I+ LK+L YL
Sbjct: 1865 FQNDLTEARMIIDKSLKTAAPEYFKHCVREHAMFMLTDGSELKEDASINGMLKILKGYLS 1924
Query: 1498 RARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFS 1557
+++ P + L R+FI I++PR+QQLI N+LSP+SSDFSL+NLVLEV +G SLLP+ S
Sbjct: 1925 VSQNYPVSEPLSRKFIQTIKKPRVQQLISNMLSPMSSDFSLLNLVLEVWHGQSLLPQESS 1984
Query: 1558 KLKDLVDFVEGIMEIVPSNYQLAFSVFK-LLNKDHNPNITDAVPESVLFWASSSLVSAIF 1616
KLKDLVDFVE IMEI P NYQLA S K LL++ H+ A SVLFW SS L++AI
Sbjct: 1985 KLKDLVDFVEAIMEISPCNYQLAMSACKQLLSRGHSSGDASA---SVLFWGSSLLINAIS 2041
Query: 1617 HAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLN 1676
A+PVAPE++WVEAAGIL N+ + +S F KRALS+YPFSI+LWK Y LSK G+++
Sbjct: 2042 QAIPVAPEFIWVEAAGILDNLMDNQVLSLNFHKRALSLYPFSIRLWKSYLMLSKITGNMD 2101
Query: 1677 TIVKAAREKGIELD 1690
++V AA+EKGIELD
Sbjct: 2102 SVVAAAKEKGIELD 2115
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100939|ref|XP_002312077.1| predicted protein [Populus trichocarpa] gi|222851897|gb|EEE89444.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/593 (60%), Positives = 452/593 (76%), Gaps = 2/593 (0%)
Query: 1097 VKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQM 1156
VK+NE SY LWLMYINSR L+ R+ AY+AAL+ LCR ASA D M+ASACILDLFLQM
Sbjct: 54 VKNNERSYGLWLMYINSRIHLDDRMVAYNAALTALCRQASAFDKGNMYASACILDLFLQM 113
Query: 1157 LQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIY 1216
+ C CMSGN KAIQ+I L A S++ H L LSDIL CLT SDK IFWVCCVYLVIY
Sbjct: 114 MDCLCMSGNVGKAIQKIQGLFPVAANSDEPHFLLLSDILACLTNSDKYIFWVCCVYLVIY 173
Query: 1217 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN 1276
RKLPDA++Q EC+KEL AI+WP VQL ++EKQRA+KL+EMAV+SVE+ N ESLE + N
Sbjct: 174 RKLPDAIVQCFECDKELLAIEWPYVQLPNEEKQRAVKLVEMAVDSVEMSVNSESLESDKN 233
Query: 1277 LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1336
R A FA++HI C V +GL C NLL KY KLYPSC+ELVL+ ARL+K+ G +S G
Sbjct: 234 GRMAQQFALSHIRCTLVFDGLACCQNLLGKYTKLYPSCVELVLLSARLKKNGLGSVSFEG 293
Query: 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1396
FEEA+ WPK VPGI CIWNQY+E ALQ DFA EL RWF+SV KVQY Q EI D +
Sbjct: 294 FEEAISNWPKEVPGIHCIWNQYIECALQEEGPDFAKELTVRWFNSVSKVQYPQNEILDAV 353
Query: 1397 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1456
+ S S ES S S+ +F + N NQMD+MFG +NLSL +LL D EA +AID ALKAA
Sbjct: 354 DGNSSLGSLESASASNLDFLIPNSNQMDMMFGLINLSLAKLLHKDHVEAHVAIDRALKAA 413
Query: 1457 ASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNI 1516
E+ KHC+ EHA+ LL +E + ++ AP+S +LK+LN YL+ ++LP + L R+FI+NI
Sbjct: 414 PPEYIKHCLSEHAVFLLNHEPKLRKDAPVSEKLKILNGYLNDTQALPVCEPLSRRFIDNI 473
Query: 1517 ERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSN 1576
E+P++QQLI ++LSPVSSDFSLVNLVLEV YGPSLLP ++ K+LVDFVE I+E+VPSN
Sbjct: 474 EKPKVQQLISSILSPVSSDFSLVNLVLEVWYGPSLLPPKSNQPKELVDFVEAILEMVPSN 533
Query: 1577 YQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGN 1636
Y +A SV KLL + + + + +SVL+WA S LV AIFHA+PV PE+VWVEAAGILG+
Sbjct: 534 YPIALSVCKLLCRGY--SYINVTSDSVLYWACSILVDAIFHAIPVPPEFVWVEAAGILGD 591
Query: 1637 ISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIEL 1689
IS ++ IS+RF+K+ALS +PFS+KLW CYY+LSK++G ++T+++ ARE+GIE+
Sbjct: 592 ISGVKLISDRFYKKALSAHPFSMKLWSCYYNLSKSRGYVSTVIQKARERGIEV 644
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483951|ref|XP_004156742.1| PREDICTED: uncharacterized protein LOC101228328 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/650 (53%), Positives = 451/650 (69%), Gaps = 14/650 (2%)
Query: 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106
N EGMKKAL +LSRA+E +P S LW YLLIFYS T + GKDDMFSY+VKHN SY L
Sbjct: 2 NSREGMKKALPVLSRAVENNPKSIALWAVYLLIFYSYTTTGGKDDMFSYAVKHNGQSYEL 61
Query: 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 1166
WLMYINSR L+ RL AYD+A+S LC + D +ASA ILDL LQM C CMSGN
Sbjct: 62 WLMYINSRMNLDARLAAYDSAISALCHNIFTHNLDGTYASAHILDLILQMTNCLCMSGNV 121
Query: 1167 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQL 1226
EKAIQRI LL A S++ +S SD+LTCL ISDK IFWVC VYLV+YRKLP A++Q
Sbjct: 122 EKAIQRIFGLLQVAMDSDEPYSFTHSDMLTCLNISDKCIFWVCVVYLVLYRKLPHAIVQQ 181
Query: 1227 LECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1286
LECEKEL I+WP V L + EK RA ++++ AV+ V+ N ESL+ + +S FAVN
Sbjct: 182 LECEKELIEIEWPAVHLTNGEKLRASRVVKKAVDFVDSCLNNESLDSKCYQKSIQMFAVN 241
Query: 1287 HIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPK 1346
HI C+ +E S NLL+KY+KLYPSC EL+L+ R +KHDFGD + + FE+A+ WPK
Sbjct: 242 HIRCLMAFEDIEFSRNLLDKYVKLYPSCPELLLLDIRARKHDFGDATVMAFEKAIRYWPK 301
Query: 1347 GVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD------M 1400
VPG+QCIWNQY EY L+NGR ELM R F S K+ S+ P+ +D +
Sbjct: 302 EVPGVQCIWNQYAEYLLRNGRIKCTEELMARRFDSTSKMDCSKTR--TPVNSDCDSLHLL 359
Query: 1401 SHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH 1460
H+S D + N++DV+F YLN S+H+LL ND EARLA + AL+AA+SE
Sbjct: 360 DHASGSIVRALD-----CSPNEVDVVFWYLNHSVHKLLLNDQLEARLAFENALRAASSET 414
Query: 1461 FKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPR 1520
F++C+RE+AM LL +ES E A + +L YL+ AR+ P + L R+FI +I +PR
Sbjct: 415 FRYCMREYAMFLLTDESLLNEAASVGGIRSILEGYLNDARAFPVPEPLSRRFIKDIRKPR 474
Query: 1521 LQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLA 1580
++ L+ N+LSP+S D SLVN +LEV YGPSLLP+ F+K K+LVDFVE I+EI+PSNYQL
Sbjct: 475 VRLLVSNMLSPISPDVSLVNCILEVWYGPSLLPQKFNKPKELVDFVETILEILPSNYQLV 534
Query: 1581 FSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSI 1640
SV K L D N + A P S++FWA S+L+ AIF +VP+ PE++WVEAA IL N+ +
Sbjct: 535 LSVCKQLCNDDNYSSQAASP-SLIFWACSNLIIAIFSSVPIPPEFIWVEAANILANVKGL 593
Query: 1641 EEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD 1690
E I+ERF KRALSVYPFS++LWK YY++ KT+GD + +++ E+GI+L+
Sbjct: 594 EAITERFHKRALSVYPFSVQLWKSYYNICKTRGDTSAVLQEVNERGIQLN 643
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77556192|gb|ABA98988.1| expressed protein [Oryza sativa Japonica Group] gi|125579753|gb|EAZ20899.1| hypothetical protein OsJ_36538 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1297 (35%), Positives = 687/1297 (52%), Gaps = 154/1297 (11%)
Query: 432 GNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANA 491
G+ V N + SLL+MEE ++ELE+AQEHRR CE+EER+AL+AYR+AQRALIEAN
Sbjct: 510 GDQIVITGQNTSLLSLLEMEEFQERELEDAQEHRRKCEVEEREALRAYRRAQRALIEANE 569
Query: 492 SCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPT--STH 549
C L R+RELCSA+ F+ ++S+L LS +G+ + P+ ++
Sbjct: 570 RCAILRRKRELCSAQVHGFIAENSSLAQP------------LSIQNAGHGLVMPSVLNSQ 617
Query: 550 QMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKN 609
G + NQGG S Q N ++ + D +LLP SK
Sbjct: 618 ANADGQMPGNQGGRSGSPYPEESPQQPVDKHEARSHNF-NDNSTPSDYMEDDLLP-PSKR 675
Query: 610 ALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSA 669
A +S+ + D EE V P E RQIS +
Sbjct: 676 A------RSDCISNLEDHMEETIH-----VYP----------VENRQISGE--------- 705
Query: 670 VSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSV 729
S QD LLEA+LRS L R G +++ +SG ++S G V
Sbjct: 706 -SVQDYELLEASLRSRLVERFGKKSYLNNSGEATE------------------ELSFGKV 746
Query: 730 PSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSK---GNKFPTTM 786
S + ++ +G +QEA + +G++E + H K + P+
Sbjct: 747 --SEIEREKAYVGPL------LQEADENVMTNI---EGMVELGNDAHEKRADSSNAPSIG 795
Query: 787 NHSTSVLLSPPILRGAFGHLKSELCIALS----------NQSGNQHNHGRNFEIEEVAC- 835
N+ +S +FG ELC+ LS Q+ +H G ++ + A
Sbjct: 796 NYDHEENIS------SFG----ELCMPLSVTHPIIPSSAPQNAARHMKGLFPDLHKKASD 845
Query: 836 -VNSDKTQACYLIANSK-PDIVKGYVGKEMGSYT------CNLAIDPLWPLCMYELRGKC 887
N +T +A + PD+ K +M S T + A+DP WP CM+ELRGKC
Sbjct: 846 YKNDCQTSNAASVATVRLPDVAKD--NAKMHSTTRKDMDIVSGAVDPFWPFCMFELRGKC 903
Query: 888 NNDECPWQHVKYFADR-NKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYI 946
N++ECPWQHV++ A R +K+ S I + Q IL PTY
Sbjct: 904 NDEECPWQHVEHHAWRKSKHTKHSKPSFSGWIPYGLFQH-------------ILPVPTYR 950
Query: 947 VGLDILKADSYQYQSVIARRHGLCWQKCLSVS----LAISSIYPKDLPADLSLIGDGRIE 1002
VG ++++AD QSV+A WQ+ S L++ + P D P SL
Sbjct: 951 VGSNLIRADLNLIQSVLASSIWQYWQRGFCASFPFPLSVQRVLPSDAP---SLQAGDDSS 1007
Query: 1003 CIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRA 1062
+RQ R + NK+ Q + E +E AL++ NK + +K AL L+RA
Sbjct: 1008 ANFDRDRQLLNLRMLDSRKNKIVQGSVDAELFLEGALILYFGKINKPDRLK-ALLYLARA 1066
Query: 1063 LEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLD 1122
+EADP++ ILW+ YL I+Y +GKDDMFS++V+HN SY LWLMYINSR + RLD
Sbjct: 1067 IEADPSTVILWVFYLHIYYQKDEGLGKDDMFSHAVQHNVCSYELWLMYINSRLRFDDRLD 1126
Query: 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1182
AY+ ALS+LC+ + +D + S+ +LD+FLQM+ CMSGN +KAI RI +L AT
Sbjct: 1127 AYNDALSMLCQMTAVTDMELKDRSSFVLDIFLQMVYFLCMSGNVDKAISRIYGILPTATP 1186
Query: 1183 --SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL-FAIDWP 1239
S D+ L+D+++CLTISD+ IFW+ C+Y+ IYRKLP+ ++ LE K+L ++ W
Sbjct: 1187 DCSGDK---LLADVISCLTISDRCIFWISCIYVSIYRKLPEEIIDQLEFLKDLPNSLVWS 1243
Query: 1240 PVQLEDDEKQRAIKLI-----EMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVL 1294
P++L D + + + L+ ++AV+ E NG+ + LR + AVNHI C+A L
Sbjct: 1244 PIELTVDNRSQILVLLNYAAGKIAVDINETVKNGDP----SYLRLSQFLAVNHINCLATL 1299
Query: 1295 NGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSV-GFEEALIKWPKGVPGIQC 1353
G + NLL KY++ YP C +++ ARL + +G + GF+E L+ WPK V GIQ
Sbjct: 1300 EGFQSCANLLVKYMEEYPMCPHILVFSARLHR-KYGSCPGLKGFDELLLGWPKEVQGIQY 1358
Query: 1354 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1413
+WNQ E+AL + + A +L+ RWF K Q + + + S S+ +S
Sbjct: 1359 LWNQCAEHALADNI-ELAEKLLTRWFEEYGKDGDIQSGGATRPMEISNEESVRSSVSSIQ 1417
Query: 1414 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473
E D +F LNLSL+R ++N+ EA++A+D ALK A E ++HC++EHA +
Sbjct: 1418 EVGSGTSTSEDQIFWLLNLSLYRTIENNLQEAKVAMDKALKLAHGESYEHCIKEHAAIHT 1477
Query: 1474 INESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVS 1533
+ ++ L++ YL R+LP LL R+F+ N+++ RL++LID + P S
Sbjct: 1478 LEKTSSSTDVQTQATFSLISGYLVDQRNLPVRDLLSRRFMKNVKKHRLKRLIDETIGPTS 1537
Query: 1534 SDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNP 1593
++ +L+N VLEVCYGPSLLP ++K LVDFVE +ME++P+NY+LA +V K + K
Sbjct: 1538 ANPALINSVLEVCYGPSLLPETIGEVKYLVDFVESVMEVLPANYRLALAVGKFMVKHCTG 1597
Query: 1594 NITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALS 1653
+ D++ FWASS L++AIF AVPVAPE VW+E A +L + + E + +RF+++A S
Sbjct: 1598 D--DSISMGTRFWASSILINAIFRAVPVAPESVWLEGASLLEKLQAAETV-KRFYQQATS 1654
Query: 1654 VYPFSIKLWKCYYDLSKTKG-DLNTIVKAAREKGIEL 1689
VYPFS KLW Y + K G +I +AAR++GIEL
Sbjct: 1655 VYPFSFKLWHSYLNSCKASGSSTESIAEAARQRGIEL 1691
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1690 | ||||||
| TAIR|locus:2039797 | 1577 | AT2G39580 "AT2G39580" [Arabido | 0.367 | 0.393 | 0.501 | 3.9e-219 | |
| UNIPROTKB|E1C1R6 | 1696 | ZFC3H1 "Uncharacterized protei | 0.168 | 0.168 | 0.245 | 1.3e-10 | |
| UNIPROTKB|O60293 | 1989 | ZFC3H1 "Zinc finger C3H1 domai | 0.177 | 0.150 | 0.214 | 3.5e-07 | |
| UNIPROTKB|E2QSB0 | 1984 | ZFC3H1 "Uncharacterized protei | 0.177 | 0.151 | 0.205 | 2.1e-06 | |
| UNIPROTKB|F6UU41 | 1994 | ZFC3H1 "Uncharacterized protei | 0.177 | 0.150 | 0.205 | 2.1e-06 | |
| UNIPROTKB|E1BIV7 | 1988 | LOC781886 "Uncharacterized pro | 0.213 | 0.181 | 0.2 | 4e-06 | |
| UNIPROTKB|E9PTM2 | 1993 | E9PTM2 "Uncharacterized protei | 0.169 | 0.144 | 0.203 | 0.00016 | |
| UNIPROTKB|F1MAP0 | 1993 | F1MAP0 "Uncharacterized protei | 0.169 | 0.144 | 0.203 | 0.00016 |
| TAIR|locus:2039797 AT2G39580 "AT2G39580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 3.9e-219, Sum P(3) = 3.9e-219
Identities = 322/642 (50%), Positives = 421/642 (65%)
Query: 1054 KALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINS 1113
+ALSLLS+ LE DPTSEILW YLLI+++ S GKD MFSY VKH+ SY +WLMYINS
Sbjct: 950 QALSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINS 1008
Query: 1114 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173
R LN +L AYD ALS LC AS S D HASACILD+ LQM C+SGN KAIQRI
Sbjct: 1009 RGQLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRI 1067
Query: 1174 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233
S+L PA S+D +S ILTCLT SDK +FWVCCVYLVIYRKLPD++++ LE EKEL
Sbjct: 1068 SKLQAPAAVSDDPDFSLMSHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIIRRLEMEKEL 1127
Query: 1234 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV 1293
I+WP V L+ D KQ A++L + + SVE + ++K R A FA+N+ M
Sbjct: 1128 LEIEWPTVNLDGDLKQMALRLFDKGMRSVE-HGTNNGIQK----RPAGLFALNYALFMIA 1182
Query: 1294 LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC 1353
++ LE ++L+ ++LYP+CLEL L+ R+Q ++ D+ S GFEE L + K IQC
Sbjct: 1183 VDELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQC 1242
Query: 1354 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMXXXXXXXXXX 1410
IWNQY EYAL+ G +D A ELM RW+ SVW V +Y V ++ D
Sbjct: 1243 IWNQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDD------NMLES 1296
Query: 1411 XXXXXXVSNRNQMDVMFGYLNLSLHRLLQNDWNEXXXXXXXXXXXXXSEHFKHCVREHAM 1470
V++ +Q+DVMFGYLNLSLH LLQ++W E EHF HC+REHA+
Sbjct: 1297 ALSDLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAV 1355
Query: 1471 LLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINN-IERPRLQQLIDNLL 1529
LINE + I+ Q++LLNSYLDRA SLP + L +FI+N E+PR+++L+ NLL
Sbjct: 1356 FQLINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLL 1415
Query: 1530 SPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNK 1589
+PVSS+ +VN+VLE +GPSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K
Sbjct: 1416 APVSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRK 1475
Query: 1590 DHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFK 1649
+ + + + + FWA +L S I A+PVAPEY+WVEA I+ +I+ + +ERF K
Sbjct: 1476 EEKQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLK 1534
Query: 1650 RALSVYPFSIKLWKCYYDLSKTKGDLN--TIVKAAREKGIEL 1689
+ALSVYP S+KLW+CY+ L K+ + I +AAR+KGI L
Sbjct: 1535 KALSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1576
|
|
| UNIPROTKB|E1C1R6 ZFC3H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 1.3e-10, Sum P(6) = 1.3e-10
Identities = 79/322 (24%), Positives = 143/322 (44%)
Query: 1013 FFRSRNGVLNKLK---QVELSNEQC-VEMALLILNQ-DANKLEGMKKALSLLSRALEADP 1067
+F S ++ L+ Q N Q +++A LNQ + + E + L++L+RALE +
Sbjct: 1045 YFTSETDDISNLEASVQENPCNVQLWIKLAYKYLNQNEGSSSECLDSTLNVLARALENNK 1104
Query: 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127
+ +W YL +F +M +V++ SY +W ++N L D D
Sbjct: 1105 ENPEIWCHYLRLFSKRGTKEEIQEMCETAVEY-AASYQIWWTFLN----LESSFDGKDYV 1159
Query: 1128 LS-VLCRCASASDGDEMHA--SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1184
+L ++G+E + S +L+ L + +G + A+ + L A N
Sbjct: 1160 CGRILQFLMEVTEGEENPSLLSFQLLETLLYRVHLSLFTGRYQNALLLLQNALKSA---N 1216
Query: 1185 DRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC------EKELFAIDW 1238
++ +S+ LT +SD+ + W+ ++L+ + LP KE F I W
Sbjct: 1217 EK---IISERLT---LSDRCLAWLSYIHLIEFNTLPVKFYDPANVGPSRIMNKEPFLIPW 1270
Query: 1239 PPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNG 1296
VQ D K L+ M ++V+ ++ E+LE + R A CF + N I + +L
Sbjct: 1271 QTVQ---DVKTDPDTLLAMFEDAVKTCTD-ENLEADK--RIAVCFPLYRNMIALLKLLER 1324
Query: 1297 LECSMNLLEKYIKLYPS-CLEL 1317
E ++ L ++L P+ CL L
Sbjct: 1325 WESAVELCRSLLELCPNNCLLL 1346
|
|
| UNIPROTKB|O60293 ZFC3H1 "Zinc finger C3H1 domain-containing protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 3.5e-07, Sum P(6) = 3.5e-07
Identities = 71/331 (21%), Positives = 135/331 (40%)
Query: 1013 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1067
+F + + L+ L N V++ L + LNQ+ + E + AL++L+RALE +
Sbjct: 1339 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGECSESLDSALNVLARALENNK 1398
Query: 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1399 DNPEIWCHYLRLFSKRGTKDEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1457
Query: 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1187
L L A + + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1458 LEFLMGAAKQETSNIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKSA---ND-- 1510
Query: 1188 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE------CEKELFAIDWPPV 1241
+ L SD+ + W+ ++L+ + LP E F + W V
Sbjct: 1511 ----GIVAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTESFVMPWQAV 1566
Query: 1242 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1301
Q D K L+ + ++V+ ++ ESL E + + N I +L E +M
Sbjct: 1567 Q---DVKTNPDMLLAVFEDAVKACTD-ESLAVEERIEACLPLYTNMIALHQLLERYEAAM 1622
Query: 1302 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1328
L + ++ P +C LE LV + + +HD
Sbjct: 1623 ELCKSLLESCPINCQLLEALVALYLQTNQHD 1653
|
|
| UNIPROTKB|E2QSB0 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 2.1e-06, Sum P(6) = 2.1e-06
Identities = 68/331 (20%), Positives = 132/331 (39%)
Query: 1013 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQ-DANKLEGMKKALSLLSRALEADP 1067
+F + + L+ L N V++ L + LNQ D E + AL++L+RALE +
Sbjct: 1334 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNDGLCSESLDSALNVLARALENNK 1393
Query: 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1394 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1452
Query: 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1187
+ L A D + S +L+ L +Q +G + A+ + L A G
Sbjct: 1453 VEFLMGAAKQEASDVL--SFQLLEALLFRVQLHIFTGRCQSALAVLQNALKSANGGI--- 1507
Query: 1188 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1241
+ L D+ + W+ ++L+ + LP E F + W V
Sbjct: 1508 ------VAEYLKTGDRCLAWLAYIHLIEFNVLPSKFYDPSNANPSRIVNTESFVMPWQAV 1561
Query: 1242 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1301
Q D K L+ + ++V+ ++ E+L E + N I +L E ++
Sbjct: 1562 Q---DVKTNPDMLLAVFEDAVKACTD-ENLTVEERVEVCVPLYTNMIALHQLLERYEAAV 1617
Query: 1302 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1328
L ++ ++ P +C LE LV + + +HD
Sbjct: 1618 ELCKRLLETCPMNCQLLEALVALYLQTDQHD 1648
|
|
| UNIPROTKB|F6UU41 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 2.1e-06, Sum P(6) = 2.1e-06
Identities = 68/331 (20%), Positives = 132/331 (39%)
Query: 1013 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQ-DANKLEGMKKALSLLSRALEADP 1067
+F + + L+ L N V++ L + LNQ D E + AL++L+RALE +
Sbjct: 1344 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNDGLCSESLDSALNVLARALENNK 1403
Query: 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1404 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1462
Query: 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1187
+ L A D + S +L+ L +Q +G + A+ + L A G
Sbjct: 1463 VEFLMGAAKQEASDVL--SFQLLEALLFRVQLHIFTGRCQSALAVLQNALKSANGGI--- 1517
Query: 1188 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1241
+ L D+ + W+ ++L+ + LP E F + W V
Sbjct: 1518 ------VAEYLKTGDRCLAWLAYIHLIEFNVLPSKFYDPSNANPSRIVNTESFVMPWQAV 1571
Query: 1242 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1301
Q D K L+ + ++V+ ++ E+L E + N I +L E ++
Sbjct: 1572 Q---DVKTNPDMLLAVFEDAVKACTD-ENLTVEERVEVCVPLYTNMIALHQLLERYEAAV 1627
Query: 1302 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1328
L ++ ++ P +C LE LV + + +HD
Sbjct: 1628 ELCKRLLETCPMNCQLLEALVALYLQTDQHD 1658
|
|
| UNIPROTKB|E1BIV7 LOC781886 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 4.0e-06, Sum P(6) = 4.0e-06
Identities = 79/395 (20%), Positives = 156/395 (39%)
Query: 1013 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1067
+F + + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1338 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1397
Query: 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1398 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1456
Query: 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1187
+ L A D + S +L+ L +Q +G + A+ + L AT
Sbjct: 1457 VEFLMGAAKREASDTL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLATDGR--- 1511
Query: 1188 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1241
+ L SD+ + W+ ++L+ + LP E F + W V
Sbjct: 1512 ------VAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNANPSRIVNIEPFVMPWQAV 1565
Query: 1242 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1301
Q D K L + ++V+ ++ ESL E + + N I +L E ++
Sbjct: 1566 Q---DVKTNPDMLFAVFEDAVKACTD-ESLTVEERVETCVPLYTNMIVLHQLLERYEAAV 1621
Query: 1302 NLLEKYIKLYP-SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 1360
L + ++ P +C L + A K + D + + A K P+ + ++
Sbjct: 1622 ELCKCLLESCPMNCQLLESLAALYLKMNQQDKARAVWVTAFEKSPQNA---EVFYHTCKF 1678
Query: 1361 YALQNGRHDFAAELMDRWFHSVWKV---QYSQVEI 1392
+ LQN R D + ++ S +K +YS +++
Sbjct: 1679 FILQN-RGDNLLPFLRKFIASFFKPGFEKYSNLDL 1712
|
|
| UNIPROTKB|E9PTM2 E9PTM2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 65/320 (20%), Positives = 121/320 (37%)
Query: 1013 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1067
+F S + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1343 YFTSETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1402
Query: 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127
+ +W YL +F +M +V++ Y + +++ + + +
Sbjct: 1403 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAP-DYQSFCTFLHLESTFEEKDYVCERM 1461
Query: 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1187
+ L A D + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1462 VEFLMGAAKRETSDIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLA---ND-- 1514
Query: 1188 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1241
+ + L D+ + W+ ++L+ + LP + E F + W
Sbjct: 1515 ----AIVAEYLRTEDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQAA 1570
Query: 1242 QLEDDEKQRAIKLIEMAVNSV--ELYSNGESLEK----ETNLRSAHCFAVNHI----WCM 1291
Q + + E AV + E ++GE E TN+ + H C
Sbjct: 1571 QDVKTNPDLLLAVFEDAVKACTDEALTSGERTEVCLPLYTNMMALHQLLERDEEAVELCK 1630
Query: 1292 AVLNGLECSMNLLEKYIKLY 1311
++L + LLE LY
Sbjct: 1631 SLLESCPTNCQLLETLAALY 1650
|
|
| UNIPROTKB|F1MAP0 F1MAP0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 65/320 (20%), Positives = 121/320 (37%)
Query: 1013 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1067
+F S + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1343 YFTSETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1402
Query: 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127
+ +W YL +F +M +V++ Y + +++ + + +
Sbjct: 1403 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAP-DYQSFCTFLHLESTFEEKDYVCERM 1461
Query: 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1187
+ L A D + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1462 VEFLMGAAKRETSDIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLA---ND-- 1514
Query: 1188 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1241
+ + L D+ + W+ ++L+ + LP + E F + W
Sbjct: 1515 ----AIVAEYLRTEDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQAA 1570
Query: 1242 QLEDDEKQRAIKLIEMAVNSV--ELYSNGESLEK----ETNLRSAHCFAVNHI----WCM 1291
Q + + E AV + E ++GE E TN+ + H C
Sbjct: 1571 QDVKTNPDLLLAVFEDAVKACTDEALTSGERTEVCLPLYTNMMALHQLLERDEEAVELCK 1630
Query: 1292 AVLNGLECSMNLLEKYIKLY 1311
++L + LLE LY
Sbjct: 1631 SLLESCPTNCQLLETLAALY 1650
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00018526001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (1159 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1690 | |||
| pfam10650 | 23 | pfam10650, zf-C3H1, Putative zinc-finger domain | 5e-07 | |
| pfam08424 | 324 | pfam08424, NRDE-2, NRDE-2, necessary for RNA inter | 2e-04 |
| >gnl|CDD|192649 pfam10650, zf-C3H1, Putative zinc-finger domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-07
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 877 PLCMYELRG-KCNNDECPWQHVK 898
PLC YEL G CN+D+C +QH +
Sbjct: 1 PLCPYELTGGVCNDDDCEFQHFR 23
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This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger. Length = 23 |
| >gnl|CDD|219834 pfam08424, NRDE-2, NRDE-2, necessary for RNA interference | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 1053 KKALSLLSRALEADPTSEILWITYLLIFYS---NTNSVGKDDMFSYSVKHNEGSYALWLM 1109
+K LS+L +AL+ +P SE L + LL +T+ + K + +K N GS LW
Sbjct: 50 EKKLSILEKALKHNPDSERL-LLGLLEEGEKVWDTDELLKR--WEKVLKENPGSPKLWRK 106
Query: 1110 YIN------SRTPLNHRLDAYD---AALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1160
Y++ S + Y+ AL S +L LFL++ +
Sbjct: 107 YLDFRQGDFSTFSYSKVRKTYEKCLRALKAALNGTITSHQAVPELEEVMLYLFLRLTRFL 166
Query: 1161 CMSGNTEKAI 1170
+G TE A+
Sbjct: 167 RQAGFTELAV 176
|
This is a family of eukaryotic proteins. Eukaryotic cells express a wide variety of endogenous small regulatory RNAs that regulate heterochromatin formation, developmental timing, defence against parasitic nucleic acids, and genome rearrangement. Many small regulatory RNAs are thought to function in nuclei, and in plants and fungi small interfering (si)RNAs associate with nascent transcripts and direct chromatin and/or DNA modifications. This family protein, NRDE-2, is required for small interfering (si)RNA-mediated silencing in nuclei. NRDE-2 associates with the Argonaute protein NRDE-3 within nuclei and is recruited by NRDE-3/siRNA complexes to nascent transcripts that have been targeted by RNA interference, RNAi, the process whereby double-stranded RNA (dsRNA) directs the sequence-specific degradation of mRNA. Length = 324 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1690 | |||
| KOG4839 | 753 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG4839 | 753 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.73 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.67 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.65 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.61 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.6 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.54 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.53 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.45 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.32 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.29 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.23 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.22 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.2 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.15 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.14 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.11 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.05 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.04 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.02 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.94 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.92 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.85 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.85 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.81 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.79 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.76 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.75 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.74 | |
| PF10650 | 23 | zf-C3H1: Putative zinc-finger domain; InterPro: IP | 98.71 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.66 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.55 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.54 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.53 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.41 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.23 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.2 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.05 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.03 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.03 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.99 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.95 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.92 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.91 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.84 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.84 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.82 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.76 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.64 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.5 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.47 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.42 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.33 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.29 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.28 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.27 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.21 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.16 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.15 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.08 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.01 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.91 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 96.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.9 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.87 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.86 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 96.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.52 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.51 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.34 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.31 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.29 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.17 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.99 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.84 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.69 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.39 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.04 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 94.65 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 94.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 94.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.58 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 94.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.42 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 94.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 93.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 93.72 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 93.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 92.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.19 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 91.99 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 91.9 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 91.34 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.2 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 91.03 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 90.95 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.7 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.61 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.77 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 89.74 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 89.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 88.8 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 88.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 87.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 87.29 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 87.26 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.92 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 86.36 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 86.21 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 85.63 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.52 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 84.61 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 84.12 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 83.84 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 83.34 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 82.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 82.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.17 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 81.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 81.43 | |
| KOG1492 | 377 | consensus C3H1-type Zn-finger protein [General fun | 81.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 81.06 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 80.91 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 80.34 |
| >KOG4839 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-72 Score=645.91 Aligned_cols=708 Identities=15% Similarity=0.079 Sum_probs=571.1
Q ss_pred CCCCCCCCCceEEEecCCCCCCcc-ccccccccccccCCceeecCCCCCCCchhHhhhhh-HHHhhhhcccccccCCCCc
Q 000307 65 WFPSSGKNDNLVISFSDDDSGSDT-EDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNL-QQTARNVSKAIPKKLSPSR 142 (1690)
Q Consensus 65 ~~~~~g~~~nlvi~fsdddsgs~~-e~~~~~~~~~~~~~~~~v~~n~r~~~~~~~k~~~~-q~~~r~~~~~~pkk~~~s~ 142 (1690)
.|+++|.|.++||+|||+|+|+|| ++.|.+++ . -|-.++-|.+++.++.... |...| .|.++..+..
T Consensus 14 ~~~s~~~n~~~~~NfSd~~~g~es~d~~~~~qs-n------~I~P~~~p~tF~~t~~~~p~~~d~~----~it~~~ls~~ 82 (753)
T KOG4839|consen 14 PYHSPLLNFKSYRNFSDYYRGKESLDLSSVSQS-N------MIEPDQCPCTFDLTGTCNPDDCDWQ----HITDYTLSRK 82 (753)
T ss_pred cCCCccccchhcccCCccccccccCCCcccccc-c------cCCCccCCcccccccCCCCcccccc----cccccccChh
Confidence 388999999999999999999999 55555554 2 2344888999999999999 88888 7888876666
Q ss_pred ceeeeccCCCCCCCcCCCCCCccccccccccccccccccc---------cccccccCchhhHHHHHHHHhhhhhhhhhHh
Q 000307 143 TLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSLE---------CGDQVGLRNSKLQDLRQQIALRESELKLKAA 213 (1690)
Q Consensus 143 ~f~~tk~~~~a~s~~~~~~~~~q~s~~~~~~~~~~l~~~e---------~~~~~~~n~~k~qdlr~qialre~elklkaa 213 (1690)
+|.. .+.+. +.-.+.++...+....||.| ..+.+.+|.+|+||+. |++|+++ |++++
T Consensus 83 ~F~~-----~~~~~------~sl~~~a~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s--~~~~ss~-~~~~~ 148 (753)
T KOG4839|consen 83 LFQD-----ILSYN------LSLIGCAETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVS--NINESSG-HTPPF 148 (753)
T ss_pred hhhh-----hhhcC------hhhhcCcccCCccccccchhhhHHhhhCCchhhhccchHHHHHHH--hhhhccc-CCCCc
Confidence 8873 22222 23344444445555667776 3455588999999999 9999999 99999
Q ss_pred hccccccc--------ccccccccCCCCCCCCCcccceeccccccccccCCCccccceeccCCCCCCCCCCCCccCCCcc
Q 000307 214 QQNKDLVI--------DSCENYHLGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKV 285 (1690)
Q Consensus 214 ~q~ke~~~--------vs~~~~~~~~l~~kepd~krlkv~~sy~~~~~~d~~q~~~~~ks~~p~k~~~~~~~~~~~r~~~ 285 (1690)
|..||.+. ++..+.|.+.+||.||.+||+++++- +.. +||....+-..+-+++|
T Consensus 149 q~~Kd~r~~K~t~~rrp~~~ssdT~~~e~se~pkk~~~~s~~-------~~~--~p~~D~~vt~~~~~~~n--------- 210 (753)
T KOG4839|consen 149 QTYKDKRKWKPTFWRRPISDSSDTSDEEQSEGPKKYAFQSEN-------QIN--VPALDTVVTPDDVRYTN--------- 210 (753)
T ss_pred cchhhhccCCCcccccccccccccchhcccccchhhhccCcc-------ccc--Cccccceeccccccccc---------
Confidence 99999987 67788899999999999999999998 333 36666666665656555
Q ss_pred cCCCCCCCccccccceeeecccCCccccCCCcccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc
Q 000307 286 DRSQKDIPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLK 365 (1690)
Q Consensus 286 ~~~~k~~p~~r~~s~ivk~~~q~~~~~~~s~~~~~~~~~~~~n~n~~~~q~d~~~~~v~~~~~~~~~~~~~~~~s~~~~k 365 (1690)
|..|++ .+..||+.|.+|.|....+ |.| +++ | .+|+.++++..|
T Consensus 211 ------------e~d~~~------------------~le~gV~~N~s~~~l~~ks--~v~-~l~-~--~eG~~SsS~~sq 254 (753)
T KOG4839|consen 211 ------------ETDDIA------------------NLEAGVLENPSHVQLWLKS--AVK-YLN-Q--NEGECSSSLDSQ 254 (753)
T ss_pred ------------chhHHH------------------hhccccccChHHHhhccch--hhh-hhh-h--hcCccchhhhcc
Confidence 333443 5678999999999999988 665 344 3 899999999999
Q ss_pred ccccccCCCCCccCCCCCCCccccccccccccccccccccccCCC--CCCCCCCc---cccccccccccCCCCccccCCC
Q 000307 366 NAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNN---VHQVNTASLGNFSGNGNVSGNS 440 (1690)
Q Consensus 366 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~---~~~~~~a~l~n~~g~~nv~~h~ 440 (1690)
.+..+++ +.|++..+.|+ .++..+ ...||++.+|+| +..++|++ +++.++-.+.|++|.+.++ .
T Consensus 255 gsl~ln~-----~kaaR~le~~K-iD~~~s---~~h~L~~~nGt~~v~~e~~n~~~~~lp~~~~~~~~~~p~st~~p--~ 323 (753)
T KOG4839|consen 255 GSLALNV-----LKAARALENNK-IDNPES---WCHYLRLFNGTKDVVQEMCNTAVEYLPDYQSFWTFLHPESTFEP--K 323 (753)
T ss_pred ccceeeh-----hhhhhHHhhcc-CCCccc---hhheeeccCCChhHHHHhhhhhhhcccccccchhccCCCCcCCc--c
Confidence 9988886 77888888887 553333 478999999999 88888887 8888999999999999999 9
Q ss_pred cchhhhHHhhHHHhhHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHhhhhHHHhHhhhhhcccccceeecCCccccc
Q 000307 441 NVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWS 520 (1690)
Q Consensus 441 n~d~~sl~~meel~dkeleeaqe~r~~ceieer~alkayrkaqraliean~rc~~ly~kre~~sa~~~sli~~~s~l~~~ 520 (1690)
+++|.++++.|+-.||+++++|+..|..|+++|||++.|+++||+++|||+||+++|.+||+. ..+||++|+.|.||
T Consensus 324 ~~v~e~~~~~~~g~dk~~~~~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r~~~---~~~Li~rd~~l~wp 400 (753)
T KOG4839|consen 324 DYVCERMLEFLMGADKQETSNILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANRGIV---AEYLITRDRCLAWP 400 (753)
T ss_pred hhhHhhhhhhhhccchhhhHHHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhhchh---hhhheehhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999954 89999999999999
Q ss_pred cccccccCcccccCCCCCCccccc-cC---CCCcccCCCcCCCCCCCCCCCcccCCCCCCCCcccccCCCCCCCCCCCCC
Q 000307 521 SGQHETLGNEFDLSKHVSGNMHLA-PT---STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQD 596 (1690)
Q Consensus 521 s~~~~~~~~g~~~~~~~~~~~~~~-p~---~~~~~~~~~~~~n~~g~~s~~~~~~~~~~~~~~~h~~g~nlg~~~cs~~~ 596 (1690)
-+.| --+|++-++- ++++ |+ ++|..+.+|++. .++.+..-|+|+|. |..+
T Consensus 401 ~~~p--ts~~~~~Lps----v~~a~~sn~~~sh~~n~E~vv~-----------------~~~~~~~v~~np~~---s~~g 454 (753)
T KOG4839|consen 401 AYIP--TSIEFNILPS----VKFADPSNDNPSHIVNTESVVM-----------------PWQAVQDVKTNPDL---SAVG 454 (753)
T ss_pred ccCC--cchhhcccCC----CcccccccCCcccccccceecc-----------------CCchhhhhccCCch---hhcc
Confidence 5532 2566655544 2233 44 899999999976 45556668999996 8899
Q ss_pred CCccCcCccCccccccCCCCCCcccCCCcchhhhhccCcccccccchhhhhhhHhhhhccccccccccccccccCCCchH
Q 000307 597 ASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPL 676 (1690)
Q Consensus 597 astse~~~~~~~~~~~~~~~~s~~~~~~~de~~~~~~~~he~~~~~~~~~~~~~~~~~r~~~~~~~~n~~~s~~~~qd~l 676 (1690)
||||..+|+.++.++.++++| +..+ .|.++++||+++
T Consensus 455 as~s~a~t~~s~~te~rLeap-----~l~~--te~iav~heEHp------------------------------------ 491 (753)
T KOG4839|consen 455 ASASKACTDESLATEERLEAP-----LLLY--TEMIAVHHEEHP------------------------------------ 491 (753)
T ss_pred ccccccCCCcchhHHHHHhcc-----ccCc--cccccchhhhhh------------------------------------
Confidence 999999999999999999999 4444 788999998522
Q ss_pred HHHHhhhHHHHHHhccccccCCCCCCCCcCCccccccccccccccccccCCCcCCCccccccccCCCCCCccccccCCcc
Q 000307 677 LLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 756 (1690)
Q Consensus 677 llea~lrs~lf~r~g~r~~~~~~~~~~~~e~~~e~g~e~~~g~~~~q~~~g~~~~~~~~~~~~dl~~n~~~e~~~~~~~~ 756 (1690)
|.+|+.+|+|||++..+..+ .|++.|+.+.+++| .|.+.+|+.- |=|-+ ++ |...++..+.++++
T Consensus 492 ---a~~~~~~~d~l~~l~Es~~g-~c~~~etlV~~~~e--~~~~~~~R~k--v~L~~-----~e--Gk~n~q~~p~e~~~ 556 (753)
T KOG4839|consen 492 ---AERYEAAMDLLKSLLESCPG-NCQLLETLVALYLE--TNQHDKARAK--VWLTA-----FE--GKKNPQNAPVEYHM 556 (753)
T ss_pred ---HHHHHHHHHHHHHHHhcCCc-cchhHHHHHHHHhh--hcchhhhhhH--HHHHh-----hh--ccCCccCCcccchh
Confidence 89999999999999999988 99999999999998 8888888772 11222 23 55577777778777
Q ss_pred ccccchhhccCccccccccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhhcccccCCcccCCCccccchhhhh
Q 000307 757 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACV 836 (1690)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~h~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1690)
.. ..|++|.. +.++|+.- .+.+++++.|.||++..|.|+ | +|++.+| +.++-++. |-
T Consensus 557 ~~---~sI~ens~---------~~d~~s~r-ilss~s~~~Pgf~~t~~~dkv--p-~l~~~~g------P~yi~~~~-~y 613 (753)
T KOG4839|consen 557 CK---FSILENSG---------DNDLPSLR-ILSSASFFKPGFEKTNNLDKV--P-YLLNIPG------PIYIPSRL-CY 613 (753)
T ss_pred HH---HHHHhccc---------cccchhhh-hhhhhhhcCCcccccchhhhc--c-hhhcCCC------chhhhhhh-cc
Confidence 66 66777765 55666543 578899999999999999999 6 7889977 44444322 22
Q ss_pred ccccccccceeccCCCCccccccccccccccccCCCCCCCcceeecccc-cccCCCCcchhhhcccccc--cccccCCCC
Q 000307 837 NSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRG-KCNNDECPWQHVKYFADRN--KNLHDDSDS 913 (1690)
Q Consensus 837 ~sd~~~~~~~~~~~~~~~~~~~~~~~~~S~t~s~~idp~~~lC~fel~G-~CNd~~C~wQH~~d~~~~~--q~~~d~s~~ 913 (1690)
. +..+.+++. +|.+ ..++.-+|+..+|||+|+||+||++| .||+|+|.|||++|+..++ +..|+
T Consensus 614 ~--~r~~~~f~e------~Vpy-~~~i~~y~~~lk~~p~~~~c~YE~~ggrCn~d~c~w~hf~df~~~g~~~~~~~---- 680 (753)
T KOG4839|consen 614 G--NRDDDMFNE------QVPY-LWLIYCYCHPLKSSPKETVCAYEAAGGRCNIDQCIWMHFLDFANNGRAAGSRN---- 680 (753)
T ss_pred c--chhhHHHhh------hhhh-HhhhheecccccCCcchhHHHHHhccCccCchhhhHHHHHHhhcccchhhhcC----
Confidence 1 566777755 5666 44566666667999999999999997 9999999999999999997 44444
Q ss_pred CCCCCCCCcccccccccccccccccccCCCccccccccccchhhhhhhhhhhccCccccccccccccccccCC
Q 000307 914 AGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYP 986 (1690)
Q Consensus 914 ~~c~~~s~~~e~~~~~~~k~~k~~~~l~~pty~v~~d~m~~Dq~a~k~~r~~rp~q~wqK~~s~s~a~s~~~q 986 (1690)
..-..++.-++++++.. |.+...++++.|||.+..|.|++|.+.|.+|.+-++++-|.|+++.+.|.+.+..
T Consensus 681 ~~~r~~~~td~v~~~s~-k~~~~ldivfs~td~~s~~~~~vdf~~~~~v~~~~H~~~w~~~~s~~pa~s~s~~ 752 (753)
T KOG4839|consen 681 KVQRFKFFTDLVNRCSV-KVPARLDIVFSSTDYWSYEFHRVDFFYLSCVPKTQHSKTWERFCSVMPANSGSAL 752 (753)
T ss_pred chhhhcccchhhhhccc-ccccccccccccccccccccceeeEEEEeeeeHHHHhHHHHHHHhhccccccccc
Confidence 33444455566655554 6888999999999999999999999999999999999999999999999887653
|
|
| >KOG4839 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=412.97 Aligned_cols=564 Identities=19% Similarity=0.237 Sum_probs=446.0
Q ss_pred cccccccccCCCCCCCcceeecccccccCCCCcchhhhcccccccccccC-C---CCCCCCCCCCccccccccccccccc
Q 000307 861 KEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDD-S---DSAGCQIGSTIPQEHCNVGTKLSKG 936 (1690)
Q Consensus 861 ~~~~S~t~s~~idp~~~lC~fel~G~CNd~~C~wQH~~d~~~~~q~~~d~-s---~~~~c~~~s~~~e~~~~~~~k~~k~ 936 (1690)
++.+++++|++|.|.+++|.|+++|+||+++|.|||..|++|++.+|+|+ + +++||.+.++-+++.+++ +|+
T Consensus 38 ~d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~~~F~~~~~~~~sl~~~a~t~~~~~~taSS----ekt 113 (753)
T KOG4839|consen 38 LDLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSRKLFQDILSYNLSLIGCAETSTNEEITASS----EKT 113 (753)
T ss_pred CCCccccccccCCCccCCcccccccCCCCcccccccccccccChhhhhhhhhcChhhhcCcccCCccccccch----hhh
Confidence 57899999999999999999999999999999999999999999999999 4 889999999999998777 899
Q ss_pred ccccCCCccccccccccchhhh-------------------hhhhhhhccCccccccccccccccccCCCCCCcccccCC
Q 000307 937 HDILTPPTYIVGLDILKADSYQ-------------------YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIG 997 (1690)
Q Consensus 937 ~~~l~~pty~v~~d~m~~Dq~a-------------------~k~~r~~rp~q~wqK~~s~s~a~s~~~q~~~p~d~~~~~ 997 (1690)
+.|+ |+++.|+|.|||+. ||+.|+|+| ++|+|+.++++-+++.+|+.+|.+++.-+
T Consensus 114 vsK~----~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~-t~~rrp~~~ssdT~~~e~se~pkk~~~~s 188 (753)
T KOG4839|consen 114 VSKL----FGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKP-TFWRRPISDSSDTSDEEQSEGPKKYAFQS 188 (753)
T ss_pred HHhh----hCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCC-cccccccccccccchhcccccchhhhccC
Confidence 9999 99999999999998 999999999 79999999999999999999999997777
Q ss_pred CCcceec--CCc--cccccccccchhhhhhhhhchhhh----HHHHHHHHHHhcccc-CchhhHHH----HHHHH--HHH
Q 000307 998 DGRIECI--GSW--NRQSSFFRSRNGVLNKLKQVELSN----EQCVEMALLILNQDA-NKLEGMKK----ALSLL--SRA 1062 (1690)
Q Consensus 998 d~ri~~~--~~~--~~~~rYF~~~~d~in~Le~~~~d~----qlWl~lAl~~Lnq~~-n~~g~yDA----ALdLL--srA 1062 (1690)
+..|.++ |++ +++++| .+++|++.+||++|..+ |||++.|+++|++++ +.+...++ |+++| .|+
T Consensus 189 ~~~~~~p~~D~~vt~~~~~~-~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~~sqgsl~ln~~kaaR~ 267 (753)
T KOG4839|consen 189 ENQINVPALDTVVTPDDVRY-TNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSLDSQGSLALNVLKAARA 267 (753)
T ss_pred cccccCccccceeccccccc-ccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhhhccccceeehhhhhhH
Confidence 7766666 665 999999 89999999999999887 999999999999988 77788888 99999 999
Q ss_pred HHhCC-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC
Q 000307 1063 LEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1063 LEINP-tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD 1141 (1690)
||.+. ++++.|++|+.++. |+....++|+..|+++.| .|.=||.|.-.++++..+.++++..+++++...... .
T Consensus 268 le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~lp-~~~~~~~~~~p~st~~p~~~v~e~~~~~~~g~dk~~--~ 342 (753)
T KOG4839|consen 268 LENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYLP-DYQSFWTFLHPESTFEPKDYVCERMLEFLMGADKQE--T 342 (753)
T ss_pred HhhccCCCccchhheeeccC--CChhHHHHhhhhhhhccc-ccccchhccCCCCcCCcchhhHhhhhhhhhccchhh--h
Confidence 99999 99999999999976 788888999999999996 788899999999999999999999999997766654 2
Q ss_pred cchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH-HHhhcccc
Q 000307 1142 EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLP 1220 (1690)
Q Consensus 1142 r~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~YrvLP 1220 (1690)
....|++++|.++.-+++-.++|+-..+++ |.++|.+..+. .|+ ..||-..|+|.+|..+++ .+.+-+||
T Consensus 343 ~~~~s~~llE~~~~n~~~~~~~~~rs~~lA----~lrnae~~~~r-~~~----~~~Li~rd~~l~wp~~~pts~~~~~Lp 413 (753)
T KOG4839|consen 343 SNILSFQLLEALLFNVQLHIFTGRRSSALA----ILRNAEKSANR-GIV----AEYLITRDRCLAWPAYIPTSIEFNILP 413 (753)
T ss_pred HHHHHHHHhhhchhhhhhhhhhhhhhHHHH----HHHhhHHHhhh-chh----hhhheehhhhhcccccCCcchhhcccC
Confidence 346899999999999999999998888888 66766777775 333 789999999999999999 99999999
Q ss_pred H-HHHhhcc------chhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH--HHHHHH
Q 000307 1221 D-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCM 1291 (1690)
Q Consensus 1221 G-d~y~qne------~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL--N~IRq~ 1291 (1690)
. ++++..+ ..-|-+-.+|+.++.++.+|+ ..++...|.+.+. +++++-+ .+++.+..+ ++|.-.
T Consensus 414 sv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~t----~~s~~te--~rLeap~l~~te~iav~ 486 (753)
T KOG4839|consen 414 SVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKACT----DESLATE--ERLEAPLLLYTEMIAVH 486 (753)
T ss_pred CCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccCC----CcchhHH--HHHhccccCccccccch
Confidence 9 8888877 355778899999999999999 5555555444443 4554444 333333222 222211
Q ss_pred HH---hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccH-HHHHHHHH--hCCCCCc--hhHHHHHHHHHH
Q 000307 1292 AV---LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS-VGFEEALI--KWPKGVP--GIQCIWNQYVEY 1361 (1690)
Q Consensus 1292 I~---lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai-~vfe~aL~--~~PkNa~--g~qcaW~QLiq~ 1361 (1690)
-. .+.-++++.+|..+++.+|-.|.+ .|++.|++... -..++ .+|.++++ ..|.++| +++|.+
T Consensus 487 heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~-~~~~R~kv~L~~~eGk~n~q~~p~e~~~~~~------ 559 (753)
T KOG4839|consen 487 HEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQ-HDKARAKVWLTAFEGKKNPQNAPVEYHMCKF------ 559 (753)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcc-hhhhhhHHHHHhhhccCCccCCcccchhHHH------
Confidence 11 336788999999999999999999 99999998655 45566 59999999 8899988 999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcc---cccccchhhccc---CCCCCCC---CCCCCCcccccccccchhhhhHHHHH
Q 000307 1362 ALQNGRHDFAAELMDRWFHSVWKVQY---SQVEISDPLVAD---MSHSSPE---STSTSDPEFSVSNRNQMDVMFGYLNL 1432 (1690)
Q Consensus 1362 Al~~e~~d~ai~L~~~ff~gia~~Q~---~~deALD~lr~g---~s~i~~e---s~s~~vSDfy~~~~~Q~d~~fa~LGD 1432 (1690)
-|.++.-+--.+-.+ .++.+-.-+ ..-.-+|-+... .+++..- .-++..-|.+ ..|+ .|++.
T Consensus 560 sI~ens~~~d~~s~r--ilss~s~~~Pgf~~t~~~dkvp~l~~~~gP~yi~~~~~y~~r~~~~f---~e~V----py~~~ 630 (753)
T KOG4839|consen 560 SILENSGDNDLPSLR--ILSSASFFKPGFEKTNNLDKVPYLLNIPGPIYIPSRLCYGNRDDDMF---NEQV----PYLWL 630 (753)
T ss_pred HHHhccccccchhhh--hhhhhhhcCCcccccchhhhcchhhcCCCchhhhhhhcccchhhHHH---hhhh----hhHhh
Confidence 443333322222222 122222222 111112222211 1111100 1112233444 4555 77887
Q ss_pred --HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000307 1433 --SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1433 --~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
||..-|+-+..|.+-|||.+.+-- ++ ..-.|..|..|-.
T Consensus 631 i~~y~~~lk~~p~~~~c~YE~~ggrC-n~-d~c~w~hf~df~~ 671 (753)
T KOG4839|consen 631 IYCYCHPLKSSPKETVCAYEAAGGRC-NI-DQCIWMHFLDFAN 671 (753)
T ss_pred hheecccccCCcchhHHHHHhccCcc-Cc-hhhhHHHHHHhhc
Confidence 677788999999999999999722 22 1345777777754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-20 Score=223.37 Aligned_cols=401 Identities=14% Similarity=0.026 Sum_probs=296.2
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---- 1105 (1690)
+.+..+..|..++++ |+++.|+..|+++++++|.++++|+.++.+|...++-.+|..+|++|+++.|++..
T Consensus 21 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQK-----NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHc-----CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 446678888888877 78999999999999999999999999999999999999999999999999998755
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
++..|..++ .|++|+..+.+.....++.. .+++..+..+|...|++++|+..+.++.. .....
T Consensus 96 ~a~~~~~~g--------~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 158 (899)
T TIGR02917 96 LARAYLLQG--------KFQQVLDELPGKTLLDDEGA-------AELLALRGLAYLGLGQLELAQKSYEQALA--IDPRS 158 (899)
T ss_pred HHHHHHHCC--------CHHHHHHhhcccccCCchhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 788999999 99999999976653332334 67889999999999999999999998875 33344
Q ss_pred cccccHHHHHHHhccCCccch--hHHH---HH--HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHH
Q 000307 1186 RHSLFLSDILTCLTISDKLIF--WVCC---VY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1258 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~A--wLc~---iY--dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA 1258 (1690)
. ...+.....|+..++-..| ++-. .. ......+.|.++...|...+|... +.++++.+|++..+++.+|
T Consensus 159 ~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 159 L-YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA---YRKAIALRPNNPAVLLALA 234 (899)
T ss_pred h-hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHhhCCCCHHHHHHHH
Confidence 3 5556667778888876666 2222 22 445566789999999999999999 9999999999999999997
Q ss_pred HHHHHhhcCCcchhhhhcc----cchhHHHHHHHHHHHH--hcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCC
Q 000307 1259 VNSVELYSNGESLEKETNL----RSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGD 1331 (1690)
Q Consensus 1259 ~dYY~~~~ndEsla~~~n~----k~d~~tKLN~IRq~I~--lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e 1331 (1690)
.-++. .|+-+.+...-. ..+.......++.++. ..+.+.|+.+|.++++..|..... .+.+..+...+-.+
T Consensus 235 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIE--AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 44444 454443333200 0011111122333333 458999999999999999998766 34443333344367
Q ss_pred ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcc
Q 000307 1332 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVA 1398 (1690)
Q Consensus 1332 ~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~ 1398 (1690)
.|+..|..++...|++.. ++..++...+..++++.++.++++ +..+..+.+. ..++|++.+.+
T Consensus 313 ~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQ----ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHhCCCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999988 888899999999999999999877 3344444444 88889988886
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCC
Q 000307 1399 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESE 1478 (1690)
Q Consensus 1399 g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~d 1478 (1690)
.....+. ..+++ -.++.++.. .|+.++|...|+++++..|.. ..+....+.-. ....+
T Consensus 389 ~~~~~~~------~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~-~~~~~ 446 (899)
T TIGR02917 389 ATELDPE------NAAAR-----------TQLGISKLS--QGDPSEAIADLETAAQLDPEL--GRADLLLILSY-LRSGQ 446 (899)
T ss_pred HHhcCCC------CHHHH-----------HHHHHHHHh--CCChHHHHHHHHHHHhhCCcc--hhhHHHHHHHH-HhcCC
Confidence 5432211 12333 567778888 899999999999999988876 33333333222 22334
Q ss_pred CCcccc
Q 000307 1479 PKEGAP 1484 (1690)
Q Consensus 1479 L~KAEq 1484 (1690)
.++|.+
T Consensus 447 ~~~A~~ 452 (899)
T TIGR02917 447 FDKALA 452 (899)
T ss_pred HHHHHH
Confidence 445444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-19 Score=212.55 Aligned_cols=411 Identities=13% Similarity=0.009 Sum_probs=294.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|+++.|+..|.++++.+|+...+++.++.+|+.++...++...|.++++..|.+.. ++.+|+..+ .++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--------~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG--------RVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC--------CHH
Confidence 67899999999999999999889999999999999999999999999999988765 677888888 889
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|+..|..+.... +.. .+++..+..+|...|++++|+..+.+... ..-.+. .........|+..++...
T Consensus 347 ~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 347 EAIATLSPALGLD-PDD-------PAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENA-AARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHhCCChHH
Confidence 9999998887766 665 67888899999999999999998888765 222232 333444556677777665
Q ss_pred h--hHHHHH-----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhccc
Q 000307 1206 F--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1278 (1690)
Q Consensus 1206 A--wLc~iY-----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k 1278 (1690)
| .+.... ........+..|...|..+++..+ +....+..|+++.....+| ..|.. .|+-..+...-.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA---AKKLEKKQPDNASLHNLLG-AIYLG-KGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCcHHHHHHH-HHHHh-CCCHHHHHHHHHH
Confidence 5 221111 223334556778888889999888 8888888888888888886 44443 4544433332100
Q ss_pred ------chhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCch
Q 000307 1279 ------SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG 1350 (1690)
Q Consensus 1279 ------~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g 1350 (1690)
.....-.++.+.+....+.+.++.+|+++++.+|.+.+. .+...|.. .+..++|+..|++++...|++..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~- 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR-TGNEEEAVAWLEKAAELNPQEIE- 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchh-
Confidence 011112243344444558899999999999999999888 44444444 44478899999999999999988
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCccccc
Q 000307 1351 IQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSV 1417 (1690)
Q Consensus 1351 ~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~ 1417 (1690)
.|..++......+++++++.+++. +..+..+... ..++|++.+.+.....+. ....+
T Consensus 569 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~- 638 (899)
T TIGR02917 569 ---PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALAL- 638 (899)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHH-
Confidence 899999999999999999999887 2334444443 788888888765432211 11223
Q ss_pred ccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH-----
Q 000307 1418 SNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL----- 1492 (1690)
Q Consensus 1418 ~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV----- 1492 (1690)
-.++.+|++ .|++++|...|+++++..|++ ..++...+..+...+ +.++|..+-. ++.
T Consensus 639 ----------~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~--~~~~~~~~ 701 (899)
T TIGR02917 639 ----------LLLADAYAV--MKNYAKAITSLKRALELKPDN--TEAQIGLAQLLLAAK-RTESAKKIAK--SLQKQHPK 701 (899)
T ss_pred ----------HHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHH--HHHhhCcC
Confidence 678899999 999999999999999999998 778888887776544 4666655433 222
Q ss_pred --HHHHhhhcccccccc--cchhhh
Q 000307 1493 --NSYLDRARSLPYLKL--LPRQFI 1513 (1690)
Q Consensus 1493 --sTYLDTAWILf~~~~--lARiYI 1513 (1690)
..|..-+++++..+. +|..+.
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 122222677777777 565555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-15 Score=197.35 Aligned_cols=589 Identities=10% Similarity=0.011 Sum_probs=368.2
Q ss_pred cccccccccch--hhhh----h-hhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHH-------
Q 000307 1008 NRQSSFFRSRN--GVLN----K-LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW------- 1073 (1690)
Q Consensus 1008 ~~~~rYF~~~~--d~in----~-Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaW------- 1073 (1690)
-+++||..... |... + +.-.|.+.+++..++...+.+ |++++|...|.++++++|+++.++
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~-----g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQ-----GDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 36667766333 2222 2 223345668888887777666 788999999999999999999986
Q ss_pred ---------HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcch
Q 000307 1074 ---------ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1144 (1690)
Q Consensus 1074 ---------yeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~ 1144 (1690)
..++.++...++.++|...|+++++.+|++..++..|...-... .-.+++|+..|+++...+ |+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~---~g~~~~A~~~L~~ll~~~-P~~-- 180 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKL---PAQRPEAINQLQRLNADY-PGN-- 180 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhC---CccHHHHHHHHHHHHHhC-CCC--
Confidence 55667899999999999999999999999988766565532111 126889999999999998 888
Q ss_pred hhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC-c------------ccccHHHHHHHhccCCccc----h-
Q 000307 1145 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R------------HSLFLSDILTCLTISDKLI----F- 1206 (1690)
Q Consensus 1145 ~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s-E------------~~lSLsKi~~YLt~sDkc~----A- 1206 (1690)
.++.+.++.+|...|++++||..+.++......... . ..-.+..+..|+..-.... |
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 788999999999999999999999988641100000 0 0001111122221111100 0
Q ss_pred -hHHH---HH-HHhhc-cccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-----
Q 000307 1207 -WVCC---VY-LVIYR-KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET----- 1275 (1690)
Q Consensus 1207 -wLc~---iY-dl~Yr-vLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~----- 1275 (1690)
-|.. .. +..|. .+.|..+...|...+|... +.++++.+|+++.++..+|.-|+. .++-+.+...
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~---l~~aL~~~P~~~~a~~~Lg~~~~~--~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE---LQQAVRANPKDSEALGALGQAYSQ--QGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 0000 00 11111 2458888999999999999 999999999999999999844544 4554444433
Q ss_pred --cccchhHHH----HH--H-------HHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHH
Q 000307 1276 --NLRSAHCFA----VN--H-------IWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFE 1338 (1690)
Q Consensus 1276 --n~k~d~~tK----LN--~-------IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe 1338 (1690)
+++.....+ +. . -..++...+.++|+.+|+++++.+|.+... .|...|+..++ .++|+..|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 221111001 00 0 011112448999999999999999999988 44445555554 899999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH---------------------HHHhhh-cccccccchhh
Q 000307 1339 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF---------------------HSVWKV-QYSQVEISDPL 1396 (1690)
Q Consensus 1339 ~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff---------------------~gia~~-Q~~~deALD~l 1396 (1690)
++|.++|++.. +|..+..... .+++++|+..+..+- .+-.+. +...++|+..+
T Consensus 410 ~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 410 QALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998 8877777554 558898887765411 121222 23888999988
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000307 1397 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1476 (1690)
Q Consensus 1397 r~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~ 1476 (1690)
++....-+. ...++ -.|+.+|++ .|+.++|...|+++++..|.+ ...+..++.|+...+
T Consensus 485 ~~Al~~~P~------~~~~~-----------~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 485 RQRLALDPG------SVWLT-----------YRLAQDLRQ--AGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHhCCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCC
Confidence 876544321 12233 568889999 999999999999999999988 677777887765433
Q ss_pred CCCCcccc-------------hhhhHHHH--HHHHhhhcccccccc--cchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000307 1477 SEPKEGAP-------------ISWQLKLL--NSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1539 (1690)
Q Consensus 1477 ~dL~KAEq-------------MS~~~KtV--sTYLDTAWILf~~~~--lARiYI~~i~k~rv~~liDqaL~~~S~dsS~v 1539 (1690)
. .++|.. |......+ ..+|..|.++...++ +|...+ + ..|.+ ...
T Consensus 544 ~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l------------~--~~p~~---~~~ 605 (1157)
T PRK11447 544 R-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL------------R--QQPPS---TRI 605 (1157)
T ss_pred C-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH------------H--hCCCC---chH
Confidence 2 222211 11000000 123333444555554 444444 1 11211 111
Q ss_pred HHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000307 1540 NLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1619 (1690)
Q Consensus 1540 NkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fwA~s~l~nai~~a~ 1619 (1690)
...|-.|+ + +.++...=..+.+.+++.-|.|...-+..+.++....+ ...+..... .+...-
T Consensus 606 ~~~La~~~----~--~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~------~~eA~~~l~------~ll~~~ 667 (1157)
T PRK11447 606 DLTLADWA----Q--QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD------LAAARAQLA------KLPATA 667 (1157)
T ss_pred HHHHHHHH----H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHH------HHhccC
Confidence 12222232 1 11122334567888889999998888888887765444 111221111 111111
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccc------hHHHHHHHHhhhcccCChHHHHHHH
Q 000307 1620 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPF------SIKLWKCYYDLSKTKGDLNTIVKAA 1682 (1690)
Q Consensus 1620 pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPf------S~~LW~~y~~~~k~~g~~~~ive~a 1682 (1690)
|- ...+|...|.++..+ |.-+-+..+|++|+...|= .+.+++..-.+....|..+..++.-
T Consensus 668 p~-~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAAL-GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CC-ChHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 224566666666554 4444458899999987652 3457776677778888886655553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-16 Score=198.33 Aligned_cols=311 Identities=11% Similarity=-0.021 Sum_probs=227.4
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHH
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1110 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mY 1110 (1690)
.+-+..+.+..........|+++.|+..|.+||+++|+++++++.++.+|+..++..+|..++++||+++|+|.++..+.
T Consensus 39 ~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 39 YRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 33344444333333334458899999999999999999999999999999999999999999999999999999966665
Q ss_pred HhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH--------HhhhcCHHHHHHHHHhhcccccC
Q 000307 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC--------FCMSGNTEKAIQRISRLLIPATG 1182 (1690)
Q Consensus 1111 INsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL--------Y~qSGnydKAI~tL~rLEq~Al~ 1182 (1690)
-..+ .|++|+..|+++++.+ |++ .|+++.++.+ |.+.+...+||. .+++. .+
T Consensus 119 a~i~--------~~~kA~~~ye~l~~~~-P~n-------~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~--~~ 178 (987)
T PRK09782 119 AAIP--------VEVKSVTTVEELLAQQ-KAC-------DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA--AS 178 (987)
T ss_pred HHhc--------cChhHHHHHHHHHHhC-CCC-------hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC--CC
Confidence 4446 9999999999999999 999 9999999998 999999999987 66665 44
Q ss_pred CCCcccccHHHHHHHhccCCcc-ch----hHHHHH--HHhhccccHHHHhhc-cchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1183 SNDRHSLFLSDILTCLTISDKL-IF----WVCCVY--LVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1183 G~sE~~lSLsKi~~YLt~sDkc-~A----wLc~iY--dl~YrvLPGd~y~qn-e~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
|... -+.|.+.++|+.++|-. .. .|+..+ ...|.+.++++|+++ +. +++..+ +...++ ++.-+.
T Consensus 179 ~~~~-vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al---~~~~lk---~d~~l~ 250 (987)
T PRK09782 179 PEGK-TLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL---QSQGIF---TDPQSR 250 (987)
T ss_pred CCcH-HHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH---hchhcc---cCHHHH
Confidence 5554 68999999999999944 33 677776 888999999999995 66 888888 666655 445555
Q ss_pred HHHHHHHHHhhcCCcchhhhhcccchhHHHH-------------------------------HHHHHHHH-hc------c
Q 000307 1255 IEMAVNSVELYSNGESLEKETNLRSAHCFAV-------------------------------NHIWCMAV-LN------G 1296 (1690)
Q Consensus 1255 ~smA~dYY~~~~ndEsla~~~n~k~d~~tKL-------------------------------N~IRq~I~-lE------d 1296 (1690)
..+| ++|.. .|+.+.+...=.+...|++. ++.+-.+. ++ +
T Consensus 251 ~ala-~~yi~-~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (987)
T PRK09782 251 ITYA-TALAY-RGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ 328 (987)
T ss_pred HHHH-HHHHH-CCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH
Confidence 5663 76776 77777776551112222111 11111110 11 2
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHhh-ccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1297 LECSMNLLEKYIKLYPSCLELVLMKARLQK-HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1297 se~al~LfdklLe~~P~d~eL~L~AayL~~-k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
+..+. .++...|.+.-+.+-.+++.. ++ -.++...|.......|.+.. .=.|+.-.++++|+.++|..+.
T Consensus 329 ~~~~~----~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~----~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 329 YDAAQ----KLLATLPANEMLEERYAVSVATRN-KAEALRLARLLYQQEPANLT----RLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred HHHHH----HHhcCCCcchHHHHHHhhccccCc-hhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcccHHHHHHHH
Confidence 23222 335555655544444444433 33 44666778888888898888 8888888999999999999999
Q ss_pred HHHHH
Q 000307 1376 DRWFH 1380 (1690)
Q Consensus 1376 ~~ff~ 1380 (1690)
+.-|.
T Consensus 400 ~~~~~ 404 (987)
T PRK09782 400 LQRYP 404 (987)
T ss_pred HHhcC
Confidence 88443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-16 Score=200.03 Aligned_cols=360 Identities=8% Similarity=-0.033 Sum_probs=251.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH------------------HHHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------------LWLMY 1110 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~------------------Lw~mY 1110 (1690)
.|++++|+..|.++|+++|+++++|+.++.+|.+++...+|.+.|++|++.+|++.. ++..|
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999998642 23456
Q ss_pred HhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCccccc
Q 000307 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1190 (1690)
Q Consensus 1111 INsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lS 1190 (1690)
+..+ .|++|+..|.+..+.. |+. .+.++.|.++|...|++++|+..+.+... ++..+. ...
T Consensus 362 ~~~g--------~~~eA~~~~~~Al~~~-P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~--~~p~~~-~a~ 422 (1157)
T PRK11447 362 LKAN--------NLAQAERLYQQARQVD-NTD-------SYAVLGLGDVAMARKDYAAAERYYQQALR--MDPGNT-NAV 422 (1157)
T ss_pred HHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHH
Confidence 6677 8999999999988887 777 67888999999999999999999988886 443443 222
Q ss_pred HHHHHHHhccCCccch--hHHH---HH-----------HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1191 LSDILTCLTISDKLIF--WVCC---VY-----------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1191 LsKi~~YLt~sDkc~A--wLc~---iY-----------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
.....+|... +...| ++-. .. ...--...+.++...|...+|... +.+.++.+|+++.++
T Consensus 423 ~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~---~~~Al~~~P~~~~~~ 498 (1157)
T PRK11447 423 RGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL---QRQRLALDPGSVWLT 498 (1157)
T ss_pred HHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHH
Confidence 2233344332 22333 2110 00 001112356677777788888887 788888888888877
Q ss_pred HHHHHHHHHhhcCCcchhhhh-------ccc-chhHHH------------------------------------------
Q 000307 1255 IEMAVNSVELYSNGESLEKET-------NLR-SAHCFA------------------------------------------ 1284 (1690)
Q Consensus 1255 ~smA~dYY~~~~ndEsla~~~-------n~k-~d~~tK------------------------------------------ 1284 (1690)
+.+|.-|+. .|+...+... .+. .+..+.
T Consensus 499 ~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 499 YRLAQDLRQ--AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 777633433 4444443332 010 000000
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1285 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1285 LN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
+.....+....+.++|+.++ +.+|.+..+ ..++..+...+..++|+..|+++++.+|+|.. +|+.++....
T Consensus 577 l~~a~~l~~~G~~~eA~~~l----~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~----a~~~la~~~~ 648 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALL----RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD----ARLGLIEVDI 648 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHH----HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Confidence 01111122222555555554 468999988 55666666666699999999999999999999 9999999999
Q ss_pred hcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHH
Q 000307 1364 QNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1430 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~L 1430 (1690)
..+++++|++.++. +..+.++.+. ..++|+..+++.....+.+........++ --+
T Consensus 649 ~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~-----------~~~ 717 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVL-----------RDA 717 (1157)
T ss_pred HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHH-----------HHH
Confidence 99999999999887 3345555554 88999999987655432111100111222 456
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHh
Q 000307 1431 NLSLHRLLQNDWNEARLAIDAALK 1454 (1690)
Q Consensus 1431 GD~Lyq~Lqg~~~EAf~AYDkALk 1454 (1690)
+.++.. +|+.++|...|.+||.
T Consensus 718 a~~~~~--~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQ--TGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHH--cCCHHHHHHHHHHHHh
Confidence 778888 9999999999999995
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=177.40 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=71.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|+|+.|+..|.+||+++|+ +.+|+.++..|..++...++.+.|.+|++++|++.. ++..|...+ .
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg--------~ 209 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG--------K 209 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------C
Confidence 348999999999999999996 789999999999999999999999999999998866 888999999 9
Q ss_pred HHHHHHHHHHh
Q 000307 1124 YDAALSVLCRC 1134 (1690)
Q Consensus 1124 YdrAI~aLe~l 1134 (1690)
|++|+..|...
T Consensus 210 ~~eA~~~~~~~ 220 (615)
T TIGR00990 210 YADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999888543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=176.75 Aligned_cols=306 Identities=11% Similarity=0.021 Sum_probs=201.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|++++|+..|.++++++|+++.+|+.++.+|.+++...+|.+.|++|++++|++.. ++..|...+ .++
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g--------~~~ 161 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD--------KEL 161 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--------ChH
Confidence 55566666666666666666666666666666666666666666666666665544 444555555 566
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|+.+|..+.... |+. .+++..++ .|...|++++|+..+.++.. .....
T Consensus 162 eA~~~~~~~~~~~-P~~-------~~a~~~~~-~l~~~g~~~eA~~~~~~~l~--~~~~~-------------------- 210 (656)
T PRK15174 162 QAISLARTQAQEV-PPR-------GDMIATCL-SFLNKSRLPEDHDLARALLP--FFALE-------------------- 210 (656)
T ss_pred HHHHHHHHHHHhC-CCC-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHh--cCCCc--------------------
Confidence 6666665554444 443 23332222 24455666666665555443 10000
Q ss_pred hhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH
Q 000307 1206 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV 1285 (1690)
Q Consensus 1206 AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL 1285 (1690)
...+..+.+..+...|...+|... +.+.+..+|+.+.+++.+|.-|+. .|+-. .
T Consensus 211 -------~~~~~~~l~~~l~~~g~~~eA~~~---~~~al~~~p~~~~~~~~Lg~~l~~--~G~~~--e------------ 264 (656)
T PRK15174 211 -------RQESAGLAVDTLCAVGKYQEAIQT---GESALARGLDGAALRRSLGLAYYQ--SGRSR--E------------ 264 (656)
T ss_pred -------chhHHHHHHHHHHHCCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHH--cCCch--h------------
Confidence 000112346677788999999988 888999999999999888744554 33211 0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh
Q 000307 1286 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1364 (1690)
Q Consensus 1286 N~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~ 1364 (1690)
....|+.+|+++++..|.++.+ ..++..+...+..++|+..|++++...|++.. +|..|......
T Consensus 265 ----------A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~----a~~~La~~l~~ 330 (656)
T PRK15174 265 ----------AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY----VRAMYARALRQ 330 (656)
T ss_pred ----------hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Confidence 0136888999999999999999 55566666666688999999999999999999 99999999999
Q ss_pred cCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1365 NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1365 ~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
.|++++|+..+++.. . ..+ . ....+ .+++.+|.+ .|+.+|
T Consensus 331 ~G~~~eA~~~l~~al--------------~--------~~P----~-~~~~~-----------~~~a~al~~--~G~~de 370 (656)
T PRK15174 331 VGQYTAASDEFVQLA--------------R--------EKG----V-TSKWN-----------RYAAAALLQ--AGKTSE 370 (656)
T ss_pred CCCHHHHHHHHHHHH--------------H--------hCc----c-chHHH-----------HHHHHHHHH--CCCHHH
Confidence 999999999875511 1 001 0 11223 456788888 899999
Q ss_pred HHHHHHHHHhhccC---CcHHHHHHHHHHHHhc
Q 000307 1445 ARLAIDAALKAAAS---EHFKHCVREHAMLLLI 1474 (1690)
Q Consensus 1445 Af~AYDkALk~np~---N~~i~cLNNYAYFLSl 1474 (1690)
|...|+++|+..|+ ..|..+...|.-++..
T Consensus 371 A~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 371 AESVFEHYIQARASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHhChhhchhhHHHHHHHHHHHHHh
Confidence 99999999998874 4455666667666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=172.62 Aligned_cols=380 Identities=8% Similarity=-0.041 Sum_probs=220.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|+.+.|+.++.+|+.++|..+.+|..++.+|...+.-.+|.+.|++|++++|+|-. ++.+++..+ .++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--------~~~ 100 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG--------QYD 100 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHH
Confidence 66788888888888888888888888888888888888888888888888888766 667777777 888
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|+.+|.+..+.+ |+. .+ ++.+..+|..+|++++|+..+.++.. ..-.++ ..-+.....+...++...
T Consensus 101 eA~~~l~~~l~~~-P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~-~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 101 EALVKAKQLVSGA-PDK-------AN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQ-QYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHHHHHHHhC-CCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHCCChHH
Confidence 8888888887777 776 66 77788888888888888888877775 222232 222222222222222222
Q ss_pred hhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCccc-ch----hhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccch
Q 000307 1206 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-ED----DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1280 (1690)
Q Consensus 1206 AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqv-lk----dEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d 1280 (1690)
| |. .+. .+..-|+ ..........+..+-+-+... .. ...+.|++.++.+...+.. + +...
T Consensus 169 A-l~-~l~-~~~~~p~-~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~---~--------p~~~ 233 (765)
T PRK10049 169 A-LG-AID-DANLTPA-EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD---N--------PDAT 233 (765)
T ss_pred H-HH-HHH-hCCCCHH-HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc---C--------Cccc
Confidence 2 00 000 0000111 000000000000000000000 00 0112333333332111110 0 1111
Q ss_pred hH---HHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHH
Q 000307 1281 HC---FAVNHIWCMAVLNGLECSMNLLEKYIKLYP---SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCI 1354 (1690)
Q Consensus 1281 ~~---tKLN~IRq~I~lEdse~al~LfdklLe~~P---~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qca 1354 (1690)
.. ..+..+..++...+.+.|+..|+++++..| ..+.+.+..+|+.+++ ++.|+..|++++...|.+..-..=.
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~-~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQ-PEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHhhcCCCCCCCChHH
Confidence 11 111112222334588999999999999974 4444566667777777 9999999999999999874311124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH----------------------------HhhhcccccccchhhcccCCCCCCC
Q 000307 1355 WNQYVEYALQNGRHDFAAELMDRWFHS----------------------------VWKVQYSQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1355 W~QLiq~Al~~e~~d~ai~L~~~ff~g----------------------------ia~~Q~~~deALD~lr~g~s~i~~e 1406 (1690)
+.+|....++.+++++|+.+++..... +...+...++|++++++.....+.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~- 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG- 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 566666678999999999997762221 111112666777777655433221
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchh
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPIS 1486 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS 1486 (1690)
..+.+ -.++.++-. .|+.++|...|++||+..|++ ...+-..|+ ..+...++++|+++=
T Consensus 392 -----n~~l~-----------~~lA~l~~~--~g~~~~A~~~l~~al~l~Pd~--~~l~~~~a~-~al~~~~~~~A~~~~ 450 (765)
T PRK10049 392 -----NQGLR-----------IDYASVLQA--RGWPRAAENELKKAEVLEPRN--INLEVEQAW-TALDLQEWRQMDVLT 450 (765)
T ss_pred -----CHHHH-----------HHHHHHHHh--cCCHHHHHHHHHHHHhhCCCC--hHHHHHHHH-HHHHhCCHHHHHHHH
Confidence 12222 455556666 778888888888888888877 666666666 334444566666644
Q ss_pred h
Q 000307 1487 W 1487 (1690)
Q Consensus 1487 ~ 1487 (1690)
.
T Consensus 451 ~ 451 (765)
T PRK10049 451 D 451 (765)
T ss_pred H
Confidence 3
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=168.97 Aligned_cols=358 Identities=10% Similarity=0.048 Sum_probs=259.0
Q ss_pred chhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-
Q 000307 1027 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1105 (1690)
Q Consensus 1027 ~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~- 1105 (1690)
.+...+.|..+|..+.++ |++++|+.+|.++|+.+|.++.+|+.++.++...+...+|.++++++++..|++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~ 119 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNL-----KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANL 119 (765)
T ss_pred CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344556677777777766 77899999999999999999999999999999999999999999999999999865
Q ss_pred --HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCC
Q 000307 1106 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1183 (1690)
Q Consensus 1106 --Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G 1183 (1690)
++.+|...+ .+++|+.+|++..+.. |+. .++++.++.++...|..++||..++++.. ...
T Consensus 120 ~~la~~l~~~g--------~~~~Al~~l~~al~~~-P~~-------~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~ 181 (765)
T PRK10049 120 LALAYVYKRAG--------RHWDELRAMTQALPRA-PQT-------QQYPTEYVQALRNNRLSAPALGAIDDANL--TPA 181 (765)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHH
Confidence 778888888 9999999999999998 888 88989999999999999999998887764 100
Q ss_pred CCc---ccccHHHHHHHhccCCcc----------ch---hHHHHH---------HHhhccc-cHHHHhhccchhhhhcCC
Q 000307 1184 NDR---HSLFLSDILTCLTISDKL----------IF---WVCCVY---------LVIYRKL-PDAVLQLLECEKELFAID 1237 (1690)
Q Consensus 1184 ~sE---~~lSLsKi~~YLt~sDkc----------~A---wLc~iY---------dl~YrvL-PGd~y~qne~~KEAf~I~ 1237 (1690)
... .......++.++...... ++ .+...+ ...++.. ++.+ ...+..++|...
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~- 259 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISE- 259 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHH-
Confidence 000 011223444444433211 11 222111 1111111 3444 455888999998
Q ss_pred CCCcccchhh---hhhHHHHHHHHHHHHHhhcCCcchhhhhcccc----------hhHHHHHHHHHHHHhcchHHHHHHH
Q 000307 1238 WPPVQLEDDE---KQRAIKLIEMAVNSVELYSNGESLEKETNLRS----------AHCFAVNHIWCMAVLNGLECSMNLL 1304 (1690)
Q Consensus 1238 W~yvqvlkdE---PdnalAL~smA~dYY~~~~ndEsla~~~n~k~----------d~~tKLN~IRq~I~lEdse~al~Lf 1304 (1690)
|.++++.. |+.+...+ | ++|-. .++.+.+...-.++ .......+..-++..++.++|+.++
T Consensus 260 --~~~ll~~~~~~P~~a~~~l--a-~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 260 --YQRLKAEGQIIPPWAQRWV--A-SAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred --HHHhhccCCCCCHHHHHHH--H-HHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888874 66655554 3 34443 66666555541111 1122233233333366999999999
Q ss_pred HHHHHhCCCcc---------------hh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCh
Q 000307 1305 EKYIKLYPSCL---------------EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1368 (1690)
Q Consensus 1305 dklLe~~P~d~---------------eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~ 1368 (1690)
+++++..|... ++ .+.+..+...+..++|+..|++++...|+|.. +|+.++......+++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQARGWP 409 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCH
Confidence 99999988432 33 56666677777799999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHH
Q 000307 1369 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1448 (1690)
Q Consensus 1369 d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~A 1448 (1690)
++|+.++++ |+. ..+ + ..+++ -.++..+-+ .+++++|...
T Consensus 410 ~~A~~~l~~--------------al~--------l~P----d-~~~l~-----------~~~a~~al~--~~~~~~A~~~ 449 (765)
T PRK10049 410 RAAENELKK--------------AEV--------LEP----R-NINLE-----------VEQAWTALD--LQEWRQMDVL 449 (765)
T ss_pred HHHHHHHHH--------------HHh--------hCC----C-ChHHH-----------HHHHHHHHH--hCCHHHHHHH
Confidence 999999855 222 111 0 12344 455667777 8999999999
Q ss_pred HHHHHhhccCC
Q 000307 1449 IDAALKAAASE 1459 (1690)
Q Consensus 1449 YDkALk~np~N 1459 (1690)
++++++..|++
T Consensus 450 ~~~ll~~~Pd~ 460 (765)
T PRK10049 450 TDDVVAREPQD 460 (765)
T ss_pred HHHHHHhCCCC
Confidence 99999999988
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-13 Score=166.25 Aligned_cols=351 Identities=12% Similarity=-0.006 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----- 1105 (1690)
...|..+|.-++.. |+++.|+..+.++|+++|+.+.+|+.++..|..++..++|...|..+..+++.+..
T Consensus 160 ~~~~~n~a~~~~~l-----~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 160 PVYYSNRAACHNAL-----GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred hHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45677777666554 88999999999999999999999999999999999999888777666555433221
Q ss_pred -----------------------------HHHHHHhcCCCc-----------c-----------------cchHHHHHHH
Q 000307 1106 -----------------------------LWLMYINSRTPL-----------N-----------------HRLDAYDAAL 1128 (1690)
Q Consensus 1106 -----------------------------Lw~mYINsr~s~-----------d-----------------drl~aYdrAI 1128 (1690)
++.++-..+... + .....|++|+
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 111111000000 0 0112578888
Q ss_pred HHHHHhhhcC--CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1129 SVLCRCASAS--DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1129 ~aLe~las~~--~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
.+|+...... .++. ...+..+..+|...|++++||..+.+... .++. .. .
T Consensus 315 ~~~~~al~~~~~~~~~-------a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----l~P~-~~----~----------- 366 (615)
T TIGR00990 315 RAFEKALDLGKLGEKE-------AIALNLRGTFKCLKGKHLEALADLSKSIE-----LDPR-VT----Q----------- 366 (615)
T ss_pred HHHHHHHhcCCCChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cH----H-----------
Confidence 8887766543 1333 56778888888899999999988877664 2331 10 0
Q ss_pred hHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcc-----cchh
Q 000307 1207 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNL-----RSAH 1281 (1690)
Q Consensus 1207 wLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~-----k~d~ 1281 (1690)
.....|.++...|...+|... +.++++.+|+++.+++.+| ..|.. .|+-+.+..... ..+.
T Consensus 367 ---------~~~~la~~~~~~g~~~eA~~~---~~~al~~~p~~~~~~~~lg-~~~~~-~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 367 ---------SYIKRASMNLELGDPDKAEED---FDKALKLNSEDPDIYYHRA-QLHFI-KGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred ---------HHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHcCccC
Confidence 111234555666677777776 6667777777776666665 33322 332222221100 0000
Q ss_pred HHHHHHHHHH-HHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCch---hHHHHH
Q 000307 1282 CFAVNHIWCM-AVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG---IQCIWN 1356 (1690)
Q Consensus 1282 ~tKLN~IRq~-I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g---~qcaW~ 1356 (1690)
......+... ..+.+.+.|+.+|+++++..|.+.++ ..++..+...+-.++|+..|++++.++|++.+- ..-.++
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 0000001111 11235555566666666666655555 222222222222455555566666665554430 000111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHH
Q 000307 1357 QYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR 1436 (1690)
Q Consensus 1357 QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq 1436 (1690)
..+...-..+++++|+.++ .+.... .+ +.. ..+-.||.+|++
T Consensus 513 ~a~~~~~~~~~~~eA~~~~---------------------~kAl~l-~p--------~~~--------~a~~~la~~~~~ 554 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLC---------------------EKALII-DP--------ECD--------IAVATMAQLLLQ 554 (615)
T ss_pred HHHHHHHHhhhHHHHHHHH---------------------HHHHhc-CC--------CcH--------HHHHHHHHHHHH
Confidence 1111111124444444444 322111 11 100 122567889999
Q ss_pred hhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000307 1437 LLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1470 (1690)
Q Consensus 1437 ~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAY 1470 (1690)
.|+.+||...|++|++..+.. ...++.+.|
T Consensus 555 --~g~~~eAi~~~e~A~~l~~~~--~e~~~a~~~ 584 (615)
T TIGR00990 555 --QGDVDEALKLFERAAELARTE--GELVQAISY 584 (615)
T ss_pred --ccCHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 999999999999999998875 444444444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-13 Score=164.25 Aligned_cols=270 Identities=9% Similarity=-0.022 Sum_probs=179.1
Q ss_pred hhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
++..|.+.+.|+.+|..++.. |++++|+..|.++++++|+++.+|+.++.+|...+...++..+++++++..|++
T Consensus 103 l~~~P~~~~a~~~la~~l~~~-----g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 103 LAVNVCQPEDVLLVASVLLKS-----KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred HHhCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 344556678888888777765 789999999999999999999999999999999999999999999999999988
Q ss_pred HHHH---HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccc
Q 000307 1104 YALW---LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1180 (1690)
Q Consensus 1104 Y~Lw---~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~A 1180 (1690)
-..+ ..|+..+ .|++|+.+|..+......+. ......++.+|...|++++|+..+.+...
T Consensus 178 ~~a~~~~~~l~~~g--------~~~eA~~~~~~~l~~~~~~~-------~~~~~~l~~~l~~~g~~~eA~~~~~~al~-- 240 (656)
T PRK15174 178 GDMIATCLSFLNKS--------RLPEDHDLARALLPFFALER-------QESAGLAVDTLCAVGKYQEAIQTGESALA-- 240 (656)
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 6622 3577777 89999999988766652233 23445667889999999999998888775
Q ss_pred cCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhh----hhcCCCCCcccchhhhhhHHHHHH
Q 000307 1181 TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKE----LFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1181 l~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KE----Af~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
. .+. ....+..+|..|...|...+ |... +.++++.+|+++.++..
T Consensus 241 ~---~p~-------------------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~---~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 241 R---GLD-------------------------GAALRRSLGLAYYQSGRSREAKLQAAEH---WRHALQFNSDNVRIVTL 289 (656)
T ss_pred c---CCC-------------------------CHHHHHHHHHHHHHcCCchhhHHHHHHH---HHHHHhhCCCCHHHHHH
Confidence 2 221 01122346777888887665 6778 88888889999888888
Q ss_pred HHHHHHHhhcCCcchhhhh-------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhcc
Q 000307 1257 MAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD 1328 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~-------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~ 1328 (1690)
+| ..|.. .|+-+.+... ++.. ...-.++-..+....+.+.|+..|+++++..|..... ...+.-+...+
T Consensus 290 lg-~~l~~-~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 290 YA-DALIR-TGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HH-HHHHH-CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 86 44433 3432222221 1110 0111121222222345555555555555555555444 22222233333
Q ss_pred CCCccHHHHHHHHHhCCCCCc
Q 000307 1329 FGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1329 m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
..++|+..|++++++.|++.+
T Consensus 367 ~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 367 KTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred CHHHHHHHHHHHHHhChhhch
Confidence 355555555555555555543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=146.07 Aligned_cols=295 Identities=15% Similarity=0.113 Sum_probs=210.5
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC--------
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------- 1103 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N-------- 1103 (1690)
..+.-+++.++.+ |+++.|+..|.++++.+|.++++|+.++.+|...+...++...++++++..+..
T Consensus 36 ~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 36 SRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred cHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3333344444433 678999999999999999999999999999999999999999999999865332
Q ss_pred HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCC
Q 000307 1104 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1183 (1690)
Q Consensus 1104 Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G 1183 (1690)
+.|+..|...+ .|++|+.+|.++.... +.. .+++..++.+|..+|++++|+..+.++.. ...
T Consensus 111 ~~La~~~~~~g--------~~~~A~~~~~~~l~~~-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~ 172 (389)
T PRK11788 111 QELGQDYLKAG--------LLDRAEELFLQLVDEG-DFA-------EGALQQLLEIYQQEKDWQKAIDVAERLEK--LGG 172 (389)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCC-cch-------HHHHHHHHHHHHHhchHHHHHHHHHHHHH--hcC
Confidence 12789999999 9999999999987765 555 68899999999999999999999888774 111
Q ss_pred CCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHH
Q 000307 1184 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1184 ~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~ 1263 (1690)
.+. .. ....|....+..+...|..++|... +.+.++.+|+...+.+.+| ..|.
T Consensus 173 ~~~-~~----------------------~~~~~~~~la~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~la-~~~~ 225 (389)
T PRK11788 173 DSL-RV----------------------EIAHFYCELAQQALARGDLDAARAL---LKKALAADPQCVRASILLG-DLAL 225 (389)
T ss_pred Ccc-hH----------------------HHHHHHHHHHHHHHhCCCHHHHHHH---HHHHHhHCcCCHHHHHHHH-HHHH
Confidence 111 00 0111222356667777888888777 7777777788777777775 5444
Q ss_pred hhcCCcchhhhhcccch----hH--HHH-HHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHH
Q 000307 1264 LYSNGESLEKETNLRSA----HC--FAV-NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1336 (1690)
Q Consensus 1264 ~~~ndEsla~~~n~k~d----~~--tKL-N~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~v 1336 (1690)
. .|+...+...-.++. .. ..+ .+...+....+.+.++.+|+++++.+|....+...+..+...+..++|+..
T Consensus 226 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 226 A-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred H-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 3 454444443311111 00 111 222333445689999999999999999775555555555555558899999
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHH
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSV 1382 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~---~e~~d~ai~L~~~ff~gi 1382 (1690)
|++++...|++.. +..++..++. .++.++++.+++++..-.
T Consensus 305 l~~~l~~~P~~~~-----~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 305 LREQLRRHPSLRG-----FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHhCcCHHH-----HHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9999999999876 4455555543 458889999998866543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-11 Score=152.06 Aligned_cols=383 Identities=12% Similarity=0.006 Sum_probs=248.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--H--HHHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--L--WLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--L--w~mYINsr~s~ddrl~aY 1124 (1690)
.|+++.|++.|.+||+++|.++.+.+.++.+|...++..+|...|++|+.-.|.+|. + +..|.+.+ .|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--------dy 118 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK--------RW 118 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CH
Confidence 488999999999999999999755559999999999999999999999955556666 4 66999999 99
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhc---cC
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT---IS 1201 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt---~s 1201 (1690)
++|+++|+++.+.+ |+. .++++.|+.+|...|++++|+..+.++++ .++.. ...+.+.|+. .+
T Consensus 119 d~Aiely~kaL~~d-P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~----~~~l~layL~~~~~~ 184 (822)
T PRK14574 119 DQALALWQSSLKKD-PTN-------PDLISGMIMTQADAGRGGVVLKQATELAE--RDPTV----QNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHHHhhC-CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcch----HHHHHHHHHHHhcch
Confidence 99999999999998 998 89999999999999999999999999997 44443 3345666666 33
Q ss_pred Cccch----hHHHHH--HHhhccccHHHHhhccchhhhhcCCCCCcccc------hhhhhhHHHHHHHHHHHHHhhcC--
Q 000307 1202 DKLIF----WVCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLE------DDEKQRAIKLIEMAVNSVELYSN-- 1267 (1690)
Q Consensus 1202 Dkc~A----wLc~iY--dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvl------kdEPdnalAL~smA~dYY~~~~n-- 1267 (1690)
....+ .++..+ ...|-...-..+-.+|-..-|+.+-+.+..+. -.+-+.+..++..| ..... ..
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a-~~~~~-~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA-VLPTR-SETE 262 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc-ccccc-cchh
Confidence 32211 444444 44444444455555554444444322222221 11222233333221 00000 00
Q ss_pred -----Ccchhhhh-----cccchhH----HHH--HHHHHHHHhcchHHHHHHHHHHHHhC---CCcchhHHHHHHHhhcc
Q 000307 1268 -----GESLEKET-----NLRSAHC----FAV--NHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKHD 1328 (1690)
Q Consensus 1268 -----dEsla~~~-----n~k~d~~----tKL--N~IRq~I~lEdse~al~LfdklLe~~---P~d~eL~L~AayL~~k~ 1328 (1690)
|..++..+ -.+.+.. +.. -.|.-+....+...|+..++.+-... |.-+.-.+..+||....
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 00011100 0111111 111 22222222558999999999998665 66666699999998888
Q ss_pred CCCccHHHHHHHHHhCCCCCc-hhHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCC
Q 000307 1329 FGDLSSVGFEEALIKWPKGVP-GIQCI-WNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1329 m~e~Ai~vfe~aL~~~PkNa~-g~qca-W~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~e 1406 (1690)
|+.|..+|++++.-.|...+ ...-. -.-|.--.++.+++++|..++..+-.. .++ -...+ .++..+
T Consensus 343 -P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-----~p~--~~~~~-~~~~~~--- 410 (822)
T PRK14574 343 -PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ-----TPY--QVGVY-GLPGKE--- 410 (822)
T ss_pred -cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CCc--EEecc-CCCCCC---
Confidence 99999999999998753211 11111 234566778999999999999774210 010 00001 112222
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1484 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEq 1484 (1690)
-+.|.. - ++...+.+....|++.+|...+|+.+..+|.| ..+++.+|-..+-.+. ...|++
T Consensus 411 ----pn~d~~--------~--~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~-p~~A~~ 471 (822)
T PRK14574 411 ----PNDDWI--------E--GQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDL-PRKAEQ 471 (822)
T ss_pred ----CCccHH--------H--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC-HHHHHH
Confidence 234522 1 23334444455899999999999999999999 9999999998877664 444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=148.70 Aligned_cols=186 Identities=6% Similarity=-0.037 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1298 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1298 e~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
++|+..+.+++...|.+......+..+...+..++|+..|++++...|.+ + .|.++...+++.|+++.|+..+++
T Consensus 493 ~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----DLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34666666666666654432222222233333666677777766654443 3 467777777778888888877765
Q ss_pred ----------HHHHHhhhc---ccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1378 ----------WFHSVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1378 ----------ff~gia~~Q---~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
.+..++..+ ...++|+..+++....-+ . .+.| .-+|.+|.+ .|+.+|
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~--~~a~-----------~~LA~~l~~--lG~~de 627 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S--ANAY-----------VARATIYRQ--RHNVPA 627 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C--HHHH-----------HHHHHHHHH--CCCHHH
Confidence 122233333 477888888876654321 1 3445 667889999 999999
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc--cchhhh
Q 000307 1445 ARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL--LPRQFI 1513 (1690)
Q Consensus 1445 Af~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV------sTYLDT-AWILf~~~~--lARiYI 1513 (1690)
|..+|++||..+|++ ...+++++++|...+ +.++|..+-. +.+ ..++.. ||++...++ +|..++
T Consensus 628 A~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G-~~eeAi~~l~--~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 628 AVSDLRAALELEPNN--SNYQAALGYALWDSG-DIAQSREMLE--RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHCC-CHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999 899999999988765 4666666444 555 455555 999999999 888888
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-09 Score=131.95 Aligned_cols=579 Identities=19% Similarity=0.224 Sum_probs=332.1
Q ss_pred CCCccccccccccchhhhhhhhhhhccCccccccccccccccccCCCCCCccc--ccCCCCcceec---CCccccccccc
Q 000307 941 TPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADL--SLIGDGRIECI---GSWNRQSSFFR 1015 (1690)
Q Consensus 941 ~~pty~v~~d~m~~Dq~a~k~~r~~rp~q~wqK~~s~s~a~s~~~q~~~p~d~--~~~~d~ri~~~---~~~~~~~rYF~ 1015 (1690)
..||++-....++--.+++||+|+--|. |...=.|+-..+-..+-... ..+-.|+=+++ |-|=+..|-+-
T Consensus 256 m~p~~~~dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp 330 (913)
T KOG0495|consen 256 MIPTSGGDLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHP 330 (913)
T ss_pred cCCCccCcHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCC
Confidence 4688888888888777889999998774 44444444333322221111 11112222222 33333333333
Q ss_pred cch---hhhhhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHH
Q 000307 1016 SRN---GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1092 (1690)
Q Consensus 1016 ~~~---d~in~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~em 1092 (1690)
.+. =+.+-+.--|+++.||++.|-. .. ....=.-+|.+|||..|++.-+|-.--.+ ..++.|.-|
T Consensus 331 ~d~aK~vvA~Avr~~P~Sv~lW~kA~dL--E~------~~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~daril 398 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFLPTSVRLWLKAADL--ES------DTKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARIL 398 (913)
T ss_pred hHHHHHHHHHHHHhCCCChhhhhhHHhh--hh------HHHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHH
Confidence 222 1123344456777777776632 11 12334568999999999999999776666 667778899
Q ss_pred HHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000307 1093 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1172 (1690)
Q Consensus 1093 fekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~t 1172 (1690)
+++||+.-|.+..||.-|-+++ -|+.|-.+|-..-..- |.. -++-+.-+-|--..|++++.-..
T Consensus 399 L~rAveccp~s~dLwlAlarLe--------tYenAkkvLNkaRe~i-ptd-------~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 399 LERAVECCPQSMDLWLALARLE--------TYENAKKVLNKAREII-PTD-------REIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHHHhccchHHHHHHHHHHH--------HHHHHHHHHHHHHhhC-CCC-------hhHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999988 8999988884433333 332 25555666677788888877666
Q ss_pred HHhhcc-cccCCCC-cccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCC-Ccccchhhh-
Q 000307 1173 ISRLLI-PATGSND-RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWP-PVQLEDDEK- 1248 (1690)
Q Consensus 1173 L~rLEq-~Al~G~s-E~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~-yvqvlkdEP- 1248 (1690)
|+|=.. -..+|.. .++-.|+....|.+.+ + -++|- -|+|-++ --|+..|-..-.|- -.+..+..|
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag--s--v~TcQ-AIi~avi------gigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAG--S--VITCQ-AIIRAVI------GIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcC--C--hhhHH-HHHHHHH------hhccccchhHhHHhhhHHHHHhcch
Confidence 654321 0122211 1122333444444331 1 11221 2222211 11222222222221 001111111
Q ss_pred -hhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHH-Hhc----chHHHHHHHHHHHHhCCCcchh-HHHH
Q 000307 1249 -QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMA-VLN----GLECSMNLLEKYIKLYPSCLEL-VLMK 1321 (1690)
Q Consensus 1249 -dnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I-~lE----dse~al~LfdklLe~~P~d~eL-~L~A 1321 (1690)
+-+.|++..|+.-|- +-| . |..-+ .+| ..++...||.++++.+|....| +|++
T Consensus 532 ~~carAVya~alqvfp------------------~k~-s-lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~a 591 (913)
T KOG0495|consen 532 IECARAVYAHALQVFP------------------CKK-S-LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYA 591 (913)
T ss_pred HHHHHHHHHHHHhhcc------------------chh-H-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 112222222211111 111 1 11111 133 6678888999999999988888 4444
Q ss_pred HHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH----------HHHHHh--hhcccc
Q 000307 1322 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR----------WFHSVW--KVQYSQ 1389 (1690)
Q Consensus 1322 ayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~----------ff~gia--~~Q~~~ 1389 (1690)
.--.+.+-.-.|...+.+||+.+|++.. ||.--+....+...++.|..++.+ ||.++- .+|...
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnsee----iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEE----IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHH----HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhH
Confidence 4444444355777999999999999999 999999999999999999999877 777743 445588
Q ss_pred cccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000307 1390 VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1469 (1690)
Q Consensus 1390 deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYA 1469 (1690)
++|+..+..+..+. .||. -+|-++|.++++ +++.+-|.+||..-++.-|.- +..|-=-|
T Consensus 668 eeA~rllEe~lk~f---------p~f~--------Kl~lmlGQi~e~--~~~ie~aR~aY~~G~k~cP~~--ipLWllLa 726 (913)
T KOG0495|consen 668 EEALRLLEEALKSF---------PDFH--------KLWLMLGQIEEQ--MENIEMAREAYLQGTKKCPNS--IPLWLLLA 726 (913)
T ss_pred HHHHHHHHHHHHhC---------CchH--------HHHHHHhHHHHH--HHHHHHHHHHHHhccccCCCC--chHHHHHH
Confidence 89999987776655 3543 445889999999 999999999999999999987 77764222
Q ss_pred HHHhcCCC--CCCcccchhhhHHHHHHHHhhhcccccccc-cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhc
Q 000307 1470 MLLLINES--EPKEGAPISWQLKLLNSYLDRARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVC 1546 (1690)
Q Consensus 1470 YFLSle~~--dL~KAEqMS~~~KtVsTYLDTAWILf~~~~-lARiYI~~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W 1546 (1690)
-. +.+ ++-+| -.-||+|.. +-| -+-.|| ++-|+ +...++-.--.-.+-+||+-|
T Consensus 727 kl---eEk~~~~~rA----------R~ildrarl---kNPk~~~lwl---e~Ir~----ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 727 KL---EEKDGQLVRA----------RSILDRARL---KNPKNALLWL---ESIRM----ELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HH---HHHhcchhhH----------HHHHHHHHh---cCCCcchhHH---HHHHH----HHHcCCHHHHHHHHHHHHHhC
Confidence 11 111 11111 224555432 111 233343 12222 334444221122556677766
Q ss_pred cCCCC-------cccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000307 1547 YGPSL-------LPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1619 (1690)
Q Consensus 1547 ~g~sl-------LpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fwA~s~l~nai~~a~ 1619 (1690)
-++.+ |..+-+ +| ..|+.++. ---+|..+-|+|+|++=.+-.
T Consensus 784 p~sg~LWaEaI~le~~~~-rk--Tks~DALk-kce~dphVllaia~lfw~e~k--------------------------- 832 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQ-RK--TKSIDALK-KCEHDPHVLLAIAKLFWSEKK--------------------------- 832 (913)
T ss_pred CccchhHHHHHHhccCcc-cc--hHHHHHHH-hccCCchhHHHHHHHHHHHHH---------------------------
Confidence 22222 111111 11 23444432 223455555555555433333
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcccCCh---HHHHHHHH
Q 000307 1620 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL---NTIVKAAR 1683 (1690)
Q Consensus 1620 pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~~g~~---~~ive~ar 1683 (1690)
++. ++-.|-||+-+=|=--.-|-=+|.|+..+|.- .+++.+|-
T Consensus 833 --------------------~~k-ar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 833 --------------------IEK-AREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred --------------------HHH-HHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 222 26667789989888888999999999999965 66666664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=130.94 Aligned_cols=266 Identities=13% Similarity=0.089 Sum_probs=192.9
Q ss_pred hchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1026 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1026 ~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS----AeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
..+.+.+.|..+|..++.+ |+++.|+.++.++++..+.. ..+|+.++.+|...+....|...|+++++.+|
T Consensus 64 ~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 64 VDPETVELHLALGNLFRRR-----GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred cCcccHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence 3456668888888877765 78899999999999865433 36899999999999999999999999999988
Q ss_pred CCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1102 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1102 ~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.+.. ++.+|...+ .|++|++.|..+.... ++. ....+...+..++.+|..+|++++|+..+.++.
T Consensus 139 ~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 139 FAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLG-GDS--LRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred chHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhc-CCc--chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7765 788999999 9999999999988765 432 122344556788999999999999999888877
Q ss_pred ccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHH-HHHH
Q 000307 1178 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-KLIE 1256 (1690)
Q Consensus 1178 q~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnal-AL~s 1256 (1690)
. ..+. . .....+++.+|...|..++|..+ +.++++.+|++.. ++..
T Consensus 208 ~-----~~p~-~------------------------~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 208 A-----ADPQ-C------------------------VRASILLGDLALAQGDYAAAIEA---LERVEEQDPEYLSEVLPK 254 (389)
T ss_pred h-----HCcC-C------------------------HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHChhhHHHHHHH
Confidence 4 2221 0 01123467888888999999988 8888888887743 3444
Q ss_pred HHHHHHHhhcCCcchhhhh-----cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhcc--
Q 000307 1257 MAVNSVELYSNGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD-- 1328 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~-----n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~-- 1328 (1690)
++ ..|.. .|+.+.+... ....+....+.+...+....+.+.|+.+|+++++.+|++..+ .|+..++...+
T Consensus 255 l~-~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 255 LM-ECYQA-LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HH-HHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 53 44443 4544444333 111111222333333444669999999999999999999998 67777775442
Q ss_pred CCCccHHHHHHHHH
Q 000307 1329 FGDLSSVGFEEALI 1342 (1690)
Q Consensus 1329 m~e~Ai~vfe~aL~ 1342 (1690)
...+++.+|++.+.
T Consensus 333 ~~~~a~~~~~~~~~ 346 (389)
T PRK11788 333 RAKESLLLLRDLVG 346 (389)
T ss_pred cchhHHHHHHHHHH
Confidence 46678877877765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-12 Score=141.01 Aligned_cols=259 Identities=17% Similarity=0.136 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRAL-EA-DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrAL-EI-NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---- 1105 (1690)
...+.+|-.++.. |++++|+.+|.+.+ .+ +|++++.|..++.+...++....+.+++++.++.++.+-.
T Consensus 9 ~~~l~~A~~~~~~-----~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~ 83 (280)
T PF13429_consen 9 EEALRLARLLYQR-----GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456677666654 88899999996655 55 5999999999999999999999999999999999987655
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
|..+ +..+ .|++|+.+++.....+ ++ .+.+..++++|...|+++++...|.+++. .....
T Consensus 84 l~~l-~~~~--------~~~~A~~~~~~~~~~~-~~--------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~ 143 (280)
T PF13429_consen 84 LIQL-LQDG--------DPEEALKLAEKAYERD-GD--------PRYLLSALQLYYRLGDYDEAEELLEKLEE--LPAAP 143 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH---T---
T ss_pred cccc-cccc--------cccccccccccccccc-cc--------cchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCCC
Confidence 3333 4555 8999999998777665 43 36677888999999999999998888774 11111
Q ss_pred cccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhh
Q 000307 1186 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1265 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~ 1265 (1690)
....|-.+.|.++.+.|..++|..+ +.++++.+|++..++..++ ..+-.
T Consensus 144 --------------------------~~~~~~~~~a~~~~~~G~~~~A~~~---~~~al~~~P~~~~~~~~l~-~~li~- 192 (280)
T PF13429_consen 144 --------------------------DSARFWLALAEIYEQLGDPDKALRD---YRKALELDPDDPDARNALA-WLLID- 192 (280)
T ss_dssp --------------------------T-HHHHHHHHHHHHHCCHHHHHHHH---HHHHHHH-TT-HHHHHHHH-HHHCT-
T ss_pred --------------------------CCHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHcCCCCHHHHHHHH-HHHHH-
Confidence 1223445668899999999999999 9999999999999888885 22221
Q ss_pred cCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1266 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1266 ~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
.| +.+++..++..+.+..|.+..+ .|..+|+..+. +++|+..|++++..
T Consensus 193 ~~----------------------------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 193 MG----------------------------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKL 243 (280)
T ss_dssp TC----------------------------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred CC----------------------------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccc
Confidence 22 3445667778888888999999 77777777776 89999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1379 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff 1379 (1690)
+|++.. +...|+..+...|+.++|.++-++.+
T Consensus 244 ~p~d~~----~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 NPDDPL----WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp STT-HH----HHHHHHHHHT----------------
T ss_pred cccccc----cccccccccccccccccccccccccc
Confidence 999999 99999999999999999999877633
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-09 Score=133.75 Aligned_cols=470 Identities=14% Similarity=0.135 Sum_probs=293.1
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC-------
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN------- 1100 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVela------- 1100 (1690)
|..+..-|-|+...|++.. ++.|+.|+.+|++|..+||.+|.|+.+++.+|+..++-+.+....++|++..
T Consensus 230 p~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 4778888888888887754 3789999999999999999999999999999999999999999999999877
Q ss_pred CCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccc
Q 000307 1101 EGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1180 (1690)
Q Consensus 1101 P~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~A 1180 (1690)
...||++-+|=.++ +|++|-..|.+-...+ +|. . +=.++=+.|.|...|++..++.+..++..
T Consensus 308 es~Y~~gRs~Ha~G--------d~ekA~~yY~~s~k~~-~d~-----~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k-- 370 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQG--------DFEKAFKYYMESLKAD-NDN-----F-VLPLVGLGQMYIKRGDLEESKFCFEKVLK-- 370 (1018)
T ss_pred HHHHHHHHHHHhhc--------cHHHHHHHHHHHHccC-CCC-----c-cccccchhHHHHHhchHHHHHHHHHHHHH--
Confidence 23577999999999 9999999996665555 443 2 22567789999999999999999888875
Q ss_pred cCCCCcccccHHHHHHHhccCC-cc--chhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCccc-chhhhhhHHHHHH
Q 000307 1181 TGSNDRHSLFLSDILTCLTISD-KL--IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-EDDEKQRAIKLIE 1256 (1690)
Q Consensus 1181 l~G~sE~~lSLsKi~~YLt~sD-kc--~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqv-lkdEPdnalAL~s 1256 (1690)
.+|...-.-+|.-||-... +| +...+-.| .|...-+.-+.-+||.. ..++ ...||.-.+-.+.
T Consensus 371 ---~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~-------l~K~~~~~~~d~~a~l~---laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 371 ---QLPNNYETMKILGCLYAHSAKKQEKRDKASNV-------LGKVLEQTPVDSEAWLE---LAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred ---hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH-------HHHHHhcccccHHHHHH---HHHHHHhcChHHHHHHHH
Confidence 2221111224443333333 11 22222222 23333333444444332 2222 3467777777777
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHH-hcchHHHHHHHHHHHHh-----CCCc---chh---HHHHHHH
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKL-----YPSC---LEL---VLMKARL 1324 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~-lEdse~al~LfdklLe~-----~P~d---~eL---~L~AayL 1324 (1690)
+|.+.+.. .+.. ...+ -+|-+.++-. +...+.|...|++.+.. .++. +.| -.+|.-+
T Consensus 438 ~A~d~L~~-~~~~-ip~E---------~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 438 NALDILES-KGKQ-IPPE---------VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred HHHHHHHH-cCCC-CCHH---------HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 77666653 2211 1111 1233444433 55778888888887766 2222 222 3344455
Q ss_pred hhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccc
Q 000307 1325 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVE 1391 (1690)
Q Consensus 1325 ~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~de 1391 (1690)
..-++.+.|-..|..+|...|.-.- ++.-|+-.+..+++..+++..+.. =|.|.++.-+ ...-
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId----~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYID----AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHH----HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 5555677777888888888887666 666677777777888888877776 3455555444 3333
Q ss_pred cchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHH--HHHHhhh----------cChHHHHHHHHHHHhhccCC
Q 000307 1392 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQ----------NDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1392 ALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lq----------g~~~EAf~AYDkALk~np~N 1459 (1690)
|-+.+......... ..|-| ++|++ .+.+-|+ +..+.|+..|.++|+-.|.|
T Consensus 583 a~k~f~~i~~~~~~------~~D~Y-----------sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN 645 (1018)
T KOG2002|consen 583 AKKKFETILKKTST------KTDAY-----------SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKN 645 (1018)
T ss_pred cccHHHHHHhhhcc------CCchh-----------HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcch
Confidence 33333322222211 16888 66665 4444333 34678999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH--------HHHHhhhcccccccccchhhhccccchhhHHHHhhhcCC
Q 000307 1460 HFKHCVREHAMLLLINESEPKEGAPISWQLKLL--------NSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSP 1531 (1690)
Q Consensus 1460 ~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV--------sTYLDTAWILf~~~~lARiYI~~i~k~rv~~liDqaL~~ 1531 (1690)
+.|=|=-+--|+..+. +.+|-. .|.-| .+||+-|-+++.++ .|+. --|.-++.|+.
T Consensus 646 --~yAANGIgiVLA~kg~-~~~A~d---IFsqVrEa~~~~~dv~lNlah~~~e~~----qy~~------AIqmYe~~lkk 709 (1018)
T KOG2002|consen 646 --MYAANGIGIVLAEKGR-FSEARD---IFSQVREATSDFEDVWLNLAHCYVEQG----QYRL------AIQMYENCLKK 709 (1018)
T ss_pred --hhhccchhhhhhhccC-chHHHH---HHHHHHHHHhhCCceeeeHHHHHHHHH----HHHH------HHHHHHHHHHH
Confidence 8888888888887663 666655 44333 22333344555553 3331 11222344444
Q ss_pred C--CCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHH
Q 000307 1532 V--SSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVF 1584 (1690)
Q Consensus 1532 ~--S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~ 1584 (1690)
. ..++....---+.|+.... -+.-+.-+...++..|+|+.|-+-++
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence 1 2223333334445642211 12234666777899999988665444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=154.26 Aligned_cols=136 Identities=8% Similarity=-0.004 Sum_probs=111.9
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcccCCCCCCC
Q 000307 1340 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1340 aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~e 1406 (1690)
+....|.|.. +|.|||..+...+++++|+++|++ ||+|+-++|. ..+++.-+ .+..-.+.+
T Consensus 23 ~~~~~p~n~~----a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 23 ANNYSLSKFK----ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred cccCCcchHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4567899999 999999999999999999999999 8899977777 55555544 233333445
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHh-----------hhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcC
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRL-----------LQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLIN 1475 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~-----------Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle 1475 (1690)
.+..+++++| ..|++.+++- -.|+.++|+++||++|+++|.| .+||||||||++..
T Consensus 97 ~~~~~ve~~~-----------~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~ 163 (906)
T PRK14720 97 LKWAIVEHIC-----------DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE 163 (906)
T ss_pred cchhHHHHHH-----------HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh
Confidence 5567788877 4444444440 0599999999999999999999 99999999999999
Q ss_pred CCCCCcccchhhhHHHHHHHHhh
Q 000307 1476 ESEPKEGAPISWQLKLLNSYLDR 1498 (1690)
Q Consensus 1476 ~~dL~KAEqMS~~~KtVsTYLDT 1498 (1690)
+|+||.+|+. |+|.+|+|+
T Consensus 164 --dL~KA~~m~~--KAV~~~i~~ 182 (906)
T PRK14720 164 --DKEKAITYLK--KAIYRFIKK 182 (906)
T ss_pred --hHHHHHHHHH--HHHHHHHhh
Confidence 9999999999 999999997
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-10 Score=140.03 Aligned_cols=303 Identities=15% Similarity=0.064 Sum_probs=204.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-HHHHHHh--cCCCcccchHHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYIN--SRTPLNHRLDAYDA 1126 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-Lw~mYIN--sr~s~ddrl~aYdr 1126 (1690)
|+|++|+.+|.++|+.+|+++++++.++.+|...++.++|.+.++++++.+|.+.+ +...|+. .+ .+.+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~--------~~~~ 187 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATD--------RNYD 187 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcc--------hHHH
Confidence 78999999999999999999999999999999999999999999999999999888 5555555 44 5656
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccc--------------------c---cCC
Q 000307 1127 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP--------------------A---TGS 1183 (1690)
Q Consensus 1127 AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~--------------------A---l~G 1183 (1690)
||..|+++...+ |+. .++++.++..+...|-...|++-+..--.. + ...
T Consensus 188 AL~~~ekll~~~-P~n-------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 188 ALQASSEAVRLA-PTS-------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999998 998 899999998888888888887654422210 0 001
Q ss_pred CCcc----cccHHHHHHHhc---cC------------Cccch--------hHHHHH--HHhhc-ccc-------HHHHhh
Q 000307 1184 NDRH----SLFLSDILTCLT---IS------------DKLIF--------WVCCVY--LVIYR-KLP-------DAVLQL 1226 (1690)
Q Consensus 1184 ~sE~----~lSLsKi~~YLt---~s------------Dkc~A--------wLc~iY--dl~Yr-vLP-------Gd~y~q 1226 (1690)
..|+ +-+|+.+..++. .. |+-.| -++..| +-... .|| ++-|+-
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1110 113444444443 10 11111 333333 11111 222 567888
Q ss_pred ccchhhhhcCCCCCcccchhhh------hhHHHHHHHHHHHHHhhcCCcchhhhh----cc-------------cch---
Q 000307 1227 LECEKELFAIDWPPVQLEDDEK------QRAIKLIEMAVNSVELYSNGESLEKET----NL-------------RSA--- 1280 (1690)
Q Consensus 1227 ne~~KEAf~I~W~yvqvlkdEP------dnalAL~smA~dYY~~~~ndEsla~~~----n~-------------k~d--- 1280 (1690)
.+.+.+|..| |.+++..+| ..+.....+.+.|.++ ++-+.+... .. +++
T Consensus 340 ~~~P~kA~~l---~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~--e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 340 RRLPEKAAPI---LSSLYYSDGKTFRNSDDLLDADDLYYSLNES--EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred cCCcHHHHHH---HHHHhhccccccCCCcchHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 8889999998 888877653 2232233333333331 111111111 00 011
Q ss_pred h-HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHH
Q 000307 1281 H-CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1358 (1690)
Q Consensus 1281 ~-~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QL 1358 (1690)
= +....++..++...+..+|..++++++..-|.+..| ..+|......+-|..|...++.++.++|++.. +..++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~----~~~~~ 490 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI----LERAQ 490 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH----HHHHH
Confidence 0 111122223333558999999999999999999999 44555555555588999888999999999999 88999
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 000307 1359 VEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1359 iq~Al~~e~~d~ai~L~~~ 1377 (1690)
+..++..++|+++.+++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 491 AETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 9999999999999888743
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-10 Score=135.47 Aligned_cols=382 Identities=15% Similarity=0.079 Sum_probs=266.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|+++.||.++..++|++|+..++|..++..+...+..+.+-++|..|++++|++|- ++.+-=..+ ++.+.-.-
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~G-rl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEG-RLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhc-ccchhHHH
Confidence 3578999999999999999999999999999999999999999999999999999998 555544444 55555555
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1203 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDk 1203 (1690)
|-+||+.= |.- -=+.--|.-++..+|+..-||+.+++-.. ..|+
T Consensus 207 YlkAi~~q--------p~f-------AiawsnLg~~f~~~Gei~~aiq~y~eAvk-----ldP~---------------- 250 (966)
T KOG4626|consen 207 YLKAIETQ--------PCF-------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----LDPN---------------- 250 (966)
T ss_pred HHHHHhhC--------Cce-------eeeehhcchHHhhcchHHHHHHHHHHhhc-----CCCc----------------
Confidence 55555422 211 11233456778889999999997755443 3342
Q ss_pred cchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccch---
Q 000307 1204 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA--- 1280 (1690)
Q Consensus 1204 c~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d--- 1280 (1690)
|.-.|- =+|++|--.+...+|... |.+.+..-|..|++.=.||.=||+ -|+-+++...+++.-
T Consensus 251 --------f~dAYi-NLGnV~ke~~~~d~Avs~---Y~rAl~lrpn~A~a~gNla~iYye--qG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 251 --------FLDAYI-NLGNVYKEARIFDRAVSC---YLRALNLRPNHAVAHGNLACIYYE--QGLLDLAIDTYKRALELQ 316 (966)
T ss_pred --------chHHHh-hHHHHHHHHhcchHHHHH---HHHHHhcCCcchhhccceEEEEec--cccHHHHHHHHHHHHhcC
Confidence 111121 258888888889999999 999999999999999999877888 466677766543322
Q ss_pred hHHHH--HHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHH
Q 000307 1281 HCFAV--NHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIW 1355 (1690)
Q Consensus 1281 ~~tKL--N~IRq~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW 1355 (1690)
..|+. |-|.-..- ..+.++++..+.+.|.++|.-++- -|.-.|..+.+ -++|...|+.+|+..|.=+. +.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa----a~ 391 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA----AH 391 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh----hh
Confidence 22222 21222222 348999999999999999999998 78788887777 78899999999999999999 99
Q ss_pred HHHHHHHHhcCChhHHHHHHHH-------HHHHHhhh------cccccccchhhcccCCCCCCCCCCCCCcccccccccc
Q 000307 1356 NQYVEYALQNGRHDFAAELMDR-------WFHSVWKV------QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQ 1422 (1690)
Q Consensus 1356 ~QLiq~Al~~e~~d~ai~L~~~-------ff~gia~~------Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q 1422 (1690)
+-|.-..-++|++++|+.--++ |-.+..-. +.+-.+|+..+-+.. ++ ++.+ .|-.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~----nPt~-AeAh------ 459 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QI----NPTF-AEAH------ 459 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hc----CcHH-HHHH------
Confidence 9999999999999999876665 33333222 224455554443221 12 2222 2322
Q ss_pred hhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhccc
Q 000307 1423 MDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSL 1502 (1690)
Q Consensus 1423 ~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDTAWIL 1502 (1690)
+=|+-+|-. .|+..||..+|+.||+.+|+=-=-.|=.=|+.=...+..| -++.|-..+.+|.+-|. -|.|
T Consensus 460 -----sNLasi~kD--sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D--~d~~~~kl~sivrdql~-~~rl 529 (966)
T KOG4626|consen 460 -----SNLASIYKD--SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD--YDKRMKKLVSIVRDQLE-KNRL 529 (966)
T ss_pred -----hhHHHHhhc--cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHh-hhcC
Confidence 556667777 8999999999999999999521144444444444455543 34444432233333331 2666
Q ss_pred ccccc
Q 000307 1503 PYLKL 1507 (1690)
Q Consensus 1503 f~~~~ 1507 (1690)
|.--|
T Consensus 530 psvhP 534 (966)
T KOG4626|consen 530 PSVHP 534 (966)
T ss_pred CccCc
Confidence 66555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.7e-08 Score=121.09 Aligned_cols=571 Identities=15% Similarity=0.157 Sum_probs=316.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHH-HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL-MY 1110 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~-mY 1110 (1690)
+.=+..|..+.-. |+++.|..+|.-.+..||.++++||.++.+|-++|.-+.+....-.|.-++|.++.+|- +|
T Consensus 140 ~~ll~eAN~lfar-----g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-----GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4444445444433 88999999999999999999999999999999999999999999999999999999773 33
Q ss_pred HhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc--c-
Q 000307 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR--H- 1187 (1690)
Q Consensus 1111 INsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE--~- 1187 (1690)
.-++ .+..+++|+-.|-+..... |++ -.+++-.++||..+|.+..|..+.-+|++ ..+..+ +
T Consensus 215 dls~-----~~~~i~qA~~cy~rAI~~~-p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~~p~~d~er~ 279 (895)
T KOG2076|consen 215 DLSE-----QLGNINQARYCYSRAIQAN-PSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQ--LDPPVDIERI 279 (895)
T ss_pred HHHH-----hcccHHHHHHHHHHHHhcC-Ccc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHh--hCCchhHHHH
Confidence 3222 2238888988888888887 777 79999999999999999999999999998 544111 0
Q ss_pred -cccHHHHHHHhccCCccchh------HH---------------HHH--HHhhccccHHHHhhcc---------------
Q 000307 1188 -SLFLSDILTCLTISDKLIFW------VC---------------CVY--LVIYRKLPDAVLQLLE--------------- 1228 (1690)
Q Consensus 1188 -~lSLsKi~~YLt~sDkc~Aw------Lc---------------~iY--dl~YrvLPGd~y~qne--------------- 1228 (1690)
++---.++.|.+.+++..|| +. ..| .-.|.+..-.+...-+
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 12222467788888887772 11 111 1111111111111111
Q ss_pred ----------c-hhhhhcCCC-C----Ccccch-------------hh--hhhHHHHHHHHHHHHHhhcCCcchhhhh--
Q 000307 1229 ----------C-EKELFAIDW-P----PVQLED-------------DE--KQRAIKLIEMAVNSVELYSNGESLEKET-- 1275 (1690)
Q Consensus 1229 ----------~-~KEAf~I~W-~----yvqvlk-------------dE--PdnalAL~smA~dYY~~~~ndEsla~~~-- 1275 (1690)
. ++..+.|+= + ..++-. .+ |....-|+-..++.|.. .+.-..+-..
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IGKYKEALRLLS 438 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 0 111222210 0 000001 11 22222222222344432 2211111111
Q ss_pred ---cccchhHHHH--HHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCC
Q 000307 1276 ---NLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGV 1348 (1690)
Q Consensus 1276 ---n~k~d~~tKL--N~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa 1348 (1690)
+....+..-| .+-||+..++.-+.|+.-+.++|.+.|.+.+. .|.+.|.+..+ +++|..+++.++.-+|+++
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccch
Confidence 3333444333 66789998889999999999999999999999 66666655555 9999988888886666666
Q ss_pred chhHHHHHH-------HHHHHHhcCChhHHHHHHHH---HHHHHhhh-cc---------------cccccchhhcccCCC
Q 000307 1349 PGIQCIWNQ-------YVEYALQNGRHDFAAELMDR---WFHSVWKV-QY---------------SQVEISDPLVADMSH 1402 (1690)
Q Consensus 1349 ~g~qcaW~Q-------Liq~Al~~e~~d~ai~L~~~---ff~gia~~-Q~---------------~~deALD~lr~g~s~ 1402 (1690)
+ .|+|.+ +....-+.|+.++=+.+... =|....++ +. ...+-+..+-.+...
T Consensus 518 e--~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 518 E--ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred h--hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 6 566644 44455566777766666555 11111111 10 001111111111001
Q ss_pred CCC-------CCCC--CCCcccccccccchhhh---hHHHHHHHHHhhhcChHHHHHHHHHHHhhccC--CcHHH-HHHH
Q 000307 1403 SSP-------ESTS--TSDPEFSVSNRNQMDVM---FGYLNLSLHRLLQNDWNEARLAIDAALKAAAS--EHFKH-CVRE 1467 (1690)
Q Consensus 1403 i~~-------es~s--~~vSDfy~~~~~Q~d~~---fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~--N~~i~-cLNN 1467 (1690)
.+. -.+. ...+++- .-.+|-. |--+=++|.+ .++++||....+.|+.+.-. -.-+- -|..
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~---~Lsiddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~ 670 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELR---GLSIDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQF 670 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhc---cCcHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHHH
Confidence 100 0011 0111111 1123333 3333448888 99999999999999988762 11133 4444
Q ss_pred HHHHHhcCCCCCCcccchhhhHHHH-H---HHHhh----hcccccccccchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000307 1468 HAMLLLINESEPKEGAPISWQLKLL-N---SYLDR----ARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1539 (1690)
Q Consensus 1468 YAYFLSle~~dL~KAEqMS~~~KtV-s---TYLDT----AWILf~~~~lARiYI~~i~k~rv~~liDqaL~~~S~dsS~v 1539 (1690)
-.++.++...+-..|.. + ++-+ . -|+|+ .|.| --..+++.+..-+..-+|-.++.+...++
T Consensus 671 ~~l~~s~~~~d~~~a~~--~-lR~~i~~~~~~~~~~q~~l~n~-----~~s~~~~~~q~v~~~R~~~~~~~~~~~~~--- 739 (895)
T KOG2076|consen 671 LGLKASLYARDPGDAFS--Y-LRSVITQFQFYLDVYQLNLWNL-----DFSYFSKYGQRVCYLRLIMRLLVKNKDDT--- 739 (895)
T ss_pred HHHHHHHhcCCHHHHHH--H-HHHHHHHHhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCccCC---
Confidence 45555565555555543 2 3322 2 24554 5775 11333334444444444444554433221
Q ss_pred HHHHhhccCC-CCcccccccccchhHHHHHHHhhcCcch----hhHHHHHH------HhhccCCCCCCCCCchhHHHHHh
Q 000307 1540 NLVLEVCYGP-SLLPRNFSKLKDLVDFVEGIMEIVPSNY----QLAFSVFK------LLNKDHNPNITDAVPESVLFWAS 1608 (1690)
Q Consensus 1540 NkALE~W~g~-slLpqKI~~kKyI~dfVE~ime~~P~Ny----~LALav~k------ll~k~~~~~~~d~~s~~~~fwA~ 1608 (1690)
.+|-+-+|- .++...+ |+-...-=++-..+|.+. -||+++.- ...+|+. -+++.
T Consensus 740 -~~l~~i~gh~~~~~~s~---~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~-----------i~qG~ 804 (895)
T KOG2076|consen 740 -PPLALIYGHNLFVNASF---KHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQ-----------IAQGF 804 (895)
T ss_pred -cceeeeechhHhhccch---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHH
Confidence 122222111 0111111 111122223445677744 34444332 2333333 45666
Q ss_pred hhh--hhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHH
Q 000307 1609 SSL--VSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIK 1660 (1690)
Q Consensus 1609 s~l--~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~ 1660 (1690)
++| +.-+..+- -.-|.... -|-..++ .|+..++..||.+||.++|.+..
T Consensus 805 afL~RY~~lR~~~-~~QEa~YN-igRayh~-~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 805 AFLKRYKELRRCE-EKQEAFYN-IGRAYHQ-IGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHHHhhccH-HHHHHHHH-HHHHHHH-cccHHHHHHHHHHHhCCCccccc
Confidence 677 67765111 11233333 3334444 58899999999999999998753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=123.42 Aligned_cols=279 Identities=11% Similarity=0.036 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccchH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIF-YSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY-~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl~ 1122 (1690)
.|++++|..++.++-+.. +.+.++|.++..+ .++++.+.++++|++|++.+|++.. .+.+|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-------- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-------- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC--------
Confidence 589999996666655542 2477777776666 9999999999999999999999864 378999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCC
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1202 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sD 1202 (1690)
.|+.|+..|++..+.. |+. .+++..++++|.++|+++.|+.++.+|.. ..-.++. .......
T Consensus 168 ~~~~Al~~l~~~~~~~-P~~-------~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~~-----~~~~l~~--- 229 (398)
T PRK10747 168 ENHAARHGVDKLLEVA-PRH-------PEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDEE-----HRAMLEQ--- 229 (398)
T ss_pred CHHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCHH-----HHHHHHH---
Confidence 9999999999999988 888 89999999999999999999999999996 2211221 1110000
Q ss_pred ccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh---cccc
Q 000307 1203 KLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET---NLRS 1279 (1690)
Q Consensus 1203 kc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~---n~k~ 1279 (1690)
..|..|....... ...+++.=- ...+.+..|+++-+++..| ..+.. .|+...+... ..+.
T Consensus 230 -----------~a~~~l~~~~~~~--~~~~~l~~~--w~~lp~~~~~~~~~~~~~A-~~l~~-~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 230 -----------QAWIGLMDQAMAD--QGSEGLKRW--WKNQSRKTRHQVALQVAMA-EHLIE-CDDHDTAQQIILDGLKR 292 (398)
T ss_pred -----------HHHHHHHHHHHHh--cCHHHHHHH--HHhCCHHHhCCHHHHHHHH-HHHHH-CCCHHHHHHHHHHHHhc
Confidence 0111111211111 122333321 2334455677777777776 44443 5555544443 1111
Q ss_pred hhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHH
Q 000307 1280 AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1358 (1690)
Q Consensus 1280 d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QL 1358 (1690)
..+..+-.+.-.+..++.+.++..+++.++.+|.++++ ..++......+.-+.|...|+.+++..|++.. |++ |
T Consensus 293 ~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~---~~~--L 367 (398)
T PRK10747 293 QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD---YAW--L 367 (398)
T ss_pred CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH---HHH--H
Confidence 11222222222223468889999999999999999998 44444444444477899999999999998765 444 6
Q ss_pred HHHHHhcCChhHHHHHHH
Q 000307 1359 VEYALQNGRHDFAAELMD 1376 (1690)
Q Consensus 1359 iq~Al~~e~~d~ai~L~~ 1376 (1690)
.....+.|+.+++.++-+
T Consensus 368 a~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 667777888888866554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=126.92 Aligned_cols=377 Identities=11% Similarity=-0.008 Sum_probs=255.8
Q ss_pred hhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHh--cCCCCHH---HHHHHHhcCCCcccch
Q 000307 1049 LEGMKKALSLLSRALEADP--TSEILWITYLLIFYSNTNSVGKDDMFSYSVK--HNEGSYA---LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINP--tSAeaWyeyl~lY~~~~~~~ea~emfekAVe--laP~NY~---Lw~mYINsr~s~ddrl 1121 (1690)
.|+++.|+.+|....+..| -++..|-.++..+...+....+.+.+..+++ +.|+-+. |..+|...+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g------- 172 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG------- 172 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-------
Confidence 3778999999999887543 3678899999999999998888888888876 4555444 788999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHH-HHHHHhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTI 1200 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLs-Ki~~YLt~ 1200 (1690)
.+++|..+|.+|.. ++ .-.+..|+..|+..|++++|+..+.++.. .|..+...+.. -+..|...
T Consensus 173 -~~~~A~~lf~~m~~---~~--------~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 173 -MLIDARRLFDEMPE---RN--------LASWGTIIGGLVDAGNYREAFALFREMWE---DGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred -CHHHHHHHHhcCCC---CC--------eeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCChhhHHHHHHHHhcC
Confidence 99999999999854 33 34678899999999999999999999984 34444233333 33466666
Q ss_pred CCccchhHHHHH--------HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchh
Q 000307 1201 SDKLIFWVCCVY--------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1272 (1690)
Q Consensus 1201 sDkc~AwLc~iY--------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla 1272 (1690)
++-..+.-...+ ++.....+-+.|...|+..+|..+ +....+ .++...-.| +..|.. .|+-+.+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~---~~~vt~n~l-i~~y~~-~g~~~eA 309 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV---FDGMPE---KTTVAWNSM-LAGYAL-HGYSEEA 309 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH---HHhCCC---CChhHHHHH-HHHHHh-CCCHHHH
Confidence 655544222211 222223456788888999999887 655532 355566666 455554 4444333
Q ss_pred hhh-------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCcchh--HHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1273 KET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1273 ~~~-------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~-P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
... +.+.+..|=..+|+.+..+.+.+.+..++..+++.. +.|+.+ .|+..|.+... .++|..+|+++.+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCC
Confidence 333 233445554566666666768999999999999986 556666 88888888666 7899999998754
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-----------HHHHHh--hhc-ccccccchhhcccCC--CCCCC
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----------WFHSVW--KVQ-YSQVEISDPLVADMS--HSSPE 1406 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-----------ff~gia--~~Q-~~~deALD~lr~g~s--~i~~e 1406 (1690)
.|.. .|+-+|......|+.++|+++.++ -|.++- +.. ...++|..+|+.-.. .+.+
T Consensus 389 ---~d~~----t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p- 460 (697)
T PLN03081 389 ---KNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP- 460 (697)
T ss_pred ---CCee----eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-
Confidence 3566 799999999999999999999998 222221 111 156677777763321 1111
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchh
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPIS 1486 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS 1486 (1690)
....| ..|-+.|.+ .|+.+||+..|+++ ...|+- .+|+--+--.. ...+++.|+.+.
T Consensus 461 -----~~~~y-----------~~li~~l~r--~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll~a~~-~~g~~~~a~~~~ 517 (697)
T PLN03081 461 -----RAMHY-----------ACMIELLGR--EGLLDEAYAMIRRA-PFKPTV---NMWAALLTACR-IHKNLELGRLAA 517 (697)
T ss_pred -----Cccch-----------HhHHHHHHh--cCCHHHHHHHHHHC-CCCCCH---HHHHHHHHHHH-HcCCcHHHHHHH
Confidence 12335 888899999 99999999988875 233433 34443333222 234566665544
Q ss_pred h
Q 000307 1487 W 1487 (1690)
Q Consensus 1487 ~ 1487 (1690)
.
T Consensus 518 ~ 518 (697)
T PLN03081 518 E 518 (697)
T ss_pred H
Confidence 4
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-09 Score=124.03 Aligned_cols=273 Identities=10% Similarity=-0.053 Sum_probs=195.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccchH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl~ 1122 (1690)
..|++..|...+.++.+..|+....+...+.++.+++..+.+++++++|.+..|++.- .+.+++..+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-------- 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-------- 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC--------
Confidence 4689999999999999999998888888899999999999999999999999998842 488999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHH---hc
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC---LT 1199 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~Y---Lt 1199 (1690)
.|+.|+..++.+.+.. |+. .+++..+.++|.++|+++.|+..+.++..... .++....-.....+ +.
T Consensus 168 ~~~~Al~~l~~l~~~~-P~~-------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA-PRH-------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 888 79999999999999999999999999886221 12211111111222 21
Q ss_pred cCCc--cch-----h--HHHHH--HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCC
Q 000307 1200 ISDK--LIF-----W--VCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNG 1268 (1690)
Q Consensus 1200 ~sDk--c~A-----w--Lc~iY--dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~nd 1268 (1690)
.++. ... | +...+ ........+..+...|...+|+.+ ..+.++..|++....+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~---l~~~l~~~pd~~~~~~~------------ 302 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI---IFDGLKKLGDDRAISLP------------ 302 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH---HHHHHhhCCCcccchhH------------
Confidence 1111 000 1 11111 344555555566666666666555 55555555555322111
Q ss_pred cchhhhhcccchhHHHHHHHHHHHH--hcchHHHHHHHHHHHHhCCCcc--hh--HHHHHHHhhccCCCccHHHHH--HH
Q 000307 1269 ESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCL--EL--VLMKARLQKHDFGDLSSVGFE--EA 1340 (1690)
Q Consensus 1269 Esla~~~n~k~d~~tKLN~IRq~I~--lEdse~al~LfdklLe~~P~d~--eL--~L~AayL~~k~m~e~Ai~vfe--~a 1340 (1690)
.++.++. .++.+.++.++++.++.+|.++ .+ .|--.+++.++ .++|...|+ .+
T Consensus 303 ------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a 363 (409)
T TIGR00540 303 ------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAA 363 (409)
T ss_pred ------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHH
Confidence 2333333 2356777889999999999999 77 34444455555 778999999 68
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1341 LIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1341 L~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
++..|+... +. -|...+++.|+.++|.++-++
T Consensus 364 ~~~~p~~~~----~~-~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 364 CKEQLDAND----LA-MAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred hhcCCCHHH----HH-HHHHHHHHcCCHHHHHHHHHH
Confidence 889998876 33 678889999999999877765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=129.77 Aligned_cols=193 Identities=12% Similarity=0.027 Sum_probs=152.0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---------CchHHHHHHHHHhcCCCCHH----HHHHHHhcC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---------SVGKDDMFSYSVKHNEGSYA----LWLMYINSR 1114 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~---------~~ea~emfekAVelaP~NY~----Lw~mYINsr 1114 (1690)
..+.++.|+.+|.+|+++||+.+.+|..++.+|..... ..+|.+.+++|++++|++-. ++.+|...+
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 46788999999999999999999999999987764332 46889999999999999987 667788888
Q ss_pred CCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHH
Q 000307 1115 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI 1194 (1690)
Q Consensus 1115 ~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi 1194 (1690)
.|++|+.+|++..+.+ |+. .++++.+..+|.+.|++++|+..+.+... ++.... ...+...
T Consensus 353 --------~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~-~~~~~~~ 413 (553)
T PRK12370 353 --------EYIVGSLLFKQANLLS-PIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRA-AAGITKL 413 (553)
T ss_pred --------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCh-hhHHHHH
Confidence 8999999999988888 888 78899999999999999999999999886 444443 3333444
Q ss_pred HHHhccCCccch--hHHH---H---HHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHH
Q 000307 1195 LTCLTISDKLIF--WVCC---V---YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1195 ~~YLt~sDkc~A--wLc~---i---Ydl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~ 1263 (1690)
..++..++-..| ++-. . ....+..++|.+|...|..+||... +.++...+|+...+...++ .+|.
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~---~~~~~~~~~~~~~~~~~l~-~~~~ 486 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL---TKEISTQEITGLIAVNLLY-AEYC 486 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH---HHHhhhccchhHHHHHHHH-HHHh
Confidence 456666665444 2211 1 1344567788888889999999888 7888888888888888885 5554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-08 Score=126.26 Aligned_cols=393 Identities=13% Similarity=0.101 Sum_probs=251.2
Q ss_pred hhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC--CCCHH---HHHHHHhcCCCcccch
Q 000307 1049 LEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEI--NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVela--P~NY~---Lw~mYINsr~s~ddrl 1121 (1690)
.|+++.|+.+|...++. .| +...|..++..+...+....+.+++..+++.- |+-+. |-.+|...+
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g------- 337 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG------- 337 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-------
Confidence 47789999999998775 45 45667777788888888888999998888753 33333 888999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHH-HHhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDIL-TCLTI 1200 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~-~YLt~ 1200 (1690)
.+++|..+|++|.. +| ...+..|+..|++.|++++|+..+.+++. .|..+...++..+. .|-..
T Consensus 338 -~~~~A~~vf~~m~~---~d--------~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 338 -SWGEAEKVFSRMET---KD--------AVSWTAMISGYEKNGLPDKALETYALMEQ---DNVSPDEITIASVLSACACL 402 (857)
T ss_pred -CHHHHHHHHhhCCC---CC--------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCCCceeHHHHHHHHhcc
Confidence 89999999998854 33 34688899999999999999999999874 45444444554444 66666
Q ss_pred CCccchhHHHHHHHhhcc--------ccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchh
Q 000307 1201 SDKLIFWVCCVYLVIYRK--------LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1272 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~Yrv--------LPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla 1272 (1690)
++-..+.-...+...... .+-+.|...|+.++|+.+ +.+..+ |+ +...-.| +..|.. .+.-..+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~--~d-~vs~~~m-i~~~~~-~g~~~eA 474 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV---FHNIPE--KD-VISWTSI-IAGLRL-NNRCFEA 474 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH---HHhCCC--CC-eeeHHHH-HHHHHH-CCCHHHH
Confidence 666666333333222222 234567778888888887 655543 22 2233333 232322 2211111
Q ss_pred hhh------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-cchh--HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1273 KET------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS-CLEL--VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1273 ~~~------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~-d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
... ..+.+..|=..+|..+....+.+.+..++..+++.... +.-+ .|+..|.+... .++|..+|+..
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~-~~~A~~~f~~~--- 550 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR-MNYAWNQFNSH--- 550 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC-HHHHHHHHHhc---
Confidence 111 11222222233333333344677777777777765432 2222 77777777666 66777887775
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHH-hhhc-ccccccchhhcccC--CCCCCCC
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSV-WKVQ-YSQVEISDPLVADM--SHSSPES 1407 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gi-a~~Q-~~~deALD~lr~g~--s~i~~es 1407 (1690)
+.+.. .|+-+|......|+.++|+++.++ |-.-+ ++.. ...++|+..|..-. ..+.+
T Consensus 551 -~~d~~----s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-- 623 (857)
T PLN03077 551 -EKDVV----SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-- 623 (857)
T ss_pred -CCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC--
Confidence 56677 899999999999999999999987 21111 1111 25667777776332 11111
Q ss_pred CCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000307 1408 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1487 (1690)
Q Consensus 1408 ~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~ 1487 (1690)
..+.| ..|.++|.+ .|+.+||...+++. ...|+-.+..+|.+ |+. -..+++.|+.+..
T Consensus 624 ----~~~~y-----------~~lv~~l~r--~G~~~eA~~~~~~m-~~~pd~~~~~aLl~-ac~---~~~~~e~~e~~a~ 681 (857)
T PLN03077 624 ----NLKHY-----------ACVVDLLGR--AGKLTEAYNFINKM-PITPDPAVWGALLN-ACR---IHRHVELGELAAQ 681 (857)
T ss_pred ----chHHH-----------HHHHHHHHh--CCCHHHHHHHHHHC-CCCCCHHHHHHHHH-HHH---HcCChHHHHHHHH
Confidence 12345 999999999 99999999999985 46676545555555 332 2456777776655
Q ss_pred hHHHH------HHHHhh-hcccccccc
Q 000307 1488 QLKLL------NSYLDR-ARSLPYLKL 1507 (1690)
Q Consensus 1488 ~~KtV------sTYLDT-AWILf~~~~ 1507 (1690)
+++ .+|... +|++...++
T Consensus 682 --~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 682 --HIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred --HHHhhCCCCcchHHHHHHHHHHCCC
Confidence 444 344444 777777777
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=127.78 Aligned_cols=323 Identities=13% Similarity=0.090 Sum_probs=224.5
Q ss_pred hhhhchhhhHHHHHHHHHHhcccc----------------------C-------chhhHHHHHHHHHHHHHhCCCCHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDA----------------------N-------KLEGMKKALSLLSRALEADPTSEILW 1073 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~----------------------n-------~~g~yDAALdLLsrALEINPtSAeaW 1073 (1690)
-||-+|.-+++||-+|--+.-+.. + +.|++..|..-|.+|+|++|.=+++|
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 455566777999999854443321 1 35556678888999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhh
Q 000307 1074 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1148 (1690)
Q Consensus 1074 yeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ 1148 (1690)
..++-.|...|+-.++...|++||+++| ||- |+.+|-..+ .|++|+.+|++...-. |.-
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~--------~~d~Avs~Y~rAl~lr-pn~------ 285 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEAR--------IFDRAVSCYLRALNLR-PNH------ 285 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHh--------cchHHHHHHHHHHhcC-Ccc------
Confidence 9999999999999999999999999997 554 888888888 8888888887655443 443
Q ss_pred hHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCcc---ch--------hHHHHH-HHhh
Q 000307 1149 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL---IF--------WVCCVY-LVIY 1216 (1690)
Q Consensus 1149 ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc---~A--------wLc~iY-dl~Y 1216 (1690)
-.+.--|+-.|--+|..+-||.++.|-.. ..|+ .--+.=-+--..+|+. -| .||-.| +.-|
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-----~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-----LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-----cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 34455566678889999999999988775 3442 2111111112222222 22 444445 4444
Q ss_pred ccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-----cccchhHHHH--HHHH
Q 000307 1217 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-----NLRSAHCFAV--NHIW 1289 (1690)
Q Consensus 1217 rvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-----n~k~d~~tKL--N~IR 1289 (1690)
. +|++|+.-++-.+|..+ |...+...|+-+.|.-.+| ..|.+ -| .+.+.. -.++..-|+- +-|-
T Consensus 359 N--Lgni~~E~~~~e~A~~l---y~~al~v~p~~aaa~nNLa-~i~kq-qg--nl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 359 N--LGNIYREQGKIEEATRL---YLKALEVFPEFAAAHNNLA-SIYKQ-QG--NLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred H--HHHHHHHhccchHHHHH---HHHHHhhChhhhhhhhhHH-HHHHh-cc--cHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 3 68888888899999888 8888999999999998886 77765 22 222222 2222222222 1122
Q ss_pred HHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 000307 1290 CMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNG 1366 (1690)
Q Consensus 1290 q~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e 1366 (1690)
-..- ..|.+.|++...+++..+|+=+|- -|.+.|=...+ -.+|+..|+++|.+.||=.. .-|=..-.+++.-.+.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLklkPDfpd-A~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN-IPEAIQSYRTALKLKPDFPD-AYCNLLHCLQIVCDWT 507 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHccCCCCch-hhhHHHHHHHHHhccc
Confidence 2222 449999999999999999999999 88888877777 66899999999999999766 3444444455555555
Q ss_pred Chh----HHHHHHHHHH
Q 000307 1367 RHD----FAAELMDRWF 1379 (1690)
Q Consensus 1367 ~~d----~ai~L~~~ff 1379 (1690)
++| ++..|-++|.
T Consensus 508 D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 508 DYDKRMKKLVSIVRDQL 524 (966)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 544 4455555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-08 Score=122.51 Aligned_cols=343 Identities=15% Similarity=0.074 Sum_probs=244.8
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD-----PTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1097 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEIN-----PtSAeaWyeyl~lY~~~~~~~ea~emfekAV 1097 (1690)
-++..+.|.++||.+|..+..++. -++|++|..|+++- +=-+|++-.++-+++.++.-+.|.+.|..|.
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~------~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDP------WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 456678888999999988887654 33455555555432 2357888888888899999999999999887
Q ss_pred hc-----CCCC---------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhh
Q 000307 1098 KH-----NEGS---------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1163 (1690)
Q Consensus 1098 el-----aP~N---------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qS 1163 (1690)
.. +++. |.|+.++-... .|+.|-++|-...+.+ |.= .|..+-|.-+-...
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~--------~~~~A~e~Yk~Ilkeh-p~Y-------Id~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELH--------DTEVAEEMYKSILKEH-PGY-------IDAYLRLGCMARDK 543 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHC-chh-------HHHHHHhhHHHHhc
Confidence 66 3343 45676666666 8888889998888887 776 77777776444444
Q ss_pred cCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh---hc-CCCC
Q 000307 1164 GNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL---FA-IDWP 1239 (1690)
Q Consensus 1164 GnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA---f~-I~W~ 1239 (1690)
++.-.|+.-++.+.. .+..++ +=+.|.|+|++-+...+-+ |. |
T Consensus 544 ~~~~ea~~~lk~~l~--~d~~np----------------------------~arsl~G~~~l~k~~~~~a~k~f~~i--- 590 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALN--IDSSNP----------------------------NARSLLGNLHLKKSEWKPAKKKFETI--- 590 (1018)
T ss_pred cCcHHHHHHHHHHHh--cccCCc----------------------------HHHHHHHHHHHhhhhhcccccHHHHH---
Confidence 778888887777776 555555 3456789999988744333 33 4
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-H
Q 000307 1240 PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-V 1318 (1690)
Q Consensus 1240 yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~ 1318 (1690)
..+...- +++|++++|| ++|-+...+++-. + ...-| --+.|+++|+++|..+|.+.-- -
T Consensus 591 ~~~~~~~--~D~YsliaLG-N~~~~~l~~~~rn----~--ek~kk-----------~~~KAlq~y~kvL~~dpkN~yAAN 650 (1018)
T KOG2002|consen 591 LKKTSTK--TDAYSLIALG-NVYIQALHNPSRN----P--EKEKK-----------HQEKALQLYGKVLRNDPKNMYAAN 650 (1018)
T ss_pred HhhhccC--CchhHHHHhh-HHHHHHhcccccC----h--HHHHH-----------HHHHHHHHHHHHHhcCcchhhhcc
Confidence 4444333 7899999998 7776523322100 0 01111 2468999999999999999766 3
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcc
Q 000307 1319 LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVA 1398 (1690)
Q Consensus 1319 L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~ 1398 (1690)
=.+.-|..++--.+|+.+|-+|-+-+-+... .|.-++-.++..+.|-.|++.-+..+..+ .
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d----v~lNlah~~~e~~qy~~AIqmYe~~lkkf--------------~- 711 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFED----VWLNLAHCYVEQGQYRLAIQMYENCLKKF--------------Y- 711 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCc----eeeeHHHHHHHHHHHHHHHHHHHHHHHHh--------------c-
Confidence 3444455666688999999999999999999 99999999999999999998875522111 1
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCC
Q 000307 1399 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESE 1478 (1690)
Q Consensus 1399 g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~d 1478 (1690)
..-.+++. .+|+-++|+ -|.+.||-.+--+|+-.+|.| ..++=|+|.-+--..+.
T Consensus 712 ----------~~~~~~vl-----------~~Lara~y~--~~~~~eak~~ll~a~~~~p~~--~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 712 ----------KKNRSEVL-----------HYLARAWYE--AGKLQEAKEALLKARHLAPSN--TSVKFNLALVLKKLAES 766 (1018)
T ss_pred ----------ccCCHHHH-----------HHHHHHHHH--hhhHHHHHHHHHHHHHhCCcc--chHHhHHHHHHHHHHHH
Confidence 00013444 999999999 999999999999999999999 66888888766544443
Q ss_pred CCcccc
Q 000307 1479 PKEGAP 1484 (1690)
Q Consensus 1479 L~KAEq 1484 (1690)
.-+.++
T Consensus 767 ~lr~~k 772 (1018)
T KOG2002|consen 767 ILRLEK 772 (1018)
T ss_pred HHhccc
Confidence 333444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=118.18 Aligned_cols=156 Identities=25% Similarity=0.302 Sum_probs=131.6
Q ss_pred hhhhchhhhHHHHHHHHHHhcc-------ccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQ-------DANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 1095 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq-------~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfek 1095 (1690)
.+...|.|+++||+++-.--.- +.....-.+..+++|.+||+.||.+..+|..|+.++.+.-..+.....+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7888999999999999332222 223345578889999999999999999999999999999988888999999
Q ss_pred HHhcCCCCHHHHHHHHhcCCC------cccchHHHHHHHHHHHHhhhcC---CCCcchhhhhhHHHHHHHHHHHhhhcCH
Q 000307 1096 SVKHNEGSYALWLMYINSRTP------LNHRLDAYDAALSVLCRCASAS---DGDEMHASACILDLFLQMLQCFCMSGNT 1166 (1690)
Q Consensus 1096 AVelaP~NY~Lw~mYINsr~s------~ddrl~aYdrAI~aLe~las~~---~pDr~~~Sa~ILDvLL~LvqLY~qSGny 1166 (1690)
+++.+|+++.||..||+...+ +.+-...|.++|..+....... .++.....-.++++|+.+..+..++|-.
T Consensus 91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 999999999999999997643 7788999999999996654432 2344455679999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 000307 1167 EKAIQRISRLLI 1178 (1690)
Q Consensus 1167 dKAI~tL~rLEq 1178 (1690)
+.|++.+..+..
T Consensus 171 E~Ava~~Qa~lE 182 (321)
T PF08424_consen 171 ERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-07 Score=108.87 Aligned_cols=322 Identities=19% Similarity=0.259 Sum_probs=238.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
+.+.++=|..+|.|+|...|..-.+|.-.+.+--.-++.+.-...|++||++.|..-.||+||-..+ |-- -.-..|
T Consensus 528 k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~--w~a--gdv~~a 603 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK--WKA--GDVPAA 603 (913)
T ss_pred hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH--Hhc--CCcHHH
Confidence 4566788999999999999999999999999988888888899999999999999999999998876 111 123455
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccc-cCCCCcccccHHHHHHHhccCCccch
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA-TGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~A-l~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
...|.+....+ |.. +|+-|.-+.|...+..++.|-. |++.| ..+..|+ .
T Consensus 604 r~il~~af~~~-pns-------eeiwlaavKle~en~e~eraR~----llakar~~sgTeR------------------v 653 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNS-------EEIWLAAVKLEFENDELERARD----LLAKARSISGTER------------------V 653 (913)
T ss_pred HHHHHHHHHhC-CCc-------HHHHHHHHHHhhccccHHHHHH----HHHHHhccCCcch------------------h
Confidence 55665566666 666 7888888888888888887765 44311 2233332 1
Q ss_pred hHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHH
Q 000307 1207 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1286 (1690)
Q Consensus 1207 wLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN 1286 (1690)
|.-.+++-.|. ++-+-|..|++-|+..|- .+.|+=
T Consensus 654 ~mKs~~~er~l----------------------------d~~eeA~rllEe~lk~fp-----------------~f~Kl~ 688 (913)
T KOG0495|consen 654 WMKSANLERYL----------------------------DNVEEALRLLEEALKSFP-----------------DFHKLW 688 (913)
T ss_pred hHHHhHHHHHh----------------------------hhHHHHHHHHHHHHHhCC-----------------chHHHH
Confidence 22222222221 233445555666654443 577886
Q ss_pred HHHHHHH--hcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhcc-CCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1287 HIWCMAV--LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1287 ~IRq~I~--lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~-m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
||...|. .++.+.+..-+..=++.||.|+-|.|.-+.|.-+. ....|..+|+.+.-.+|+|+- +|.-.|+.-+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~----lwle~Ir~El 764 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL----LWLESIRMEL 764 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch----hHHHHHHHHH
Confidence 6766665 66889999999999999999999966667766665 566888999999999999999 9999999999
Q ss_pred hcCChhHHHHHHHH-----------HHHHHhhhcc--cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHH
Q 000307 1364 QNGRHDFAAELMDR-----------WFHSVWKVQY--SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1430 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~-----------ff~gia~~Q~--~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~L 1430 (1690)
+.|+.+.|..++.+ |-..|+..-. .--..+|++++- +-|+ -++ --+
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dp----hVl-----------lai 823 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDP----HVL-----------LAI 823 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc------cCCc----hhH-----------HHH
Confidence 99999999999887 7777776655 444556666622 1111 122 446
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000307 1431 NLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1477 (1690)
Q Consensus 1431 GD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~ 1477 (1690)
+-++|. +...+.|.+-|++|++..|++ =.+|-.+--|-...|+
T Consensus 824 a~lfw~--e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 824 AKLFWS--EKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCC
Confidence 678888 999999999999999999998 6777666666556563
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.85 E-value=7e-08 Score=98.11 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
...+.++.+|..++.+ |+++.|+..|.++++.+|+++.+|+.++.+|...+...++.+++++|+++.|.+..
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3457788888877765 78999999999999999999999999999999999999999999999999998765
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++.+|...+ .|++|+..|.+..... .+.. .+.+..+..+|...|++++|+..+.+...
T Consensus 104 ~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 104 NYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQP-------ARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHcc--------cHHHHHHHHHHHHhccccccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 778888888 9999999998876542 1222 56677889999999999999998888775
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=120.40 Aligned_cols=135 Identities=12% Similarity=-0.010 Sum_probs=114.1
Q ss_pred hhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
++-.|.+.++|..+|..++.+ |+++.|...|.+||++||+++.+|+.++.+|...+..++|...|++|++++|.+
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIH-----SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 455667778999888877665 778999999999999999999999999999999999999999999999999987
Q ss_pred HH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1104 YA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1104 Y~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.. +++++...+ .|++|+..+.+.....+|+. ...+..+..+|...|++++|++.+.++.+
T Consensus 406 ~~~~~~~~~~~~~~g--------~~eeA~~~~~~~l~~~~p~~-------~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 406 AAAGITKLWITYYHT--------GIDDAIRLGDELRSQHLQDN-------PILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred hhhHHHHHHHHHhcc--------CHHHHHHHHHHHHHhccccC-------HHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 43 344455566 68999999988776654565 56778889999999999999999999886
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=110.20 Aligned_cols=253 Identities=16% Similarity=0.143 Sum_probs=108.0
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+.++.++.+.|++++|+++|.+.-.. ....+ +..|-.+.+.+....+...+|
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~---------------------------~~~~~~~~a~La~~~~~~~~A 63 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQK-IAPPD---------------------------DPEYWRLLADLAWSLGDYDEA 63 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-ccccc---------------------------ccccccccccccccccccccc
Confidence 46799999999999999988543320 10111 125666777777777888888
Q ss_pred hcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh----cccch-hHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 000307 1234 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET----NLRSA-HCFAVNHIWCMAVLNGLECSMNLLEKYI 1308 (1690)
Q Consensus 1234 f~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~----n~k~d-~~tKLN~IRq~I~lEdse~al~LfdklL 1308 (1690)
... |.+++..+|.++..+..+ +.++. .++...+... -++.. ...-...+..+....+.+.+..+++++.
T Consensus 64 ~~a---y~~l~~~~~~~~~~~~~l-~~l~~--~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 64 IEA---YEKLLASDKANPQDYERL-IQLLQ--DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred ccc---cccccccccccccccccc-ccccc--cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888 888888877776666555 34432 3333333322 11111 1111133334444669999999999988
Q ss_pred HhC--CCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhh
Q 000307 1309 KLY--PSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKV 1385 (1690)
Q Consensus 1309 e~~--P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~ 1385 (1690)
+.. |.+..+ ..+|......+.++.|+..|+++|+..|++.. +++.|+-..++.++.+++.++++.|-...
T Consensus 138 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~--- 210 (280)
T PF13429_consen 138 ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDMGDYDEAREALKRLLKAA--- 210 (280)
T ss_dssp H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTTCHHHHHHHHHHHHHHH----
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHHHC---
Confidence 766 677777 66666666666688999999999999999999 99999999999999999999887643221
Q ss_pred cccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHH
Q 000307 1386 QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCV 1465 (1690)
Q Consensus 1386 Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cL 1465 (1690)
+. .++++ ..+|.+|.. .|+.++|...|+++++.+|++ ...+
T Consensus 211 ----------------~~--------~~~~~-----------~~la~~~~~--lg~~~~Al~~~~~~~~~~p~d--~~~~ 251 (280)
T PF13429_consen 211 ----------------PD--------DPDLW-----------DALAAAYLQ--LGRYEEALEYLEKALKLNPDD--PLWL 251 (280)
T ss_dssp ----------------HT--------SCCHC-----------HHHHHHHHH--HT-HHHHHHHHHHHHHHSTT---HHHH
T ss_pred ----------------cC--------HHHHH-----------HHHHHHhcc--ccccccccccccccccccccc--cccc
Confidence 11 13555 677889999 899999999999999999999 8999
Q ss_pred HHHHHHHhcCCCCCCcccchhh
Q 000307 1466 REHAMLLLINESEPKEGAPISW 1487 (1690)
Q Consensus 1466 NNYAYFLSle~~dL~KAEqMS~ 1487 (1690)
..||..|...|. .++|.++-.
T Consensus 252 ~~~a~~l~~~g~-~~~A~~~~~ 272 (280)
T PF13429_consen 252 LAYADALEQAGR-KDEALRLRR 272 (280)
T ss_dssp HHHHHHHT--------------
T ss_pred cccccccccccc-ccccccccc
Confidence 999999988774 666666444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-06 Score=114.60 Aligned_cols=274 Identities=14% Similarity=0.074 Sum_probs=149.0
Q ss_pred hhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC--CCCHH---HHHHHHhcCCCcccchH
Q 000307 1049 LEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPt-SAeaWyeyl~lY~~~~~~~ea~emfekAVela--P~NY~---Lw~mYINsr~s~ddrl~ 1122 (1690)
.|+++.|+.+|.+..+.... +..+|-.++..|.+.+...+|.+.|+...+.. |+.+. |...|.+.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-------- 521 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-------- 521 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------
Confidence 35566777777777666544 45666677777777777777777777666542 22222 555666666
Q ss_pred HHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccH-HHHHHHhcc
Q 000307 1123 AYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL-SDILTCLTI 1200 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSL-sKi~~YLt~ 1200 (1690)
.+++|+.+|++|.+.. .|| .-++..|+..|++.|++++|++.+.++... ..|..+...+. .-|..|...
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD--------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPD--------RVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANA 592 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHC
Confidence 6677777776665432 233 346666777777777777777766666520 12223211111 112233333
Q ss_pred CCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhh-hhhHHHHHHHHHHHHHhhcCCcchhhhh----
Q 000307 1201 SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE-KQRAIKLIEMAVNSVELYSNGESLEKET---- 1275 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdE-PdnalAL~smA~dYY~~~~ndEsla~~~---- 1275 (1690)
|..++|+.+ +....+.. +.+....-.+ ++.|.. .|+-+.+...
T Consensus 593 ---------------------------G~ldeA~el---f~~M~e~gi~p~~~tynsL-I~ay~k-~G~~deAl~lf~eM 640 (1060)
T PLN03218 593 ---------------------------GQVDRAKEV---YQMIHEYNIKGTPEVYTIA-VNSCSQ-KGDWDFALSIYDDM 640 (1060)
T ss_pred ---------------------------CCHHHHHHH---HHHHHHcCCCCChHHHHHH-HHHHHh-cCCHHHHHHHHHHH
Confidence 334444433 33332221 1111111122 222222 2222211111
Q ss_pred ---cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCcchh--HHHHHHHhhccCCCccHHHHHHHHHh--CCCC
Q 000307 1276 ---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQKHDFGDLSSVGFEEALIK--WPKG 1347 (1690)
Q Consensus 1276 ---n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~-P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~--~PkN 1347 (1690)
.-..+..+=-.+|..+....+.+.|..+|+.+.+.. +.+... .|..+|....+ .++|..+|+++.+. .|+
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd- 718 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT- 718 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-
Confidence 011111121233343444557888888888888764 223333 77777777666 67888888887653 443
Q ss_pred CchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1348 VPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1348 a~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
.. .|+.+|....+.+++++|+++.++
T Consensus 719 vv----tyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 719 VS----TMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33 688888888888888888888876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-06 Score=111.14 Aligned_cols=365 Identities=11% Similarity=0.086 Sum_probs=191.2
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---HHHHHHhcCCCcccchHHH
Q 000307 1050 EGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPt--SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---Lw~mYINsr~s~ddrl~aY 1124 (1690)
|+++.|+.+|..-.+-+.- +...+-.+..+|...+...+|..+|+.-.+ |+.+. |-..|...+ .+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g--------~~ 453 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQ--------DI 453 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCc--------CH
Confidence 4455555555555444421 222333344444444444445544444433 22222 333444444 45
Q ss_pred HHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHH-HHHHhccCC
Q 000307 1125 DAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD-ILTCLTISD 1202 (1690)
Q Consensus 1125 drAI~aLe~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsK-i~~YLt~sD 1202 (1690)
+.|..+|+.|.+.. .|| .-++-.|+..|+..|+++.|++.++++.. .|..+...+... |..|...++
T Consensus 454 e~A~~lf~~M~~~Gl~pD--------~~tynsLI~~y~k~G~vd~A~~vf~eM~~---~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKAD--------CKLYTTLISTCAKSGKVDAMFEVFHEMVN---AGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCcC
Confidence 55555555544322 122 23444555555555555555555555542 222221111111 223444444
Q ss_pred ccchhHHHHH---------HHhhccccHHHHhhccchhhhhcCCCCCcccch----hhhhhHHHHHHHHHHHHHhhcCCc
Q 000307 1203 KLIFWVCCVY---------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLED----DEKQRAIKLIEMAVNSVELYSNGE 1269 (1690)
Q Consensus 1203 kc~AwLc~iY---------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlk----dEPdnalAL~smA~dYY~~~~ndE 1269 (1690)
-..|.-...- ...|..|.. .|.+.|..++|+.+ +....+ ..|+. +..-.+ ++.|.. .|+-
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~-a~~k~G~~deA~~l---f~eM~~~~~gi~PD~-vTynaL-I~ay~k-~G~l 595 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALIS-ACGQSGAVDRAFDV---LAEMKAETHPIDPDH-ITVGAL-MKACAN-AGQV 595 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHCCCHHHHHHH---HHHHHHhcCCCCCcH-HHHHHH-HHHHHH-CCCH
Confidence 3333111100 123333332 34455667777776 555533 35553 233333 343433 4443
Q ss_pred chhhhh-----cccc--hhHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCcchh-HHHHHHHhhccCCCccHHHHHH
Q 000307 1270 SLEKET-----NLRS--AHCFAVNHIWCMAVLNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEE 1339 (1690)
Q Consensus 1270 sla~~~-----n~k~--d~~tKLN~IRq~I~lEdse~al~LfdklLe~--~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~ 1339 (1690)
+.+... ...+ ...+=-.+|..+....+.+.|+.+|+++.+. .|+.... .|+.+|....+ .++|+.+|++
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~e 674 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 333333 1111 1222224566666666899999999999887 6766666 77777777666 7788999999
Q ss_pred HHHhC-CCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHH-----------HHH-Hh-hhcc-cccccchhhcccCCCCC
Q 000307 1340 ALIKW-PKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW-----------FHS-VW-KVQY-SQVEISDPLVADMSHSS 1404 (1690)
Q Consensus 1340 aL~~~-PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~f-----------f~g-ia-~~Q~-~~deALD~lr~g~s~i~ 1404 (1690)
+.+.. +-+.. .|+-||......+++++|+++.+.. |.. |. +.+. ..++|+++|+.-...
T Consensus 675 M~k~G~~pd~~----tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-- 748 (1060)
T PLN03218 675 ARKQGIKLGTV----SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-- 748 (1060)
T ss_pred HHHcCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence 88753 22334 7999999999999999999998761 222 11 1222 777888888743111
Q ss_pred CCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh--ccCCcHHHHH
Q 000307 1405 PESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA--AASEHFKHCV 1465 (1690)
Q Consensus 1405 ~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~--np~N~~i~cL 1465 (1690)
.+..|.+ +|..|-..+.+ .|+.++|...|+.+++. .|+.....||
T Consensus 749 -----Gi~Pd~~---------Ty~sLL~a~~k--~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 749 -----GLCPNTI---------TYSILLVASER--KDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred -----CCCCCHH---------HHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1123322 34555577888 88999999999988854 4444333344
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-07 Score=103.87 Aligned_cols=201 Identities=9% Similarity=-0.096 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----H
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1106 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----L 1106 (1690)
.+.|..++..+... |.++.|...|.++|+++|+.+.+|+.++.+|...+...+|.+.|++|++++|++.. +
T Consensus 64 a~~~~~~g~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSL-----GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46788888876654 78899999999999999999999999999999999999999999999999998866 6
Q ss_pred HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1107 w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
+..|...+ .|++|++.|......+ |+. . .......++...+++++|+..+.+.-. . .++
T Consensus 139 g~~l~~~g--------~~~eA~~~~~~al~~~-P~~-------~-~~~~~~~l~~~~~~~~~A~~~l~~~~~---~-~~~ 197 (296)
T PRK11189 139 GIALYYGG--------RYELAQDDLLAFYQDD-PND-------P-YRALWLYLAESKLDPKQAKENLKQRYE---K-LDK 197 (296)
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------H-HHHHHHHHHHccCCHHHHHHHHHHHHh---h-CCc
Confidence 67788888 9999999999988877 654 1 112223455667899999998855332 1 122
Q ss_pred ccccHHHHHHHhccCCccchhHHHHH-------------HHhhccccHHHHhhccchhhhhcCCCCCcccchhhh-hhHH
Q 000307 1187 HSLFLSDILTCLTISDKLIFWVCCVY-------------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK-QRAI 1252 (1690)
Q Consensus 1187 ~~lSLsKi~~YLt~sDkc~AwLc~iY-------------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEP-dnal 1252 (1690)
...... ..++..++...+-....+ ..+-...+|.+|.+.|...+|... |.+++..+| +.+-
T Consensus 198 ~~~~~~--~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~---~~~Al~~~~~~~~e 272 (296)
T PRK11189 198 EQWGWN--IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL---FKLALANNVYNFVE 272 (296)
T ss_pred cccHHH--HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCchHHH
Confidence 122222 333334443322111111 112234569999999999999999 999998886 6655
Q ss_pred HHHHHHHHHHH
Q 000307 1253 KLIEMAVNSVE 1263 (1690)
Q Consensus 1253 AL~smA~dYY~ 1263 (1690)
+.+.. +....
T Consensus 273 ~~~~~-~e~~~ 282 (296)
T PRK11189 273 HRYAL-LELAL 282 (296)
T ss_pred HHHHH-HHHHH
Confidence 55544 34333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-07 Score=94.52 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=124.5
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC--C
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE--G 1102 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP--~ 1102 (1690)
+..+.+...|..+|..++.+ |+++.|+..|.++++.+|..+.+|+.++.+|...+...++..+|++|++..+ .
T Consensus 59 ~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQL-----GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HhCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 33455668888888877766 7889999999999999999999999999999999999999999999998642 2
Q ss_pred CHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1103 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1103 NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
... ++..|...+ .+++|+..|.+..... |+. .+.++.++.+|...|++++|+..+.+...
T Consensus 134 ~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAG--------DFDKAEKYLTRALQID-PQR-------PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 778888888 9999999998888776 666 67889999999999999999999888775
Q ss_pred cccCCCCcccccHHHHHHHhccCCccch
Q 000307 1179 PATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1179 ~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
....++ .........+...++...|
T Consensus 198 --~~~~~~-~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 198 --TYNQTA-ESLWLGIRIARALGDVAAA 222 (234)
T ss_pred --hCCCCH-HHHHHHHHHHHHHhhHHHH
Confidence 322233 2222334455555554444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-09 Score=79.88 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=21.0
Q ss_pred cceeecccc-cccCCCCcchhhh
Q 000307 877 PLCMYELRG-KCNNDECPWQHVK 898 (1690)
Q Consensus 877 ~lC~fel~G-~CNd~~C~wQH~~ 898 (1690)
|||+|||+| +|||++|.|||+|
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCCCCCCccccC
Confidence 699999998 9999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.7e-06 Score=104.28 Aligned_cols=329 Identities=9% Similarity=0.021 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC--CCC--HH-HHHHHHhcCCCcccchHH
Q 000307 1050 EGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGS--YA-LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPt-SAeaWyeyl~lY~~~~~~~ea~emfekAVela--P~N--Y~-Lw~mYINsr~s~ddrl~a 1123 (1690)
|+++.|+.+|.+.++..+. +...|..++..+...+....+.+.+..+++.. |+- |. |-.+|...+ .
T Consensus 203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--------~ 274 (697)
T PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG--------D 274 (697)
T ss_pred cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC--------C
Confidence 7788888888888876654 45677778888888888777877777776654 222 22 788999999 8
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHH-HHHHhccCC
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD-ILTCLTISD 1202 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsK-i~~YLt~sD 1202 (1690)
+++|+.+|++|...+ ...+..|+..|++.|++++|+..+.++.. .|..+...+... +..|...++
T Consensus 275 ~~~A~~vf~~m~~~~-----------~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 275 IEDARCVFDGMPEKT-----------TVAWNSMLAGYALHGYSEEALCLYYEMRD---SGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHHhCCCCC-----------hhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhccc
Confidence 999999998885432 45788999999999999999999999874 454443344433 446777777
Q ss_pred ccchhHHHHHHHh--------hccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhh
Q 000307 1203 KLIFWVCCVYLVI--------YRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKE 1274 (1690)
Q Consensus 1203 kc~AwLc~iYdl~--------YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~ 1274 (1690)
-..|.-...+.+. -...+.+.|...|..++|..+ +.+..+ | ++...-.| +..|.. .|+-+.+..
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v---f~~m~~--~-d~~t~n~l-I~~y~~-~G~~~~A~~ 412 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV---FDRMPR--K-NLISWNAL-IAGYGN-HGRGTKAVE 412 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH---HHhCCC--C-CeeeHHHH-HHHHHH-cCCHHHHHH
Confidence 6666322222221 122345666677777888776 555533 3 33444455 344433 333232222
Q ss_pred h-------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh----HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1275 T-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1275 ~-------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
. +-+.+..|=..+|..+......+++..+|+.+.+.++-.+++ .|+..|- ..+..++|...|+++
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~--- 488 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-REGLLDEAYAMIRRA--- 488 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-hcCCHHHHHHHHHHC---
Confidence 2 122222222233333333336777777777777765544443 3333333 333356666555432
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccch
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1423 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~ 1423 (1690)
|-... -.+|+.|+...-..++++.+..+.+.-+ . +.+ . ....|
T Consensus 489 -~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-----------------~-----~~p----~-~~~~y------- 531 (697)
T PLN03081 489 -PFKPT--VNMWAALLTACRIHKNLELGRLAAEKLY-----------------G-----MGP----E-KLNNY------- 531 (697)
T ss_pred -CCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHh-----------------C-----CCC----C-CCcch-------
Confidence 32222 1257777777777777777777664411 1 111 1 12356
Q ss_pred hhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh
Q 000307 1424 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1455 (1690)
Q Consensus 1424 d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~ 1455 (1690)
-.|..+|.+ .|+++||...++...+.
T Consensus 532 ----~~L~~~y~~--~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 532 ----VVLLNLYNS--SGRQAEAAKVVETLKRK 557 (697)
T ss_pred ----HHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 788889999 99999999999876643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-06 Score=103.05 Aligned_cols=144 Identities=15% Similarity=0.029 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc-hhHHHHHHHHH--HHHhcCChhH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVE--YALQNGRHDF 1370 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~-g~qcaW~QLiq--~Al~~e~~d~ 1370 (1690)
++-.+...|+++++++|....+ -+.+.|++..+ ++..+..|..|..++|.|.. |||..=+-+|- +.=...++++
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~-~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ-SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc-cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999996 88999999999 99999999999999999999 55554332221 2222345666
Q ss_pred HHHHHHHHH-----HHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1371 AAELMDRWF-----HSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1371 ai~L~~~ff-----~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
++.|--.+. ++++.|.. .-.++..+|...-.-.+ .-++.| .+-+.+|-- +++.+.
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~Evy-----------~~fAeiLtD--qqqFd~ 480 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP------NCPEVY-----------NLFAEILTD--QQQFDK 480 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCchHH-----------HHHHHHHhh--HHhHHH
Confidence 666554411 22333322 55555555554311111 135777 888888988 999999
Q ss_pred HHHHHHHHHhhccCC
Q 000307 1445 ARLAIDAALKAAASE 1459 (1690)
Q Consensus 1445 Af~AYDkALk~np~N 1459 (1690)
|..-||+|+...|.+
T Consensus 481 A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 481 AVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999999986
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-06 Score=100.28 Aligned_cols=241 Identities=14% Similarity=0.086 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--------HHHHHHhcCCCcccch
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--------Lw~mYINsr~s~ddrl 1121 (1690)
++-|+|.++|-.-++.||..-++...++++|-++|....|..+-..-++-..-.+. |+.-|+..+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG------- 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG------- 121 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh-------
Confidence 34589999999999999999999999999999999999888776655544322222 889999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHH-----HH
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI-----LT 1196 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi-----~~ 1196 (1690)
-||+|-++|..++.-. + .....+.+|+.+|.++++++|||.+-.+|.. +.|..- .+-++-| +.
T Consensus 122 -l~DRAE~~f~~L~de~--e------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k--~~~q~~-~~eIAqfyCELAq~ 189 (389)
T COG2956 122 -LLDRAEDIFNQLVDEG--E------FAEGALQQLLNIYQATREWEKAIDVAERLVK--LGGQTY-RVEIAQFYCELAQQ 189 (389)
T ss_pred -hhhHHHHHHHHHhcch--h------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--cCCccc-hhHHHHHHHHHHHH
Confidence 9999999998886632 2 1268899999999999999999999998985 444442 3333222 23
Q ss_pred HhccCCccch--hHHHHH-----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCc
Q 000307 1197 CLTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1269 (1690)
Q Consensus 1197 YLt~sDkc~A--wLc~iY-----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndE 1269 (1690)
++.-+|-..| ||...+ -++=.+++|++++..|....|... +..++.-||+-+--+.++=+..|.+ .|+.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~---~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~ 265 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA---LERVLEQNPEYLSEVLEMLYECYAQ-LGKP 265 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH---HHHHHHhChHHHHHHHHHHHHHHHH-hCCH
Confidence 3444555554 777776 567778999999999999999888 7888888888887777776667776 5542
Q ss_pred chhhhh-ccc---chhHHHHHHHHHHHH-hcchHHHHHHHHHHHHhCCC
Q 000307 1270 SLEKET-NLR---SAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPS 1313 (1690)
Q Consensus 1270 sla~~~-n~k---~d~~tKLN~IRq~I~-lEdse~al~LfdklLe~~P~ 1313 (1690)
.-.... ... ....-.+.++..+|. .++.+.|..++.+-+..+|+
T Consensus 266 ~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 266 AEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 221111 000 001112233444454 44555555555555555554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-06 Score=99.62 Aligned_cols=288 Identities=11% Similarity=0.024 Sum_probs=188.4
Q ss_pred HHHHhCCCCchHHHHHHHHHhcCCCC---HH-HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHH
Q 000307 1078 LIFYSNTNSVGKDDMFSYSVKHNEGS---YA-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF 1153 (1690)
Q Consensus 1078 ~lY~~~~~~~ea~emfekAVelaP~N---Y~-Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvL 1153 (1690)
.+-...+....|...+.++.++.|+. |- .+..+..++ .+++|...|.+..+.++.+. +.+.
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--------~~~~A~~~l~~a~~~~p~~~-------l~~~ 156 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--------DEARANQHLEEAAELAGNDN-------ILVE 156 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCcCc-------hHHH
Confidence 34566788899999999999999865 33 578889999 99999999998877773334 4667
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+..++++.++|+++.|+..+.++.. ..-.++ .....-...|+..+|- +++
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~-~~l~ll~~~~~~~~d~---------------------------~~a 206 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLE--MAPRHK-EVLKLAEEAYIRSGAW---------------------------QAL 206 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhH---------------------------HHH
Confidence 7779999999999999999999886 323333 3333334445554444 333
Q ss_pred hcCCCCCcccch---hhhhhHHHHHHHHH-HHHHh---hcCCcchhhhh--c---ccchhHHHHHHHHHHHHhcchHHHH
Q 000307 1234 FAIDWPPVQLED---DEKQRAIKLIEMAV-NSVEL---YSNGESLEKET--N---LRSAHCFAVNHIWCMAVLNGLECSM 1301 (1690)
Q Consensus 1234 f~I~W~yvqvlk---dEPdnalAL~smA~-dYY~~---~~ndEsla~~~--n---~k~d~~tKLN~IRq~I~lEdse~al 1301 (1690)
..+ +..+++ .+|.....+-.++. ..... ..+-+.+..-. . .+-+..+-+.+...++...+.+.|.
T Consensus 207 ~~~---l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 207 DDI---IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 332 222221 23332211111110 01100 00000111000 1 1123455556666777777999999
Q ss_pred HHHHHHHHhCCCcchh----HHHHHHHhhccCCCccHHHHHHHHHhCCCCC--chhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1302 NLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1302 ~LfdklLe~~P~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa--~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
.++.+.++..|++..+ .....++...+ +..+...++.+++..|+++ . +..-|...++..++|++|.+.+
T Consensus 284 ~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~~lk~~p~~~~~~----ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 284 EIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIEKQAKNVDDKPKCC----INRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999974 33333344433 5567799999999999999 6 7788888999999999999877
Q ss_pred HHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh
Q 000307 1376 DRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1455 (1690)
Q Consensus 1376 ~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~ 1455 (1690)
+. -.+++ ..+ ....+ .-+|..|++ .|+.++|...|.++|+.
T Consensus 359 e~------------a~a~~--------~~p------~~~~~-----------~~La~ll~~--~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 359 KN------------VAACK--------EQL------DANDL-----------AMAADAFDQ--AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HH------------hHHhh--------cCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHH
Confidence 42 00111 011 01124 688999999 99999999999999865
Q ss_pred cc
Q 000307 1456 AA 1457 (1690)
Q Consensus 1456 np 1457 (1690)
..
T Consensus 400 ~~ 401 (409)
T TIGR00540 400 ML 401 (409)
T ss_pred Hh
Confidence 43
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-06 Score=108.93 Aligned_cols=349 Identities=11% Similarity=0.052 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhc--CCCCHH---HHHHHHhcCCCcccchHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA---LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVel--aP~NY~---Lw~mYINsr~s~ddrl~a 1123 (1690)
.|+++.|..+|....+ .+...|..+...|.+.+..++|.++|+...+. .|+.+. +-..|.+.+ .
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--------~ 404 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--------D 404 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--------h
Confidence 4566666666665432 34456666666666666666666666654332 244444 344455555 6
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1203 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDk 1203 (1690)
+++|.++++.+.+..-... ..+.-.|++.|+..|++++|+..++++.. .+.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~-------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~----------------- 455 (857)
T PLN03077 405 LDVGVKLHELAERKGLISY-------VVVANALIEMYSKCKCIDKALEVFHNIPE-----KDV----------------- 455 (857)
T ss_pred HHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCe-----------------
Confidence 6666666666555321112 34556677777777777777776666553 111
Q ss_pred cchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh-hhhhHHHHHHHHHHHHHhhcCCcchhhhh-------
Q 000307 1204 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD-EKQRAIKLIEMAVNSVELYSNGESLEKET------- 1275 (1690)
Q Consensus 1204 c~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd-EPdnalAL~smA~dYY~~~~ndEsla~~~------- 1275 (1690)
+.|..|. .-|.++|...||+.+ +.+.++. .|+.. .+..+ +..|.. .++-+...+.
T Consensus 456 ----------vs~~~mi-~~~~~~g~~~eA~~l---f~~m~~~~~pd~~-t~~~l-L~a~~~-~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 456 ----------ISWTSII-AGLRLNNRCFEALIF---FRQMLLTLKPNSV-TLIAA-LSACAR-IGALMCGKEIHAHVLRT 518 (857)
T ss_pred ----------eeHHHHH-HHHHHCCCHHHHHHH---HHHHHhCCCCCHh-HHHHH-HHHHhh-hchHHHhHHHHHHHHHh
Confidence 1122221 223455666666665 4444322 33332 22333 344443 3333222222
Q ss_pred cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHH--hCCCCCchhH
Q 000307 1276 NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALI--KWPKGVPGIQ 1352 (1690)
Q Consensus 1276 n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~--~~PkNa~g~q 1352 (1690)
....+..+.=.+|.-|....+.+.|..+|+.. .|+-+.. .|..+|.+..+ .++|+.+|++..+ +.|+...
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T--- 591 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVT--- 591 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCccc---
Confidence 11111111113344444455788888888875 3433333 77777766655 7888888888776 4566655
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc---cccccchhhcccCCCCCCCCCCCCCccccc
Q 000307 1353 CIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY---SQVEISDPLVADMSHSSPESTSTSDPEFSV 1417 (1690)
Q Consensus 1353 caW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~---~~deALD~lr~g~s~i~~es~s~~vSDfy~ 1417 (1690)
++-+|...-+.|.++++.++... -|.++-..-. ..++|.+.++.- ++.++ ...|
T Consensus 592 --~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~pd------~~~~- 660 (857)
T PLN03077 592 --FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM--PITPD------PAVW- 660 (857)
T ss_pred --HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC--CCCCC------HHHH-
Confidence 66777777778888888777765 1222222111 567777777632 12110 2223
Q ss_pred ccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000307 1418 SNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1487 (1690)
Q Consensus 1418 ~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~ 1487 (1690)
-++|+ .+.. +++.+.|..|.++.++..|++.-..++.=-.|. .....++|+++..
T Consensus 661 ---------~aLl~-ac~~--~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya---~~g~~~~a~~vr~ 715 (857)
T PLN03077 661 ---------GALLN-ACRI--HRHVELGELAAQHIFELDPNSVGYYILLCNLYA---DAGKWDEVARVRK 715 (857)
T ss_pred ---------HHHHH-HHHH--cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH---HCCChHHHHHHHH
Confidence 14444 4444 899999999999999999976333333222332 2344777777666
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-06 Score=102.01 Aligned_cols=274 Identities=16% Similarity=0.159 Sum_probs=200.6
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHh---CC-CC---------HHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEA---DP-TS---------EILWITYLLIFYSNTNSVGKDDMFSYSVK 1098 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEI---NP-tS---------AeaWyeyl~lY~~~~~~~ea~emfekAVe 1098 (1690)
+.=+.-|+.+|--..+ +.|+.|.+.+....+. -+ .+ ++++.+-+-++.-.++..++++.|.+|++
T Consensus 277 Da~l~~~l~~l~~~~~--e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 277 DAALAEALEALEKGLE--EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred hhhHHHHHHHHHhhCc--hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 4445555555544332 4577777766554321 11 12 66777777777777889999999999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
++|.+-. ++.+|+... +=.+....|-....- ||.. -|+++.+.|++...++|+.||+-
T Consensus 355 l~~~~~~lyI~~a~~y~d~~--------~~~~~~~~F~~A~~l-dp~n-------~dvYyHRgQm~flL~q~e~A~aD-- 416 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADEN--------QSEKMWKDFNKAEDL-DPEN-------PDVYYHRGQMRFLLQQYEEAIAD-- 416 (606)
T ss_pred cCcccchHHHHHHHHHhhhh--------ccHHHHHHHHHHHhc-CCCC-------CchhHhHHHHHHHHHHHHHHHHH--
Confidence 9987644 889999888 667777777443334 4888 89999999999999999999871
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
|++....+|+++++.
T Consensus 417 -----------------------------------------------------------------F~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 417 -----------------------------------------------------------------FQKAISLDPENAYAY 431 (606)
T ss_pred -----------------------------------------------------------------HHHHhhcChhhhHHH
Confidence 122233589999999
Q ss_pred HHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCcc
Q 000307 1255 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLS 1333 (1690)
Q Consensus 1255 ~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~A 1333 (1690)
+.+++-.|++ + ..++++..|....+.-|.|+++ .|+|.-|.-++.=+.|
T Consensus 432 iQl~~a~Yr~--~----------------------------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 432 IQLCCALYRQ--H----------------------------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHH--H----------------------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 9999878874 1 3567888999999999999999 9999998888878899
Q ss_pred HHHHHHHHHhCCC------CCc-hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCC
Q 000307 1334 SVGFEEALIKWPK------GVP-GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1334 i~vfe~aL~~~Pk------Na~-g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~e 1406 (1690)
+..|.++++++|+ |.. .++-+-+ ..-|. ++++.++.||+. |++ +.+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l---~~qwk-~d~~~a~~Ll~K--------------A~e--------~Dp- 534 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALL---VLQWK-EDINQAENLLRK--------------AIE--------LDP- 534 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHh---hhchh-hhHHHHHHHHHH--------------HHc--------cCc-
Confidence 9999999999999 554 4444432 22365 699999999965 222 212
Q ss_pred CCCCCCcccccccccchhhhhHHHHH--HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHH
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1468 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNY 1468 (1690)
.+| ++|.++ ..-| +|+.+||.+.||+++.++-.+ ..-++=|
T Consensus 535 -----kce------------~A~~tlaq~~lQ--~~~i~eAielFEksa~lArt~--~E~~~a~ 577 (606)
T KOG0547|consen 535 -----KCE------------QAYETLAQFELQ--RGKIDEAIELFEKSAQLARTE--SEMVHAY 577 (606)
T ss_pred -----hHH------------HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 134 156555 5566 999999999999999998866 4444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-07 Score=98.16 Aligned_cols=118 Identities=10% Similarity=0.120 Sum_probs=104.3
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHH-HHhcCCCcccch
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM-YINSRTPLNHRL 1121 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~m-YINsr~s~ddrl 1121 (1690)
+..+.++.++..|.++|+.+|+++++|+.++.+|...+....|.+.|++|++++|++-. ++.. |...+ .
T Consensus 50 ~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g------~ 123 (198)
T PRK10370 50 ASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG------Q 123 (198)
T ss_pred cCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------C
Confidence 35678899999999999999999999999999999999999999999999999999988 4442 34444 0
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
..+++|+++|.+..+.. |+. .++++.|...+.+.|+|++||..+.++..
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANE-------VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12699999999988888 888 89999999999999999999999999876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-05 Score=91.41 Aligned_cols=483 Identities=17% Similarity=0.154 Sum_probs=285.4
Q ss_pred hhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
-+|...-.+.+.||++|.--..| ..+.-|-+++.|||+.|-.+-.+|..|+.+-++.+..+-|...+-+||..-|
T Consensus 64 d~irrnR~~~~~WikYaqwEesq-----~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQ-----KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 37777778899999999777666 6689999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccccc
Q 000307 1102 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1181 (1690)
Q Consensus 1102 ~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al 1181 (1690)
.=..||.-|+-.+ +.+-+-.-|-++|++-..-. ||. ..-+..+.+-...++++-|-..+.|..-
T Consensus 139 RVdqlWyKY~ymE----E~LgNi~gaRqiferW~~w~-P~e--------qaW~sfI~fElRykeieraR~IYerfV~--- 202 (677)
T KOG1915|consen 139 RVDQLWYKYIYME----EMLGNIAGARQIFERWMEWE-PDE--------QAWLSFIKFELRYKEIERARSIYERFVL--- 202 (677)
T ss_pred hHHHHHHHHHHHH----HHhcccHHHHHHHHHHHcCC-CcH--------HHHHHHHHHHHHhhHHHHHHHHHHHHhe---
Confidence 9888998888766 44556777888888877776 663 4456667777778888888776666654
Q ss_pred CCCCcccccHHHHHHHhccCCcc--chhHHHHHHHhhccccHH-----HHhhc----cchhh---hhcCCCCCcccc-hh
Q 000307 1182 GSNDRHSLFLSDILTCLTISDKL--IFWVCCVYLVIYRKLPDA-----VLQLL----ECEKE---LFAIDWPPVQLE-DD 1246 (1690)
Q Consensus 1182 ~G~sE~~lSLsKi~~YLt~sDkc--~AwLc~iYdl~YrvLPGd-----~y~qn----e~~KE---Af~I~W~yvqvl-kd 1246 (1690)
+.|. ++...-|-.-..++ ++-.-.+|+..-..+-.+ +|-.+ +..|| |=.| |.=.+ ..
T Consensus 203 --~HP~---v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i---ykyAld~~ 274 (677)
T KOG1915|consen 203 --VHPK---VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI---YKYALDHI 274 (677)
T ss_pred --eccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 3441 11122221111111 111112221111110000 00000 00010 0000 00000 01
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhh-ccc-ch-----------hHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKET-NLR-SA-----------HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS 1313 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~-n~k-~d-----------~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~ 1313 (1690)
..+.+.-|+.--+..=.+|...+...... +++ +. -++=..++|..=...+.+.+...+++++.--|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 11222222222111222211111211111 111 11 111112222111122888999999999988887
Q ss_pred cch---------h-HHHHHH--HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH----
Q 000307 1314 CLE---------L-VLMKAR--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR---- 1377 (1690)
Q Consensus 1314 d~e---------L-~L~Aay--L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~---- 1377 (1690)
-.+ | .=|+.| |..++ .+-+..||+..|.+=|...=.-.-+|..|+++.+.+.+.+.|.+|+-.
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 443 2 334555 56666 777889999999999998878888999999999999999999998855
Q ss_pred -----HHHHHhh--hcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHH
Q 000307 1378 -----WFHSVWK--VQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1449 (1690)
Q Consensus 1378 -----ff~gia~--~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AY 1449 (1690)
.|.+.-. +|. ..+.--.+..+-..- +|.++- ++++-.-.+.+.|+.+.|.+.|
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~---------------~Pe~c~----~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF---------------SPENCY----AWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc---------------ChHhhH----HHHHHHHHHHHhhhHHHHHHHH
Confidence 3333211 111 222111111111111 122222 6777666777788888888888
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhh-----hcccccccc-----------cchhhh
Q 000307 1450 DAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDR-----ARSLPYLKL-----------LPRQFI 1513 (1690)
Q Consensus 1450 DkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDT-----AWILf~~~~-----------lARiYI 1513 (1690)
+=|++-.....-+..|.-|.-|=-.++. ..||- ++-..|||+ .||-|.+-. ++..=|
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E-~ekaR------~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGE-FEKAR------ALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcch-HHHHH------HHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhc
Confidence 8888777766667888888888554442 22221 233789997 399886533 334444
Q ss_pred ccccchhhHHHHhhhcCC--CCCChhhHHHHHhhc------cC--------CCCccccccccc
Q 000307 1514 NNIERPRLQQLIDNLLSP--VSSDFSLVNLVLEVC------YG--------PSLLPRNFSKLK 1560 (1690)
Q Consensus 1514 ~~i~k~rv~~liDqaL~~--~S~dsS~vNkALE~W------~g--------~slLpqKI~~kK 1560 (1690)
+.--.-|-|+..|.|+.. .+.+-...=..||.| +| .+.+|+||++++
T Consensus 568 ~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr 630 (677)
T KOG1915|consen 568 TDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRR 630 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhh
Confidence 433445677788888766 222222333378889 33 344777776655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-05 Score=100.02 Aligned_cols=370 Identities=14% Similarity=0.093 Sum_probs=222.0
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPt-SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
+++|-+.+|-.+++- |+|..|+.+|.......+. ++.+||-++.+|+.++..++|.+.|++++.++|+|+.
T Consensus 413 ~~dL~~d~a~al~~~-----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 413 DVDLYLDLADALTNI-----GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred hHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 336666666666654 9999999999998877665 5889999999999999999999999999999999999
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC----cchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc--
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI-- 1178 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD----r~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq-- 1178 (1690)
|+.+|..++ .-++|++.++++. + +| ...+.-...=+++-++++|-+.|+.++-|.+...|..
T Consensus 488 ~Lasl~~~~g--------~~EkalEtL~~~~--~-~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 488 TLASLYQQLG--------NHEKALETLEQII--N-PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hHHHHHHhcC--------CHHHHHHHHhccc--C-CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999 9999999999976 2 55 2222333444568899999999999999887766552
Q ss_pred --c--------------cc---CCCCcccccHHHHHHHhccCCccch--hHHHH--H-HHhhcccc-HH----------H
Q 000307 1179 --P--------------AT---GSNDRHSLFLSDILTCLTISDKLIF--WVCCV--Y-LVIYRKLP-DA----------V 1223 (1690)
Q Consensus 1179 --~--------------Al---~G~sE~~lSLsKi~~YLt~sDkc~A--wLc~i--Y-dl~YrvLP-Gd----------~ 1223 (1690)
. .+ .+-.. ++.-..++.-...+|.-.+ .++.- . -+..+.|. .+ -
T Consensus 557 ~~~~~~f~~~~k~r~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~ 635 (895)
T KOG2076|consen 557 LKKRYIFPRNKKKRRRAIAGTTSKRYS-ELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILS 635 (895)
T ss_pred HHHHHhcchHHHHHHHhhccccccccc-hhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 0 00 00000 1111111111222221111 01100 0 11111111 11 1
Q ss_pred HhhccchhhhhcCCCCCcccc-----hhhhhh--HHHHHHHHHHHHHhhcCCcchhhhh----------cccchhHHHHH
Q 000307 1224 LQLLECEKELFAIDWPPVQLE-----DDEKQR--AIKLIEMAVNSVELYSNGESLEKET----------NLRSAHCFAVN 1286 (1690)
Q Consensus 1224 y~qne~~KEAf~I~W~yvqvl-----kdEPdn--alAL~smA~dYY~~~~ndEsla~~~----------n~k~d~~tKLN 1286 (1690)
+...++..||+.| .-..+ -.+++. -+.-+.++..+|.. +...+-+- +.++-+-+--|
T Consensus 636 L~k~~r~qeAl~v---v~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~---d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 636 LAKLQRVQEALSV---VFTALEAYIFFQDSEIRKELQFLGLKASLYAR---DPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHhHHHHHHH---HHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2222344444433 10000 001110 11111111122211 11111000 00111111113
Q ss_pred -HHHHHHHhcchHHHHHHHHHHHHhCCCc-chh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1287 -HIWCMAVLNGLECSMNLLEKYIKLYPSC-LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1287 -~IRq~I~lEdse~al~LfdklLe~~P~d-~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
.+..++..-.-.+-..++.++|..+|.+ .-+ .+++-++....-=..|+..|-.++...|+++-.-.|+=..+|.+++
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 2222222224456677888889999998 444 7888888777766688899999999999999988999888888888
Q ss_pred hcCChhHHHHHHHH---HHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhc
Q 000307 1364 QNGRHDFAAELMDR---WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1440 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~---ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg 1440 (1690)
+. .+..+ -+.||+..+. +.+ +| +.. .+|+ .|==||-+||+ -|
T Consensus 790 qr-------~v~~Rh~~i~qG~afL~R-Y~~----lR-----~~~--------------~~QE--a~YNigRayh~--~g 834 (895)
T KOG2076|consen 790 QR-------RVSNRHAQIAQGFAFLKR-YKE----LR-----RCE--------------EKQE--AFYNIGRAYHQ--IG 834 (895)
T ss_pred HH-------HHhhhHHHHHHHHHHHHH-HHH----hh-----ccH--------------HHHH--HHHHHHHHHHH--cc
Confidence 76 23333 4566776643 111 11 000 1222 12357889999 99
Q ss_pred ChHHHHHHHHHHHhhcc
Q 000307 1441 DWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1441 ~~~EAf~AYDkALk~np 1457 (1690)
-..=|..-|+|||..-|
T Consensus 835 l~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 835 LVHLAVSYYEKVLEVSP 851 (895)
T ss_pred cHHHHHHHHHHHhCCCc
Confidence 99999999999999865
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=98.32 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=103.0
Q ss_pred CchhhHHHHHHHHHHHHH---hCCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcc
Q 000307 1047 NKLEGMKKALSLLSRALE---ADPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLN 1118 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALE---INPtS-AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~d 1118 (1690)
.+.+..+.++.-|+..|+ ++|.. +.+|+.++.+|...+...++...|.+|++++|++.. ++.+|...+
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g---- 112 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG---- 112 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----
Confidence 445778999999999996 44444 788999999999999999999999999999999877 888999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1119 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.|++|+..|.+..+.+ |+. .+.++.+..+|...|+++.|+..+.+..+
T Consensus 113 ----~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 113 ----NFDAAYEAFDSVLELD-PTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred ----CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998888877 887 78899999999999999999998888775
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.4e-07 Score=86.93 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHH
Q 000307 1057 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1132 (1690)
Q Consensus 1057 dLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe 1132 (1690)
.+|.++|+.+|+++.+.+.++..|...+...++.++|+++++.+|.+-. +++.|+..+ .|++|+..|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998766 788888888 9999999998
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1133 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1133 ~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+..... |+. .++.+.+..+|...|++++|+..+.+...
T Consensus 76 ~~~~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 76 LAAALD-PDD-------PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHhcC-CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877776 887 89999999999999999999999988886
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-06 Score=97.10 Aligned_cols=349 Identities=14% Similarity=0.054 Sum_probs=226.1
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
.|++--+++--..| +-|+|..||.-|-.|+|.||++=.++|--+-.|..++....+..-|++-+++-|+=+.
T Consensus 36 advekhlElGk~ll-----a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELL-----ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 34444444443333 3478889999999999999999999999999999999999999999999999986555
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC----cchhhh--hhHHH--HHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASA--CILDL--FLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD----r~~~Sa--~ILDv--LL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
-+.+.+.++ .+++|+.=|-...... |. ++.+|- -|.+- |-+++--+.-+|++..||..|+.|
T Consensus 111 QRg~vllK~G--------ele~A~~DF~~vl~~~-~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 111 QRGVVLLKQG--------ELEQAEADFDQVLQHE-PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred Hhchhhhhcc--------cHHHHHHHHHHHHhcC-CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 567778888 8888888776655544 32 112221 22222 222233344567888888888887
Q ss_pred cccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHH
Q 000307 1177 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1177 Eq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
+. ..+ .+..++.+-.+-|.--|.++.|+.= ..++.+-.-||.-.+++
T Consensus 182 lE-----i~~-------------------------Wda~l~~~Rakc~i~~~e~k~AI~D---lk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 182 LE-----IQP-------------------------WDASLRQARAKCYIAEGEPKKAIHD---LKQASKLSQDNTEGHYK 228 (504)
T ss_pred Hh-----cCc-------------------------chhHHHHHHHHHHHhcCcHHHHHHH---HHHHHhccccchHHHHH
Confidence 75 333 3445555666667777777777553 35555666667777777
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHH--HH-------------------HHHHHHhcchHHHHHHHHHHHHhCCCcc
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAV--NH-------------------IWCMAVLNGLECSMNLLEKYIKLYPSCL 1315 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKL--N~-------------------IRq~I~lEdse~al~LfdklLe~~P~d~ 1315 (1690)
++-=+|. +|+-+.+-. .+-.|+|+ .| +.+.|...+++.|+.-.+++|+..|+.+
T Consensus 229 is~L~Y~--vgd~~~sL~---~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 229 ISQLLYT--VGDAENSLK---EIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHHHHh--hhhHHHHHH---HHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 7655777 555443322 22233333 12 2222222289999999999999999988
Q ss_pred hh-----HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhccccc
Q 000307 1316 EL-----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQV 1390 (1690)
Q Consensus 1316 eL-----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~d 1390 (1690)
.+ .+.+.--...+-..+|+.++.++|.++|+++. +..+-++..+-.+.||.||.--+. .-....+..
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~----~l~dRAeA~l~dE~YD~AI~dye~----A~e~n~sn~ 375 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ----VLCDRAEAYLGDEMYDDAIHDYEK----ALELNESNT 375 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH----HHHHHHHHHhhhHHHHHHHHHHHH----HHhcCcccH
Confidence 77 23333334444466899999999999999999 666668877777788888765332 111111222
Q ss_pred cc---chhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHH-HHhhccCC
Q 000307 1391 EI---SDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA-ALKAAASE 1459 (1690)
Q Consensus 1391 eA---LD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDk-ALk~np~N 1459 (1690)
+| ++--++...+. -.-|+| -|||-=. ..+..|-..||-| |.+|-|+|
T Consensus 376 ~~reGle~Akrlkkqs-------~kRDYY-----------KILGVkR----nAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 376 RAREGLERAKRLKKQS-------GKRDYY-----------KILGVKR----NASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHHHHHh-------ccchHH-----------HHhhhcc----cccHHHHHHHHHHHHHhcCCcc
Confidence 22 22222222222 236888 8888632 3467788889988 56999999
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-06 Score=92.43 Aligned_cols=107 Identities=13% Similarity=0.169 Sum_probs=95.0
Q ss_pred hhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCC--CchHHHHHHHHHh
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI-FYSNTN--SVGKDDMFSYSVK 1098 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~l-Y~~~~~--~~ea~emfekAVe 1098 (1690)
..|+..|.+.++|+.|+..++.. |+++.|+..|.+|++++|+++.+|+.|+.. |+..+. ..++.+++++|++
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~-----g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWR-----NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46777889999999999988876 788999999999999999999999999995 566666 4899999999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD 1141 (1690)
.+|++-. |+..|...+ .|++|+..|+.+.....++
T Consensus 139 ~dP~~~~al~~LA~~~~~~g--------~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQA--------DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCC
Confidence 9999877 889999999 9999999999988877333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-06 Score=89.39 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=123.1
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSA---eaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
...+.++.+|..++.. |+++.|+..|.+.++.+|+++ .+|+.++.+|...++..+|.+.|+++++..|++..
T Consensus 31 ~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDS-----GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 4448889998888775 788999999999999999987 68999999999999999999999999999997664
Q ss_pred -------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhh----------hHHHHHHHHHHHhhhcCHHH
Q 000307 1106 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC----------ILDLFLQMLQCFCMSGNTEK 1168 (1690)
Q Consensus 1106 -------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~----------ILDvLL~LvqLY~qSGnydK 1168 (1690)
++..|.+.........-.+++|++.|.+....+ |+....-.. +....+.+..+|...|++++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 455555542222223347999999999999888 664211110 11223467889999999999
Q ss_pred HHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1169 AIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1169 AI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
||..+.++....-++.............|...+|...|
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 99988887751111111112333445566666666555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=89.06 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=75.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHH
Q 000307 1057 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1132 (1690)
Q Consensus 1057 dLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe 1132 (1690)
.+|.+||++||++ |+.++..+.+++...++.++|.+|+.++|+++. ++.++...+ .|++|+..|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFYG 82 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHHH
Confidence 5677777777775 556677777777777777777777777777776 666677777 7777777777
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1133 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1133 ~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+..+.. |+. -+.++.+..+|...|++++||..+.+...
T Consensus 83 ~Al~l~-p~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 83 HALMLD-ASH-------PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHhcC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777666 665 67777777777777777777777766654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-05 Score=90.55 Aligned_cols=283 Identities=12% Similarity=0.117 Sum_probs=183.7
Q ss_pred HHHHhCCCCchHHHHHHHHHhcC--CCCHH-HH-HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHH
Q 000307 1078 LIFYSNTNSVGKDDMFSYSVKHN--EGSYA-LW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF 1153 (1690)
Q Consensus 1078 ~lY~~~~~~~ea~emfekAVela--P~NY~-Lw-~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvL 1153 (1690)
.+.+.-|+-..+..++.++-+.. |.-|. ++ ......+ ++++|...|.++++.. |+. . +-..
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g--------~~~~A~~~l~~A~~~~-~~~--~----~~~~ 156 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRG--------DEARANQHLERAAELA-DND--Q----LPVE 156 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-Ccc--h----HHHH
Confidence 34444566667777888877764 22222 43 4447888 9999999999988876 664 0 2333
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+..++++..+|++++|++.+.++.. ....++ .. ..+...+|++.|...++
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~--~~P~~~-~a---------------------------l~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLE--VAPRHP-EV---------------------------LRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HH---------------------------HHHHHHHHHHHHhHHHH
Confidence 4458999999999999999999886 333333 11 22334444555555555
Q ss_pred hcCCCCCcccchh---hhhhHH-----HHHHHHHHHHHhhcCCcchhhhh------cccchhHHHHHHHHHHHHhcchHH
Q 000307 1234 FAIDWPPVQLEDD---EKQRAI-----KLIEMAVNSVELYSNGESLEKET------NLRSAHCFAVNHIWCMAVLNGLEC 1299 (1690)
Q Consensus 1234 f~I~W~yvqvlkd---EPdnal-----AL~smA~dYY~~~~ndEsla~~~------n~k~d~~tKLN~IRq~I~lEdse~ 1299 (1690)
..+ +.++.+. +|+..- +...+. ..... ..+....... ..+.+...-+.+.+.++...+.+.
T Consensus 207 ~~~---l~~l~k~~~~~~~~~~~l~~~a~~~l~-~~~~~-~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 207 LDI---LPSMAKAHVGDEEHRAMLEQQAWIGLM-DQAMA-DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHH---HHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHHH-hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 544 3333221 222111 111111 11111 0011111110 112223344466677777779999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000307 1300 SMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1379 (1690)
Q Consensus 1300 al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff 1379 (1690)
|..++.+.++. |.+.++.+.-+++...+ ++.++...+..++..|+++. .+..+...++..++|++|.+.+++
T Consensus 282 A~~~L~~~l~~-~~~~~l~~l~~~l~~~~-~~~al~~~e~~lk~~P~~~~----l~l~lgrl~~~~~~~~~A~~~le~-- 353 (398)
T PRK10747 282 AQQIILDGLKR-QYDERLVLLIPRLKTNN-PEQLEKVLRQQIKQHGDTPL----LWSTLGQLLMKHGEWQEASLAFRA-- 353 (398)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHH--
Confidence 99999999995 55778866666666655 77889999999999999999 999999999999999999988855
Q ss_pred HHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1380 HSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1380 ~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
++. ..+ | +..+..|+.++-+ .|+.++|...|.++|....
T Consensus 354 ------------al~--------~~P--------~---------~~~~~~La~~~~~--~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 354 ------------ALK--------QRP--------D---------AYDYAWLADALDR--LHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred ------------HHh--------cCC--------C---------HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhhc
Confidence 111 111 1 0122689999999 9999999999999997653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-06 Score=93.61 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
+.-|.||+.||++ |++.+|..-|..||++||++.-+|..++.||...+..+.++++|++|+.++|+|=. .+
T Consensus 36 ~arlqLal~YL~~-----gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQ-----GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 6779999999999 88999999999999999999999999999999999999999999999999999877 33
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhc--CCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASA--SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~--~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
|+.-.++ .|+.|.+.|++.... + +.. -|++.-+.-|-.++|..+.|-..+.|=+. ++-..
T Consensus 111 ~FLC~qg--------~~~eA~q~F~~Al~~P~Y-~~~-------s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~ 172 (250)
T COG3063 111 AFLCAQG--------RPEEAMQQFERALADPAY-GEP-------SDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQF 172 (250)
T ss_pred HHHHhCC--------ChHHHHHHHHHHHhCCCC-CCc-------chhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCC
Confidence 3334455 588888888665442 2 334 78899999999999999999887777664 33344
Q ss_pred cccccHHHHHHHhccCC
Q 000307 1186 RHSLFLSDILTCLTISD 1202 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sD 1202 (1690)
+ ...++..+.+...+|
T Consensus 173 ~-~~~l~~a~~~~~~~~ 188 (250)
T COG3063 173 P-PALLELARLHYKAGD 188 (250)
T ss_pred C-hHHHHHHHHHHhccc
Confidence 3 334444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.2e-06 Score=88.76 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhC--------CCCchHHHHHHHHHhcC
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI---LWITYLLIFYSN--------TNSVGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAe---aWyeyl~lY~~~--------~~~~ea~emfekAVela 1100 (1690)
+.|+.+|..++.. +++++|+..|.++++.+|+++. +||.++.+|+.. +...++...|.++++..
T Consensus 71 ~a~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKS-----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 6788888877766 7899999999999999998887 799999999876 56778999999999999
Q ss_pred CCCH---------------------HHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000307 1101 EGSY---------------------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1159 (1690)
Q Consensus 1101 P~NY---------------------~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL 1159 (1690)
|++- .++.+|+..+ .|.+|+..|.+....+ |+. ....+.++.+..+
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~-p~~----~~~~~a~~~l~~~ 212 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENY-PDT----PATEEALARLVEA 212 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHC-CCC----cchHHHHHHHHHH
Confidence 9983 2466788888 8999999999988876 432 3347899999999
Q ss_pred HhhhcCHHHHHHHHHhhc
Q 000307 1160 FCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1160 Y~qSGnydKAI~tL~rLE 1177 (1690)
|...|++++|+..+..|.
T Consensus 213 ~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999887776
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.2e-05 Score=87.13 Aligned_cols=262 Identities=17% Similarity=0.134 Sum_probs=186.1
Q ss_pred chHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCH
Q 000307 1087 VGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 1166 (1690)
Q Consensus 1087 ~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGny 1166 (1690)
...++-...|-++. ..|.-+..|+=++ .=|+|+..|-+++... +.. .|+=+-|..||.+-|.+
T Consensus 23 saqq~~~~qa~~ls-r~Yv~GlNfLLs~--------Q~dKAvdlF~e~l~~d-~~t-------~e~~ltLGnLfRsRGEv 85 (389)
T COG2956 23 SAQQDKQDQANRLS-RDYVKGLNFLLSN--------QPDKAVDLFLEMLQED-PET-------FEAHLTLGNLFRSRGEV 85 (389)
T ss_pred HHHhhHHHHHhhcc-HHHHhHHHHHhhc--------CcchHHHHHHHHHhcC-chh-------hHHHHHHHHHHHhcchH
Confidence 34455566666666 8899888888888 7899999999998876 777 89999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh
Q 000307 1167 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD 1246 (1690)
Q Consensus 1167 dKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd 1246 (1690)
|.||..=..|. .++ +++
T Consensus 86 DRAIRiHQ~L~------~sp-dlT-------------------------------------------------------- 102 (389)
T COG2956 86 DRAIRIHQTLL------ESP-DLT-------------------------------------------------------- 102 (389)
T ss_pred HHHHHHHHHHh------cCC-CCc--------------------------------------------------------
Confidence 99998555554 355 333
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhh-c-ccchhHHHHHHHHHHHH-hc---chHHHHHHHHHHHHhCCCcchh---
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKET-N-LRSAHCFAVNHIWCMAV-LN---GLECSMNLLEKYIKLYPSCLEL--- 1317 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~-n-~k~d~~tKLN~IRq~I~-lE---dse~al~LfdklLe~~P~d~eL--- 1317 (1690)
.-+.++|++++|-||..+..- +-++.. . .--+.+++.+-+++++. .+ +++.|++...++++..|..-.+
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~--DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLL--DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 123344555555555543111 111111 1 11225566666666665 33 9999999999999999887554
Q ss_pred ----HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccc
Q 000307 1318 ----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEIS 1393 (1690)
Q Consensus 1318 ----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deAL 1393 (1690)
+|.-.++...+ .+.|+..+.+||+.+|+.+. +=+++...++.+|++..|++..++
T Consensus 181 qfyCELAq~~~~~~~-~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~AV~~~e~---------------- 239 (389)
T COG2956 181 QFYCELAQQALASSD-VDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQKAVEALER---------------- 239 (389)
T ss_pred HHHHHHHHHHhhhhh-HHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHHHHHHHHH----------------
Confidence 44445566666 66788999999999999999 999999999999999999998866
Q ss_pred hhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000307 1394 DPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1394 D~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
+ .+-|+++++++. ..|--||++ .|+.+|...-.-+|...+++-..+.++ |=+.+.
T Consensus 240 ---------v-~eQn~~yl~evl-----------~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g~~~~l~l--~~lie~ 294 (389)
T COG2956 240 ---------V-LEQNPEYLSEVL-----------EMLYECYAQ--LGKPAEGLNFLRRAMETNTGADAELML--ADLIEL 294 (389)
T ss_pred ---------H-HHhChHHHHHHH-----------HHHHHHHHH--hCCHHHHHHHHHHHHHccCCccHHHHH--HHHHHH
Confidence 1 233455556655 667778888 888888888888888888876344333 334444
Q ss_pred cCC
Q 000307 1474 INE 1476 (1690)
Q Consensus 1474 le~ 1476 (1690)
.+|
T Consensus 295 ~~G 297 (389)
T COG2956 295 QEG 297 (389)
T ss_pred hhC
Confidence 444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=75.75 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhcCC
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~-~~~ea~emfekAVelaP 1101 (1690)
+.+.|..+|..++.. ++|+.|+..|.+||++||+++.+|+.++.+|..++ ...++..+|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-----GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 457899999999887 88999999999999999999999999999999999 68999999999999998
|
... |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.8e-06 Score=101.94 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=124.8
Q ss_pred cccccccccchhhhhhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCc
Q 000307 1008 NRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSV 1087 (1690)
Q Consensus 1008 ~~~~rYF~~~~d~in~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ 1087 (1690)
.+-..||+ +-|.-.+....+|-=|-.-|+-| |+++.|.--|++|++|||.+.++.++++.+|.++|..+
T Consensus 472 d~a~~~fr------~Al~~~~rhYnAwYGlG~vy~Kq-----ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 472 DKAMKSFR------KALGVDPRHYNAWYGLGTVYLKQ-----EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred HhHHHHHH------hhhcCCchhhHHHHhhhhheecc-----chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence 34455777 56667778889999999999887 78899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhh
Q 000307 1088 GKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1163 (1690)
Q Consensus 1088 ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qS 1163 (1690)
+|+++|++|+.++|-|-- -+..+...+ .|++|+..||++-+-- |+. .-++..|...|.+-
T Consensus 541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~--------~~~eal~~LEeLk~~v-P~e-------s~v~~llgki~k~~ 604 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPKNPLCKYHRASILFSLG--------RYVEALQELEELKELV-PQE-------SSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhc--------chHHHHHHHHHHHHhC-cch-------HHHHHHHHHHHHHH
Confidence 999999999999999854 888888999 9999999999998888 888 88999999999999
Q ss_pred cCHHHHHHH
Q 000307 1164 GNTEKAIQR 1172 (1690)
Q Consensus 1164 GnydKAI~t 1172 (1690)
|+.+.|+--
T Consensus 605 ~~~~~Al~~ 613 (638)
T KOG1126|consen 605 GNTDLALLH 613 (638)
T ss_pred ccchHHHHh
Confidence 999999873
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=81.98 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=84.4
Q ss_pred HHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHH
Q 000307 1034 CVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM 1109 (1690)
Q Consensus 1034 Wl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~m 1109 (1690)
|..+|..+.. .|+++.|+..|.+++.++|.++.+|+.++.++...+...+|.+.|++|++++|++.. ++..
T Consensus 27 ~~~~g~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQ-----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 5555555443 488999999999999999999999999999999999999999999999999999977 7889
Q ss_pred HHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1110 YINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1110 YINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
|...+ .+++|+..|....+.. |+.
T Consensus 102 l~~~g--------~~~eAi~~~~~Al~~~-p~~ 125 (144)
T PRK15359 102 LKMMG--------EPGLAREAFQTAIKMS-YAD 125 (144)
T ss_pred HHHcC--------CHHHHHHHHHHHHHhC-CCC
Confidence 99999 9999999998887776 665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=77.84 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=89.9
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1104 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY 1104 (1690)
+..|.+...=+.+|..++.. |+++.|...|.++++++|+++.+|+.++.+|+..+....+..+|++|++.+|++.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQ-----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred cCChhhHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 34445555666777777665 7899999999999999999999999999999999999999999999999999986
Q ss_pred H----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1105 A----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1105 ~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
. ++..|...+ .+++|+..|....... |+.
T Consensus 86 ~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~-p~~ 118 (135)
T TIGR02552 86 RPYFHAAECLLALG--------EPESALKALDLAIEIC-GEN 118 (135)
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhc-ccc
Confidence 6 788999999 9999999998877776 654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.2e-05 Score=97.25 Aligned_cols=274 Identities=11% Similarity=0.036 Sum_probs=181.5
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
++|.|+. |...|+..+ .|++|++..+.+.+.+ |+. +.+++++.-||.+.+++++|..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~--------~~deai~i~~~~l~~~-P~~-------i~~yy~~G~l~~q~~~~~~~~lv-- 87 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSEN--------LTDEAKDICEEHLKEH-KKS-------ISALYISGILSLSRRPLNDSNLL-- 87 (906)
T ss_pred CCcchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhC-Ccc-------eehHHHHHHHHHhhcchhhhhhh--
Confidence 5566666 778888888 9999999998888887 998 89999999999999999999775
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccchh-HHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHH
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFW-VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1253 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~Aw-Lc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalA 1253 (1690)
++.. +-..+.+. .+..|+.. |+.. .-..| .+ .-+|..|...|..++++.+ |.++++-+|+|+.+
T Consensus 88 ~~l~--~~~~~~~~----~~ve~~~~---~i~~~~~~k~--Al-~~LA~~Ydk~g~~~ka~~~---yer~L~~D~~n~~a 152 (906)
T PRK14720 88 NLID--SFSQNLKW----AIVEHICD---KILLYGENKL--AL-RTLAEAYAKLNENKKLKGV---WERLVKADRDNPEI 152 (906)
T ss_pred hhhh--hcccccch----hHHHHHHH---HHHhhhhhhH--HH-HHHHHHHHHcCChHHHHHH---HHHHHhcCcccHHH
Confidence 4443 22222211 22223221 1110 00001 11 1368889999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCcc
Q 000307 1254 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLS 1333 (1690)
Q Consensus 1254 L~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~A 1333 (1690)
|=-+| .+|+. . +.+.|+.|..++++. |+..++ ..+.
T Consensus 153 LNn~A-Y~~ae-~-----------------------------dL~KA~~m~~KAV~~------------~i~~kq-~~~~ 188 (906)
T PRK14720 153 VKKLA-TSYEE-E-----------------------------DKEKAITYLKKAIYR------------FIKKKQ-YVGI 188 (906)
T ss_pred HHHHH-HHHHH-h-----------------------------hHHHHHHHHHHHHHH------------HHhhhc-chHH
Confidence 99997 55553 0 345666666666665 565555 6667
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCc
Q 000307 1334 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1413 (1690)
Q Consensus 1334 i~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vS 1413 (1690)
..+|++++..+|++.. .+.++++-....-+...++.++.+-|..+-. .+..++++.+|+....+-+ .
T Consensus 189 ~e~W~k~~~~~~~d~d----~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~--------~ 255 (906)
T PRK14720 189 EEIWSKLVHYNSDDFD----FFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDN--------K 255 (906)
T ss_pred HHHHHHHHhcCcccch----HHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCC--------c
Confidence 7888888888888888 8888888777776677777776663332211 1256678888876554432 2
Q ss_pred ccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc----CCcHHHHHHHHHHHHhcCC
Q 000307 1414 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVREHAMLLLINE 1476 (1690)
Q Consensus 1414 Dfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np----~N~~i~cLNNYAYFLSle~ 1476 (1690)
+++ +.-+++.+- .+.+.+ ..-++.+|+..- ...|..|+.+|--++++..
T Consensus 256 n~~-----------a~~~l~~~y--~~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~ 308 (906)
T PRK14720 256 NNK-----------AREELIRFY--KEKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDT 308 (906)
T ss_pred chh-----------hHHHHHHHH--HHHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHeeecC
Confidence 555 444543333 333333 556666665543 1346788888877776643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=90.71 Aligned_cols=306 Identities=20% Similarity=0.109 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhcccc-Cc---hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1032 EQCVEMALLILNQDA-NK---LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~-n~---~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
++.+-.||.-..-.+ ++ .....+++..|.+|++.+|+++-+.|+++.-|.-+.+-..|.+.++.|.++++..-.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~ 515 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKA 515 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHH
Confidence 666777766665555 44 344789999999999999999999999999999999999999999999999766665
Q ss_pred ---HHHHHHhcCCCcccchHHHHHHHHHHHH---------hhh-cCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000307 1106 ---LWLMYINSRTPLNHRLDAYDAALSVLCR---------CAS-ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1172 (1690)
Q Consensus 1106 ---Lw~mYINsr~s~ddrl~aYdrAI~aLe~---------las-~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~t 1172 (1690)
|+.+.--++ ++.+.+..-+.|++-+.. +.+ .+ .|+ -..+|+...++.|.-..--++.++.
T Consensus 516 whLLALvlSa~k-r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~-~~~----e~~l~t~~~~L~~we~~~~~q~~~~- 588 (799)
T KOG4162|consen 516 WHLLALVLSAQK-RLKEALDVVDAALEEFGDNHVLMDGKIHIELTF-NDR----EEALDTCIHKLALWEAEYGVQQTLD- 588 (799)
T ss_pred HHHHHHHHhhhh-hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc-ccH----HHHHHHHHHHHHHHHhhhhHhhhhh-
Confidence 444444555 556666666666655533 000 11 222 1347777777777765544444433
Q ss_pred HHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH---HHhhccccHHHHhhccchhhh---hcCCCCCcccchh
Q 000307 1173 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY---LVIYRKLPDAVLQLLECEKEL---FAIDWPPVQLEDD 1246 (1690)
Q Consensus 1173 L~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY---dl~YrvLPGd~y~qne~~KEA---f~I~W~yvqvlkd 1246 (1690)
+ |.-++ .|-...++.++...+-=.+.| ++. -++. +.+..... -.++||-.--...
T Consensus 589 --~-------g~~~~----lk~~l~la~~q~~~a~s~sr~ls~l~a---~~~~---~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 589 --E-------GKLLR----LKAGLHLALSQPTDAISTSRYLSSLVA---SQLK---SAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred --h-------hhhhh----hhcccccCcccccccchhhHHHHHHHH---hhhh---hcccccccCcccccCCCCchHHHH
Confidence 1 11111 122345566666555333333 222 1111 11111111 1133332211111
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhh--cccch-hHHHHHHHHHHH--HhcchHHHHHHHHHHHHhCCCcchh--HH
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKET--NLRSA-HCFAVNHIWCMA--VLNGLECSMNLLEKYIKLYPSCLEL--VL 1319 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~--n~k~d-~~tKLN~IRq~I--~lEdse~al~LfdklLe~~P~d~eL--~L 1319 (1690)
..+-.+|++++..+-+++..-.-. -.++. -+--+-.++... ...-.++|...|...+.+.|.++.. .|
T Consensus 650 -----~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 650 -----QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred -----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 333345566666534433321000 01111 111111122111 1337889999999999999999999 55
Q ss_pred HHHHHhhccCCCccHH--HHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1320 MKARLQKHDFGDLSSV--GFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1320 ~AayL~~k~m~e~Ai~--vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
...+++... +.-+.. ++..++.++|.|.. +|++|...+-..|+.+.|.+
T Consensus 725 a~~lle~G~-~~la~~~~~L~dalr~dp~n~e----aW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 725 AELLLELGS-PRLAEKRSLLSDALRLDPLNHE----AWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHhCC-cchHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccchHHHHH
Confidence 555565554 555555 89999999999999 99999999999999997654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0005 Score=78.05 Aligned_cols=127 Identities=16% Similarity=0.064 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT---YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWye---yl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
.+.+.-.|+..... |+++.|+.++.++|+.+|++..+|.. +.......+....+...++.+....|...+
T Consensus 43 ~e~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 43 RERAHVEALSAWIA-----GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence 35555555555444 67889999999999999999988874 222222233333344444444466666655
Q ss_pred --HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1106 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 --Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++..|...+ .|++|+..+++..... |+. ......+.++|.+.|++++|+..+.+...
T Consensus 118 ~~~a~~~~~~G--------~~~~A~~~~~~al~~~-p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 118 GMLAFGLEEAG--------QYDRAEEAARRALELN-PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHhhC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 566888888 8999999999988887 666 66788899999999999999998877664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00083 Score=83.56 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
++|.+.|.+.+.-|+-.|+-.+-+-.-+.....++...+|.++++.|+..++.++. ++.+|-+-+ .|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--------~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--------KYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--------hHH
Confidence 67899999999999999999999999999999999999999999999999999998 777788888 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+||..|-+.-.-. +|+ +.++--|.-|-.|-|+|+-...+-+++++
T Consensus 93 eaiKcy~nAl~~~-~dN-------~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDN-------LQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999996666665 999 99999999999999999999999999997
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.8e-05 Score=65.63 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHH
Q 000307 1033 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1108 (1690)
Q Consensus 1033 lWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~ 1108 (1690)
.|..+|..++.+ |+++.|+.+|.++++.+|.+..+|+.++.+|...+....+.++|+++++..|.+.. ++.
T Consensus 2 ~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKL-----GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHH-----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 467777777664 78999999999999999999999999999999999999999999999999998865 678
Q ss_pred HHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1109 MYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1109 mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
+|...+ .+++|+..+.......
T Consensus 77 ~~~~~~--------~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLG--------KYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHH--------hHHHHHHHHHHHHccC
Confidence 888888 8999999887665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=89.27 Aligned_cols=262 Identities=13% Similarity=0.076 Sum_probs=207.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--------HHHHHHhcCCCcccc
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHR 1120 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--------Lw~mYINsr~s~ddr 1120 (1690)
.-+..+|+.+|.+--+..++..=+...++..|..+....++...|+.+=+..|.--. ||-+
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL----------- 400 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL----------- 400 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-----------
Confidence 366799999999988899999988889999999999999999999999998863221 5543
Q ss_pred hHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhcc
Q 000307 1121 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTI 1200 (1690)
Q Consensus 1121 l~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~ 1200 (1690)
.=+-++.+|++-.-..+|+. -+.--.+..||-.|++++.||..+.|=.| .+|+
T Consensus 401 --q~~v~Ls~Laq~Li~~~~~s-------PesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~------------- 453 (638)
T KOG1126|consen 401 --QDEVALSYLAQDLIDTDPNS-------PESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPR------------- 453 (638)
T ss_pred --HhhHHHHHHHHHHHhhCCCC-------cHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCc-------------
Confidence 22557888887666666887 66666789999999999999998887776 5663
Q ss_pred CCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccch
Q 000307 1201 SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1280 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d 1280 (1690)
.+|.| +|+|.=+-..+....|-.. |...+.-+|+.=-|.+.+++-|+++ .
T Consensus 454 -------faYay-----TLlGhE~~~~ee~d~a~~~---fr~Al~~~~rhYnAwYGlG~vy~Kq--e------------- 503 (638)
T KOG1126|consen 454 -------FAYAY-----TLLGHESIATEEFDKAMKS---FRKALGVDPRHYNAWYGLGTVYLKQ--E------------- 503 (638)
T ss_pred -------cchhh-----hhcCChhhhhHHHHhHHHH---HHhhhcCCchhhHHHHhhhhheecc--c-------------
Confidence 22333 3455556666777777777 8888889999988888888777763 1
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHH
Q 000307 1281 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYV 1359 (1690)
Q Consensus 1281 ~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLi 1359 (1690)
..+.|.--|.++++.+|.+..| ..++..+...+..+.|+..|++|+-++|+|.- .+++-+
T Consensus 504 ---------------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~ 564 (638)
T KOG1126|consen 504 ---------------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRA 564 (638)
T ss_pred ---------------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHH
Confidence 2345556899999999999999 66777777777799999999999999999999 788889
Q ss_pred HHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhc
Q 000307 1360 EYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLV 1397 (1690)
Q Consensus 1360 q~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr 1397 (1690)
......+++++|...+++ |..|--|.+. ..+-|+-.|.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 999999999999999988 5555555554 7777777665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0086 Score=72.97 Aligned_cols=466 Identities=16% Similarity=0.166 Sum_probs=296.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcC---CCcccchHHHHHHHHHHHHh
Q 000307 1058 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSR---TPLNHRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1058 LLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr---~s~ddrl~aYdrAI~aLe~l 1134 (1690)
-|.-.|.-|..+-..|.-|++.--.++.-.-|...|++|+.-+-.|-.||+-|+..+ ..+...--.+|+|++.|
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--- 137 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--- 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---
Confidence 345567778888999999999988888888999999999999988888999999866 34555556778888877
Q ss_pred hhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH-H
Q 000307 1135 ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-L 1213 (1690)
Q Consensus 1135 as~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-d 1213 (1690)
|-- .-+-+.-+.+--+-||+.-|-+.+.|-.. -+ -...||+|++- +
T Consensus 138 -----PRV-------dqlWyKY~ymEE~LgNi~gaRqiferW~~-----w~----------------P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 138 -----PRV-------DQLWYKYIYMEEMLGNIAGARQIFERWME-----WE----------------PDEQAWLSFIKFE 184 (677)
T ss_pred -----chH-------HHHHHHHHHHHHHhcccHHHHHHHHHHHc-----CC----------------CcHHHHHHHHHHH
Confidence 332 44556677778888999988886655442 22 34578999996 8
Q ss_pred HhhccccHH--HHhhcc---chhhhhcCCCCCccc--chhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHH
Q 000307 1214 VIYRKLPDA--VLQLLE---CEKELFAIDWPPVQL--EDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1286 (1690)
Q Consensus 1214 l~YrvLPGd--~y~qne---~~KEAf~I~W~yvqv--lkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN 1286 (1690)
++|.-.-+. +|..+= -+-..+-- |.+- .-..-.++..+++.|+++.. ++..+.- +=+.
T Consensus 185 lRykeieraR~IYerfV~~HP~v~~wik---yarFE~k~g~~~~aR~VyerAie~~~----~d~~~e~--------lfva 249 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVHPKVSNWIK---YARFEEKHGNVALARSVYERAIEFLG----DDEEAEI--------LFVA 249 (677)
T ss_pred HHhhHHHHHHHHHHHHheecccHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHhh----hHHHHHH--------HHHH
Confidence 888754331 222111 00001100 1111 11244566777777776664 2221111 1111
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHh--hccCCCcc----H-----HHHHHHHHhCCCCCchhHHHH
Q 000307 1287 HIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ--KHDFGDLS----S-----VGFEEALIKWPKGVPGIQCIW 1355 (1690)
Q Consensus 1287 ~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~--~k~m~e~A----i-----~vfe~aL~~~PkNa~g~qcaW 1355 (1690)
+-.+-......+.|.-+|.=+|..-|.+-.-.|+..|+. ++-+...+ + ..|+..++.+|-|.- .|
T Consensus 250 FA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD----sW 325 (677)
T KOG1915|consen 250 FAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD----SW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch----HH
Confidence 111111122788899999999999999988888888753 33322233 2 579999999999999 99
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHH
Q 000307 1356 NQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLH 1435 (1690)
Q Consensus 1356 ~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Ly 1435 (1690)
.-|+...=..|+-+.|.++-++ |+. -+++-+....- --| ++-+|+-+||
T Consensus 326 fdylrL~e~~g~~~~Ire~yEr--------------AIa-------nvpp~~ekr~W-~RY---------IYLWinYaly 374 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYER--------------AIA-------NVPPASEKRYW-RRY---------IYLWINYALY 374 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHH--------------HHc-------cCCchhHHHHH-HHH---------HHHHHHHHHH
Confidence 9999988888888888877655 211 12221111100 012 2255555655
Q ss_pred H-hhhcChHHHHHHHHHHHhhccC--CcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccc-cchh
Q 000307 1436 R-LLQNDWNEARLAIDAALKAAAS--EHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKL-LPRQ 1511 (1690)
Q Consensus 1436 q-~Lqg~~~EAf~AYDkALk~np~--N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDTAWILf~~~~-lARi 1511 (1690)
. +.-.+.+-+...|..||+.-|- =.|--.|-=||.|.- ...+|.+|-++=. +.| -.| .+. +=|.
T Consensus 375 eEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG--~AI----G~c-----PK~KlFk~ 442 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILG--NAI----GKC-----PKDKLFKG 442 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHH--HHh----ccC-----CchhHHHH
Confidence 4 5567888899999999999993 457788999999975 3445666554222 111 000 111 3355
Q ss_pred hhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccC
Q 000307 1512 FINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDH 1591 (1690)
Q Consensus 1512 YI~~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~ 1591 (1690)
|| +++..|.-... -...-|+++|.-|.|-.-=+..+-|...-
T Consensus 443 YI------------------------elElqL~efDR-------------cRkLYEkfle~~Pe~c~~W~kyaElE~~L- 484 (677)
T KOG1915|consen 443 YI------------------------ELELQLREFDR-------------CRKLYEKFLEFSPENCYAWSKYAELETSL- 484 (677)
T ss_pred HH------------------------HHHHHHhhHHH-------------HHHHHHHHHhcChHhhHHHHHHHHHHHHh-
Confidence 66 23333332210 12356777888888877666555544321
Q ss_pred CCCCCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000307 1592 NPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1671 (1690)
Q Consensus 1592 ~~~~~d~~s~~~~fwA~s~l~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~ 1671 (1690)
+-.+- |..+.-=||.+-.--.||-+|.--+++.=.....+.- +-+|++-|.--+.+- .|-.+-+|+.+
T Consensus 485 ------gdtdR----aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka-R~LYerlL~rt~h~k-vWisFA~fe~s 552 (677)
T KOG1915|consen 485 ------GDTDR----ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA-RALYERLLDRTQHVK-VWISFAKFEAS 552 (677)
T ss_pred ------hhHHH----HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH-HHHHHHHHHhcccch-HHHhHHHHhcc
Confidence 11111 2222223444434457999999999998888876665 999999988877765 99999999983
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00097 Score=75.74 Aligned_cols=273 Identities=12% Similarity=-0.073 Sum_probs=158.1
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADP---TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1104 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINP---tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY 1104 (1690)
|.....|+-+|..++... +.+.|...+.+.+..+| +..+.++..+.++...+..+++.+.++++++.+|++.
T Consensus 3 p~~~~a~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 3 PDFALGHAAAALLLLLGG-----ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CccHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 444566777776666553 23344445555555555 6678899999999999999999999999999999988
Q ss_pred HHHH---HHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccccc
Q 000307 1105 ALWL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1181 (1690)
Q Consensus 1105 ~Lw~---mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al 1181 (1690)
..+. .|.... .+.++... +..++......+ ++. ...+..+..+|...|+++.|+..+.+...
T Consensus 78 ~a~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~-~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 142 (355)
T cd05804 78 LALKLHLGAFGLG-DFSGMRDH---VARVLPLWAPEN-PDY-------WYLLGMLAFGLEEAGQYDRAEEAARRALE--- 142 (355)
T ss_pred HHHHHhHHHHHhc-ccccCchh---HHHHHhccCcCC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 7554 344333 12344433 444443322333 555 67778888999999999999998887775
Q ss_pred CCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHH
Q 000307 1182 GSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNS 1261 (1690)
Q Consensus 1182 ~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dY 1261 (1690)
..+.. .....+++.+|...|..+|+... +.+.++..|......+
T Consensus 143 --~~p~~-------------------------~~~~~~la~i~~~~g~~~eA~~~---l~~~l~~~~~~~~~~~------ 186 (355)
T cd05804 143 --LNPDD-------------------------AWAVHAVAHVLEMQGRFKEGIAF---MESWRDTWDCSSMLRG------ 186 (355)
T ss_pred --hCCCC-------------------------cHHHHHHHHHHHHcCCHHHHHHH---HHhhhhccCCCcchhH------
Confidence 33321 12234568888888888888887 6666665553111000
Q ss_pred HHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-H-----HHHHHHhhccCCCccHH
Q 000307 1262 VELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-V-----LMKARLQKHDFGDLSSV 1335 (1690)
Q Consensus 1262 Y~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~-----L~AayL~~k~m~e~Ai~ 1335 (1690)
..-..+-++++...+.+.|+.++++++...|....+ . ....++...+ ......
T Consensus 187 --------------------~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~ 245 (355)
T cd05804 187 --------------------HNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGD 245 (355)
T ss_pred --------------------HHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHH
Confidence 000111223333446677777777776665532222 1 2222233333 223334
Q ss_pred HHHHHHHhCCCCC--chhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1336 GFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1336 vfe~aL~~~PkNa--~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
-|+.+....+... +.....+.-.+..++..++.+.|..++.+
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4444433321110 22233333445556666667766666655
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.8e-05 Score=94.73 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=108.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|.|+.|..+|.+|++..|+.+.++..++.+-.+++.-++|.+-+++|++.+|+|.. ++-..+..+ .
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g--------~ 169 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG--------Q 169 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--------c
Confidence 4688999999999999999999999999999999999999999999999999999999 888889999 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|++|+.+|+++.+.+ |+. -+.++.+.+++.-.|+.+.|...+.+-..
T Consensus 170 ~~~A~~~y~~~~~~~-p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 170 SEQADACFERLSRQH-PEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hHHHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999977 888 89999999999999999999998877765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6e-05 Score=88.52 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aY 1124 (1690)
.|+|+.|+.+|.+||+.+|+++.+|+.++.+|..++...+|...|++|++++|++.. ++..|...+ .|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg--------~~ 86 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE--------EY 86 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC--------CH
Confidence 478999999999999999999999999999999999999999999999999998766 888999999 99
Q ss_pred HHHHHHHHHhhhcCCCCc
Q 000307 1125 DAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr 1142 (1690)
++|+..|++..... |+.
T Consensus 87 ~eA~~~~~~al~l~-P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLA-PGD 103 (356)
T ss_pred HHHHHHHHHHHHhC-CCC
Confidence 99999999988877 665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=85.74 Aligned_cols=315 Identities=16% Similarity=0.098 Sum_probs=191.8
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
|...++-..-|-.||. .|+-.+|+.=|+|-|+.-|+=..+-..-+.+..++++-+.|.+-|.+-++++|.|-.
T Consensus 69 p~~Y~aifrRaT~yLA-----mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ 143 (504)
T KOG0624|consen 69 PNNYQAIFRRATVYLA-----MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL 143 (504)
T ss_pred chhHHHHHHHHHHHhh-----hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence 3344555555555554 466688999999999999999999999999999999999999999999999996644
Q ss_pred -----H------------HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHH
Q 000307 1106 -----L------------WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEK 1168 (1690)
Q Consensus 1106 -----L------------w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydK 1168 (1690)
| ..-|+.++ .|..||++.-.+.+-. .|-..+..+++.||..-|...+
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHH
Confidence 1 12345566 7888888876665544 2335678889999999999999
Q ss_pred HHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhc-cchhhhhcCCCCCcccchhh
Q 000307 1169 AIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDE 1247 (1690)
Q Consensus 1169 AI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qn-e~~KEAf~I~W~yvqvlkdE 1247 (1690)
||+-+...-. +..+|- ......-.++.|++|-... |..+-+ ++.+ -.-|..|.. |.++.|..
T Consensus 208 AI~Dlk~ask--Ls~DnT-e~~ykis~L~Y~vgd~~~s-L~~iRE----------CLKldpdHK~Cf~~---YKklkKv~ 270 (504)
T KOG0624|consen 208 AIHDLKQASK--LSQDNT-EGHYKISQLLYTVGDAENS-LKEIRE----------CLKLDPDHKLCFPF---YKKLKKVV 270 (504)
T ss_pred HHHHHHHHHh--ccccch-HHHHHHHHHHHhhhhHHHH-HHHHHH----------HHccCcchhhHHHH---HHHHHHHH
Confidence 9987643322 333442 2222333344455543322 000000 0000 011222332 33333222
Q ss_pred hh--hHHHHHHHHHHHHHhh-cCCcchhhhhcccchhHHHHHHH----HHHHHhcchHHHHHHHHHHHHhCCCcchh--H
Q 000307 1248 KQ--RAIKLIEMAVNSVELY-SNGESLEKETNLRSAHCFAVNHI----WCMAVLNGLECSMNLLEKYIKLYPSCLEL--V 1318 (1690)
Q Consensus 1248 Pd--nalAL~smA~dYY~~~-~ndEsla~~~n~k~d~~tKLN~I----Rq~I~lEdse~al~LfdklLe~~P~d~eL--~ 1318 (1690)
+. ++-+.++.. ++-.-- +|+.-+.. .-......+|.. +|+-.-+..-+|+.-|..+|+..|+|+++ -
T Consensus 271 K~les~e~~ie~~-~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 271 KSLESAEQAIEEK-HWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHH
Confidence 21 111222211 111000 11111111 111112222222 23333347788999999999999999999 4
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-----HHHHHhhhcc-ccccc
Q 000307 1319 LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----WFHSVWKVQY-SQVEI 1392 (1690)
Q Consensus 1319 L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-----ff~gia~~Q~-~~deA 1392 (1690)
=.-||| ...|-++|+.-|+.|++.+|+|.. ++ ++.+.|.++-+. ||.=++--.. +-.|.
T Consensus 347 RAeA~l-~dE~YD~AI~dye~A~e~n~sn~~----~r----------eGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI 411 (504)
T KOG0624|consen 347 RAEAYL-GDEMYDDAIHDYEKALELNESNTR----AR----------EGLERAKRLKKQSGKRDYYKILGVKRNASKQEI 411 (504)
T ss_pred HHHHHh-hhHHHHHHHHHHHHHHhcCcccHH----HH----------HHHHHHHHHHHHhccchHHHHhhhcccccHHHH
Confidence 445555 455689999999999999999998 55 477888888776 7766554444 66667
Q ss_pred chhhccc
Q 000307 1393 SDPLVAD 1399 (1690)
Q Consensus 1393 LD~lr~g 1399 (1690)
..++|+.
T Consensus 412 ~KAYRKl 418 (504)
T KOG0624|consen 412 TKAYRKL 418 (504)
T ss_pred HHHHHHH
Confidence 7777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.02 Score=71.77 Aligned_cols=579 Identities=14% Similarity=0.170 Sum_probs=309.3
Q ss_pred hhhchhhhHHHHHHHHHHhccccC---chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC
Q 000307 1024 LKQVELSNEQCVEMALLILNQDAN---KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~n---~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVela 1100 (1690)
|.+=|-+.-+|-.+--.+..+-.+ ...-|..-=+.|.|||-.=-.=+-+|..|+++-+.++.-...+-.|-.|..-=
T Consensus 53 l~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL 132 (835)
T KOG2047|consen 53 LKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRAL 132 (835)
T ss_pred HHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 344456667886665444444321 12334444455666666666778999999999999999998899999999888
Q ss_pred CCCHH--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1101 EGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1101 P~NY~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|---. +|-+||..-++...- +.++.+|.+-..-. |.- +.|.+ ..++.+++.+.|-++|..+..
T Consensus 133 pvtqH~rIW~lyl~Fv~~~~lP----ets~rvyrRYLk~~-P~~------~eeyi----e~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFVESHGLP----ETSIRVYRRYLKVA-PEA------REEYI----EYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred chHhhccchHHHHHHHHhCCCh----HHHHHHHHHHHhcC-HHH------HHHHH----HHHHhccchHHHHHHHHHhcC
Confidence 76555 999999865444332 68888887766655 321 25544 455778999999998888875
Q ss_pred ----cccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccc--------------cHHHHhhccc-------hhhh
Q 000307 1179 ----PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKL--------------PDAVLQLLEC-------EKEL 1233 (1690)
Q Consensus 1179 ----~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvL--------------PGd~y~qne~-------~KEA 1233 (1690)
....|++.+++.+. +-.++...-+++..| .++-+.|.. +++.|...|. .+|+
T Consensus 198 ~d~f~sk~gkSn~qlw~e-lcdlis~~p~~~~sl--nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLE-LCDLISQNPDKVQSL--NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred chhhhhhcccchhhHHHH-HHHHHHhCcchhccc--CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22334444333322 112233333332211 112222322 3344444443 3344
Q ss_pred hcCCCCCcccch-hhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhc-chHHHHHHHHHHHHhC
Q 000307 1234 FAIDWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN-GLECSMNLLEKYIKLY 1311 (1690)
Q Consensus 1234 f~I~W~yvqvlk-dEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lE-dse~al~LfdklLe~~ 1311 (1690)
+.- ...+.. +--=++|++|+-..-.-..-+.++.-. +.+.+.++-+-|-|+--+.+ +..- |=+-+|.++
T Consensus 275 i~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~---n~ed~~dl~~~~a~~e~lm~rr~~~---lNsVlLRQn 345 (835)
T KOG2047|consen 275 IQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESG---NEEDDVDLELHMARFESLMNRRPLL---LNSVLLRQN 345 (835)
T ss_pred HHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc---ChhhhhhHHHHHHHHHHHHhccchH---HHHHHHhcC
Confidence 332 111100 011134455544211111100011100 12222222221111111111 1111 224566778
Q ss_pred CCcchhHHHHHHHhhccCCCccHHHHHHHH-HhCCCCCc-hhHHHHHHHHHHHHhcCChhHHHHHHHH-------H----
Q 000307 1312 PSCLELVLMKARLQKHDFGDLSSVGFEEAL-IKWPKGVP-GIQCIWNQYVEYALQNGRHDFAAELMDR-------W---- 1378 (1690)
Q Consensus 1312 P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL-~~~PkNa~-g~qcaW~QLiq~Al~~e~~d~ai~L~~~-------f---- 1378 (1690)
|.+++=.+.-.-+...+ +.+-+.+|.+|+ ..+|+-++ ...-+|--++...+..++.+.|..|.+. +
T Consensus 346 ~~nV~eW~kRV~l~e~~-~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 346 PHNVEEWHKRVKLYEGN-AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred CccHHHHHhhhhhhcCC-hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 88888877777777776 667778887775 57899988 4677899999999999999999999988 2
Q ss_pred ---HHHHhhhc---ccccccchhhcccC-CCCCCCCCCCCCcccccccccchhh-----hhHHHHHHHHHhhhcChHHHH
Q 000307 1379 ---FHSVWKVQ---YSQVEISDPLVADM-SHSSPESTSTSDPEFSVSNRNQMDV-----MFGYLNLSLHRLLQNDWNEAR 1446 (1690)
Q Consensus 1379 ---f~gia~~Q---~~~deALD~lr~g~-s~i~~es~s~~vSDfy~~~~~Q~d~-----~fa~LGD~Lyq~Lqg~~~EAf 1446 (1690)
+..+|..- +..+.|+.++++.. .|.+.. ...|=.+-+-|+=+ +.++.-|..-. -|-.+...
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs--~gtfestk 497 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQARLHRSLKIWSMYADLEES--LGTFESTK 497 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHHHHHHhHHHHHHHHHHHHH--hccHHHHH
Confidence 22222222 27888999888773 232211 22222222334311 12222332222 35566677
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------------HHHHhhhcccccccccchhhhc
Q 000307 1447 LAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------------NSYLDRARSLPYLKLLPRQFIN 1514 (1690)
Q Consensus 1447 ~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV------------sTYLDTAWILf~~~~lARiYI~ 1514 (1690)
++||+.|...--- =+...|||+||-.+.- ...+.++=. |.| .|||-. -.+ +|=
T Consensus 498 ~vYdriidLriaT--Pqii~NyAmfLEeh~y-feesFk~YE--rgI~LFk~p~v~diW~tYLtk--------fi~-ryg- 562 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT--PQIIINYAMFLEEHKY-FEESFKAYE--RGISLFKWPNVYDIWNTYLTK--------FIK-RYG- 562 (835)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHhhHH-HHHHHHHHH--cCCccCCCccHHHHHHHHHHH--------HHH-Hhc-
Confidence 9999999776644 4678899999865431 222222111 222 444432 111 221
Q ss_pred cccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCC
Q 000307 1515 NIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPN 1594 (1690)
Q Consensus 1515 ~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~ 1594 (1690)
+-|=-|.|.|.+|||..-+ ...-|.+-.-| +-|..++++-|.--.+.|+....|+.--+|.+ .....+.
T Consensus 563 g~klEraRdLFEqaL~~Cp---p~~aKtiyLlY--A~lEEe~GLar~amsiyerat~~v~~a~~l~m--yni~I~k---- 631 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCP---PEHAKTIYLLY--AKLEEEHGLARHAMSIYERATSAVKEAQRLDM--YNIYIKK---- 631 (835)
T ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHH----
Confidence 3344577888888887633 22222221111 01233333333334555555555554444433 2211111
Q ss_pred CCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHH---------HhhhccccchH------
Q 000307 1595 ITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFF---------KRALSVYPFSI------ 1659 (1690)
Q Consensus 1595 ~~d~~s~~~~fwA~s~l~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy---------~~AlsvyPfS~------ 1659 (1690)
+-.|+ .+| .+--|.=+|+..|.+-+. ++.|-||- .||=-.|-+|.
T Consensus 632 -----------------aae~y-Gv~-~TR~iYekaIe~Lp~~~~-r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 632 -----------------AAEIY-GVP-RTREIYEKAIESLPDSKA-REMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred -----------------HHHHh-CCc-ccHHHHHHHHHhCChHHH-HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 11111 122 344566677777766655 33335553 34555555554
Q ss_pred ---HHHHHHHhhhcccCChHHHHHHHH
Q 000307 1660 ---KLWKCYYDLSKTKGDLNTIVKAAR 1683 (1690)
Q Consensus 1660 ---~LW~~y~~~~k~~g~~~~ive~ar 1683 (1690)
.+|...=.|+..+||-+++-|--|
T Consensus 692 ~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 692 VTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 689999999999999866655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00029 Score=82.30 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhcCCCCHHHHH----HHHhcCCCcccchHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-~~ea~emfekAVelaP~NY~Lw~----mYINsr~s~ddrl~aY 1124 (1690)
+.++.||.++..+|++||.+..+|.....++..++. -.++.+.+.+|++.+|.||++|. ++...+ ...+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~------~~~~ 124 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG------PDAA 124 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC------chhh
Confidence 456788888888888888888888888888887764 36788888888888888888664 333333 1234
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++++.++..+.+.+ |.+ -.+..++.-++...|+|++||+..+++..
T Consensus 125 ~~el~~~~kal~~d-pkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 125 NKELEFTRKILSLD-AKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67788777777776 777 77778888888888888888888887765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=81.42 Aligned_cols=317 Identities=13% Similarity=0.163 Sum_probs=195.9
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC-CHH----HHHHHHhcCCCcccch
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA----LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~-NY~----Lw~mYINsr~s~ddrl 1121 (1690)
...|+||+||++|+|-++.+-..-+.-.....+=. ..-..++ ..++|...|. +|. .+..||+.+
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~g------- 189 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQVQ--LLQSVPEVPEDSYELLYNTACILIENG------- 189 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcc-------
Confidence 45699999999999999999998777766655511 1112222 6677777776 666 889999999
Q ss_pred HHHHHHHHHHHHh----hhc-CCCCc--chhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc----------------
Q 000307 1122 DAYDAALSVLCRC----ASA-SDGDE--MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI---------------- 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~l----as~-~~pDr--~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq---------------- 1178 (1690)
.|+.||+.|+.. -+. .+.|. ++-=..|-=+-+||+..|.+.|+.++|.+.+..+..
T Consensus 190 -ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 190 -KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred -cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999554 011 11232 111223334557888999999999999997777765
Q ss_pred cccCCCC---cccccHHHHHHHhccCCccchhHHHHH-HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1179 PATGSND---RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1179 ~Al~G~s---E~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
+|..+++ ++++..++=..+.+..|.+.+.|...+ ..+|+. .+.+-|-.|+......+ ...+-.+-|+-.+-.
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N-~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ 344 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN-NALLALFTNKMDQVREL---SASLPGMSPESLFPI 344 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHH---HHhCCccCchHHHHH
Confidence 1122221 112223444466667777777888887 333332 23344444443333333 222222223222222
Q ss_pred HHH------------HHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHH--------HHHHhCCCc
Q 000307 1255 IEM------------AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLE--------KYIKLYPSC 1314 (1690)
Q Consensus 1255 ~sm------------A~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~Lfd--------klLe~~P~d 1314 (1690)
+-. |..+...+... .+.-+...+|-+|...|..-+.+.|+..+. .+.+..-.=
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~-------~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADG-------HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcc-------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 221 11122111111 111123445554444444447777777777 555444333
Q ss_pred chh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc---hhHHHHHHHHHHHHhcCChhHHHHHHHH---HHHHHhhhcc
Q 000307 1315 LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP---GIQCIWNQYVEYALQNGRHDFAAELMDR---WFHSVWKVQY 1387 (1690)
Q Consensus 1315 ~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~---g~qcaW~QLiq~Al~~e~~d~ai~L~~~---ff~gia~~Q~ 1387 (1690)
.-+ .+++.|...++ .+.|..++.+|+.-|-+... -+-|+|-++++.-++.|+..++..+.++ |+.....++.
T Consensus 418 ~~V~aiv~l~~~~~~-~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 418 GTVGAIVALYYKIKD-NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred hHHHHHHHHHHhccC-CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 344 77788888888 88899999999999988877 6889999999999999999999999998 5555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0004 Score=89.06 Aligned_cols=310 Identities=17% Similarity=0.128 Sum_probs=178.0
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
..|+-.-.-||+ .++.-.|..-|++||.++|.+-.+|.-++..|...+..+-+.-.|-||..++|.+.. .+
T Consensus 563 ~nW~~rG~yyLe-----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 563 ENWVQRGPYYLE-----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hhhhhccccccC-----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence 566664444444 367789999999999999999999999999999999999999999999999998866 66
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhh--hHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC--ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~--ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
-|=-..+ .|..|+..|+...... .+ .++++ +-+.++.++-.+..+|=+.||.+-+..=.+--+....
T Consensus 638 ~~ecd~G--------kYkeald~l~~ii~~~-s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 638 VMECDNG--------KYKEALDALGLIIYAF-SL--ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHHH-HH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 6666677 8999999997765544 22 35554 3677888888887777776666533211110001111
Q ss_pred cccccHHHHHHHhccCCccch--hHH----HHH-HHhhcc-ccHHHHhhccchhhhhcCCCC-CcccchhhhhhHHHHHH
Q 000307 1186 RHSLFLSDILTCLTISDKLIF--WVC----CVY-LVIYRK-LPDAVLQLLECEKELFAIDWP-PVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~A--wLc----~iY-dl~Yrv-LPGd~y~qne~~KEAf~I~W~-yvqvlkdEPdnalAL~s 1256 (1690)
+ .+ -+......-.||.|-. |+. ..| +.++-. +.+-.+ ..+.|.+-+.-. +...++-=- .++--..
T Consensus 707 h-~~-~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~---l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyN 780 (1238)
T KOG1127|consen 707 H-SL-QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA---LKKNDLLFLGYECGIAHLSLAI-HMYPWYN 780 (1238)
T ss_pred H-hh-hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc---CcchhHHHHHHHHhhHHHHHhh-ccchHHH
Confidence 1 11 2234445555666554 333 222 111111 111111 122221110000 111111000 0333344
Q ss_pred HHHHHHHhhcC-CcchhhhhcccchhHHHHHHHHHHHHhc-----------------chHHHHHHHHHHHHhCCCcchh-
Q 000307 1257 MAVNSVELYSN-GESLEKETNLRSAHCFAVNHIWCMAVLN-----------------GLECSMNLLEKYIKLYPSCLEL- 1317 (1690)
Q Consensus 1257 mA~dYY~~~~n-dEsla~~~n~k~d~~tKLN~IRq~I~lE-----------------dse~al~LfdklLe~~P~d~eL- 1317 (1690)
++.+||+.|.- +|.. -+.|++++-+...|.++ ..-++..-|-+.+.+.|.|.-.
T Consensus 781 LGinylr~f~~l~et~-------~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W 853 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETM-------KDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQW 853 (1238)
T ss_pred HhHHHHHHHHHcCCcc-------hhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhhe
Confidence 44555553211 1111 11244443333333322 3445556677777777877766
Q ss_pred -HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1318 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1318 -~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
-|-..+|+.++ .+-|-++|..+.+++|.|.. .|.--+-...+.|++=+...+.
T Consensus 854 ~NlgvL~l~n~d-~E~A~~af~~~qSLdP~nl~----~WlG~Ali~eavG~ii~~~~lf 907 (1238)
T KOG1127|consen 854 LNLGVLVLENQD-FEHAEPAFSSVQSLDPLNLV----QWLGEALIPEAVGRIIERLILF 907 (1238)
T ss_pred eccceeEEeccc-HHHhhHHHHhhhhcCchhhH----HHHHHHHhHHHHHHHHHHHHHH
Confidence 45555666666 77777888888888888888 6754444455555444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00068 Score=83.34 Aligned_cols=348 Identities=11% Similarity=0.046 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcC--CC------cccchH-----HHHHHHHHHHHhh-
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSR--TP------LNHRLD-----AYDAALSVLCRCA- 1135 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr--~s------~ddrl~-----aYdrAI~aLe~la- 1135 (1690)
+.+.|+-..+|-.+.+.++|.+.|..|...++.+|.-...++... +. |..+.. ...+-+..|=++.
T Consensus 141 ssic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 141 SSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKL 220 (611)
T ss_pred hceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhh
Confidence 346778888899999999999999999999999999222222211 00 001000 1222222221211
Q ss_pred ----hcCC----CC-cchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHH-HHhccCCccc
Q 000307 1136 ----SASD----GD-EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDIL-TCLTISDKLI 1205 (1690)
Q Consensus 1136 ----s~~~----pD-r~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~-~YLt~sDkc~ 1205 (1690)
.... +| .-+.-+--+|++...++-+-..+++.+-....+.++. .++-+. ....-+|. .|+.-++..+
T Consensus 221 ~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle--~dpfh~-~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 221 CKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE--KDPFHL-PCLPLHIACLYELGKSNKL 297 (611)
T ss_pred hhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--hCCCCc-chHHHHHHHHHHhcccchH
Confidence 0000 10 1111235689999999999999999998888888886 666665 33444444 3333344444
Q ss_pred h----hHHHHH----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh--
Q 000307 1206 F----WVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-- 1275 (1690)
Q Consensus 1206 A----wLc~iY----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-- 1275 (1690)
+ .|+..| ..=| -.|-.|+..++..||=.. +.+....||.-+.|-+..| ..|.. ..+-.+.+
T Consensus 298 f~lsh~LV~~yP~~a~sW~--aVg~YYl~i~k~seARry---~SKat~lD~~fgpaWl~fg-hsfa~---e~EhdQAmaa 368 (611)
T KOG1173|consen 298 FLLSHKLVDLYPSKALSWF--AVGCYYLMIGKYSEARRY---FSKATTLDPTFGPAWLAFG-HSFAG---EGEHDQAMAA 368 (611)
T ss_pred HHHHHHHHHhCCCCCcchh--hHHHHHHHhcCcHHHHHH---HHHHhhcCccccHHHHHHh-HHhhh---cchHHHHHHH
Confidence 4 444444 1111 135667777888888777 7777777888877777776 44432 22211111
Q ss_pred cccchhHHHHHHHH-HHHHhc-----chHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCC
Q 000307 1276 NLRSAHCFAVNHIW-CMAVLN-----GLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1347 (1690)
Q Consensus 1276 n~k~d~~tKLN~IR-q~I~lE-----dse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkN 1347 (1690)
.-+...-++=.|+= .|+..| ..+-|-..|..++..+|.|+=+ .|-......+. -.+|..-|+.+|..-+..
T Consensus 369 Y~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhc
Confidence 11111111111111 111122 5666667777777777777666 44444444444 335555666666332222
Q ss_pred CchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhh
Q 000307 1348 VPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMF 1427 (1690)
Q Consensus 1348 a~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~f 1427 (1690)
-+-.. .|.-+. .+.-.+.+- +....+|++.++++....+. ..+.|
T Consensus 448 ~~e~~-~w~p~~------~NLGH~~Rk-----------l~~~~eAI~~~q~aL~l~~k------~~~~~----------- 492 (611)
T KOG1173|consen 448 LNEKI-FWEPTL------NNLGHAYRK-----------LNKYEEAIDYYQKALLLSPK------DASTH----------- 492 (611)
T ss_pred ccccc-chhHHH------HhHHHHHHH-----------HhhHHHHHHHHHHHHHcCCC------chhHH-----------
Confidence 22110 231111 111122222 23778888888887554432 25667
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHH-HHHHH
Q 000307 1428 GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK-HCVRE 1467 (1690)
Q Consensus 1428 a~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i-~cLNN 1467 (1690)
+-+|.||+- .|+.+.|.+.|-|||-.+|+|.++ .||..
T Consensus 493 asig~iy~l--lgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 493 ASIGYIYHL--LGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHH--hcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 889999999 999999999999999999999444 45553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4e-05 Score=88.43 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcccc--CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----
Q 000307 1033 QCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1105 (1690)
Q Consensus 1033 lWl~lAl~~Lnq~~--n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----- 1105 (1690)
-..++|-.+=++-- =+.++|.+|++.|..||+++|++|+.|+.-+..|++++.-+.|..-|++|+++|| +|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~R 154 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGR 154 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHH
Confidence 35667766666633 3578999999999999999999999999999999999999999999999999995 777
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
|+..|+.++ .|++|+++|-....-. |++
T Consensus 155 LG~A~~~~g--------k~~~A~~aykKaLeld-P~N 182 (304)
T KOG0553|consen 155 LGLAYLALG--------KYEEAIEAYKKALELD-PDN 182 (304)
T ss_pred HHHHHHccC--------cHHHHHHHHHhhhccC-CCc
Confidence 899999999 9999999996655555 887
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0095 Score=71.41 Aligned_cols=309 Identities=15% Similarity=0.070 Sum_probs=225.8
Q ss_pred hhhHHHHH-----HHHHHhcccc--CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1029 LSNEQCVE-----MALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1029 ~d~qlWl~-----lAl~~Lnq~~--n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
.....|-. -|-+.++.-- -.-|+|.+|-.++.++=|.-+.-..+|..=+..=-+++....++.++.+|.+..+
T Consensus 70 ~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~ 149 (400)
T COG3071 70 AHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG 149 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC
Confidence 34455554 2444444433 3469999999999999999998888888888888899999999999999999975
Q ss_pred CCHH-----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1102 GSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1102 ~NY~-----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
+.-- .+..-++.+ .|+.|..-+.++.+-. |-. .+++..+.++|..+|+|+..+..+..|
T Consensus 150 ~~~l~v~ltrarlll~~~--------d~~aA~~~v~~ll~~~-pr~-------~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 150 DDTLAVELTRARLLLNRR--------DYPAARENVDQLLEMT-PRH-------PEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred CchHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4443 678889999 9999999998888877 666 899999999999999999999988888
Q ss_pred cccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHH
Q 000307 1177 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1177 Eq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
+...+-+++| +..+..+ .|+.+ +++......+-.
T Consensus 214 ~ka~~l~~~e-------~~~le~~--------------a~~gl----L~q~~~~~~~~g--------------------- 247 (400)
T COG3071 214 RKAGLLSDEE-------AARLEQQ--------------AWEGL----LQQARDDNGSEG--------------------- 247 (400)
T ss_pred HHccCCChHH-------HHHHHHH--------------HHHHH----HHHHhccccchH---------------------
Confidence 8533333333 3333221 11111 122111111100
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHH
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1336 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~v 1336 (1690)
+ .+..+. +.. ..|.+..+++.++-++|.+.+-+.|..+....++..-+.- |..+..++.-.+ +.+=+..
T Consensus 248 L-~~~W~~------~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d-~~~l~k~ 316 (400)
T COG3071 248 L-KTWWKN------QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGD-PEPLIKA 316 (400)
T ss_pred H-HHHHHh------ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCC-chHHHHH
Confidence 1 122221 011 2556677777777788887788889989999998876655 766667788887 7788899
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccc
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFS 1416 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy 1416 (1690)
.++.+...|+++ |+|.-|-+.++..+-|.+|...++. |++ . -+ ..+| |
T Consensus 317 ~e~~l~~h~~~p----~L~~tLG~L~~k~~~w~kA~~~lea--------------Al~---~----~~------s~~~-~ 364 (400)
T COG3071 317 AEKWLKQHPEDP----LLLSTLGRLALKNKLWGKASEALEA--------------ALK---L----RP------SASD-Y 364 (400)
T ss_pred HHHHHHhCCCCh----hHHHHHHHHHHHhhHHHHHHHHHHH--------------HHh---c----CC------Chhh-H
Confidence 999999999998 6999999999999999999887743 222 1 11 1245 6
Q ss_pred cccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh
Q 000307 1417 VSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1455 (1690)
Q Consensus 1417 ~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~ 1455 (1690)
.++++.+-+ .|...+|.+.+..+|-.
T Consensus 365 -----------~~la~~~~~--~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 -----------AELADALDQ--LGEPEEAEQVRREALLL 390 (400)
T ss_pred -----------HHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 899999999 99999999999999943
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=80.63 Aligned_cols=401 Identities=16% Similarity=0.105 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--HHHHHHhcCCCcccchHHHHHHHH
Q 000307 1052 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALS 1129 (1690)
Q Consensus 1052 yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--Lw~mYINsr~s~ddrl~aYdrAI~ 1129 (1690)
.|.|+..+. -.|+.+.-+.-.+++++|+++...++.+.|++-++++-+.|. +-...+ +-..|+.
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-----------a~~a~l~ 160 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-----------AVAAALQ 160 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-----------HHHHhhh
Confidence 344444444 345555666666666666666666666666666666666555 111111 1112222
Q ss_pred H-HHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhH
Q 000307 1130 V-LCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1208 (1690)
Q Consensus 1130 a-Le~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwL 1208 (1690)
+ +++.......|- -|.++-.+=.|.-.|+|.+||+ |+.+| |-.-+.-|..+|.+
T Consensus 161 ~~~~q~v~~v~e~s-------yel~yN~Ac~~i~~gky~qA~e----lL~kA----------~~~~~e~l~~~d~~---- 215 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDS-------YELLYNTACILIENGKYNQAIE----LLEKA----------LRICREKLEDEDTN---- 215 (652)
T ss_pred HHHHHhccCCCcch-------HHHHHHHHHHHHhcccHHHHHH----HHHHH----------HHHHHHhhcccccc----
Confidence 2 222222221222 4677888888888999999998 44311 11223335556665
Q ss_pred HHHH---HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhH--HHHHHHHHHHHHhhcCCcchhhhh--------
Q 000307 1209 CCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA--IKLIEMAVNSVELYSNGESLEKET-------- 1275 (1690)
Q Consensus 1209 c~iY---dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdna--lAL~smA~dYY~~~~ndEsla~~~-------- 1275 (1690)
-+.| +-.-|+=+.=+++..|..+|+..| |+.+++.+|-.. .|++.- +... +.++.....+.
T Consensus 216 eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i---y~~~i~~~~~D~~~~Av~~N--NLva-~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQGQTAEASSI---YVDIIKRNPADEPSLAVAVN--NLVA-LSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHH---HHHHHHhcCCCchHHHHHhc--chhh-hccccccCchHHHHHHHHH
Confidence 2222 222344455578888999999998 888876655433 122111 1122 12222211111
Q ss_pred --------cccchhHHHHHHHHHHHHh----cchHHHHHHHHHHHHhCCCcc-hhHHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1276 --------NLRSAHCFAVNHIWCMAVL----NGLECSMNLLEKYIKLYPSCL-ELVLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1276 --------n~k~d~~tKLN~IRq~I~l----Edse~al~LfdklLe~~P~d~-eL~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
-.++...-|-+++|...++ .--.++..++-++-...|.-. ++.|.++++...+....+..+++....
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 0011111112222222221 144556666655555554432 336666665554457788899999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHH----HHHHhhhcc--cccccchhhcccCCCCCCCCCCCC---Cc
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW----FHSVWKVQY--SQVEISDPLVADMSHSSPESTSTS---DP 1413 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~f----f~gia~~Q~--~~deALD~lr~g~s~i~~es~s~~---vS 1413 (1690)
..|.+.-- +=.-.+++.+.+|++..|++|..-| -.++-..+. ....++..+.....-.. +.++. .-
T Consensus 370 ~~p~~s~~---v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~--~a~~vl~~Ai 444 (652)
T KOG2376|consen 370 GHPEKSKV---VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDND--SASAVLDSAI 444 (652)
T ss_pred cCCchhHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCc--cHHHHHHHHH
Confidence 99999332 3455677889999999999999953 333333333 44555555553322110 10000 00
Q ss_pred ccccccccchhhhhHHHHH-HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000307 1414 EFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1492 (1690)
Q Consensus 1414 Dfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV 1492 (1690)
+.|.-....--+.-.+|++ .-+++.+|+.+||-.-||.-++++|+- .++|---..= ....|-++|+.|+..+.-.
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a--~~~~d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTA--YARLDPEKAESLSKKLPPL 520 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHH--HHhcCHHHHHHHhhcCCCc
Confidence 1110000000111234444 556777899999999999999999976 4444332221 1234678999999844222
Q ss_pred HHHH----h----hhccccccc
Q 000307 1493 NSYL----D----RARSLPYLK 1506 (1690)
Q Consensus 1493 sTYL----D----TAWILf~~~ 1506 (1690)
.+.. | +.|+.+-++
T Consensus 521 ~~l~~vdVd~LE~s~ga~~~~~ 542 (652)
T KOG2376|consen 521 KGLKAVDVDALEKSDGAKYSEA 542 (652)
T ss_pred ccchhcCchHhhhccCcchhhh
Confidence 2222 2 258888776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00089 Score=82.93 Aligned_cols=362 Identities=17% Similarity=0.133 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccc
Q 000307 1150 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1229 (1690)
Q Consensus 1150 LDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~ 1229 (1690)
.|++|+.++++..+|++++||..|...+. -.-. .+.+..+-+.+|+..|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~----~I~D--------------------------k~~~~E~rA~ll~kLg~ 53 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK----QILD--------------------------KLAVLEKRAELLLKLGR 53 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh----hCCC--------------------------HHHHHHHHHHHHHHcCC
Confidence 68999999999999999999997644442 0000 23445567899999999
Q ss_pred hhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 000307 1230 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 1309 (1690)
Q Consensus 1230 ~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe 1309 (1690)
.+||..+ |..+++.+|+|....-.+. ...-. +.. +.-++.+....+++.+-+
T Consensus 54 ~~eA~~~---y~~Li~rNPdn~~Yy~~L~-~~~g~---~~~---------------------~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 54 KEEAEKI---YRELIDRNPDNYDYYRGLE-EALGL---QLQ---------------------LSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHHHHHH---HHHHHHHCCCcHHHHHHHH-HHHhh---hcc---------------------cccccHHHHHHHHHHHHH
Confidence 9999999 9999999999986666552 22211 000 001123333344444444
Q ss_pred hCCCcchh--------------HHHHHHHh--hccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhH---
Q 000307 1310 LYPSCLEL--------------VLMKARLQ--KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDF--- 1370 (1690)
Q Consensus 1310 ~~P~d~eL--------------~L~AayL~--~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~--- 1370 (1690)
.||.+.-+ .++..||. .++ +.+++.+=...|-.+|....-+..+-..|+..+-..+.+..
T Consensus 106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 44433222 12222221 111 12222222222323454444233333222222211111110
Q ss_pred ------HHHHHHHHHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChH
Q 000307 1371 ------AAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1443 (1690)
Q Consensus 1371 ------ai~L~~~ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~ 1443 (1690)
..-+..-||++--+... ..++|++.+.++..|.+. +-|+| -..+.+|-+ .|+.+
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely-----------~~KarilKh--~G~~~ 245 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELY-----------MTKARILKH--AGDLK 245 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHH-----------HHHHHHHHH--CCCHH
Confidence 01122224555444333 666777777766666533 45777 678888888 88888
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHH
Q 000307 1444 EARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQ 1523 (1690)
Q Consensus 1444 EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~ 1523 (1690)
+|..++|.|-+..... -..-+..|.|+.-.+ ..++|+.|-. +|.+...
T Consensus 246 ~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~-~~e~A~~~~~--------------~Ftr~~~--------------- 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD--RYINSKCAKYLLRAG-RIEEAEKTAS--------------LFTREDV--------------- 293 (517)
T ss_pred HHHHHHHHHHhCChhh--HHHHHHHHHHHHHCC-CHHHHHHHHH--------------hhcCCCC---------------
Confidence 8888888888888866 334445666655544 3555555444 4444221
Q ss_pred HHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhH
Q 000307 1524 LIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESV 1603 (1690)
Q Consensus 1524 liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~ 1603 (1690)
+..++.+..=-+|+ +..+.++..- =.+|++||--+..+.+||. +---.+.
T Consensus 294 ----------~~~~~L~~mQc~Wf--------------~~e~a~a~~r--~~~~~~ALk~~~~v~k~f~----~~~~DQf 343 (517)
T PF12569_consen 294 ----------DPLSNLNDMQCMWF--------------ETECAEAYLR--QGDYGLALKRFHAVLKHFD----DFEEDQF 343 (517)
T ss_pred ----------CcccCHHHHHHHHH--------------HHHHHHHHHH--HhhHHHHHHHHHHHHHHHH----HHhcccc
Confidence 11122333334675 3444454443 2689999999999999988 4444455
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000307 1604 LFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1671 (1690)
Q Consensus 1604 ~fwA~s~l~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~ 1671 (1690)
-|-.-.+==..+ ..||+--.|.+.|.+ +.||-+|. ..+++.|+.+--.
T Consensus 344 DFH~Yc~RK~t~---------r~Y~~~L~~ed~l~~-----~~~y~raa------~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 344 DFHSYCLRKMTL---------RAYVDMLRWEDKLRS-----HPFYRRAA------KGAIRIYLELHDK 391 (517)
T ss_pred cHHHHHHhhccH---------HHHHHHHHHHHHhhc-----CHHHHHHH------HHHHHHHHHHhcC
Confidence 555443333333 467999999999998 89999986 5677888877543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.7e-05 Score=68.00 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=55.9
Q ss_pred HHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1036 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1036 ~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
.+|..++.+ |+|++|...|.++++.+|.++.+|+.++.+|+.++...++..+|++|++.+|+|
T Consensus 2 ~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQ-----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHC-----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555 899999999999999999999999999999999999999999999999999986
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=86.35 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
+..++|...|+|||..||....||..+++=|+.+++...|.+.+++||+.+|.+|. |+++|--.. +=.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh~ 415 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MHF 415 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------chH
Confidence 44589999999999999999999999999999999999999999999999999998 889998877 333
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
=|+-.|-+....- |-- .=++..|.+||-..++.+.||.-+.|-- .-|+.|+.....--..|..++|-..
T Consensus 416 YaLyYfqkA~~~k-PnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai---~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 416 YALYYFQKALELK-PND-------SRLWVALGECYEKLNRLEEAIKCYKRAI---LLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHHHhcC-CCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHH---hccccchHHHHHHHHHHHHHHhHHH
Confidence 3444443332322 322 3478899999999999999999877765 3344454555555567888888877
Q ss_pred hhHHH
Q 000307 1206 FWVCC 1210 (1690)
Q Consensus 1206 AwLc~ 1210 (1690)
|..++
T Consensus 485 Aa~~y 489 (559)
T KOG1155|consen 485 AAQYY 489 (559)
T ss_pred HHHHH
Confidence 74443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00049 Score=90.37 Aligned_cols=247 Identities=16% Similarity=0.217 Sum_probs=171.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcccchHHHHHHHH
Q 000307 1057 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALS 1129 (1690)
Q Consensus 1057 dLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~ddrl~aYdrAI~ 1129 (1690)
+=|.|-+-.+|+++.+|..|..++.+...-++|+..+++|..-= ||. +|--|+|.+..+..- +.-..
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI--N~REeeEKLNiWiA~lNlEn~yG~e----esl~k 1518 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI--NFREEEEKLNIWIAYLNLENAYGTE----ESLKK 1518 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC--CcchhHHHHHHHHHHHhHHHhhCcH----HHHHH
Confidence 34678899999999999999999999999999999999999765 454 999999998222200 12233
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHH
Q 000307 1130 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1209 (1690)
Q Consensus 1130 aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc 1209 (1690)
++|+... + -|- +=+++.|..+|..++.++.|++.++++.. ||+ +.+..|+-
T Consensus 1519 VFeRAcq-y-cd~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~K--------------KF~------q~~~vW~~ 1569 (1710)
T KOG1070|consen 1519 VFERACQ-Y-CDA-------YTVHLKLLGIYEKSEKNDEADELLRLMLK--------------KFG------QTRKVWIM 1569 (1710)
T ss_pred HHHHHHH-h-cch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHH--------------Hhc------chhhHHHH
Confidence 3433322 2 233 55899999999999999999997777763 332 45566754
Q ss_pred HHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHH
Q 000307 1210 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1289 (1690)
Q Consensus 1210 ~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IR 1289 (1690)
.+++++..+..++|-.+ +.-|+.+.-. .--+.+|+
T Consensus 1570 ----------y~~fLl~~ne~~aa~~l------------------L~rAL~~lPk-----------------~eHv~~Is 1604 (1710)
T KOG1070|consen 1570 ----------YADFLLRQNEAEAAREL------------------LKRALKSLPK-----------------QEHVEFIS 1604 (1710)
T ss_pred ----------HHHHHhcccHHHHHHHH------------------HHHHHhhcch-----------------hhhHHHHH
Confidence 35666666655555444 2233222210 11234577
Q ss_pred HHHHhc----chHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCC-ccHHHHHHHHHh--CCCCCchhHHHHHHHHHHH
Q 000307 1290 CMAVLN----GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD-LSSVGFEEALIK--WPKGVPGIQCIWNQYVEYA 1362 (1690)
Q Consensus 1290 q~I~lE----dse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e-~Ai~vfe~aL~~--~PkNa~g~qcaW~QLiq~A 1362 (1690)
.++.+| |.+.+..||+-+|..||.=.+|+++...|.++.... ....+||.++++ .|+.+.-.--.|.+|=..-
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 777666 999999999999999999999977777777776333 445999999764 5666665455666665554
Q ss_pred HhcCChhHHHHHHHHHHHHHh
Q 000307 1363 LQNGRHDFAAELMDRWFHSVW 1383 (1690)
Q Consensus 1363 l~~e~~d~ai~L~~~ff~gia 1383 (1690)
=..++.+.|..=+.+|..++.
T Consensus 1685 Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1685 GDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred CchhhHHHHHHHHHHHHHHhh
Confidence 455667777777777777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.017 Score=73.56 Aligned_cols=390 Identities=17% Similarity=0.130 Sum_probs=231.0
Q ss_pred ccccccccchhh----hhhhhhchh----hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 000307 1009 RQSSFFRSRNGV----LNKLKQVEL----SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLL 1078 (1690)
Q Consensus 1009 ~~~rYF~~~~d~----in~Le~~~~----d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEIN--PtSAeaWyeyl~ 1078 (1690)
+...||....+. ..++|+..- ..+.|--+|+-+..- |.--+|.+||+.++-+- |....++.+-+.
T Consensus 327 d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-----g~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 327 DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-----GSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-----ccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445555555554 336676663 338888888877544 44589999999999999 888888877777
Q ss_pred HHHhC-CCCchHHHHHHHHHh--------cCCCCHH-HHHHHHh---cCCCcccchHHHHHHHHHHHHhhhcCCCCcchh
Q 000307 1079 IFYSN-TNSVGKDDMFSYSVK--------HNEGSYA-LWLMYIN---SRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1079 lY~~~-~~~~ea~emfekAVe--------laP~NY~-Lw~mYIN---sr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~ 1145 (1690)
+++.+ +..+++.++-.+|+. +.|..|- ++-.|-. +....+.|+.--.+++++|++.+... +..
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d--- 477 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD--- 477 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC---
Confidence 77665 558899999999998 3344444 4444433 23567788888899999999988876 665
Q ss_pred hhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch--hHHHH----HHHhhccc
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF--WVCCV----YLVIYRKL 1219 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A--wLc~i----Ydl~YrvL 1219 (1690)
.++++++.--|.-+++.+.|.+.+.+... +++... -..+-=+..+++...+-.. .|++. |-.+|..|
T Consensus 478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~--l~~~~~-~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 478 ----PLVIFYLALQYAEQRQLTSALDYAREALA--LNRGDS-AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcCCcc-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 68899999999999999999888888775 522221 2223333344444444333 22111 12222222
Q ss_pred cHHHHhhc--cchhhhhcC------CCC-----------------------CcccchhhhhhHHHHHHHHHHHHHhhcCC
Q 000307 1220 PDAVLQLL--ECEKELFAI------DWP-----------------------PVQLEDDEKQRAIKLIEMAVNSVELYSNG 1268 (1690)
Q Consensus 1220 PGd~y~qn--e~~KEAf~I------~W~-----------------------yvqvlkdEPdnalAL~smA~dYY~~~~nd 1268 (1690)
-+.+-.+. |...|++.. -|. ...-.++-+.+-..+.+++...-.. .|.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~-~~s 629 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS-AGS 629 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh-ccc
Confidence 22221111 112222111 011 2222222333334444443222222 121
Q ss_pred cch-hhhh--cccchhHHHHHHHHHHHH-----hcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHH
Q 000307 1269 ESL-EKET--NLRSAHCFAVNHIWCMAV-----LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEE 1339 (1690)
Q Consensus 1269 Esl-a~~~--n~k~d~~tKLN~IRq~I~-----lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~ 1339 (1690)
+.. .... ......-+++..|...++ ..-...+..-+.++=+.+|.++.+ -+-+.-+..++.-++|...|..
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 111 0000 111111122222222322 224444554555667888999998 6666666666667899999999
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH--HHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCccccc
Q 000307 1340 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE--LMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSV 1417 (1690)
Q Consensus 1340 aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~--L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~ 1417 (1690)
||.++|+.++ +=--+.+..++.|+...+.. ++ .|+++.+.. +.+-.
T Consensus 710 Al~ldP~hv~----s~~Ala~~lle~G~~~la~~~~~L-----------------~dalr~dp~----------n~eaW- 757 (799)
T KOG4162|consen 710 ALALDPDHVP----SMTALAELLLELGSPRLAEKRSLL-----------------SDALRLDPL----------NHEAW- 757 (799)
T ss_pred HHhcCCCCcH----HHHHHHHHHHHhCCcchHHHHHHH-----------------HHHHhhCCC----------CHHHH-
Confidence 9999999999 55566777777765555444 33 245552211 12422
Q ss_pred ccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1418 SNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1418 ~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
=+||-++-+ +|+.+.|-+-|+.|++..+.+
T Consensus 758 ----------~~LG~v~k~--~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 758 ----------YYLGEVFKK--LGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred ----------HHHHHHHHH--ccchHHHHHHHHHHHhhccCC
Confidence 367889999 999999999999999988755
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=68.01 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH----
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY---- 1104 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY---- 1104 (1690)
+.+..+|..++.+ |+++.|...|.++++.+|++ +.+++.++.+|+..+...+|..+|+.+++..|++-
T Consensus 3 ~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKA-----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccH
Confidence 4567777777776 78999999999999999987 68999999999999999999999999999998851
Q ss_pred ---HHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1105 ---ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1105 ---~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
.++.+|...+ .+++|+..|.++...+ |+.
T Consensus 78 ~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~-p~~ 109 (119)
T TIGR02795 78 ALLKLGMSLQELG--------DKEKAKATLQQVIKRY-PGS 109 (119)
T ss_pred HHHHHHHHHHHhC--------ChHHHHHHHHHHHHHC-cCC
Confidence 1788899888 9999999999998887 554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00024 Score=85.34 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
++++.|+++|.+-.+.+|+ +++.++.+|...++..+|...+.+|++.+|.++. .+.++++.+ .|+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--------~~~ 251 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--------KYE 251 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHH
Confidence 5689999999999999975 6777999999999999999999999999999999 567788999 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.|+.+..+.+... |+. .+...+|+++|.+.|++++|+.+||-+=
T Consensus 252 lAL~iAk~av~ls-P~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSE-------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chh-------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999888888 888 8999999999999999999999887554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0003 Score=81.37 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=96.5
Q ss_pred hhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHh
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---SVGKDDMFSYSVK 1098 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~---~~ea~emfekAVe 1098 (1690)
.+|-+.|.|.+.|.-|+--|+.+ ++++.|+..|.+|+.+.|+++++|--|+..+|.+.+ ..++.+||.+|++
T Consensus 147 ~~L~~nP~d~egW~~Lg~~ym~~-----~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 147 THLQQNPGDAEGWDLLGRAYMAL-----GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHhCCCCchhHHHHHHHHHHh-----cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 47788899999999999999998 788999999999999999999999999998887766 5678899999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD 1141 (1690)
++|.|-. |+.-|...+ .|.+|+..++.|.+..+++
T Consensus 222 ~D~~~iral~lLA~~afe~g--------~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQG--------DYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cCCccHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCCCC
Confidence 9999988 888899999 9999999999998876343
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00047 Score=58.91 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000307 1072 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1147 (1690)
Q Consensus 1072 aWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa 1147 (1690)
+|+.++.+|...+...++...|+++++..|.+.. ++.+|...+ .+++|+..|....... +..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~----- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDN----- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-Ccc-----
Confidence 6899999999999999999999999999998744 788888888 9999999998877766 555
Q ss_pred hhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1148 CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1148 ~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+++..++.+|...|++++|+..+.+...
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 48899999999999999999998877664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0055 Score=76.18 Aligned_cols=313 Identities=14% Similarity=0.048 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchh
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~ 1145 (1690)
+|+......++...+..++|++.+++.-..-+|... .+.+|+.++ .+++|..+|..+...+ ||+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg--------~~~eA~~~y~~Li~rN-Pdn--- 71 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG--------RKEEAEKIYRELIDRN-PDN--- 71 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-CCc---
Confidence 556666666777777777777777777666666555 677777777 7777777777777777 777
Q ss_pred hhhhHHHHHHHHHHHhhhc-----CHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhcccc
Q 000307 1146 SACILDLFLQMLQCFCMSG-----NTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLP 1220 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSG-----nydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLP 1220 (1690)
.+.+-.+..+..... ..++.++.++.+.. .-|+......+.+-...|| ..--+.+.|...+
T Consensus 72 ----~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~-----~yp~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~---- 137 (517)
T PF12569_consen 72 ----YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE-----KYPRSDAPRRLPLDFLEGD-EFKERLDEYLRPQ---- 137 (517)
T ss_pred ----HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH-----hCccccchhHhhcccCCHH-HHHHHHHHHHHHH----
Confidence 666666666664433 34444444444443 2222122222322222222 1224555552211
Q ss_pred HHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-cccchhHHHH---HHHHHHHH-hc
Q 000307 1221 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-NLRSAHCFAV---NHIWCMAV-LN 1295 (1690)
Q Consensus 1221 Gd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-n~k~d~~tKL---N~IRq~I~-lE 1295 (1690)
+..|++. +|.- ... +=.+|..+-.+.+.+..|+............. ...-+..+.| .++.|..- ..
T Consensus 138 ----l~KgvPs-lF~~---lk~-Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 138 ----LRKGVPS-LFSN---LKP-LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred ----HhcCCch-HHHH---HHH-HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 1122211 1111 111 11256666677777555655411111111110 0111222222 33444443 44
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1374 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L 1374 (1690)
+.+.|+.+.++.++..|+.+++ +++|--+...|-..+|...++.|-++++.+-- +=...+.+.++.+.+++|..+
T Consensus 209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy----iNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY----INSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH----HHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999 77777777777677999999999999999988 888889999999999999999
Q ss_pred HHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHH---HHHHHHhhhcChHHHHHHHHH
Q 000307 1375 MDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL---NLSLHRLLQNDWNEARLAIDA 1451 (1690)
Q Consensus 1375 ~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~L---GD~Lyq~Lqg~~~EAf~AYDk 1451 (1690)
+.-|- +.+..+ .+|.+ .-|+| ||+ |.+|++ +|++..|..-|..
T Consensus 285 ~~~Ft-----------------r~~~~~---------~~~L~--~mQc~----Wf~~e~a~a~~r--~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 285 ASLFT-----------------REDVDP---------LSNLN--DMQCM----WFETECAEAYLR--QGDYGLALKRFHA 330 (517)
T ss_pred HHhhc-----------------CCCCCc---------ccCHH--HHHHH----HHHHHHHHHHHH--HhhHHHHHHHHHH
Confidence 95421 111111 23333 12333 554 448888 9999999877666
Q ss_pred HHhh
Q 000307 1452 ALKA 1455 (1690)
Q Consensus 1452 ALk~ 1455 (1690)
.++.
T Consensus 331 v~k~ 334 (517)
T PF12569_consen 331 VLKH 334 (517)
T ss_pred HHHH
Confidence 6543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00016 Score=64.14 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1109 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~m 1109 (1690)
.|+++.|+.+|.++++.+|+++++++.|+.+|+..++..+|..+|+++++.+|++-.++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999986444443
|
... |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0075 Score=75.52 Aligned_cols=303 Identities=18% Similarity=0.204 Sum_probs=192.9
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~ 1122 (1690)
++.|+-+.|++.-.++|.+|+.|.+-|-.|+.+|-.-+...++.-+|.-|.+..|+|-. |+.+=+..|
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-------- 123 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-------- 123 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------
Confidence 57899999999999999999999999999999999999999999999999999999988 445555555
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccH-----------
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL----------- 1191 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSL----------- 1191 (1690)
.|+-....=-++-... +.. +..|| -.+--+--.|+|..|+..++..+++...+.+...+.-
T Consensus 124 d~~~~~~tr~~LLql~-~~~--ra~w~-----~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLR-PSQ--RASWI-----GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred hhhhHHHHHHHHHHhh-hhh--HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 4443333222222222 332 22222 2233344468899999999888875543333211111
Q ss_pred ------HHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHH--------
Q 000307 1192 ------SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM-------- 1257 (1690)
Q Consensus 1192 ------sKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~sm-------- 1257 (1690)
.+.+..|+...++++ -.+.|....+++++..+..+||..+ |..++.-+|||.-....+
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~-----Dkla~~e~ka~l~~kl~~lEeA~~~---y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIV-----DKLAFEETKADLLMKLGQLEEAVKV---YRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHH-----HHHHHhhhHHHHHHHHhhHHhHHHH---HHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 122222222222222 0567788888999999999999888 888888888886432222
Q ss_pred ----HH-HHHHh-----------------hcCCcchhhhh--------cc--------------c---c-----------
Q 000307 1258 ----AV-NSVEL-----------------YSNGESLEKET--------NL--------------R---S----------- 1279 (1690)
Q Consensus 1258 ----A~-dYY~~-----------------~~ndEsla~~~--------n~--------------k---~----------- 1279 (1690)
++ .-|.. +.+++++.... .+ . .
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 11 01110 01111111110 00 0 0
Q ss_pred ---------------hhHHHHHHHHH---HHH-hc---chHHHHHHHHHHHHhCCCcchhHHHHHHHhhcc-CCCccHHH
Q 000307 1280 ---------------AHCFAVNHIWC---MAV-LN---GLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVG 1336 (1690)
Q Consensus 1280 ---------------d~~tKLN~IRq---~I~-lE---dse~al~LfdklLe~~P~d~eL~L~AayL~~k~-m~e~Ai~v 1336 (1690)
.++-+..++.+ ++. .+ +.+.|..+.+.++...|+=+|+-++-++|.+.. ..+.|..-
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 01111112222 222 22 788899999999999999999966666766655 45577778
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
+++|=+.+--+.- |=--++.|.++.+..++|.++|..
T Consensus 428 l~ea~elD~aDR~----INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 428 LDEAQELDTADRA----INSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHhccchhHH----HHHHHHHHHHHccccHHHHHHHHH
Confidence 8888888776665 333556778999999999999855
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=76.84 Aligned_cols=116 Identities=11% Similarity=0.099 Sum_probs=99.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHH------HHHHhcCCCcccch
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW------LMYINSRTPLNHRL 1121 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw------~mYINsr~s~ddrl 1121 (1690)
.....++...-|..-|.-||++++=|..++.+|+.++.-..+...|.+|++++|+|-.++ +||..-. .
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-----~- 207 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-----Q- 207 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----c-
Confidence 345578888999999999999999999999999999999999999999999999999933 3333322 1
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+-.+|..+|.+..+.. |+. .-.+.+|.--|-++|+|..|+.++..|+.
T Consensus 208 -~ta~a~~ll~~al~~D-~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 208 -MTAKARALLRQALALD-PAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred -ccHHHHHHHHHHHhcC-Ccc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3457777887777766 888 89999999999999999999999999996
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00054 Score=78.20 Aligned_cols=99 Identities=11% Similarity=0.031 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHH-hccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1030 SNEQCVEMALLI-LNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~-Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
+...|...|+.+ +.+ ++|+.|+..|...++.+|++ +.+||.++.+|+..+...+|...|+++|+..|++-+
T Consensus 141 ~e~~~Y~~A~~l~~~~-----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDK-----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 557788888865 444 78999999999999999998 689999999999999999999999999999998755
Q ss_pred -------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 -------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
++..|...+ .+++|+..|+.+.+.+ |+.
T Consensus 216 ~~dAl~klg~~~~~~g--------~~~~A~~~~~~vi~~y-P~s 250 (263)
T PRK10803 216 AADAMFKVGVIMQDKG--------DTAKAKAVYQQVIKKY-PGT 250 (263)
T ss_pred hhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-cCC
Confidence 677888888 9999999999999998 775
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=68.79 Aligned_cols=106 Identities=9% Similarity=-0.011 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
...|.-+|..+... |+++.|+..|.+||++.|.. +.+|+.++.+|...+..++|..+|++|++..|.+-.
T Consensus 35 a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 47788888777655 77999999999999998763 469999999999999999999999999999988766
Q ss_pred --HHHHHHhcC------CCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 --LWLMYINSR------TPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 --Lw~mYINsr------~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
++.+|.+.+ ..++..+..|++|+..|++..... |+.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~-p~~ 153 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA-PGN 153 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC-ccc
Confidence 666666433 234444556778888888877776 654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=69.18 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
.....+..+|..++.. |+++.|+..|.++++++|+. +.+|+.++.+|...+..+++..++++|++..|.+..
T Consensus 33 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 33 KEAFVYYRDGMSAQAD-----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred hhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 3445566666666554 88999999999999998874 579999999999999999999999999999998877
Q ss_pred ----HHHHHHhcCC------CcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 ----LWLMYINSRT------PLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 ----Lw~mYINsr~------s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
++.+|...+. .++..+..|++|+++|.+..... |+.
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~-p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA-PNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC-chh
Confidence 6677777652 23444555788888887766655 554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0054 Score=76.05 Aligned_cols=246 Identities=20% Similarity=0.127 Sum_probs=138.3
Q ss_pred hhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH-HHhhcc-ccHHH
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRK-LPDAV 1223 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~Yrv-LPGd~ 1223 (1690)
.+..+-++..++..|..+|+|++|+. +.. + .+++ .|+.|- ..| ++.=.. -.|.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~----l~k--------~-----Al~~------l~k~~G-~~hl~va~~l~~~a~~ 250 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEP----LCK--------Q-----ALRI------LEKTSG-LKHLVVASMLNILALV 250 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHH----HHH--------H-----HHHH------HHHccC-ccCHHHHHHHHHHHHH
Confidence 33448889999999999999999998 332 1 1111 111111 122 222222 36788
Q ss_pred HhhccchhhhhcCCCCCcccch--------hhhhhHHHHHHHHHHHHHhhcCCcchhhhh-------cc----cchhHHH
Q 000307 1224 LQLLECEKELFAIDWPPVQLED--------DEKQRAIKLIEMAVNSVELYSNGESLEKET-------NL----RSAHCFA 1284 (1690)
Q Consensus 1224 y~qne~~KEAf~I~W~yvqvlk--------dEPdnalAL~smA~dYY~~~~ndEsla~~~-------n~----k~d~~tK 1284 (1690)
|+..++.+||..+ |...+. +.|.-+..+..+|+-||+. |+-.-+... .+ ......+
T Consensus 251 y~~~~k~~eAv~l---y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 251 YRSLGKYDEAVNL---YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHhccHHHHHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 8888888888777 776664 4899999999999888873 433322221 00 1111122
Q ss_pred HHHHHHHHH----hcchHHHHHHHHHHHHhCC---Ccch--h-----HHHHHHHhhccCCCccHHHHHHHHHhC----CC
Q 000307 1285 VNHIWCMAV----LNGLECSMNLLEKYIKLYP---SCLE--L-----VLMKARLQKHDFGDLSSVGFEEALIKW----PK 1346 (1690)
Q Consensus 1285 LN~IRq~I~----lEdse~al~LfdklLe~~P---~d~e--L-----~L~AayL~~k~m~e~Ai~vfe~aL~~~----Pk 1346 (1690)
.. +.-+++ .++.+++..|+.+.++++- .+.+ + -|...|+.+.+ .++|...|++||++. =+
T Consensus 326 ~~-l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 326 AQ-LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccC
Confidence 21 111111 2266666666666555442 2222 1 34444455544 556666666666655 33
Q ss_pred CCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhh
Q 000307 1347 GVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVM 1426 (1690)
Q Consensus 1347 Na~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~ 1426 (1690)
...|..-.-+|+.....+.+++..+.++..+ +.++. + .++ .| .-|.+
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~--------------~~~i~-~--~~g---------~~-------~~~~~ 450 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEE--------------AKDIM-K--LCG---------PD-------HPDVT 450 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHH--------------HHHHH-H--HhC---------CC-------CCchH
Confidence 3333333334555544555555555555533 33333 1 111 11 22466
Q ss_pred hHHHHH--HHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1427 FGYLNL--SLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1427 fa~LGD--~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
|.|.|+ .|-. +|+.++|+..-++++.|..
T Consensus 451 ~~~~nL~~~Y~~--~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 451 YTYLNLAALYRA--QGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHHH--cccHHHHHHHHHHHHHHHH
Confidence 789999 6667 9999999999999987764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.017 Score=70.40 Aligned_cols=293 Identities=14% Similarity=0.104 Sum_probs=166.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC-CHH-----HHHHHHhcCCCcccch
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA-----LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~-NY~-----Lw~mYINsr~s~ddrl 1121 (1690)
+.+..+.|.+.|-.++---|=.=.+|-++..+ .++ .++...-|-.-|. +-| +...|....
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l----it~---~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~------- 241 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL----ITD---IEILSILVVGLPSDMHWMKKFFLKKAYQELH------- 241 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHh----hch---HHHHHHHHhcCcccchHHHHHHHHHHHHHHH-------
Confidence 44556778888888777778888888888777 222 2455555544443 333 444454444
Q ss_pred HHHHHHHHHHHHhhhc-CCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHH----
Q 000307 1122 DAYDAALSVLCRCASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT---- 1196 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~-~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~---- 1196 (1690)
.-++|++-+++++.. + +.. .=+--+.+-++--+.++++||...+.|.. +. ..-|.+|-+
T Consensus 242 -q~~e~~~k~e~l~~~gf-~~~-------~~i~~~~A~~~y~~rDfD~a~s~Feei~k------nD-PYRl~dmdlySN~ 305 (559)
T KOG1155|consen 242 -QHEEALQKKERLSSVGF-PNS-------MYIKTQIAAASYNQRDFDQAESVFEEIRK------ND-PYRLDDMDLYSNV 305 (559)
T ss_pred -HHHHHHHHHHHHHhccC-Ccc-------HHHHHHHHHHHhhhhhHHHHHHHHHHHHh------cC-CCcchhHHHHhHH
Confidence 678888888888776 5 444 34455677788888999999999988885 33 344444443
Q ss_pred -HhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh
Q 000307 1197 -CLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET 1275 (1690)
Q Consensus 1197 -YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~ 1275 (1690)
|......++.-|+..= .++|+=++--.--- .+||.. .+
T Consensus 306 LYv~~~~skLs~LA~~v-------------------------------~~idKyR~ETCCiI-aNYYSl-r~-------- 344 (559)
T KOG1155|consen 306 LYVKNDKSKLSYLAQNV-------------------------------SNIDKYRPETCCII-ANYYSL-RS-------- 344 (559)
T ss_pred HHHHhhhHHHHHHHHHH-------------------------------HHhccCCccceeee-hhHHHH-HH--------
Confidence 3333333333333221 11111111111111 266653 11
Q ss_pred cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHH-HHHhhccCCCccHHHHHHHHHhCCCCCchhHH
Q 000307 1276 NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC 1353 (1690)
Q Consensus 1276 n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~A-ayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qc 1353 (1690)
+.|.|+..|++.|+++|.-.-+ +|.+ -||.+|+ ...|+..|.+|++++|.+..
T Consensus 345 --------------------eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyR---- 399 (559)
T KOG1155|consen 345 --------------------EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYR---- 399 (559)
T ss_pred --------------------hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHH----
Confidence 4455666666666666666666 4444 4566666 55666666666666666666
Q ss_pred HHHHHHH-HHHhcCChhHHHHHHHH-----------H-HHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCccccccc
Q 000307 1354 IWNQYVE-YALQNGRHDFAAELMDR-----------W-FHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSN 1419 (1690)
Q Consensus 1354 aW~QLiq-~Al~~e~~d~ai~L~~~-----------f-f~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~ 1419 (1690)
+|+=|-| +++-+- .-=++-..++ | -+|=+|.+. ..++|+..+.+....... ..+-|
T Consensus 400 AWYGLGQaYeim~M-h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e~~~l--- 469 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKM-HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------EGSAL--- 469 (559)
T ss_pred HHhhhhHHHHHhcc-hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------chHHH---
Confidence 6665555 333221 1111111111 1 122222222 555666655544332211 24556
Q ss_pred ccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhc
Q 000307 1420 RNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1456 (1690)
Q Consensus 1420 ~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~n 1456 (1690)
..||+.|-+ .++.+||-.+|+|+++.-
T Consensus 470 --------~~LakLye~--l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 470 --------VRLAKLYEE--LKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred --------HHHHHHHHH--HHhHHHHHHHHHHHHHHH
Confidence 889999999 899999999999999843
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=76.10 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=88.8
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CCC----chHHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSN---TNS----VGKDDMFSY 1095 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~---~~~----~ea~emfek 1095 (1690)
-|+..+.+..+|-..+..+-+. |.|+.|+..+.++|++||.+..+|++...+.... ++. +...+++.+
T Consensus 134 al~~dpkNy~AW~~R~w~l~~l-----~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRTL-----GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 3455566667887777655544 6699999999999999999999999999887765 222 356788999
Q ss_pred HHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhh
Q 000307 1096 SVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM 1162 (1690)
Q Consensus 1096 AVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~q 1162 (1690)
|++.+|+|+..|.+....=......+..+.+|+++.++..... ..|+..+++ |+++|+.
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-----~~s~~al~~---l~d~~~~ 267 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-----SNHVFALSD---LLDLLCE 267 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-----CCcHHHHHH---HHHHHHh
Confidence 9999999998775544433222233456777888887755432 245555544 4566654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=73.94 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=124.4
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~ 1102 (1690)
-|+..|.....|+-||.-|--+ |..+.|...|.+||.++|++..|+-.|+-+.+.++..+++..+|++|++- |
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~-----Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P- 133 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKL-----GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-P- 133 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHc-----CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-C-
Confidence 6777888899999999988777 55599999999999999999999999999999999999999999999973 2
Q ss_pred CHH--------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1103 SYA--------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1103 NY~--------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
.|. +++.-+..+ ..+.|-..|.+-.... |+. .-.++.|+++.--.|+|-.|-.-++
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~g--------q~~~A~~~l~raL~~d-p~~-------~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAG--------QFDQAEEYLKRALELD-PQF-------PPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred CCCCcchhhhhhHHHHhhcC--------CchhHHHHHHHHHHhC-cCC-------ChHHHHHHHHHHhcccchHHHHHHH
Confidence 333 777777777 5566666665544444 777 8889999999999999999999999
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
+..+ .-|.+-..|.| -|++--..||+..+
T Consensus 198 ~~~~--~~~~~A~sL~L-~iriak~~gd~~~a 226 (250)
T COG3063 198 RYQQ--RGGAQAESLLL-GIRIAKRLGDRAAA 226 (250)
T ss_pred HHHh--cccccHHHHHH-HHHHHHHhccHHHH
Confidence 9887 44444312322 34455555666554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=67.06 Aligned_cols=115 Identities=25% Similarity=0.203 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHhCCCcc--hh---HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhH
Q 000307 1296 GLECSMNLLEKYIKLYPSCL--EL---VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDF 1370 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~--eL---~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ 1370 (1690)
+...+...++.+++.+|... .+ .|...++..++ .++|...|+.++...|++ ....=+++.|+...+..+++++
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCHHH
Confidence 88888889999999999992 22 34455555555 778999999999998666 3344578889999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHH
Q 000307 1371 AAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAID 1450 (1690)
Q Consensus 1371 ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYD 1450 (1690)
|+.++.. +. +..+.+.++ .++||+|.. +|+.++|..+|+
T Consensus 104 Al~~L~~-------------------------~~---~~~~~~~~~-----------~~~Gdi~~~--~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQ-------------------------IP---DEAFKALAA-----------ELLGDIYLA--QGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHh-------------------------cc---CcchHHHHH-----------HHHHHHHHH--CCCHHHHHHHHH
Confidence 8888732 10 011122333 789999999 999999999999
Q ss_pred HHH
Q 000307 1451 AAL 1453 (1690)
Q Consensus 1451 kAL 1453 (1690)
+||
T Consensus 143 ~Al 145 (145)
T PF09976_consen 143 KAL 145 (145)
T ss_pred HhC
Confidence 996
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0029 Score=75.98 Aligned_cols=290 Identities=15% Similarity=0.077 Sum_probs=191.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
+...|..||..+.-|++..|++++.|.--+..|+..+.-+++.--.++.|++.|+-.+ =..|...|-.|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k-----------~~~r~~~c~~a 129 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK-----------GQLREGQCHLA 129 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------cccchhhhhhh
Confidence 4567999999999999999999999999999999999998888888999999976555 12233345444
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchh
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW 1207 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~Aw 1207 (1690)
+..+....... .+. +-| ...+|+.++.++-+ +.++ .
T Consensus 130 ~~~~i~A~~~~-~~~---------------~~~----~~anal~~~~~~~~----s~s~-~------------------- 165 (486)
T KOG0550|consen 130 LSDLIEAEEKL-KSK---------------QAY----KAANALPTLEKLAP----SHSR-E------------------- 165 (486)
T ss_pred hHHHHHHHHHh-hhh---------------hhh----HHhhhhhhhhcccc----cccC-C-------------------
Confidence 44442222222 111 111 23344444433332 2221 1
Q ss_pred HHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHH
Q 000307 1208 VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH 1287 (1690)
Q Consensus 1208 Lc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~ 1287 (1690)
-=...|+.|=...++..+...+|..+ ...+++.++.|+.|+.--+.=+|-
T Consensus 166 ---pac~~a~~lka~cl~~~~~~~~a~~e---a~~ilkld~~n~~al~vrg~~~yy------------------------ 215 (486)
T KOG0550|consen 166 ---PACFKAKLLKAECLAFLGDYDEAQSE---AIDILKLDATNAEALYVRGLCLYY------------------------ 215 (486)
T ss_pred ---chhhHHHHhhhhhhhhcccchhHHHH---HHHHHhcccchhHHHHhccccccc------------------------
Confidence 00234556667778888999999999 899999999999988766422222
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCcchh-------------HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc-hhHH
Q 000307 1288 IWCMAVLNGLECSMNLLEKYIKLYPSCLEL-------------VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQC 1353 (1690)
Q Consensus 1288 IRq~I~lEdse~al~LfdklLe~~P~d~eL-------------~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~-g~qc 1353 (1690)
+.+.+.+++-|.+.|.+.|.+-+. .+-+--+-+++--..|-..|.++|.++|.|+. -..|
T Consensus 216 ------~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 216 ------NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ------ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 113344445555666666665554 11122222233233566789999999999998 7778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHH
Q 000307 1354 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLS 1433 (1690)
Q Consensus 1354 aW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~ 1433 (1690)
.|++-+-+ +.-++..++|.-|.. |+. +. +-| +-++|--.
T Consensus 290 Y~nra~v~-~rLgrl~eaisdc~~--------------Al~--------iD---------~sy---------ikall~ra 328 (486)
T KOG0550|consen 290 YGNRALVN-IRLGRLREAISDCNE--------------ALK--------ID---------SSY---------IKALLRRA 328 (486)
T ss_pred HHHhHhhh-cccCCchhhhhhhhh--------------hhh--------cC---------HHH---------HHHHHHHH
Confidence 88876664 456688888888844 222 21 223 23677777
Q ss_pred HHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000307 1434 LHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1469 (1690)
Q Consensus 1434 Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYA 1469 (1690)
.+.++.+.++||..-|++|++..-+-.....|++=.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 778889999999999999999888754567777644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=83.33 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=128.3
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1374 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L 1374 (1690)
-..+++.=+..|...||.+++. .|+|.-.+..+-.++|...|+.++++.|++.. +|.-++..+.+.+++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHH
Confidence 4455555666778889999998 66666666666688999999999999999999 999999999999999999999
Q ss_pred HHH------------HHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHH--HHHHhhh
Q 000307 1375 MDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQ 1439 (1690)
Q Consensus 1375 ~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lq 1439 (1690)
+++ +-.+++-.+. .+++|++.+++...+.+. ..+ ++++. +|-. .
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~------~~~-------------~~~~~a~~l~~--~ 201 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE------FEN-------------GYVGWAQSLTR--R 201 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC------cHH-------------HHHHHHHHHHH--c
Confidence 988 5556665555 899999999977664421 112 34444 5666 7
Q ss_pred cChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh--------c--CCCCCCcccchhhhHHHHHHHHhh
Q 000307 1440 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLL--------I--NESEPKEGAPISWQLKLLNSYLDR 1498 (1690)
Q Consensus 1440 g~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS--------l--e~~dL~KAEqMS~~~KtVsTYLDT 1498 (1690)
|+.++|.+||++|+....+. ..-++||+.=|. + ++.--.+..++-.+.++|--|=|+
T Consensus 202 G~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 202 GALWRARDVLQAGLDAIGDG--ARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred CCHHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 99999999999999999987 566666654332 2 333344445555545666555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.004 Score=75.93 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcccc--CchhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhC----C-C----CchHHHHHHHHH
Q 000307 1032 EQCVEMALLILNQDA--NKLEGMKKALSLLSRAL---EADPTSEILWITYLLIFYSN----T-N----SVGKDDMFSYSV 1097 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~--n~~g~yDAALdLLsrAL---EINPtSAeaWyeyl~lY~~~----~-~----~~ea~emfekAV 1097 (1690)
+.||.-++.+--... ...+..++|+.+|.||+ ++||.-+.+|..++-.+..+ . . ..++.+..++||
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 788777755444443 34677899999999999 99999999988888777665 1 1 345678899999
Q ss_pred hcCCCCHH-H---HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000307 1098 KHNEGSYA-L---WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173 (1690)
Q Consensus 1098 elaP~NY~-L---w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL 1173 (1690)
+++|.|-. + +...-..+ .++.|+..|++...-+ |+- -+.+++..-+..+.|+.+.|+..+
T Consensus 332 eld~~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~-Pn~-------A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSG--------QAKVSHILFEQAKIHS-TDI-------ASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcC-Ccc-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999887 3 33333444 4777888887776666 887 899999999999999999999999
Q ss_pred Hhhc
Q 000307 1174 SRLL 1177 (1690)
Q Consensus 1174 ~rLE 1177 (1690)
++-.
T Consensus 396 ~~al 399 (458)
T PRK11906 396 DKSL 399 (458)
T ss_pred HHHh
Confidence 8844
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0019 Score=79.67 Aligned_cols=253 Identities=14% Similarity=0.052 Sum_probs=147.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|.+-.|.-+|.-|..-||..++||..|+..-....++..|...+++|++++|+|-. |+--|+|.+ .=.
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg--------~q~ 370 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG--------LQN 370 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--------hHH
Confidence 55677888899999999999999999999999999999999999999999999998 889999999 778
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHH-HhccCCcc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT-CLTISDKL 1204 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~-YLt~sDkc 1204 (1690)
.|+.+|+.-...+ |-..+ . ++...+.... ..++.-. ...+.+|+. ||.+.--.
T Consensus 371 ~Al~~L~~Wi~~~-p~y~~----------------l-------~~a~~~~~~~-~~~s~~~-~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 371 QALKMLDKWIRNK-PKYVH----------------L-------VSAGENEDFE-NTKSFLD-SSHLAHIQELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHHHhC-ccchh----------------c-------cccCcccccc-CCcCCCC-HHHHHHHHHHHHHHHHhC
Confidence 8999998876655 32200 0 0000000000 0001110 111222221 11100000
Q ss_pred chhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHH
Q 000307 1205 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA 1284 (1690)
Q Consensus 1205 ~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tK 1284 (1690)
.. .=+..-+.-+|-+|--.+..+.+.+. +..+|..+|++..-==.++
T Consensus 425 ~~----~~DpdvQ~~LGVLy~ls~efdraiDc---f~~AL~v~Pnd~~lWNRLG-------------------------- 471 (579)
T KOG1125|consen 425 PT----KIDPDVQSGLGVLYNLSGEFDRAVDC---FEAALQVKPNDYLLWNRLG-------------------------- 471 (579)
T ss_pred CC----CCChhHHhhhHHHHhcchHHHHHHHH---HHHHHhcCCchHHHHHHhh--------------------------
Confidence 00 00112233345555555555555555 4555555555443332222
Q ss_pred HHHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc----hh--HHHH
Q 000307 1285 VNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP----GI--QCIW 1355 (1690)
Q Consensus 1285 LN~IRq~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~----g~--qcaW 1355 (1690)
--.+ -+.+++|++-+.++|++.|.=+-. -|--.+|.+.. -++|+.-|..||.+-++... ++ --||
T Consensus 472 -----AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw 545 (579)
T KOG1125|consen 472 -----ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEAVKHLLEALSMQRKSRNHNKAPMASENIW 545 (579)
T ss_pred -----HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHHHHHHHHHHHhhhcccccccCCcchHHHH
Confidence 1122 236777777788888888877777 66666666555 66777777888887777322 11 1366
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 000307 1356 NQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1356 ~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
..|=..++.-++.|.+...+
T Consensus 546 ~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 546 QTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHcCCchHHHHhc
Confidence 44443444445555455544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.014 Score=70.50 Aligned_cols=330 Identities=12% Similarity=0.049 Sum_probs=199.0
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHH-HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhh
Q 000307 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHAS 1146 (1690)
Q Consensus 1068 tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw-~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~S 1146 (1690)
..+.++-+++.+-.-.-+..+.-.|-..+|...|.-.|+| |.|.-.. ..--.-.|.-+...+-+.-... +++
T Consensus 159 ecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq--~~~~~hs~a~~t~l~le~~~~l-r~N---- 231 (564)
T KOG1174|consen 159 ECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ--MFNFKHSDASQTFLMLHDNTTL-RCN---- 231 (564)
T ss_pred hcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH--HHhcccchhhhHHHHHHhhccC-Ccc----
Confidence 3566666777776666777788888889999998777755 3333222 0000003444444444444556 888
Q ss_pred hhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHH---HHhccCCccch--hHHH-HH-HHhhcc-
Q 000307 1147 ACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDIL---TCLTISDKLIF--WVCC-VY-LVIYRK- 1218 (1690)
Q Consensus 1147 a~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~---~YLt~sDkc~A--wLc~-iY-dl~Yrv- 1218 (1690)
.+++..++++|-..|++++||-+...-. ..++ ..+..|- .-|.+.-+|-- .|.| .+ ...|..
T Consensus 232 ---vhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dp--y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 232 ---EHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANP--DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred ---HHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCCh--hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence 9999999999999999999998654433 2333 2223333 33444444432 2222 22 111111
Q ss_pred ---ccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHH-------HHHH
Q 000307 1219 ---LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA-------VNHI 1288 (1690)
Q Consensus 1219 ---LPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tK-------LN~I 1288 (1690)
.-+.++....+-.-|+.+ -.+...-||.+.-+++-.+ ....+...-+..... =|.++-++ --++
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~---~eK~I~~~~r~~~alilKG-~lL~~~~R~~~A~Ia--FR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNF---VEKCIDSEPRNHEALILKG-RLLIALERHTQAVIA--FRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHH---HHHHhccCcccchHHHhcc-HHHHhccchHHHHHH--HHHHHhcchhhHHHHHHHH
Confidence 111111111222233333 2223333455554444443 222220111111111 22222222 1345
Q ss_pred HHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHH--HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 000307 1289 WCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKAR--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1365 (1690)
Q Consensus 1289 Rq~I~lEdse~al~LfdklLe~~P~d~eL-~L~Aay--L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~ 1365 (1690)
-+|.+.....+|+-+....|..-|.++.- .|+++- +-.--|-+.|...++..|.+.|...+ +=+-+++.....
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~----AV~~~AEL~~~E 451 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP----AVNLIAELCQVE 451 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH----HHHHHHHHHHhh
Confidence 56666558888888888899999998887 777543 33334455788899999999999999 888999988889
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHH
Q 000307 1366 GRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEA 1445 (1690)
Q Consensus 1366 e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EA 1445 (1690)
|.+..+|.|++++.. .+ +| |..--.|||++-- .+..+||
T Consensus 452 g~~~D~i~LLe~~L~--------------~~----------------~D---------~~LH~~Lgd~~~A--~Ne~Q~a 490 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLI--------------IF----------------PD---------VNLHNHLGDIMRA--QNEPQKA 490 (564)
T ss_pred CccchHHHHHHHHHh--------------hc----------------cc---------cHHHHHHHHHHHH--hhhHHHH
Confidence 999999999987321 11 23 1233688998888 9999999
Q ss_pred HHHHHHHHhhccCCcHHHHHHH
Q 000307 1446 RLAIDAALKAAASEHFKHCVRE 1467 (1690)
Q Consensus 1446 f~AYDkALk~np~N~~i~cLNN 1467 (1690)
.+-|-+||..+|.+ ...+.-
T Consensus 491 m~~y~~ALr~dP~~--~~sl~G 510 (564)
T KOG1174|consen 491 MEYYYKALRQDPKS--KRTLRG 510 (564)
T ss_pred HHHHHHHHhcCccc--hHHHHH
Confidence 99999999999988 666543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00029 Score=65.76 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchH
Q 000307 1049 LEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPt--SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~ 1122 (1690)
.++|+.|+-++.++++.+|+ ++.+|+.++.+|++.++-..|.+.+.+ .+++|.+.. ++..|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-------- 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-------- 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC--------
Confidence 37899999999999999996 578899999999999999999999999 888887755 888899999
Q ss_pred HHHHHHHHHHH
Q 000307 1123 AYDAALSVLCR 1133 (1690)
Q Consensus 1123 aYdrAI~aLe~ 1133 (1690)
.|++||.+|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999965
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.01 Score=71.68 Aligned_cols=276 Identities=10% Similarity=0.018 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHhcCCCCHHH
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEA-DPTSEILWITYLLIFYSNTNS--VGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEI-NPtSAeaWyeyl~lY~~~~~~--~ea~emfekAVelaP~NY~L 1106 (1690)
-++|=|--|-.+|-+ |++..|+.+|.--=.- |.+.+.+--.+..+|+-+++. ..++.+...||-.+-.|-.
T Consensus 418 a~dlei~ka~~~lk~-----~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~- 491 (840)
T KOG2003|consen 418 AIDLEINKAGELLKN-----GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA- 491 (840)
T ss_pred hhhhhhhHHHHHHhc-----cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH-
Confidence 335555556666655 6788888888644333 344455555555555444443 3455677777766644332
Q ss_pred HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1107 w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
++ .|++ -..-.--.|++|+++|-+..... ..- ++.|+-..--|...||.+.|+.-+.+|-. +--.+-
T Consensus 492 a~--~nkg-n~~f~ngd~dka~~~ykeal~nd-asc-------~ealfniglt~e~~~~ldeald~f~klh~--il~nn~ 558 (840)
T KOG2003|consen 492 AL--TNKG-NIAFANGDLDKAAEFYKEALNND-ASC-------TEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNA 558 (840)
T ss_pred Hh--hcCC-ceeeecCcHHHHHHHHHHHHcCc-hHH-------HHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhH
Confidence 11 1221 11111117999999995543322 222 77888888889999999999998776653 333443
Q ss_pred ccccHHHHHHHhccCCccch--hHHHHH-----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHH
Q 000307 1187 HSLFLSDILTCLTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1259 (1690)
Q Consensus 1187 ~~lSLsKi~~YLt~sDkc~A--wLc~iY-----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~ 1259 (1690)
+...+..-+|+.+.|...| ||.... +..-..-++++|++-|.+..||.. +-....-=|.|.-.+-=+|
T Consensus 559 -evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~---~ydsyryfp~nie~iewl~- 633 (840)
T KOG2003|consen 559 -EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC---HYDSYRYFPCNIETIEWLA- 633 (840)
T ss_pred -HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh---hhhcccccCcchHHHHHHH-
Confidence 5566666678888887777 777665 455555667777777777777776 2222222233333332232
Q ss_pred HHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHH
Q 000307 1260 NSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFE 1338 (1690)
Q Consensus 1260 dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe 1338 (1690)
.|| |-..=++.++++|++.--.-|.-..- +++|.-++..+--..|+..|.
T Consensus 634 ayy-----------------------------idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 634 AYY-----------------------------IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred HHH-----------------------------HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 232 21225788889999988888888877 777777777776778889999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHH
Q 000307 1339 EALIKWPKGVPGIQCIWNQYVEYA 1362 (1690)
Q Consensus 1339 ~aL~~~PkNa~g~qcaW~QLiq~A 1362 (1690)
++-..-|.+.. |+. -|+..+
T Consensus 685 ~~hrkfpedld---clk-flvri~ 704 (840)
T KOG2003|consen 685 DIHRKFPEDLD---CLK-FLVRIA 704 (840)
T ss_pred HHHHhCccchH---HHH-HHHHHh
Confidence 99999999988 554 344443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0021 Score=78.34 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
.+|--.|+.++.- +.+|.|+.+|.--+..-|+|+-.|-....++...++..+|.+++++|+.+.|++++ ++
T Consensus 307 aa~YG~A~~~~~~-----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLA-----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHh-----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4555555555543 67899999999999999999999999999999999999999999999999999998 66
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
.+|++.+ .+.+||..|-+..... |+. -+...+|++-|..+|+..+|..... |..+..|.-+
T Consensus 382 ~all~~g--------~~~eai~~L~~~~~~~-p~d-------p~~w~~LAqay~~~g~~~~a~~A~A--E~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGG--------KPQEAIRILNRYLFND-PED-------PNGWDLLAQAYAELGNRAEALLARA--EGYALAGRLE 442 (484)
T ss_pred HHHHhcC--------ChHHHHHHHHHHhhcC-CCC-------chHHHHHHHHHHHhCchHHHHHHHH--HHHHhCCCHH
Confidence 7788888 8889999998877777 777 7889999999999999888876443 3334666665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0054 Score=76.08 Aligned_cols=189 Identities=15% Similarity=0.069 Sum_probs=133.0
Q ss_pred HHHHHhccccCchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1037 MALLILNQDANKLEGMKKALSLLSRALEA--------DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1037 lAl~~Lnq~~n~~g~yDAALdLLsrALEI--------NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
+|-.|..+ |+|+.|..++.+||++ .|.=+...--++.+|..+++..+|..+|++|+..-...|.
T Consensus 205 La~~y~~~-----g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 205 LAEMYAVQ-----GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHh-----ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444444 8899999999999999 7776777777999999999999999999999987754444
Q ss_pred ---------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1106 ---------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1106 ---------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
|+-.|.+. ..|++...=|++|+..++...... +.+ +--.|..+..+++..++++.|+. |
T Consensus 280 ~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~-~~~------v~~~l~~~~~~~~~~~~~Eea~~----l 347 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGAS-HPE------VAAQLSELAAILQSMNEYEEAKK----L 347 (508)
T ss_pred HHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccC-hHH------HHHHHHHHHHHHHHhcchhHHHH----H
Confidence 45555444 588888889999999998855544 222 35567778889999999999998 5
Q ss_pred cccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh--------hh
Q 000307 1177 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD--------EK 1248 (1690)
Q Consensus 1177 Eq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd--------EP 1248 (1690)
++ + .+..+..+....+-+++. +..=+|.+|..-|+.+||..+ +.+.+.. ++
T Consensus 348 ~q--------~--al~i~~~~~g~~~~~~a~--------~~~nl~~l~~~~gk~~ea~~~---~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 348 LQ--------K--ALKIYLDAPGEDNVNLAK--------IYANLAELYLKMGKYKEAEEL---YKKAIQILRELLGKKDY 406 (508)
T ss_pred HH--------H--HHHHHHhhccccchHHHH--------HHHHHHHHHHHhcchhHHHHH---HHHHHHHHHhcccCcCh
Confidence 54 2 222333333333334443 333457788888999998887 5555332 45
Q ss_pred hhHHHHHHHHHHHHH
Q 000307 1249 QRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1249 dnalAL~smA~dYY~ 1263 (1690)
..+..+--||.+|++
T Consensus 407 ~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEE 421 (508)
T ss_pred hhhHHHHHHHHHHHH
Confidence 555666666655555
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0031 Score=59.86 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH-------HHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY-------~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
+.++|..+..+...++..++.+.|+++++..|++. .++..|...+ .|+.|+..|......+ |+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~-p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKY-PKS 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHC-CCC
Confidence 46889999999999999999999999999998762 2888999999 9999999999988766 442
Q ss_pred chhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1143 MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1143 ~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
....++++.+..+|...|++++|+..+.++..
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 73 ----PKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred ----CcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 12267899999999999999999999998885
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00061 Score=61.22 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
++|+.|+.++.++++++|+++.+|+.++.+|...+...+|.+.|+++++++|++-.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 67899999999999999999999999999999999999999999999999997766
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=76.49 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=91.4
Q ss_pred HHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhcCCCCHH----HHHHH
Q 000307 1036 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA----LWLMY 1110 (1690)
Q Consensus 1036 ~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-~~ea~emfekAVelaP~NY~----Lw~mY 1110 (1690)
|-||+-.-+.. -..+|+.|+.-..+.|+-||++-.+|++++..+...++ .+++.+.|..|++++|+|-- ||.+|
T Consensus 3 K~aLK~Ak~al-~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLy 81 (1238)
T KOG1127|consen 3 KTALKSAKDAL-RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLY 81 (1238)
T ss_pred hhHHHHHHHHH-hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 33444444433 12579999999999999999999999999999999999 89999999999999999976 88888
Q ss_pred HhcC--CCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000307 1111 INSR--TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173 (1690)
Q Consensus 1111 INsr--~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL 1173 (1690)
-.-. ..+++--..|.+++..|++.-... -+..---..|...+.-+++.++..+.+-+.+.
T Consensus 82 e~~~dIl~ld~~~~~yq~~~l~le~q~~nk---~~~lcKk~~d~~~~fk~hll~a~eigei~~tr 143 (1238)
T KOG1127|consen 82 ERYNDILDLDRAAKCYQRAVLILENQSKNK---GEALCKKFDDQYYQFKKHLLVAKEIGEIAVTR 143 (1238)
T ss_pred HccchhhhhhHhHHHHHHHHHhhhhhhhhH---HHHHHHHHhhHHHHHHHHHHhhHHHHHHHhch
Confidence 7622 334455556677776665443110 00001112344455555556666666666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0033 Score=75.68 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aY 1124 (1690)
.++-.+|+.+|.++-.+=|++|.++..++.+|-+-+.++.+-++.-....|-|.|.. |+.+||... -.
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq--------f~ 642 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ--------FS 642 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH--------HH
Confidence 455678899999999999999999999999998888888888877777888888875 889999999 88
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
++||..||+.+--. |.. .-+-++.+-|+.++|||++|+.++..+-
T Consensus 643 ekai~y~ekaaliq-p~~-------~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 643 EKAINYFEKAALIQ-PNQ-------SKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHHhcC-ccH-------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999998877766 665 6677888999999999999999876655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=77.07 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=72.2
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~ 1102 (1690)
-|+..+.+.++|+.+|.-++.. |+++.|+..|.+||+++|+.+.+|+.++.+|+.++...+|...|++|++++|+
T Consensus 28 Al~~~P~~~~a~~~~a~~~~~~-----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 28 AIDLDPNNAELYADRAQANIKL-----GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 4556667789999999888776 88999999999999999999999999999999999999999999999999999
Q ss_pred CHHH
Q 000307 1103 SYAL 1106 (1690)
Q Consensus 1103 NY~L 1106 (1690)
+..+
T Consensus 103 ~~~~ 106 (356)
T PLN03088 103 DSRF 106 (356)
T ss_pred CHHH
Confidence 8873
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0069 Score=62.18 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcc
Q 000307 1049 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLN 1118 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~d 1118 (1690)
.++.+++-..+...++-+|.+ .-+++.++..++..+.-+++.+.|+.+++..|+... |+.+|+..+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~---- 99 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG---- 99 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----
Confidence 355677777888889999998 788999999999999999999999999999876643 899999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1119 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
.|++|+..|... ... +-. -.+...+.++|...|++++|+..+.
T Consensus 100 ----~~d~Al~~L~~~-~~~-~~~-------~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 100 ----QYDEALATLQQI-PDE-AFK-------ALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred ----CHHHHHHHHHhc-cCc-chH-------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999552 111 112 3466679999999999999998653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0053 Score=66.11 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHH
Q 000307 1059 LSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCR 1133 (1690)
Q Consensus 1059 LsrALEIN-PtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~ 1133 (1690)
|.-...+. ++.=+..|.|+-.+++.++-.+|..+|+.++.++|.|+. |+.+|...+ .|.+||.+|..
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~ 94 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGR 94 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 33445677 777788888888888888888888888888888888766 788888888 88888888877
Q ss_pred hhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1134 CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1134 las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
...-. ++- -...+.+.++|.+-|+.++|+..+..-..
T Consensus 95 A~~L~-~dd-------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 95 AAQIK-IDA-------PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHhcC-CCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766 666 67788888888888888888886665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0044 Score=70.96 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=84.3
Q ss_pred CHHHHHHHHHH-HHhCCCCchHHHHHHHHHhcCCCC-------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCC
Q 000307 1069 SEILWITYLLI-FYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1140 (1690)
Q Consensus 1069 SAeaWyeyl~l-Y~~~~~~~ea~emfekAVelaP~N-------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~p 1140 (1690)
++..+|..+.- +...+...++...|++.++..|++ |||+..|.+.+ .|+.|+..|...+..+ |
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--------~~~~A~~~f~~vv~~y-P 211 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--------KKDDAAYYFASVVKNY-P 211 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-C
Confidence 45788888774 466788889999999999999987 77999999999 9999999999999888 5
Q ss_pred CcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1141 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1141 Dr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+ |...-|.++.+..+|...|++++|+.++..+..
T Consensus 212 ~----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 K----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred C----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 234589999999999999999999999988874
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0029 Score=76.27 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
+.++-||-.++.. ++-.+|+.++.++|..+|.+++++...+.++..+++.+.|...+.+||++.|+++. |+
T Consensus 201 ev~~~LA~v~l~~-----~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 201 EVAVLLARVYLLM-----NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred cHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 5566666555543 22378999999999999999999999999999999999999999999999999997 88
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhc
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1137 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~ 1137 (1690)
..||..+ .|+.||.++..+.-.
T Consensus 276 ~~Yi~~~--------d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 276 ECYIQLG--------DFENALLALNSCPML 297 (395)
T ss_pred HHHHhcC--------CHHHHHHHHhcCcCC
Confidence 9999999 999999999776544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.11 Score=66.99 Aligned_cols=336 Identities=12% Similarity=0.014 Sum_probs=185.3
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHhcC
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-------SVGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-------~~ea~emfekAVela 1100 (1690)
++...+|++.+-..++-..+ +.-..+..+|.+|| .|-.+..+|.+|+.|++..++ ....+..|++|.+..
T Consensus 144 pl~~~lWl~Wl~d~~~mt~s--~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 144 PLPPHLWLEWLKDELSMTQS--EERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred CCChHHHHHHHHHHHhhccC--cchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 35558999998777766555 66788999999998 477899999999999998776 334568899999987
Q ss_pred CCCHH----HHHHHHhcCCCcccchHHHHH----HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHh---------hh
Q 000307 1101 EGSYA----LWLMYINSRTPLNHRLDAYDA----ALSVLCRCASASDGDEMHASACILDLFLQMLQCFC---------MS 1163 (1690)
Q Consensus 1101 P~NY~----Lw~mYINsr~s~ddrl~aYdr----AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~---------qS 1163 (1690)
-.-++ +|.||+... ..+.|.. .+.++..--... +|.-..--+++- +.
T Consensus 221 g~~~t~G~~~we~~~E~e-----~~~l~n~~~~qv~a~~~~el~~~-----------~D~~~~~~~~~~~sk~h~~~~~~ 284 (881)
T KOG0128|consen 221 GSHITEGAAIWEMYREFE-----VTYLCNVEQRQVIALFVRELKQP-----------LDEDTRGWDLSEQSKAHVYDVET 284 (881)
T ss_pred hhhhcccHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhcc-----------chhhhhHHHHHHHHhcchHHHHh
Confidence 54454 999999987 3334433 444443322222 343333444443 44
Q ss_pred cCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch-------hHHHHH-HHhhccccHHHHhhccchhhhhc
Q 000307 1164 GNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-------WVCCVY-LVIYRKLPDAVLQLLECEKELFA 1235 (1690)
Q Consensus 1164 GnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A-------wLc~iY-dl~YrvLPGd~y~qne~~KEAf~ 1235 (1690)
.++++|+.++..++. ..-... +.--.+.+.|+..-|-|+. .|...= ..++..-++.|+...=-...-|.
T Consensus 285 ~~~~~a~~~l~~~~~--~~e~~~-q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLk 361 (881)
T KOG0128|consen 285 KKLDDALKNLAKILF--KFERLV-QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELK 361 (881)
T ss_pred ccHHHHHHHHHHHHH--HHHHHh-hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccc
Confidence 788888888777775 222233 3334456666666565555 222222 55555556666554322222233
Q ss_pred CCCC----CcccchhhhhhHHHHHHHHHHHHHhhcCCcchh-hhhcccch----------------hHHHHHHHHHHHH-
Q 000307 1236 IDWP----PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE-KETNLRSA----------------HCFAVNHIWCMAV- 1293 (1690)
Q Consensus 1236 I~W~----yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla-~~~n~k~d----------------~~tKLN~IRq~I~- 1293 (1690)
++=. +...+. .|-....|++-|.=..+ -+.++.. ..++...+ .|+++-....|-.
T Consensus 362 v~~~~~~~~~ra~R-~cp~tgdL~~rallAle--R~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~l 438 (881)
T KOG0128|consen 362 VPQRGVSVHPRAVR-SCPWTGDLWKRALLALE--RNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSL 438 (881)
T ss_pred cccccccccchhhc-CCchHHHHHHHHHHHHH--hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHH
Confidence 2000 221111 22233444444311111 1111110 00000000 1222211112221
Q ss_pred hcchHHHHHHHHHHHHh--CCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHH-HHHHHHHHHHhcCChh
Q 000307 1294 LNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC-IWNQYVEYALQNGRHD 1369 (1690)
Q Consensus 1294 lEdse~al~LfdklLe~--~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qc-aW~QLiq~Al~~e~~d 1369 (1690)
-+.+..|..+|..++.. .+.+..+ +-.-.++...+-.+.++.+|..++.-- .|--. .|.++++.-.+-++..
T Consensus 439 r~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~----~~~iag~Wle~~~lE~~~g~~~ 514 (881)
T KOG0128|consen 439 RAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG----GGSIAGKWLEAINLEREYGDGP 514 (881)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC----cchHHHHHHHHHhHHHHhCCch
Confidence 12677777777777765 4555555 333334544444667777776665432 22233 8999999999888888
Q ss_pred HHHHHHHHHHHHHhhhcc-cccccchhhc
Q 000307 1370 FAAELMDRWFHSVWKVQY-SQVEISDPLV 1397 (1690)
Q Consensus 1370 ~ai~L~~~ff~gia~~Q~-~~deALD~lr 1397 (1690)
.+..+ .-.||.|. ..+++++++.
T Consensus 515 ~~R~~-----~R~ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 515 SARKV-----LRKAYSQVVDPEDALEVLE 538 (881)
T ss_pred hHHHH-----HHHHHhcCcCchhHHHHHH
Confidence 77664 44566666 4444555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.022 Score=68.77 Aligned_cols=271 Identities=16% Similarity=0.086 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---HHHHHHhcCCCcccchHHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDA 1126 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---Lw~mYINsr~s~ddrl~aYdr 1126 (1690)
-.+..+.-++-+-+..-|.+.-+...++.+|+..|...++..-|+++--.+|++-. +.-|.+..+ ++ |++
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e----g~---~e~ 284 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE----GG---CEQ 284 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc----cC---Hhh
Confidence 33566778888888889999999999999999999999999999999999998877 666666665 22 333
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1127 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1127 AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
--.+-|.+-+.. +.+++.| |... +++--.++|.-|+.--.+ ++.... + .+..|++.|.--++
T Consensus 285 ~~~L~~~Lf~~~---~~ta~~w----fV~~-~~l~~~K~~~rAL~~~eK----~I~~~~-r-----~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 285 DSALMDYLFAKV---KYTASHW----FVHA-QLLYDEKKFERALNFVEK----CIDSEP-R-----NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhhh---hcchhhh----hhhh-hhhhhhhhHHHHHHHHHH----HhccCc-c-----cchHHHhccHHHHh
Confidence 323333333322 1223333 3332 333345666666652222 222222 3 35555555543333
Q ss_pred ---------------hHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcch
Q 000307 1207 ---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1271 (1690)
Q Consensus 1207 ---------------wLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsl 1271 (1690)
.|+-.-+=.|+-|-- -|+-.|+.|||..+ -..+.+.=|++|-+|-=.+.+-+-.+.-.-+.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h-sYLA~~~~kEA~~~---An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFH-SYLAQKRFKEANAL---ANWTIRLFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHH-HHHhhchHHHHHHH---HHHHHHHhhcchhhhhhhcceeeccCchhHHH
Confidence 121001334555543 46667888888776 55555566666544433221222110000111
Q ss_pred hhhh---cccc--hhHHHHHHHHHHHHhc-chHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCC
Q 000307 1272 EKET---NLRS--AHCFAVNHIWCMAVLN-GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWP 1345 (1690)
Q Consensus 1272 a~~~---n~k~--d~~tKLN~IRq~I~lE-dse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~P 1345 (1690)
++.. +.+. .---+|+.+.-+-.-| .-+-++.|++++|+-+|+|.==...+..|...+|+.+|+..|..||.++|
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 1111 1111 1222345555555544 66779999999999999765439999999999999999999999999999
Q ss_pred CCCc
Q 000307 1346 KGVP 1349 (1690)
Q Consensus 1346 kNa~ 1349 (1690)
++..
T Consensus 503 ~~~~ 506 (564)
T KOG1174|consen 503 KSKR 506 (564)
T ss_pred cchH
Confidence 9988
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0017 Score=78.91 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=67.3
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAea---Wyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
++.|.+.++|+.++.-+... |+|+.|+..|++||++||+++++ ||.++-.|..++..++|.+.|++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l-----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK-----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45677889999999988776 89999999999999999999965 99999999999999999999999999854
Q ss_pred CCH
Q 000307 1102 GSY 1104 (1690)
Q Consensus 1102 ~NY 1104 (1690)
..|
T Consensus 144 ~~f 146 (453)
T PLN03098 144 LKF 146 (453)
T ss_pred hhH
Confidence 444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.036 Score=69.01 Aligned_cols=232 Identities=13% Similarity=0.123 Sum_probs=150.6
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHH
Q 000307 1074 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF 1153 (1690)
Q Consensus 1074 yeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvL 1153 (1690)
|+.+.-+++.|.-.+|-=.||.||+-+|....-|+. +..--+- ...=..||.+|.+..... |++ +++|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~-LG~~qaE---NE~E~~ai~AL~rcl~Ld-P~N-------leaL 356 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQK-LGITQAE---NENEQNAISALRRCLELD-PTN-------LEAL 356 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHH-hhhHhhh---ccchHHHHHHHHHHHhcC-Ccc-------HHHH
Confidence 566667777888888888999999999998885543 2211001 114467999999988887 999 9999
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+-|+=.|.=+|.-..|+..|+.-.. .++ -- .+......++.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~-----~~p--------------------------~y--------~~l~~a~~~~~ 397 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIR-----NKP--------------------------KY--------VHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH-----hCc--------------------------cc--------hhccccCcccc
Confidence 9999888888888888875544332 121 10 11111122222
Q ss_pred hcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q 000307 1234 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS 1313 (1690)
Q Consensus 1234 f~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~ 1313 (1690)
+.- .... .+++.. +.+.+ -|.++ ..+.... ...++...|-+ .|-+..+++.++.-|..+|...|.
T Consensus 398 ~~~---~~s~--~~~~~l-~~i~~--~fLea-a~~~~~~----~DpdvQ~~LGV--Ly~ls~efdraiDcf~~AL~v~Pn 462 (579)
T KOG1125|consen 398 FEN---TKSF--LDSSHL-AHIQE--LFLEA-ARQLPTK----IDPDVQSGLGV--LYNLSGEFDRAVDCFEAALQVKPN 462 (579)
T ss_pred ccC---CcCC--CCHHHH-HHHHH--HHHHH-HHhCCCC----CChhHHhhhHH--HHhcchHHHHHHHHHHHHHhcCCc
Confidence 222 1111 122221 22211 12221 2221111 12223333331 122344889999999999999999
Q ss_pred cchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1314 CLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1314 d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
|.-| -=++|-|.-.+-.++|+.+|.+||++-|.-+. +|+-|.-..+..|-|.+|++.+
T Consensus 463 d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR----~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 463 DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR----VRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee----eehhhhhhhhhhhhHHHHHHHH
Confidence 9999 55566666666689999999999999999999 9999988889999999998766
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0024 Score=72.61 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=89.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhc--CCCCHH--------HHHHHHhc-CCC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA--------LWLMYINS-RTP 1116 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVel--aP~NY~--------Lw~mYINs-r~s 1116 (1690)
+...|..|-.++.+ +.....++.+|..-+.+|... ...++.+++++|+++ .-+++. ++.+|.+. +
T Consensus 54 A~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-- 129 (282)
T PF14938_consen 54 AAEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-- 129 (282)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT---
T ss_pred hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--
Confidence 34444444444444 222334566677777776555 888899999999986 223444 77777777 6
Q ss_pred cccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc----ccccHH
Q 000307 1117 LNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR----HSLFLS 1192 (1690)
Q Consensus 1117 ~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE----~~lSLs 1192 (1690)
.|++|++.|.+.+.-+..+. ......+++..++.+|...|+|++||..+.++-...++...- +...+.
T Consensus 130 ------d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 130 ------DYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 78888888877666542222 456778999999999999999999999998876422222211 123344
Q ss_pred HHHHHhccCCc
Q 000307 1193 DILTCLTISDK 1203 (1690)
Q Consensus 1193 Ki~~YLt~sDk 1203 (1690)
.+..||.++|-
T Consensus 202 a~l~~L~~~D~ 212 (282)
T PF14938_consen 202 AILCHLAMGDY 212 (282)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHHcCCH
Confidence 55555555553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.014 Score=72.71 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=88.1
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--------CchHHHHHHHHHhc--CCCC---HH-HHHHHHhc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN--------SVGKDDMFSYSVKH--NEGS---YA-LWLMYINS 1113 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~--------~~ea~emfekAVel--aP~N---Y~-Lw~mYINs 1113 (1690)
..+.+.+|..+|.+|+++||+.+.+|-.++..|..+.. -..+.+..++|+.+ +|.. |. ++.+++..
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 36778999999999999999999999998876655422 12334555666554 4433 33 77888888
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+ .+++|...|++..+.+ ++ -+.+..+..+|..+|+++.|+.-+.+-..
T Consensus 434 g--------~~~~A~~~l~rAl~L~-ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 434 G--------KTDEAYQAINKAIDLE-MS--------WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred C--------CHHHHHHHHHHHHHcC-CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8 9999999998887776 43 46899999999999999999998877554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.021 Score=64.52 Aligned_cols=143 Identities=12% Similarity=0.107 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHH
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW---ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaW---yeyl~lY~~~~~~~ea~emfekAVelaP~NY~L 1106 (1690)
+.+.+-..|...+.. |+|++|+..|..+++..|.++.+- +.++..|++.++..+|...|++.++..|++-..
T Consensus 31 ~~~~~Y~~A~~~~~~-----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQD-----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 455666777777765 889999999999999999988776 999999999999999999999999999999763
Q ss_pred H-------HHHHhcC---------CCcccchHHH-HHHHHHHHHhhhcCCCCcchh---hhhh-------HHHHHHHHHH
Q 000307 1107 W-------LMYINSR---------TPLNHRLDAY-DAALSVLCRCASASDGDEMHA---SACI-------LDLFLQMLQC 1159 (1690)
Q Consensus 1107 w-------~mYINsr---------~s~ddrl~aY-drAI~aLe~las~~~pDr~~~---Sa~I-------LDvLL~LvqL 1159 (1690)
- ..+.... ....+|+... .+|+..|.++...+ |+-... -..| -+-=+..+.+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2221111 1123344443 67999999999999 773222 1122 2223456778
Q ss_pred HhhhcCHHHHHHHHHhhcc
Q 000307 1160 FCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1160 Y~qSGnydKAI~tL~rLEq 1178 (1690)
|...|+|.-||.++..+..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHcCchHHHHHHHHHHHH
Confidence 9999999999999988875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.2 Score=62.77 Aligned_cols=269 Identities=15% Similarity=0.082 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
++|..-+.++.--||.||=.+..+-..+..++..++..+--.+=-+-|+..|.+-- ++.+|+-.+ .|+
T Consensus 258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~--------k~s 329 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG--------KYS 329 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc--------CcH
Confidence 34455555555555555555555555444555555555433333334444444322 555555555 555
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|-..| +++.--|.+..-|| +...+-|.-.|..++||+.+.+==+ --.|+... ..---+ .|-.+ .-
T Consensus 330 eARry~---SKat~lD~~fgpaW-----l~fghsfa~e~EhdQAmaaY~tAar-l~~G~hlP-~LYlgm-ey~~t---~n 395 (611)
T KOG1173|consen 330 EARRYF---SKATTLDPTFGPAW-----LAFGHSFAGEGEHDQAMAAYFTAAR-LMPGCHLP-SLYLGM-EYMRT---NN 395 (611)
T ss_pred HHHHHH---HHHhhcCccccHHH-----HHHhHHhhhcchHHHHHHHHHHHHH-hccCCcch-HHHHHH-HHHHh---cc
Confidence 555555 22221222222222 2445555555555555554432111 01133321 110001 11111 12
Q ss_pred hhHHHHH-HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHH
Q 000307 1206 FWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA 1284 (1690)
Q Consensus 1206 AwLc~iY-dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tK 1284 (1690)
..|+..| ...|.+-|-+-+.-++.--=+|.. .+-.-|...|..|+.-... .+. +++ -=-+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~---------~~y~~A~~~f~~~l~~ik~-~~~--------e~~-~w~p 456 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTY---------EEYPEALKYFQKALEVIKS-VLN--------EKI-FWEP 456 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehH---------hhhHHHHHHHHHHHHHhhh-ccc--------ccc-chhH
Confidence 2445555 445555555555444422222222 3444455556655322221 111 121 1112
Q ss_pred H-HHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 000307 1285 V-NHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 1360 (1690)
Q Consensus 1285 L-N~IRq~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq 1360 (1690)
+ +-|-.... +...++|+..|++.|.+.|.+++. .+.--|..+++ .+.|+.-|.++|-+.|+|.- +. +++.
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKaL~l~p~n~~----~~-~lL~ 530 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKALALKPDNIF----IS-ELLK 530 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhcCCccHH----HH-HHHH
Confidence 2 22333333 457789999999999999999999 66666777777 88999999999999999976 43 5666
Q ss_pred HHHhc
Q 000307 1361 YALQN 1365 (1690)
Q Consensus 1361 ~Al~~ 1365 (1690)
.|++.
T Consensus 531 ~aie~ 535 (611)
T KOG1173|consen 531 LAIED 535 (611)
T ss_pred HHHHh
Confidence 66654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0092 Score=62.82 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH-----H--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1066 DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-----A--LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1066 NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY-----~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
+|..+.+++.++.+|...+...+|.++|++|++..|+.. + ++.+|...+ .|++|+.+|.+.....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDKALEYYHQALELN 102 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC
Confidence 345677889999999999999999999999999876532 2 788888888 9999999998888876
Q ss_pred CCCcchhhhhhHHHHHHHHHHHhhhcC
Q 000307 1139 DGDEMHASACILDLFLQMLQCFCMSGN 1165 (1690)
Q Consensus 1139 ~pDr~~~Sa~ILDvLL~LvqLY~qSGn 1165 (1690)
|+. .+.+..+..+|...|+
T Consensus 103 -p~~-------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 103 -PKQ-------PSALNNIAVIYHKRGE 121 (172)
T ss_pred -ccc-------HHHHHHHHHHHHHcCC
Confidence 666 6667777888887776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.014 Score=66.86 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~e-a~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
.++.++|-.+|.+|++-.+....+|..+|.+.+...++.. |...||.|++.-|.+..+|+.||+.-..+ ...+.|
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~----~d~~~a 89 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL----NDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT----T-HHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh----CcHHHH
Confidence 3568999999999998888999999999999888656555 99999999999999999999999876433 357888
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
-.+||+..+.- +... . .-.++-..+++-..-|+++.+.....|+.+
T Consensus 90 R~lfer~i~~l-~~~~-~---~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 90 RALFERAISSL-PKEK-Q---SKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHCCTS-SCHH-H---CHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-Cchh-H---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999887775 4431 1 345677778888888999988887767665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0042 Score=58.09 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHHhcCCCC----HH--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH
Q 000307 1084 TNSVGKDDMFSYSVKHNEGS----YA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML 1157 (1690)
Q Consensus 1084 ~~~~ea~emfekAVelaP~N----Y~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~Lv 1157 (1690)
+.-+.|..+|+++++.+|.+ |+ ++..|..++ .|++|+.++.+ .... +.. .+..+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--------~y~~A~~~~~~-~~~~-~~~-------~~~~~l~a 65 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--------KYEEAIELLQK-LKLD-PSN-------PDIHYLLA 65 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--------HHHHHHHHHHC-HTHH-HCH-------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--------CHHHHHHHHHH-hCCC-CCC-------HHHHHHHH
Confidence 44567889999999999965 44 599999999 99999999977 3333 444 67888889
Q ss_pred HHHhhhcCHHHHHHHHHh
Q 000307 1158 QCFCMSGNTEKAIQRISR 1175 (1690)
Q Consensus 1158 qLY~qSGnydKAI~tL~r 1175 (1690)
++|...|+|++||..|.+
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 999999999999998764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.21 Score=62.24 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=75.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
.+|+|+.|+.+|..|+.++|++.++|..-+..|...++-+++..--.++++++|+=-. ++.-.+..+ .
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg--------~ 85 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG--------D 85 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc--------c
Confidence 5799999999999999999999999999999999999999999999999999974111 777777888 9
Q ss_pred HHHHHHHHHHhhhcCCCCc
Q 000307 1124 YDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr 1142 (1690)
|++|+.+|.+.-+.. |++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n 103 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSN 103 (539)
T ss_pred HHHHHHHHHHHhhcC-Cch
Confidence 999999998777766 665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0066 Score=74.16 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHH-HHHhcCCCcccchHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWL-MYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~-mYINsr~s~ddrl~a 1123 (1690)
++++.|+.+|.+|+++||+.+-+||.++.+-.-.+..++|.+.+++|++++|--.. ||. ||...+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~--------- 422 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP--------- 422 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc---------
Confidence 55899999999999999999999999999999999999999999999999997766 898 999888
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhh-hhHHHHHHHHHHH
Q 000307 1124 YDAALSVLCRCASASDGDEMHASA-CILDLFLQMLQCF 1160 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa-~ILDvLL~LvqLY 1160 (1690)
.+.||.+| ++.. +..|+ -|.|-++.|-||-
T Consensus 423 ~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~ 453 (458)
T PRK11906 423 LKNNIKLY---YKET----ESESHRVIIDNILKLKQLT 453 (458)
T ss_pred hhhhHHHH---hhcc----ccccchhhHHHHHHHHHHH
Confidence 78999999 3333 11233 5778888777763
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0073 Score=69.17 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=103.5
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCC--ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1286 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD--LSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1286 N~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e--~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
.+|+++...++.+.++.+|.++++..+.+-++.+..|.|......+ .|..+||.++..-|++.. .|+.||.+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~ 81 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHH
Confidence 5666666677999999999999988788889988889986663233 378999999999999999 9999999999
Q ss_pred hcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHH--HHHHhhhcC
Q 000307 1364 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQND 1441 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lqg~ 1441 (1690)
..++.+.|..|.++.... ++ .+.. + ..||+ +-|+.-.|+
T Consensus 82 ~~~d~~~aR~lfer~i~~---------------------l~--------~~~~------~----~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISS---------------------LP--------KEKQ------S----KKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT---------------------SS--------CHHH------C----HHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHh---------------------cC--------chhH------H----HHHHHHHHHHHHHcCC
Confidence 999999999988772111 11 1210 1 34455 556667899
Q ss_pred hHHHHHHHHHHHhhccC-CcHHHHHHHH
Q 000307 1442 WNEARLAIDAALKAAAS-EHFKHCVREH 1468 (1690)
Q Consensus 1442 ~~EAf~AYDkALk~np~-N~~i~cLNNY 1468 (1690)
.+.....++++..+-|. +.+...++.|
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999985 5455555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=63.35 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---- 1105 (1690)
+-+.--.+|+..+.+ |+++.|..+|.-...+||.++.-||-|+..+-.++.-.+|.++|.+|..++|+++.
T Consensus 34 ~l~~lY~~A~~ly~~-----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEV-----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 346777888888887 89999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHh
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~l 1134 (1690)
++..|+..+ +.+.|..+|...
T Consensus 109 ag~c~L~lG--------~~~~A~~aF~~A 129 (157)
T PRK15363 109 AAECYLACD--------NVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHcC--------CHHHHHHHHHHH
Confidence 999999999 778888877543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0057 Score=54.58 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhc
Q 000307 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1137 (1690)
Q Consensus 1068 tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~ 1137 (1690)
++|.+|+.++.+|+..++-.+|..+|++|++++|++.. ++..|..++ ..|++|+..|....+.
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999998877 777888875 1588888888765544
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.51 E-value=2.1 Score=54.33 Aligned_cols=378 Identities=17% Similarity=0.121 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhcCCCCHH---HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA---LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-~~ea~emfekAVelaP~NY~---Lw 1107 (1690)
-.|.+.|..= -+.|....+..+|.||+..=|.+..+|.+|...-...-. ++..++.|++|+.+.--.|. ||
T Consensus 80 gyW~kfA~~E-----~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 80 GYWKKFADYE-----YKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred HHHHHHHHHH-----HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHH
Confidence 5566666542 346888999999999999999999999999988655433 55678999999999988888 99
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhh------cCHHHHHHHHHhhcc-cc
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS------GNTEKAIQRISRLLI-PA 1180 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qS------GnydKAI~tL~rLEq-~A 1180 (1690)
-.||..+ -+-..+.+-..+|++.-+.- .|. ++.++....=+..+ -..+++++.-.-+.. -.
T Consensus 155 dkyie~e----n~qks~k~v~~iyeRileiP----~~~----~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~ 222 (577)
T KOG1258|consen 155 DKYIEFE----NGQKSWKRVANIYERILEIP----LHQ----LNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSK 222 (577)
T ss_pred HHHHHHH----hccccHHHHHHHHHHHHhhh----hhH----hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhh
Confidence 9999876 22225566666676665542 111 22222222111111 222222221000000 00
Q ss_pred cCCCCcccccHHHHHHHhccCCccch---hHHHHHHHhhccccHHHHhhcc--chhhh-hc--CCCCCcccchhhhhhHH
Q 000307 1181 TGSNDRHSLFLSDILTCLTISDKLIF---WVCCVYLVIYRKLPDAVLQLLE--CEKEL-FA--IDWPPVQLEDDEKQRAI 1252 (1690)
Q Consensus 1181 l~G~sE~~lSLsKi~~YLt~sDkc~A---wLc~iYdl~YrvLPGd~y~qne--~~KEA-f~--I~W~yvqvlkdEPdnal 1252 (1690)
+.=..+..-.++....+.|-.=+... .++.++..+ -..+|+... +.|.+ |+ |-=||.+|-..++.+..
T Consensus 223 ~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~----~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 223 ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI----HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH----HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 00000000011111111111111110 122222111 111222222 12222 22 33346666666665555
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHH-HHHHHhhccCCC
Q 000307 1253 KLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHDFGD 1331 (1690)
Q Consensus 1253 AL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L-~AayL~~k~m~e 1331 (1690)
..... ++|-.. . ....-+.+...||+| -|--=.+.+. ++.+|...+...
T Consensus 299 nw~~y-Ldf~i~-~-----------g~~~~~~~l~ercli-----------------~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 299 NWRYY-LDFEIT-L-----------GDFSRVFILFERCLI-----------------PCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HHHHH-hhhhhh-c-----------ccHHHHHHHHHHHHh-----------------HHhhhHHHHHHHHHHHHHcCchh
Confidence 55544 244332 1 122333344455555 3322233433 333455554333
Q ss_pred ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcccccccchhhccc
Q 000307 1332 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQYSQVEISDPLVAD 1399 (1690)
Q Consensus 1332 ~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~~~deALD~lr~g 1399 (1690)
-+-.++..+..+.-+-.++++ .++...-=..|+++.|+.++++ .+.-.+.+.+..-+........
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~---L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIH---LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHH---HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 444677777777766666433 3334444456788888888877 2222222222111111101111
Q ss_pred CCCCCCCCCCCCCcccccccccchhhhhHHHHH-HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000307 1400 MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1477 (1690)
Q Consensus 1400 ~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~ 1477 (1690)
.+.+.......-...++ ++.. =|.....++.++|+.+.-.|+...|++ .+.+-.|.-|......
T Consensus 426 ~s~~~~~~~~~~i~~~l------------~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~--k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKL------------YVKFARLRYKIREDADLARIILLEANDILPDC--KVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcccccCcchhHHH------------HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc--HHHHHHHHHHHHhCCc
Confidence 11111111111111212 2222 123345889999999999999999999 9999999988887653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.026 Score=65.49 Aligned_cols=225 Identities=15% Similarity=0.070 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCC
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1202 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sD 1202 (1690)
.|..+|..+. .....+... ++...++...|...|.++.+|.-| . ++.++.-..+.-+..|+...+
T Consensus 16 ~Y~~~i~e~~-~~~~~~~~~-------~e~~~~~~Rs~iAlg~~~~vl~ei---~----~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 16 NYQQCINEAS-LKSFSPENK-------LERDFYQYRSYIALGQYDSVLSEI---K----KSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp -HHHHCHHHH-CHTSTCHHH-------HHHHHHHHHHHHHTT-HHHHHHHS--------TTSSCCCHHHHHHHHHHCTST
T ss_pred hHHHHHHHhh-ccCCCchhH-------HHHHHHHHHHHHHcCChhHHHHHh---c----cCCChhHHHHHHHHHHHhCcc
Confidence 7899997665 333332234 778888888999999999887622 2 222432334455667777633
Q ss_pred -ccch------hHHHHH---HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchh
Q 000307 1203 -KLIF------WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1272 (1690)
Q Consensus 1203 -kc~A------wLc~iY---dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla 1272 (1690)
+..+ |+...+ ...++++-+-+|...|...+|+.+ +.+.-.-|. +.+++..|=. .|.-+++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~---l~~~~~lE~------~al~Vqi~L~-~~R~dlA 150 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKL---LHKGGSLEL------LALAVQILLK-MNRPDLA 150 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCC---CTTTTCHHH------HHHHHHHHHH-TT-HHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHH---HHccCcccH------HHHHHHHHHH-cCCHHHH
Confidence 2222 444443 345788888999999999999998 666522222 2222332322 4555555
Q ss_pred hhh---cccchhHHHH-HHHHHHH----HhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1273 KET---NLRSAHCFAV-NHIWCMA----VLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1273 ~~~---n~k~d~~tKL-N~IRq~I----~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
... -.+.+.+--+ ++.--.+ .-|....|.-.|+.+-+.+|..+.+ .+..++|++.+ -++|...++++|+
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~ 229 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 544 1222222222 2222222 2345788999999999998888877 67778888888 8888999999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRH-DFAAELMDR 1377 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~-d~ai~L~~~ 1377 (1690)
.+|++.. +..-+|-..+..|+. +.+-+...+
T Consensus 230 ~~~~~~d----~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 230 KDPNDPD----TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp C-CCHHH----HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hccCCHH----HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999877 555566666666666 444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.8 Score=59.44 Aligned_cols=319 Identities=11% Similarity=-0.011 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---------HHHHHH
Q 000307 1050 EGMKKALSLLSRALEADPT---------SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYI 1111 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPt---------SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---------Lw~mYI 1111 (1690)
++++.|..++.++++.-+. ..++...++.++...+...++..+++.|.+..|.... ++.+|.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 5678888888888765332 2344555677888899999999999999986554432 455666
Q ss_pred hcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccH
Q 000307 1112 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1191 (1690)
Q Consensus 1112 Nsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSL 1191 (1690)
..+ .|++|+..|++..... ... .......-.+..+..++..+|+++.|+..+.+....+.
T Consensus 503 ~~G--------~~~~A~~~~~~al~~~-~~~-g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~---------- 562 (903)
T PRK04841 503 CKG--------ELARALAMMQQTEQMA-RQH-DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIE---------- 562 (903)
T ss_pred HcC--------CHHHHHHHHHHHHHHH-hhh-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence 677 7777877776655433 111 11122344677888999999999999997655443110
Q ss_pred HHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcch
Q 000307 1192 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1271 (1690)
Q Consensus 1192 sKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsl 1271 (1690)
..+..........+ .+.+.++...|...+|... +..|...+.. .+.
T Consensus 563 -------~~~~~~~~~~~~~~-----~~la~~~~~~G~~~~A~~~------------------~~~al~~~~~-~~~--- 608 (903)
T PRK04841 563 -------EQHLEQLPMHEFLL-----RIRAQLLWEWARLDEAEQC------------------ARKGLEVLSN-YQP--- 608 (903)
T ss_pred -------HhccccccHHHHHH-----HHHHHHHHHhcCHHHHHHH------------------HHHhHHhhhc-cCc---
Confidence 01111111011111 1235555555655555443 2332222221 110
Q ss_pred hhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc---chh-----HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1272 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC---LEL-----VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1272 a~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d---~eL-----~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
......-..+-+......+.+.+...+++++...+.- ... .+...++...+-.+.+...+......
T Consensus 609 ------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 609 ------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 0000000111111122446777777777776653321 111 11223333333233333444443332
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccch
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1423 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~ 1423 (1690)
.+.......-++..+....+..+++++|..++++ +++......... ...-.+
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~--------------al~~~~~~g~~~-------~~a~~~------- 734 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEE--------------LNENARSLRLMS-------DLNRNL------- 734 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHhCchH-------HHHHHH-------
Confidence 2111110111244556666777888888887755 222221100000 000112
Q ss_pred hhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHH
Q 000307 1424 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1462 (1690)
Q Consensus 1424 d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i 1462 (1690)
..++.+|+. .|+.++|..++.+||.......+.
T Consensus 735 ----~~la~a~~~--~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 735 ----ILLNQLYWQ--QGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred ----HHHHHHHHH--cCCHHHHHHHHHHHHHHhCccchh
Confidence 456778888 999999999999999988876554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0063 Score=51.45 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL 1078 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~ 1078 (1690)
++|+.||..+... |+++.|..+|.++|+.+|+++++|+.|+.
T Consensus 2 ~~~~~la~~~~~~-----G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRL-----GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3566677666665 67777777777777777777777777764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.027 Score=58.95 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcccchH
Q 000307 1052 MKKALSLLSRALEADPTS--EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1052 yDAALdLLsrALEINPtS--AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~ddrl~ 1122 (1690)
|..+.+.|..-+..++.. +.+|+.++.++..++..+++...|++|+++.|+... ++.+|...+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------- 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------- 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------
Confidence 344455555544555555 778899999999999999999999999999876432 778889999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHh-------hhcCHHHHHHHHH
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-------MSGNTEKAIQRIS 1174 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~-------qSGnydKAI~tL~ 1174 (1690)
.+++|+.+|+...+.. ++. .+.+..+..+|. ..|+++.|+..++
T Consensus 87 ~~~eA~~~~~~Al~~~-~~~-------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 87 EHTKALEYYFQALERN-PFL-------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred CHHHHHHHHHHHHHhC-cCc-------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999998877766 766 455666666666 8888876655443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.048 Score=65.00 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=89.6
Q ss_pred hhhhchh-hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1023 KLKQVEL-SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1023 ~Le~~~~-d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
+++.-.. +.++||...+.+| |+|..|++++.-+.+-+--.+++|..++-.+...+...+|...-++|.+.-=
T Consensus 50 ~~~~EEE~~~~lWia~C~fhL-------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL 122 (557)
T KOG3785|consen 50 NLDREEEDSLQLWIAHCYFHL-------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPL 122 (557)
T ss_pred ccchhhhHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChH
Confidence 4444443 5699999998887 7899999999999998888999999999888888888888766666543221
Q ss_pred CCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1102 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1102 ~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+--|..+-...+ +-.+-+++-+.+ .|- +|=-|.|+-..-|.--|+.||.++.|+++
T Consensus 123 ~~RLlfhlahkln--------dEk~~~~fh~~L-----qD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 123 CIRLLFHLAHKLN--------DEKRILTFHSSL-----QDT-------LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHHhC--------cHHHHHHHHHHH-----hhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111333333333 444444444444 233 45556777777788889999999999997
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.16 Score=68.38 Aligned_cols=229 Identities=17% Similarity=0.210 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhc-CCCCcchhhhhhHHHHHHHHHHHhhhcCHHH
Q 000307 1090 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEK 1168 (1690)
Q Consensus 1090 ~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~-~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydK 1168 (1690)
.+-|++-|.-+|++--+|--|+..-..+.+ .++|-...|+.-.. +-.+ ..--|-+-..++.|..+-|.-+.
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsE----iekAR~iaerAL~tIN~RE----eeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSE----IEKARKIAERALKTINFRE----EEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhh----hHHHHHHHHHHhhhCCcch----hHHHHHHHHHHHhHHHhhCcHHH
Confidence 467999999999999999999886644443 34444444333221 1011 11226666777777777775555
Q ss_pred HHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhh
Q 000307 1169 AIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK 1248 (1690)
Q Consensus 1169 AI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEP 1248 (1690)
...++.|.-+ -.+ ...+|+ . +..+|.-.++.++|-.+ +.
T Consensus 1516 l~kVFeRAcq-----ycd------~~~V~~-------------------~-L~~iy~k~ek~~~A~el---l~------- 1554 (1710)
T KOG1070|consen 1516 LKKVFERACQ-----YCD------AYTVHL-------------------K-LLGIYEKSEKNDEADEL---LR------- 1554 (1710)
T ss_pred HHHHHHHHHH-----hcc------hHHHHH-------------------H-HHHHHHHhhcchhHHHH---HH-------
Confidence 5454444443 111 122222 2 23467777777777665 11
Q ss_pred hhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH--HHHHHHHHhcchHHHHHHHHHHHHhCCC--cchh-HHHHHH
Q 000307 1249 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPS--CLEL-VLMKAR 1323 (1690)
Q Consensus 1249 dnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL--N~IRq~I~lEdse~al~LfdklLe~~P~--d~eL-~L~Aay 1323 (1690)
.| ... .+ +..++ ..+-+++..++-++|..|+.++|+.-|. .+++ .-.|..
T Consensus 1555 -------~m----~KK-F~-------------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1555 -------LM----LKK-FG-------------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred -------HH----HHH-hc-------------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 11 111 11 22222 2222222344678999999999999999 6666 666666
Q ss_pred HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-------------HHHHHhhhcc--c
Q 000307 1324 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------------WFHSVWKVQY--S 1388 (1690)
Q Consensus 1324 L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-------------ff~gia~~Q~--~ 1388 (1690)
+-+.+-++-+...||..|.-.||..- +|+=||..-+..++.+.+..|.+| ||.-+-.|-+ .
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtD----lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTD----LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchh----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 77777778888999999999999999 999999999999999999999999 6666666655 3
Q ss_pred ccccchhh
Q 000307 1389 QVEISDPL 1396 (1690)
Q Consensus 1389 ~deALD~l 1396 (1690)
.+++++..
T Consensus 1686 de~~vE~V 1693 (1710)
T KOG1070|consen 1686 DEKNVEYV 1693 (1710)
T ss_pred chhhHHHH
Confidence 55555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.056 Score=61.72 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHhcCC--CCHH--------HHHHHHhc
Q 000307 1051 GMKKALSLLSRALEAD------PTSEILWITYLLIFYSN-TNSVGKDDMFSYSVKHNE--GSYA--------LWLMYINS 1113 (1690)
Q Consensus 1051 ~yDAALdLLsrALEIN------PtSAeaWyeyl~lY~~~-~~~~ea~emfekAVelaP--~NY~--------Lw~mYINs 1113 (1690)
+++.|...|.+|+++- ..++.++..++.+|-.. +..+.|.++|++|+++-. +... ++.+|+..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 5667777777777762 23688999999999998 899999999999999832 2222 88889999
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc--cccCCCCcccccH
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI--PATGSNDRHSLFL 1191 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq--~Al~G~sE~~lSL 1191 (1690)
+ .|++|++.|++.+... -+..-.-..+=+.++..+=|+...|++-.|-..+++... +.-.+..| .-.+
T Consensus 169 ~--------~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E-~~~~ 238 (282)
T PF14938_consen 169 G--------RYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE-YKFL 238 (282)
T ss_dssp T---------HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH-HHHH
T ss_pred C--------CHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-HHHH
Confidence 8 9999999999988764 221112335668888888899999999889888888775 12234445 4566
Q ss_pred HHHHHHhccCCccch-hHHHHHHH
Q 000307 1192 SDILTCLTISDKLIF-WVCCVYLV 1214 (1690)
Q Consensus 1192 sKi~~YLt~sDkc~A-wLc~iYdl 1214 (1690)
..+......+|-..+ ..+..|+.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcc
Confidence 777777777777776 56666643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.054 Score=59.18 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPt---SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
.+.+-..|...+.. |+|+.|..+|...+...|+ ++.+++.++..|+..+.-..|...|+.-++..|.+-.
T Consensus 5 ~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 5 AEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 45666777777777 8999999999999999887 6789999999999999999999999999999998765
Q ss_pred -----HHHHHHhcCCCc---ccchHHHHHHHHHHHHhhhcCCCCcchhhh----------hhHHHHHHHHHHHhhhcCHH
Q 000307 1106 -----LWLMYINSRTPL---NHRLDAYDAALSVLCRCASASDGDEMHASA----------CILDLFLQMLQCFCMSGNTE 1167 (1690)
Q Consensus 1106 -----Lw~mYINsr~s~---ddrl~aYdrAI~aLe~las~~~pDr~~~Sa----------~ILDvLL~LvqLY~qSGnyd 1167 (1690)
++..|.++...+ +-......+|+..|..+...+ |+-....- .|-+--+..+.+|...|+|.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 444444433222 333346678999999999999 76433321 33344467789999999999
Q ss_pred HHHHHHHhhcc
Q 000307 1168 KAIQRISRLLI 1178 (1690)
Q Consensus 1168 KAI~tL~rLEq 1178 (1690)
.||.+++.+..
T Consensus 159 aA~~r~~~v~~ 169 (203)
T PF13525_consen 159 AAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998886
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.021 Score=50.64 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1104 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1104 Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|.++..|+..+ .|++|+..|++..+.+ |+. .++++.+..+|.++|++++|+..+.++..
T Consensus 1 ~~~a~~~~~~g--------~~~~A~~~~~~~l~~~-P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQG--------DYDEAIAAFEQALKQD-PDN-------PEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHCT--------HHHHHHHHHHHHHCCS-TTH-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHcC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778888888 9999999998888888 888 88999999999999999999988777653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.17 Score=57.41 Aligned_cols=129 Identities=13% Similarity=0.067 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCC---------------C---CchHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNT---------------N---SVGKD 1090 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~---------------~---~~ea~ 1090 (1690)
++.+.+|.-++.. ++|+.|...+.+.++.+|++ +.++|.++..+...+ . -..+.
T Consensus 70 ~a~l~la~ayy~~-----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 70 QVQLDLIYAYYKN-----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 4444555555554 56999999999999999986 456777776543332 1 12456
Q ss_pred HHHHHHHhcCCCCHH---------------------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000307 1091 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1149 (1690)
Q Consensus 1091 emfekAVelaP~NY~---------------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~I 1149 (1690)
..|+.-|+.-|++-. ++-+|.+.+ .|..||.-+..+...+ |+- ...
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~--------~y~AA~~r~~~v~~~Y-p~t----~~~ 211 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG--------AYVAVVNRVEQMLRDY-PDT----QAT 211 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------chHHHHHHHHHHHHHC-CCC----chH
Confidence 889999999998865 677788888 8999999999999988 653 346
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1150 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1150 LDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.|.|..|+.-|...|..+.|-.++..|..
T Consensus 212 ~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 212 RDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999999999999999887776654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.067 Score=61.64 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|+|..|..+|.++.+++|+++++|.-++-.|.+.+...+|+.-|.+|.++.|.+-. |+-.|+=.+ .++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g--------d~~ 185 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG--------DLE 185 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC--------CHH
Confidence 88999999999999999999999999999999999999999999999999988776 664444445 599
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL 1173 (1690)
+|...+...+..- +.. .=+..-|+-+...+|+.+.|-.++
T Consensus 186 ~A~~lll~a~l~~-~ad-------~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 186 DAETLLLPAYLSP-AAD-------SRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhCC-CCc-------hHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999997777665 333 346667777888899998886644
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.008 Score=49.14 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHH
Q 000307 1058 LLSRALEADPTSEILWITYLLIFYSNTNSVGKD 1090 (1690)
Q Consensus 1058 LLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~ 1090 (1690)
+|.+|||+||+++++|+.|+.+|...+..++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999998877664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.11 Score=56.90 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=98.7
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCc-----------hHH
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSV-----------GKD 1090 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSA---eaWyeyl~lY~~~~~~~-----------ea~ 1090 (1690)
-.++.-.++++.+|.-++.. |+|+.|...+.+-++..|+++ .++|..+..++.+.... .|.
T Consensus 36 P~s~~a~~A~l~la~a~y~~-----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 36 PNSPYAPQAQLMLAYAYYKQ-----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 33444457777777777665 789999999999999999965 58888888877664333 678
Q ss_pred HHHHHHHhcCCCCHH---------------------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000307 1091 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1149 (1690)
Q Consensus 1091 emfekAVelaP~NY~---------------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~I 1149 (1690)
..|+.-++.-|++-. ++.+|.+.+ .|..|+.-+..+...+ |+- -..
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~--------~y~aA~~r~~~v~~~y-p~t----~~~ 177 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG--------KYKAAIIRFQYVIENY-PDT----PAA 177 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------HHHHHHHHHHHHHHS-TTS----HHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHC-CCC----chH
Confidence 899999999999865 788899999 9999999999999999 663 456
Q ss_pred HHHHHHHHHHHhhhcCHHHH
Q 000307 1150 LDLFLQMLQCFCMSGNTEKA 1169 (1690)
Q Consensus 1150 LDvLL~LvqLY~qSGnydKA 1169 (1690)
-|.+..|+..|..-|..+.|
T Consensus 178 ~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 178 EEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCChHHH
Confidence 89999999999999998844
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.15 Score=59.02 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000307 1300 SMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1379 (1690)
Q Consensus 1300 al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff 1379 (1690)
+..-+-......|.|.+++.++.-+.+-+-.+.+..+..+++...|+... .=.-++..++..+++..|+...++
T Consensus 52 a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~g~~~~A~~~~rk-- 125 (257)
T COG5010 52 AAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRNGNFGEAVSVLRK-- 125 (257)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHhcchHHHHHHHHH--
Confidence 45556677788999999944444455555488888998999999999876 333478888999999888887754
Q ss_pred HHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1380 HSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1380 ~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
....-+. ...++ ..+|-+|-+ .|+.++|..+|-+||+..|.+
T Consensus 126 -------------------A~~l~p~------d~~~~-----------~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 126 -------------------AARLAPT------DWEAW-----------NLLGAALDQ--LGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred -------------------HhccCCC------Chhhh-----------hHHHHHHHH--ccChhHHHHHHHHHHHhccCC
Confidence 2222222 24667 678889999 999999999999999999998
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcccc
Q 000307 1460 HFKHCVREHAMLLLINESEPKEGAP 1484 (1690)
Q Consensus 1460 ~~i~cLNNYAYFLSle~~dL~KAEq 1484 (1690)
-..+||.+|-+.+++. +.+|+.
T Consensus 168 --p~~~nNlgms~~L~gd-~~~A~~ 189 (257)
T COG5010 168 --PSIANNLGMSLLLRGD-LEDAET 189 (257)
T ss_pred --chhhhhHHHHHHHcCC-HHHHHH
Confidence 8899999999998873 444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.036 Score=70.45 Aligned_cols=195 Identities=16% Similarity=0.092 Sum_probs=150.7
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH------HHhhccccHHHHhh
Q 000307 1153 FLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY------LVIYRKLPDAVLQL 1226 (1690)
Q Consensus 1153 LL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY------dl~YrvLPGd~y~q 1226 (1690)
=..++.+|..-|=+..|+....||+- -.+ .|.=|+..|+..+|-+...= +.+--.++||+..+
T Consensus 401 q~~laell~slGitksAl~I~Erlem-----w~~------vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM-----WDP------VILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH-----HHH------HHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 34578889999999999999999885 223 67888889988888443332 44556788999999
Q ss_pred ccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHH---------HHHHhcch
Q 000307 1227 LECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW---------CMAVLNGL 1297 (1690)
Q Consensus 1227 ne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IR---------q~I~lEds 1297 (1690)
..+...|+.+ .+.-++-|.++.|--.|+. .. +++..+.....+++|.+. +.+.+++.
T Consensus 470 ~s~yEkawEl---------sn~~sarA~r~~~~~~~~~----~~-fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 470 PSLYEKAWEL---------SNYISARAQRSLALLILSN----KD-FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hHHHHHHHHH---------hhhhhHHHHHhhccccccc----hh-HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 9999999998 4555666777665334431 11 111123444455554432 22237799
Q ss_pred HHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1298 ECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1298 e~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
+.++.-|.+.+.+.|...+- -|-++||.+++ ...|+..+.+||+-+=++-. +|.-|.--++.-+.++.|++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~----iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQ----IWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCe----eeechhhhhhhcccHHHHHHHH
Confidence 99999999999999999999 99999999999 88999999999999999999 9999999999999999999998
Q ss_pred HH
Q 000307 1376 DR 1377 (1690)
Q Consensus 1376 ~~ 1377 (1690)
.+
T Consensus 611 ~r 612 (777)
T KOG1128|consen 611 HR 612 (777)
T ss_pred HH
Confidence 76
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.029 Score=49.79 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.|++|+..|++....+ |+. .++.+.|+++|..+|++++|...+.++..
T Consensus 6 ~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRN-PDN-------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHT-TTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999998 888 99999999999999999999999999886
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.046 Score=59.52 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=83.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHh
Q 000307 1059 LSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1059 LsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~l 1134 (1690)
|.-...|.++.=+..|-++--||+.++-.+|..+|.-.+-++|.|+. |+..|.-++ .|++||.+|.-.
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--------~y~~Ai~~Y~~A 97 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--------QFQKACDLYAVA 97 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 44556677777788899999999999999999999999999998877 889999999 999999999554
Q ss_pred hhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1135 ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1135 as~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
+.-. ++. --+.+++.+||.+.|+..+|+..+.-.
T Consensus 98 ~~l~-~~d-------p~p~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 98 FTLL-KND-------YRPVFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred HHcc-cCC-------CCccchHHHHHHHhCCHHHHHHHHHHH
Confidence 4433 332 235899999999999999999855433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.3 Score=53.23 Aligned_cols=361 Identities=14% Similarity=0.134 Sum_probs=176.3
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcC----CCcccchHHHHHHHHHHHHhhh-c
Q 000307 1063 LEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSR----TPLNHRLDAYDAALSVLCRCAS-A 1137 (1690)
Q Consensus 1063 LEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr----~s~ddrl~aYdrAI~aLe~las-~ 1137 (1690)
|--||.+.-.|--|..+.-+ ......--.||+|.+.=|.+|.||.-||..| ..+.--+-+|+.--..||+... -
T Consensus 20 ilRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m 98 (835)
T KOG2047|consen 20 ILRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM 98 (835)
T ss_pred HHcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Confidence 34477888888888777444 3334445678888888888888888888654 2223333445444444444322 1
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCC-----------------CCcccccHHHHHHHhcc
Q 000307 1138 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS-----------------NDRHSLFLSDILTCLTI 1200 (1690)
Q Consensus 1138 ~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G-----------------~sE~~lSLsKi~~YLt~ 1200 (1690)
++-++ +-+.-+|++..+|++-.--.+++|-+- |+.= .-| ..++--.+-||++
T Consensus 99 HkmpR---------Iwl~Ylq~l~~Q~~iT~tR~tfdrALr-aLpvtqH~rIW~lyl~Fv~~~~lP-ets~rvyrRYLk~ 167 (835)
T KOG2047|consen 99 HKMPR---------IWLDYLQFLIKQGLITRTRRTFDRALR-ALPVTQHDRIWDLYLKFVESHGLP-ETSIRVYRRYLKV 167 (835)
T ss_pred hcCCH---------HHHHHHHHHHhcchHHHHHHHHHHHHH-hCchHhhccchHHHHHHHHhCCCh-HHHHHHHHHHHhc
Confidence 22344 334445667777877776666666442 1110 011 1233333344444
Q ss_pred CCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh-------hhhhHHHHHHHHHHHHHhhcCCcchhh
Q 000307 1201 SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD-------EKQRAIKLIEMAVNSVELYSNGESLEK 1273 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd-------EPdnalAL~smA~dYY~~~~ndEsla~ 1273 (1690)
.-+..- .| ++|-...+ ...||-.. +..++.. -|.+=.--.++ -++..+ .+.+..
T Consensus 168 ~P~~~e----ey-ie~L~~~d-------~~~eaa~~---la~vln~d~f~sk~gkSn~qlw~el-cdlis~---~p~~~~ 228 (835)
T KOG2047|consen 168 APEARE----EY-IEYLAKSD-------RLDEAAQR---LATVLNQDEFVSKKGKSNHQLWLEL-CDLISQ---NPDKVQ 228 (835)
T ss_pred CHHHHH----HH-HHHHHhcc-------chHHHHHH---HHHhcCchhhhhhcccchhhHHHHH-HHHHHh---Ccchhc
Confidence 333211 11 11111111 11111111 1111111 11111111111 122221 111111
Q ss_pred hh----------cccchhHHHH-HHHHHHH-HhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHH
Q 000307 1274 ET----------NLRSAHCFAV-NHIWCMA-VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEA 1340 (1690)
Q Consensus 1274 ~~----------n~k~d~~tKL-N~IRq~I-~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~a 1340 (1690)
+. ..=+|+--+| +-+..|. ....++.|..++.+.|..--+--+. .++.+|.+--. .+-+. -.+.+
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE-~~~~~-~me~a 306 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEE-SCVAA-KMELA 306 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHH-HHHHH-HHhhh
Confidence 10 2334555555 3344433 3457888888888888888777777 67777765443 11111 11101
Q ss_pred --HHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-------HHHHHhhhcccccccchhhcccCCCCCCCCCCCC
Q 000307 1341 --LIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1411 (1690)
Q Consensus 1341 --L~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-------ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~ 1411 (1690)
-..+++..--.+|.| +-.+.++.....-.=--++++ |..-+.-+.....+.+.++..++..+++......
T Consensus 307 ~~~~~n~ed~~dl~~~~-a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs 385 (835)
T KOG2047|consen 307 DEESGNEEDDVDLELHM-ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGS 385 (835)
T ss_pred hhcccChhhhhhHHHHH-HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCC
Confidence 111222222222222 222333322221111112222 4444444444455555555555555545444444
Q ss_pred CcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc--CCcHHHHHHHHHH
Q 000307 1412 DPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA--SEHFKHCVREHAM 1470 (1690)
Q Consensus 1412 vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np--~N~~i~cLNNYAY 1470 (1690)
..+.. .=+++.|.. .|+.+.|.+.||+|++-+= -+++..+|-++|-
T Consensus 386 ~~~Lw-----------~~faklYe~--~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 386 PGTLW-----------VEFAKLYEN--NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhhHH-----------HHHHHHHHh--cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 55544 567788999 9999999999999997554 4777889999983
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.7 Score=51.52 Aligned_cols=367 Identities=15% Similarity=0.068 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhCC-CCchHHHHHHHHHhcCCCC-HH-------HHHHHHhcCC
Q 000307 1052 MKKALSLLSRALEAD---PTS----EILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGS-YA-------LWLMYINSRT 1115 (1690)
Q Consensus 1052 yDAALdLLsrALEIN---PtS----AeaWyeyl~lY~~~~-~~~ea~emfekAVelaP~N-Y~-------Lw~mYINsr~ 1115 (1690)
.+-|-+-|.+|+-|- |+. =.++..++++|.+.. .-..+..++++|++++-.+ || |+++.+-.+
T Consensus 63 ~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk- 141 (629)
T KOG2300|consen 63 VELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK- 141 (629)
T ss_pred HHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc-
Confidence 444555555554443 222 234556677777766 5667789999999998443 44 777888788
Q ss_pred CcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHH--HHHHHHHHHhhhcC---HHHHHHHHHhhcccccCCCCccccc
Q 000307 1116 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILD--LFLQMLQCFCMSGN---TEKAIQRISRLLIPATGSNDRHSLF 1190 (1690)
Q Consensus 1116 s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILD--vLL~LvqLY~qSGn---ydKAI~tL~rLEq~Al~G~sE~~lS 1190 (1690)
+|+-|+++|+--++.. .+.++--+- .++.+.+++.+..+ +.++++++..|++ ....++++
T Consensus 142 -------D~~sA~elLavga~sA----d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~--n~~sdk~~-- 206 (629)
T KOG2300|consen 142 -------DFPSALELLAVGAESA----DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQ--NISSDKTQ-- 206 (629)
T ss_pred -------cchhHHHHHhcccccc----chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--ccCCChHH--
Confidence 9999999984444433 122332222 23456667777665 6778888888886 22333222
Q ss_pred HHHHH---------HHhccCCccchhHHHH--HHHhhccccHH------HHhhc-----c-chhhhhcCCCCCcccchhh
Q 000307 1191 LSDIL---------TCLTISDKLIFWVCCV--YLVIYRKLPDA------VLQLL-----E-CEKELFAIDWPPVQLEDDE 1247 (1690)
Q Consensus 1191 LsKi~---------~YLt~sDkc~AwLc~i--Ydl~YrvLPGd------~y~qn-----e-~~KEAf~I~W~yvqvlkdE 1247 (1690)
.+-++ -|+-.|.-+-+.=|-+ -+..--..+.+ |+..+ . .+||.+.. .+.+...-
T Consensus 207 ~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqica---LV~l~tv~ 283 (629)
T KOG2300|consen 207 KEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICA---LVYLVTVI 283 (629)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHh---hhhhhHHh
Confidence 11111 1222222222211100 01111111111 11000 0 24444333 34444444
Q ss_pred hhhHHHHHHHHHHHHHhhcCCcchhhhh-cccchhHHHHHHHHHHHHhc----------chHH----HHHHHHHHHHhCC
Q 000307 1248 KQRAIKLIEMAVNSVELYSNGESLEKET-NLRSAHCFAVNHIWCMAVLN----------GLEC----SMNLLEKYIKLYP 1312 (1690)
Q Consensus 1248 PdnalAL~smA~dYY~~~~ndEsla~~~-n~k~d~~tKLN~IRq~I~lE----------dse~----al~LfdklLe~~P 1312 (1690)
-.+...+|..| ..|. ||-+.... .+..+-+-++=.|-++|.+| +.+. ++++++--+ .-|
T Consensus 284 hsm~~gy~~~~-~K~t----De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~-r~p 357 (629)
T KOG2300|consen 284 HSMPAGYFKKA-QKYT----DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCT-RFP 357 (629)
T ss_pred hhhhhHHHHHH-HHHH----HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCC
Confidence 45555555554 3343 23222221 22222122221122233322 3332 333333222 233
Q ss_pred C-------cchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-------
Q 000307 1313 S-------CLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------- 1377 (1690)
Q Consensus 1313 ~-------d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------- 1377 (1690)
. .++| +|.+.|=..-+.-+.|-..|..|.+.--+..--.-|--| ++-..+..++-+...++++.
T Consensus 358 ~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln-lAi~YL~~~~~ed~y~~ld~i~p~nt~ 436 (629)
T KOG2300|consen 358 TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN-LAISYLRIGDAEDLYKALDLIGPLNTN 436 (629)
T ss_pred chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh-HHHHHHHhccHHHHHHHHHhcCCCCCC
Confidence 3 5677 888888544444667777777777654332221111111 12223334454444444444
Q ss_pred ------------HHHH-HhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1378 ------------WFHS-VWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1378 ------------ff~g-ia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
|..| +++.|.+.+||-..++++..-.+. .||+--.... .-+||.+.+. .|+..|
T Consensus 437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana-------ed~~rL~a~~----LvLLs~v~ls--lgn~~e 503 (629)
T KOG2300|consen 437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA-------EDLNRLTACS----LVLLSHVFLS--LGNTVE 503 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch-------hhHHHHHHHH----HHHHHHHHHH--hcchHH
Confidence 3334 556666888888777766433333 2433000000 1445556666 788888
Q ss_pred HHHHHHHHHhhcc
Q 000307 1445 ARLAIDAALKAAA 1457 (1690)
Q Consensus 1445 Af~AYDkALk~np 1457 (1690)
+....-.|++|+-
T Consensus 504 s~nmvrpamqlAk 516 (629)
T KOG2300|consen 504 SRNMVRPAMQLAK 516 (629)
T ss_pred HHhccchHHHHHh
Confidence 8888888887775
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.33 Score=57.96 Aligned_cols=229 Identities=17% Similarity=0.114 Sum_probs=152.9
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
++-.|+..+ .|-+|-..|-.-.+.+ . ..|.|+.|...|..-..-.-|+.+|..-.. .-
T Consensus 229 ~gkCylrLg--------m~r~AekqlqssL~q~--~-------~~dTfllLskvY~ridQP~~AL~~~~~gld-----~f 286 (478)
T KOG1129|consen 229 MGKCYLRLG--------MPRRAEKQLQSSLTQF--P-------HPDTFLLLSKVYQRIDQPERALLVIGEGLD-----SF 286 (478)
T ss_pred HHHHHHHhc--------ChhhhHHHHHHHhhcC--C-------chhHHHHHHHHHHHhccHHHHHHHHhhhhh-----cC
Confidence 666788888 8888888884444443 2 278999999988888887778776643321 11
Q ss_pred cccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhh
Q 000307 1186 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1265 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~ 1265 (1690)
| +++.|+.=-+-++.--|...+++.+ |..++|-+|.|+-++..-|+.||=
T Consensus 287 P-------------------------~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY-- 336 (478)
T KOG1129|consen 287 P-------------------------FDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFY-- 336 (478)
T ss_pred C-------------------------chhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeecccc--
Confidence 1 1344444445555556677788888 888888888888888888777664
Q ss_pred cCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh----HHHHHHHhhccCCCccHHHHHHHH
Q 000307 1266 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEAL 1341 (1690)
Q Consensus 1266 ~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL 1341 (1690)
.| ..|-|+..++++|++--...+| -|++.|-+.-+ -.+.-|+.||
T Consensus 337 ~~----------------------------~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D---~~L~sf~RAl 385 (478)
T KOG1129|consen 337 DN----------------------------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID---LVLPSFQRAL 385 (478)
T ss_pred CC----------------------------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh---hhHHHHHHHH
Confidence 23 2334455677777777777777 77887776666 5667788888
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCccccccccc
Q 000307 1342 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1421 (1690)
Q Consensus 1342 ~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~ 1421 (1690)
+..-+..+ ..=+|+-|-..++.-|++..|.+-.+- ++ ++| +.+
T Consensus 386 stat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrl-----------------aL---------------~~d----~~h 428 (478)
T KOG1129|consen 386 STATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRL-----------------AL---------------TSD----AQH 428 (478)
T ss_pred hhccCcch-hhhhhhccceeEEeccchHHHHHHHHH-----------------Hh---------------ccC----cch
Confidence 87653332 224788888888888888877664422 00 111 001
Q ss_pred chhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccC
Q 000307 1422 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1458 (1690)
Q Consensus 1422 Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~ 1458 (1690)
-. ++-|+..-.+=+|+..+|...|..|-..+|+
T Consensus 429 ~e----alnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 429 GE----ALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HH----HHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 11 4555533333399999999999999988885
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.035 Score=46.95 Aligned_cols=42 Identities=5% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHH
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1111 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYI 1111 (1690)
|++|+.|+..|...++..+|.++|+++++.+|+|-.+|..+-
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 579999999999999999999999999999999999887764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.049 Score=66.86 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=56.8
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC-------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhh
Q 000307 1064 EADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1064 EINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N-------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las 1136 (1690)
+.+|+.+++|+.++..|+.++..++|.++|++|++++|++ |.++..|..++ .+++|+..|.+..+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG--------r~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE--------EGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999996 34999999999 67777777655544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.21 Score=51.72 Aligned_cols=60 Identities=13% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1071 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1071 eaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
+++|+++..|-..|...+|...|++|.+.-.+.-. |+..|.+.+ .|++|+.+|.+....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC
Confidence 34555555555555555555555555554333322 445555555 5555555555544444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.039 Score=43.04 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
|++|+.++.+|+.+++-.+|.+.|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 6789999999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.058 Score=62.72 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--HH--HHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LW--LMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--Lw--~mYINsr~s~ddrl~aY 1124 (1690)
.|+++.||.+|.++ ++.|+.....++|..++....|..+++.+-+.++|+-- |+ |+.+..+ . ..|
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g-----~-e~~ 183 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG-----G-EKY 183 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT-----T-TCC
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC-----c-hhH
Confidence 47789999999876 67888888899999999999999999999999866544 44 4444444 1 378
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.+|.-+|++++..+ +.. ..++.-++-++.+.|+|+.|...|..-.
T Consensus 184 ~~A~y~f~El~~~~-~~t-------~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 184 QDAFYIFEELSDKF-GST-------PKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CHHHHHHHHHHCCS---S-------HHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc-CCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998887 555 5778889999999999999999876644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.87 Score=56.59 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=104.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhh
Q 000307 1061 RALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1061 rALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las 1136 (1690)
++...+|...++||-.+.-++..++..++...+..-++.-|+|-| ...+|+..+ .+.+|++.|.++.+
T Consensus 297 ~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~ 368 (484)
T COG4783 297 LAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALA 368 (484)
T ss_pred HHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHh
Confidence 334445999999999999999999999999999999999999999 447899999 99999999999988
Q ss_pred cCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc-ccccHHHHHHHhccCCccchhHHHH
Q 000307 1137 ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR-HSLFLSDILTCLTISDKLIFWVCCV 1211 (1690)
Q Consensus 1137 ~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE-~~lSLsKi~~YLt~sDkc~AwLc~i 1211 (1690)
.. |+. .=+-+.+.+.|...|+.++||..|++..- .+-.++ .+-. =-+.|-..||+..+-++..
T Consensus 369 l~-P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~--LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 369 LD-PNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDL--LAQAYAELGNRAEALLARA 432 (484)
T ss_pred cC-CCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHH--HHHHHHHhCchHHHHHHHH
Confidence 88 886 45667789999999999999999999885 222222 1111 1246778888877755543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.39 Score=60.23 Aligned_cols=133 Identities=11% Similarity=0.004 Sum_probs=96.1
Q ss_pred hhhchhhhHHHHHHHHHHhcccc---CchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000307 1024 LKQVELSNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1098 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~---n~~g~yDAALdLLsrALEI--NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVe 1098 (1690)
++..|....+|-.+|+-+..... ...+.+.+|...+.+++++ +|..+.+|.-++......++..+|...|++|++
T Consensus 369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~ 448 (517)
T PRK10153 369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID 448 (517)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44455566777777664433322 2245678899999998885 888999999999999999999999999999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
++| +.. ++..|.-.+ .+++|++.|++...-+ |.- .-+++.+=+.+.-|++...--++
T Consensus 449 L~p-s~~a~~~lG~~~~~~G--------~~~eA~~~~~~A~~L~-P~~---------pt~~~~~~~~f~~~~~~~~~~~~ 509 (517)
T PRK10153 449 LEM-SWLNYVLLGKVYELKG--------DNRLAADAYSTAFNLR-PGE---------NTLYWIENLVFQTSVETVVPYLY 509 (517)
T ss_pred cCC-CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC-CCC---------chHHHHHhccccccHHHHHHHHH
Confidence 998 433 566677788 9999999998876666 442 23566666666666665544444
Q ss_pred h
Q 000307 1175 R 1175 (1690)
Q Consensus 1175 r 1175 (1690)
+
T Consensus 510 ~ 510 (517)
T PRK10153 510 R 510 (517)
T ss_pred h
Confidence 3
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.15 Score=58.17 Aligned_cols=122 Identities=13% Similarity=0.173 Sum_probs=83.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-HHHHHHh-cCCCcccchHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYIN-SRTPLNHRLDAYD 1125 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-Lw~mYIN-sr~s~ddrl~aYd 1125 (1690)
-.|+||+|++.|.--||.||+..=+.-.-+.-+|--+....|++-|.+-.+-+|.+-. .-|+||+ ++ ++-+.+.-+
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~dP~~A~tn 188 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--LDPKQAKTN 188 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--CCHHHHHHH
Confidence 5688999999999999999997766666666666677788999999988888886644 3344554 33 222211110
Q ss_pred ------------------------HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHH
Q 000307 1126 ------------------------AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1171 (1690)
Q Consensus 1126 ------------------------rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~ 1171 (1690)
-..+.+.+.+.++..+++...-.++|..++|...|.++|..+.|..
T Consensus 189 L~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 189 LKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 0112233333333345555566889999999999999999999865
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.81 Score=55.17 Aligned_cols=241 Identities=17% Similarity=0.108 Sum_probs=125.3
Q ss_pred CHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccC
Q 000307 1103 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1182 (1690)
Q Consensus 1103 NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~ 1182 (1690)
+-|++..|...+ +|++|+..|..+....+++ -++-+.|+=++-.-|-|..|-+ |-..|
T Consensus 60 ~lWia~C~fhLg--------dY~~Al~~Y~~~~~~~~~~--------~el~vnLAcc~FyLg~Y~eA~~----~~~ka-- 117 (557)
T KOG3785|consen 60 QLWIAHCYFHLG--------DYEEALNVYTFLMNKDDAP--------AELGVNLACCKFYLGQYIEAKS----IAEKA-- 117 (557)
T ss_pred HHHHHHHHHhhc--------cHHHHHHHHHHHhccCCCC--------cccchhHHHHHHHHHHHHHHHH----HHhhC--
Confidence 345666777777 8888988887765544233 2333444455555577777654 22211
Q ss_pred CCCcccccHHHHH--HHhccCCccchhHHHHH----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHH
Q 000307 1183 SNDRHSLFLSDIL--TCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1183 G~sE~~lSLsKi~--~YLt~sDkc~AwLc~iY----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
.+++- -.++. +-...+|.+.. +..-- -++=|.-++.+--..-..+||.++ |.+|+.++|+-...-+-
T Consensus 118 ~k~pL---~~RLlfhlahklndEk~~-~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv---YkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 118 PKTPL---CIRLLFHLAHKLNDEKRI-LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV---YKRVLQDNPEYIALNVY 190 (557)
T ss_pred CCChH---HHHHHHHHHHHhCcHHHH-HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhcChhhhhhHHH
Confidence 12320 00111 11223333221 11000 111111222222222356788888 88888888887777777
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccH
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS 1334 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai 1334 (1690)
||+=||.. +=..-+.++++-||.+.|+..=- ...+.+.+.-. +..|.
T Consensus 191 ~ALCyyKl------------------------------DYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n-gr~ae 239 (557)
T KOG3785|consen 191 MALCYYKL------------------------------DYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN-GRTAE 239 (557)
T ss_pred HHHHHHhc------------------------------chhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc-cchhH
Confidence 76666653 11222334556666666665543 33344444433 33333
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcc
Q 000307 1335 VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPE 1414 (1690)
Q Consensus 1335 ~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSD 1414 (1690)
.....+.. |.. ..+.++..||+.=. -+-...+.|+.++-..+.+|+ +
T Consensus 240 ~E~k~lad----N~~----------------~~~~f~~~l~rHNL----VvFrngEgALqVLP~L~~~IP---------E 286 (557)
T KOG3785|consen 240 DEKKELAD----NID----------------QEYPFIEYLCRHNL----VVFRNGEGALQVLPSLMKHIP---------E 286 (557)
T ss_pred HHHHHHHh----ccc----------------ccchhHHHHHHcCe----EEEeCCccHHHhchHHHhhCh---------H
Confidence 33222221 211 13667788886500 000256677777766666664 3
Q ss_pred cccccccchhhhhHHHHHHHHHhhhcChHHHHHHH
Q 000307 1415 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1449 (1690)
Q Consensus 1415 fy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AY 1449 (1690)
+=+|+++|-+=+++.+||+...
T Consensus 287 -------------ARlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 287 -------------ARLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred -------------hhhhheeeecccccHHHHHHHH
Confidence 7788988877799999988653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.1 Score=47.00 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1076 YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1076 yl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
+..+|...+...++.+.++++++++|++.. .+.+|...+ .|.+|+..|++..+.. |+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~l~~~l~~~-p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG--------RYEEALEDLERALELS-PDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--------cHHHHHHHHHHHHHHC-CCc
Confidence 356888999999999999999999999988 678899999 9999999999988887 776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.044 Score=64.17 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=57.1
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
++.|.|+.|..-...||.|||..+.+|.-+...|+.+++.++|.+.|.||.+++|+|-.
T Consensus 126 ~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 126 SKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 67899999999999999999999999999999999999999999999999999999975
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.2 Score=64.21 Aligned_cols=131 Identities=18% Similarity=0.091 Sum_probs=89.0
Q ss_pred HHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhc
Q 000307 1038 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINS 1113 (1690)
Q Consensus 1038 Al~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINs 1113 (1690)
|..+++--.-..++|.+|...|.+.|++||-....||.++-.+.+..+-..+.+.|-.+|.++|+|.. |...||..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 33444443433477888888888888888888888888888888888888888888888888888888 55667777
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCC
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1184 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~ 1184 (1690)
+ +-.+|-..+-+..+.+ -+. -.| -.--+.+..-.|.++.||..+-||+.-..++.
T Consensus 567 ~--------~k~ra~~~l~EAlKcn-~~~----w~i---WENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 567 K--------KKKRAFRKLKEALKCN-YQH----WQI---WENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred h--------hhHHHHHHHHHHhhcC-CCC----Cee---eechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 6 6666666664444433 221 111 11123345667888888888888876333443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.24 Score=61.74 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=74.3
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHH----HHHHHhcCCCcccchH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL----WLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~L----w~mYINsr~s~ddrl~ 1122 (1690)
.+.|+|..|...|..||.-||+++.+|+..+..|...+....+..-|+++++++|.+... +..+.-.+
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-------- 440 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-------- 440 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--------
Confidence 578999999999999999999999999999999999999999999999999999876652 23344445
Q ss_pred HHHHHHHHHHHhhhcCCCCc
Q 000307 1123 AYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr 1142 (1690)
.|++|+.+|......+ |+.
T Consensus 441 ~ydkAleay~eale~d-p~~ 459 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD-PSN 459 (539)
T ss_pred HHHHHHHHHHHHHhcC-chh
Confidence 8999999997665555 665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.86 Score=43.69 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=92.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhcCCC--CHH-----HHHHHHhcCCCccc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEG--SYA-----LWLMYINSRTPLNH 1119 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~-lY~~~~~~~ea~emfekAVelaP~--NY~-----Lw~mYINsr~s~dd 1119 (1690)
..+.+..|+..+..+++.++.....+..+.. +|+..+.-..+.+.|++|+..+|. .+. +...|...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 181 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG----- 181 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc-----
Confidence 3466899999999999999998777777777 899999999999999999997763 333 333344455
Q ss_pred chHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1120 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1120 rl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.++.|+..+....... +.. ....+..+...|...+.+++|+..+.+...
T Consensus 182 ---~~~~a~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 ---RYEEALELLEKALKLN-PDD------DAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred ---CHHHHHHHHHHHHhhC-ccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 8899999998887776 441 267888999999999999999998877775
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.89 E-value=15 Score=47.21 Aligned_cols=133 Identities=15% Similarity=0.189 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC--HH----HHHHHHHHHHhCCCCchHHHHHHHHHhcCCC
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS--EI----LWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS--Ae----aWyeyl~lY~~~~~~~ea~emfekAVelaP~ 1102 (1690)
+|...-+++|-.+++.-. ++|.|-..|++++.+.-.. .. +-+.++++|.+.+... |...+.++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~----n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETE----NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 455777778877777754 4899999999998888542 22 2346678888887777 99999999999844
Q ss_pred ---CHHH-------HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHhhhcCHHHHH
Q 000307 1103 ---SYAL-------WLMYINSRTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAI 1170 (1690)
Q Consensus 1103 ---NY~L-------w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~--pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI 1170 (1690)
+.|. +.+++..+ ++..|++.|..++.... +|. ....+.= +...-+..+.+..+.+|
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~--------d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~--l~~~~l~l~~~~~~d~~ 199 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHK--------DYNAALENLQSIAQLANQRGDP--AVFVLAS--LSEALLHLRRGSPDDVL 199 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHhhhcCCH--HHHHHHH--HHHHHHHhcCCCchhHH
Confidence 2442 23333334 78899999977666431 232 1222222 22233444667777788
Q ss_pred HHHHhhcc
Q 000307 1171 QRISRLLI 1178 (1690)
Q Consensus 1171 ~tL~rLEq 1178 (1690)
..++++..
T Consensus 200 ~~l~~~~~ 207 (608)
T PF10345_consen 200 ELLQRAIA 207 (608)
T ss_pred HHHHHHHH
Confidence 88887754
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.87 E-value=9.1 Score=48.76 Aligned_cols=361 Identities=13% Similarity=0.066 Sum_probs=194.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCC
Q 000307 1060 SRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASD 1139 (1690)
Q Consensus 1060 srALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~ 1139 (1690)
.+-+|-||.+-..|+.+.+.+-.+ .-.++++.+|.-|.--|.+-..|-.||..+ -+...|+.--.+|-+.-..-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~E----l~skdfe~VEkLF~RCLvkv- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERE----LASKDFESVEKLFSRCLVKV- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHH-
Confidence 566888999999999998886555 677788889999888887777888898877 22234554444443322211
Q ss_pred CCcchhhhhhHHH-HHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc-------hhHHHH
Q 000307 1140 GDEMHASACILDL-FLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI-------FWVCCV 1211 (1690)
Q Consensus 1140 pDr~~~Sa~ILDv-LL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~-------AwLc~i 1211 (1690)
=. +|+ -+||-..-. ++|.-+ ..-.--++.|--.=++|- +|--++
T Consensus 84 -Ln-------lDLW~lYl~YVR~-------------------~~~~~~-~~r~~m~qAy~f~l~kig~di~s~siW~eYi 135 (656)
T KOG1914|consen 84 -LN-------LDLWKLYLSYVRE-------------------TKGKLF-GYREKMVQAYDFALEKIGMDIKSYSIWDEYI 135 (656)
T ss_pred -hh-------HhHHHHHHHHHHH-------------------HccCcc-hHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 00 111 111111111 111111 000011223333333333 388888
Q ss_pred HHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-cccchhHHHH-----
Q 000307 1212 YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-NLRSAHCFAV----- 1285 (1690)
Q Consensus 1212 Ydl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-n~k~d~~tKL----- 1285 (1690)
+-+++-.-.|.|=.+- +-...=.+ |++.+.+.=+|.-.|-.+ ++.|++.+|- -.+... .++.+...+-
T Consensus 136 ~FL~~vea~gk~ee~Q-RI~~vRri---Yqral~tPm~nlEkLW~D-Y~~fE~~IN~-~tarK~i~e~s~~Ym~AR~~~q 209 (656)
T KOG1914|consen 136 NFLEGVEAVGKYEENQ-RITAVRRI---YQRALVTPMHNLEKLWKD-YEAFEQEINI-ITARKFIGERSPEYMNARRVYQ 209 (656)
T ss_pred HHHHcccccccHHHHH-HHHHHHHH---HHHHhcCccccHHHHHHH-HHHHHHHHHH-HHHHHHHHhhCHHHHHHHHHHH
Confidence 8899988888887766 33323347 777777777888788777 6777664442 111111 2233222221
Q ss_pred ---HHHHHHHHhc---------chHHHHHHHHHHHHhCCCcc---hh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc
Q 000307 1286 ---NHIWCMAVLN---------GLECSMNLLEKYIKLYPSCL---EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1286 ---N~IRq~I~lE---------dse~al~LfdklLe~~P~d~---eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
|+++.+-... +.-+.++|-..+++.-.++. += .+...|+ ..+|+++|.--+--+.
T Consensus 210 el~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv---------~yayeQ~ll~l~~~pe 280 (656)
T KOG1914|consen 210 ELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRV---------MYAYEQCLLYLGYHPE 280 (656)
T ss_pred HHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHH---------HHHHHHHHHHHhcCHH
Confidence 2222221110 22233444444443322222 11 2222222 2667888877777677
Q ss_pred hhHHHHHHHHHHHHhcCC--------------hhHHHHHHHH-----------HHHHHhhhcc---c---ccccchhhcc
Q 000307 1350 GIQCIWNQYVEYALQNGR--------------HDFAAELMDR-----------WFHSVWKVQY---S---QVEISDPLVA 1398 (1690)
Q Consensus 1350 g~qcaW~QLiq~Al~~e~--------------~d~ai~L~~~-----------ff~gia~~Q~---~---~deALD~lr~ 1398 (1690)
+|+++.++++...+ .+++..+-++ .|-+.+.++. + .+..-....+
T Consensus 281 ----iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ 356 (656)
T KOG1914|consen 281 ----IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNK 356 (656)
T ss_pred ----HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHH
Confidence 99999998888777 6777777776 2223333332 1 1111111111
Q ss_pred c--CCCCCCCC---------------------------CCCCCcccccccccchhhhhHHHHH-HHHHhhhcChHHHHHH
Q 000307 1399 D--MSHSSPES---------------------------TSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLA 1448 (1690)
Q Consensus 1399 g--~s~i~~es---------------------------~s~~vSDfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~A 1448 (1690)
. ...+.+.. ++-.--++| =.=.+ =||- .++.+=||..
T Consensus 357 ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf-----------Va~A~mEy~c--skD~~~AfrI 423 (656)
T KOG1914|consen 357 LLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF-----------VAAALMEYYC--SKDKETAFRI 423 (656)
T ss_pred HHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh-----------HHHHHHHHHh--cCChhHHHHH
Confidence 1 11111111 111112333 11122 2444 6899999999
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000307 1449 IDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1492 (1690)
Q Consensus 1449 YDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV 1492 (1690)
|+--|+.-++. -...+.|+-||+- |.+++.....|+.+
T Consensus 424 FeLGLkkf~d~--p~yv~~YldfL~~----lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 424 FELGLKKFGDS--PEYVLKYLDFLSH----LNDDNNARALFERV 461 (656)
T ss_pred HHHHHHhcCCC--hHHHHHHHHHHHH----hCcchhHHHHHHHH
Confidence 99999998877 6777889999886 55666666655443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.055 Score=42.74 Aligned_cols=34 Identities=0% Similarity=0.024 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
|.+|+.++.+|..++.-.+|.+.|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5788888888888888888888888888888863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.9 Score=56.20 Aligned_cols=120 Identities=12% Similarity=-0.106 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC--C-HH-------HHHHHHhc
Q 000307 1049 LEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG--S-YA-------LWLMYINS 1113 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSA-----eaWyeyl~lY~~~~~~~ea~emfekAVelaP~--N-Y~-------Lw~mYINs 1113 (1690)
.|+++.|..++.+||+..|... .++..++.++...+...++..++++|++.... + +. ++.+|+..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4789999999999999766533 45677888889999999999999999976542 1 11 56677777
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~--pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+ .++.|...+++...... ... .+....-+...+..++...|+++.|+..+.+...
T Consensus 545 G--------~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 545 G--------FLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred C--------CHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 7 66666666544322110 110 1111111244677888889999999987766553
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.13 Score=59.06 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=70.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
....|+.|++-|.|||-+||+.+.-|-.-+..|.+++.=+.+.+-|++|.+++|+.-- |++..+.+. .
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~--------~ 93 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK--------G 93 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc--------c
Confidence 3678999999999999999999999999999999999999999999999999975433 777777788 8
Q ss_pred HHHHHHHHHHhhh
Q 000307 1124 YDAALSVLCRCAS 1136 (1690)
Q Consensus 1124 YdrAI~aLe~las 1136 (1690)
|+.||..|-+.++
T Consensus 94 ~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 94 YDEAIKVLQRAYS 106 (284)
T ss_pred ccHHHHHHHHHHH
Confidence 8999998866544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.32 Score=59.10 Aligned_cols=139 Identities=18% Similarity=0.112 Sum_probs=92.6
Q ss_pred cccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH----HHHHHHHH
Q 000307 1218 KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV----NHIWCMAV 1293 (1690)
Q Consensus 1218 vLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL----N~IRq~I~ 1293 (1690)
+.-|+.|++.|+.+.|..- +++|+++......... .. .+....+|+ |+..|++-
T Consensus 212 ke~Gn~~fK~gk~~~A~~~------------------Yerav~~l~~~~~~~~-ee---~~~~~~~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKR------------------YERAVSFLEYRRSFDE-EE---QKKAEALKLACHLNLAACYLK 269 (397)
T ss_pred HHhhhHHHhhchHHHHHHH------------------HHHHHHHhhccccCCH-HH---HHHHHHHHHHHhhHHHHHHHh
Confidence 4567788877776666544 4444444332111111 11 223333333 88888888
Q ss_pred hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHH
Q 000307 1294 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1371 (1690)
Q Consensus 1294 lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~a 1371 (1690)
+.+..+|+..|.++|++.|.++.- .=--++|.+.. -+.|+.-|++|++++|.|.. |..||+...-.-. +-
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka----~~~el~~l~~k~~---~~ 341 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKA----ARAELIKLKQKIR---EY 341 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHH---HH
Confidence 779999999999999999999987 33345566666 77999999999999999999 9999998765432 22
Q ss_pred HHHHHHHHHHHhhhc
Q 000307 1372 AELMDRWFHSVWKVQ 1386 (1690)
Q Consensus 1372 i~L~~~ff~gia~~Q 1386 (1690)
..=-+.+|..++.--
T Consensus 342 ~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 342 EEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHhhcc
Confidence 223333566654433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.73 Score=47.80 Aligned_cols=78 Identities=19% Similarity=0.091 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC---CHH----HHHHHHhcCCCcc
Q 000307 1049 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG---SYA----LWLMYINSRTPLN 1118 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~---NY~----Lw~mYINsr~s~d 1118 (1690)
.|+.+.|..+|.++|+...+. ..+++.++..|...|..+++..+|+++++-.|+ +-. ++....+.+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g---- 89 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG---- 89 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC----
Confidence 488899999999999986665 679999999999999999999999999998887 333 445556667
Q ss_pred cchHHHHHHHHHHHHh
Q 000307 1119 HRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~l 1134 (1690)
.+++|++.+-..
T Consensus 90 ----r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 ----RPKEALEWLLEA 101 (120)
T ss_pred ----CHHHHHHHHHHH
Confidence 677777777443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.9 Score=50.52 Aligned_cols=182 Identities=14% Similarity=0.051 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhc--chHHHHHHHHHHHHhCCCcchh-HHHHH
Q 000307 1246 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN--GLECSMNLLEKYIKLYPSCLEL-VLMKA 1322 (1690)
Q Consensus 1246 dEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lE--dse~al~LfdklLe~~P~d~eL-~L~Aa 1322 (1690)
-.|+.++++.+--..|+... + ..-++-+-+. .-+.++++ ...-|..-.+.+-..-|...-+ .|+|.
T Consensus 26 rnseevv~l~~~~~~~~k~~-----~-----~g~e~w~l~E-qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam 94 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-----A-----LGDEIWTLYE-QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM 94 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-----c-----cCchHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 46777777777644444431 0 1112233223 33333333 3344444445555555777777 77777
Q ss_pred HHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcc-------------cc
Q 000307 1323 RLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQ 1389 (1690)
Q Consensus 1323 yL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~-------------~~ 1389 (1690)
+|...++-++|+..|+.+|+.+|.|.. ++--=+-.+-..|+--+||+-...|..-|--.+. .+
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 777777777777777777777777766 5555555555555655666665552221111111 22
Q ss_pred cccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHH-hhhcChHHHHHHHHHHHhhccCC
Q 000307 1390 VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR-LLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1390 deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq-~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
..|.=.+..- -.+++ .+ =+.|+-+++.+|. -.-.++.-|..-|++||+.+|.+
T Consensus 171 ~kA~fClEE~-ll~~P--------------~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 171 EKAAFCLEEL-LLIQP--------------FN--PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHH-HHcCC--------------Cc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 2222211111 11111 11 1357888997776 12235566888899999999966
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.59 Score=54.44 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhcCCCC-------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchh
Q 000307 1073 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1073 Wyeyl~lY~~~~~~~ea~emfekAVelaP~N-------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~ 1145 (1690)
.|.-+.=++..+.-.+|.+-|..=|+..|.+ |||+..|..++ .|++|...|..+++.+ |+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~-P~---- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDY-PK---- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhC-CC----
Confidence 6766666677777788889999999988875 88999999999 9999999999999988 54
Q ss_pred hhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|...-|.||.|..+....|+.++|..||..+..
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345689999999999999999999999988874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.95 E-value=8.5 Score=50.79 Aligned_cols=209 Identities=13% Similarity=0.131 Sum_probs=127.2
Q ss_pred HHHHHHHHhcccc--CchhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCCchHHHHHHHHHhc-------
Q 000307 1034 CVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSVKH------- 1099 (1690)
Q Consensus 1034 Wl~lAl~~Lnq~~--n~~g~yDAALdLLsrALEINPtS-----AeaWyeyl~lY~~~~~~~ea~emfekAVel------- 1099 (1690)
-||-|+.++-+.. .-..++-++...++-|+|+--+- -..||.|+.+.-.++.-+.|.++||||=-+
T Consensus 815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 3555666665532 22344555666666666664332 246899999999999999999999987433
Q ss_pred ---CCCCHH-------------HHHHHHhcCCCcccchHHHHHHHHHHHHh-hhcCCCCcchhhhhhH------HHHHHH
Q 000307 1100 ---NEGSYA-------------LWLMYINSRTPLNHRLDAYDAALSVLCRC-ASASDGDEMHASACIL------DLFLQM 1156 (1690)
Q Consensus 1100 ---aP~NY~-------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~l-as~~~pDr~~~Sa~IL------DvLL~L 1156 (1690)
+|.... -|--||.+-.-.|..+..|..|-..|+.. ...+ -.+.+-.|+|- -.-+.|
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd~AAcYhl 973 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGDKAACYHL 973 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhcccHHHHHHH
Confidence 233222 67789999999999999999998888542 1111 11122222222 244678
Q ss_pred HHHHhhhcCHHHHHHHHHhhcc--cccCCCCcccccHHHHHHHhccCCccchhHHHHH-HHh-hccccHHHHhhccchhh
Q 000307 1157 LQCFCMSGNTEKAIQRISRLLI--PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVI-YRKLPDAVLQLLECEKE 1232 (1690)
Q Consensus 1157 vqLY~qSGnydKAI~tL~rLEq--~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~-YrvLPGd~y~qne~~KE 1232 (1690)
+..|--.|++.+||.-+-|-.+ +|+-=+-|+++-=.-+-++|+.+.+.++-.+.-| +.- |-.--.-+|...|.--+
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH
Confidence 8888899999999875544322 2222222222211223456666666666655555 322 44444567888888888
Q ss_pred hhcCCCCCccc
Q 000307 1233 LFAIDWPPVQL 1243 (1690)
Q Consensus 1233 Af~I~W~yvqv 1243 (1690)
|+++...+++-
T Consensus 1054 ALelAF~tqQf 1064 (1416)
T KOG3617|consen 1054 ALELAFRTQQF 1064 (1416)
T ss_pred HHHHHHhhccc
Confidence 87775555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.47 Score=51.97 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
+.--.+|+..+++ |+|+.|..+|.-..-.||-++.-|.-|+..|-.+++-++|.++|..|.-++++++. .+
T Consensus 38 e~iY~~Ay~~y~~-----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQ-----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 6666778888877 99999999999999999999999999999999999999999999999999998888 99
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhh
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las 1136 (1690)
..|+-.+ .-+.|...|+....
T Consensus 113 qC~l~l~--------~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMR--------KAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhC--------CHHHHHHHHHHHHh
Confidence 9999999 99999999965554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.11 Score=40.93 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
+++|+.++.+|.+++..+++.++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4789999999999999999999999999999854
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.3 Score=40.89 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=93.6
Q ss_pred chhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHH-HHHhcCCCcccc
Q 000307 1048 KLEGMKKALSLLSRALE--ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL-MYINSRTPLNHR 1120 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALE--INPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~-mYINsr~s~ddr 1120 (1690)
..+.+..|+..+..++. ..+....+|+.++.++...+....+.+.+..++...+.+.. ... .|...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 144 (291)
T COG0457 71 KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG------ 144 (291)
T ss_pred HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC------
Confidence 34668899999999998 89999999999999999999999999999999998877633 333 677888
Q ss_pred hHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1121 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1121 l~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+++|+..|.+..... +. .......++.+...+...++++.|+..+.+...
T Consensus 145 --~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 145 --DYEEALELYEKALELD-PE----LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred --CHHHHHHHHHHHHhcC-CC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8999999998775532 31 011255666666668899999999998887775
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.65 Score=56.88 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=151.6
Q ss_pred ccccccchhhhhhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHH
Q 000307 1011 SSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKD 1090 (1690)
Q Consensus 1011 ~rYF~~~~d~in~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~ 1090 (1690)
.+|=-..+.--.-|+.-|-++.-|-.-|..++-. ++|+.|+.=.++.++++|.-+-..-+..+++-+.....++.
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~-----~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMML-----GRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHH-----HhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 3343333333345556666667777777766665 78899999999999999999999988888887777777766
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHH
Q 000307 1091 DMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1170 (1690)
Q Consensus 1091 emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI 1170 (1690)
+.|. |+... .. -.|+..++.++-.+ .+ -+||..= -+.=++||.+.|+|+.|+
T Consensus 138 ~~~~--------~~~~~---~~------------anal~~~~~~~~s~-s~---~pac~~a-~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 138 EKLK--------SKQAY---KA------------ANALPTLEKLAPSH-SR---EPACFKA-KLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred HHhh--------hhhhh---HH------------hhhhhhhhcccccc-cC---CchhhHH-HHhhhhhhhhcccchhHH
Confidence 6555 22111 11 12333333344333 11 2333322 222356666666666665
Q ss_pred HHHHhhcccccCCCCc---------------ccccHHHHHHHhccCCccchhHHHHH----HHhhccccHHHHhhccchh
Q 000307 1171 QRISRLLIPATGSNDR---------------HSLFLSDILTCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEK 1231 (1690)
Q Consensus 1171 ~tL~rLEq~Al~G~sE---------------~~lSLsKi~~YLt~sDkc~AwLc~iY----dl~YrvLPGd~y~qne~~K 1231 (1690)
+.--++.. ++..+- ..+-...++.-|+++..+. ..+-.+ .++=.++-|+-...+|..+
T Consensus 190 ~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~-~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 190 SEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQ-KSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhh-hHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 54333332 111110 0001111111122221111 111111 4455577899999999999
Q ss_pred hhhcCCCCCcccchhhhhhHHHHHHH----HHHHHHhhcCCcchhhhh---cccchh-HHHHH--HHHHHHHhcchHHHH
Q 000307 1232 ELFAIDWPPVQLEDDEKQRAIKLIEM----AVNSVELYSNGESLEKET---NLRSAH-CFAVN--HIWCMAVLNGLECSM 1301 (1690)
Q Consensus 1232 EAf~I~W~yvqvlkdEPdnalAL~sm----A~dYY~~~~ndEsla~~~---n~k~d~-~tKLN--~IRq~I~lEdse~al 1301 (1690)
+|+.+ |.+.+.+||++.--+..+ |.-+.+ .+...-+... -.+++. -.|-- --.|++++|.++.++
T Consensus 267 ~A~E~---Yteal~idP~n~~~naklY~nra~v~~r--Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 267 KAYEC---YTEALNIDPSNKKTNAKLYGNRALVNIR--LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred HHHHH---HHHhhcCCccccchhHHHHHHhHhhhcc--cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999975433333 211222 1111111111 112221 12221 134666688999999
Q ss_pred HHHHHHHHhCCCcchh--HHHHHHHhhc
Q 000307 1302 NLLEKYIKLYPSCLEL--VLMKARLQKH 1327 (1690)
Q Consensus 1302 ~LfdklLe~~P~d~eL--~L~AayL~~k 1327 (1690)
+-|.+.|++-.+ +++ +|.-+-+-.|
T Consensus 342 ~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 342 EDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999999988 666 6666655444
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.16 Score=38.67 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=25.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHhhhc
Q 000307 1644 SERFFKRALSVYPFSIKLWKCYYDLSK 1670 (1690)
Q Consensus 1644 ~~rfy~~AlsvyPfS~~LW~~y~~~~k 1670 (1690)
++..|++|+...|.+..+|.+|+.|+.
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 488999999999999999999999975
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.50 E-value=13 Score=47.64 Aligned_cols=340 Identities=16% Similarity=0.146 Sum_probs=193.9
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccH-HHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai-~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
..+.+...|++-++--|..++| .-|.+++.........+ ..|+.|++..=.... ..-.|--||+....++++..+..
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~ 172 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVAN 172 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHH
Confidence 7788899999999999999999 77888877777565666 899999988877765 44599999999999999999999
Q ss_pred HHHH-----------HHHHHhhhccc----ccccchhhcccCCCCC-----------CCCCCCCCcccccccccchhhhh
Q 000307 1374 LMDR-----------WFHSVWKVQYS----QVEISDPLVADMSHSS-----------PESTSTSDPEFSVSNRNQMDVMF 1427 (1690)
Q Consensus 1374 L~~~-----------ff~gia~~Q~~----~deALD~lr~g~s~i~-----------~es~s~~vSDfy~~~~~Q~d~~f 1427 (1690)
|.++ ||..+-++-+. .--..|.+-++...+. .+.-+..+ ++...++.-.|.-+
T Consensus 173 iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v-~~~~~~s~~l~~~~ 251 (577)
T KOG1258|consen 173 IYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV-KDSTDPSKSLTEEK 251 (577)
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH-hhccCccchhhHHH
Confidence 9988 66665554431 1112222222211111 11111111 12333444444434
Q ss_pred HHHHH--HHHHhhhc---ChHHHHHHHHHHHh-----hccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHh
Q 000307 1428 GYLNL--SLHRLLQN---DWNEARLAIDAALK-----AAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLD 1497 (1690)
Q Consensus 1428 a~LGD--~Lyq~Lqg---~~~EAf~AYDkALk-----~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLD 1497 (1690)
.++.- .+|+.... ...|...-||...+ .+|.. ..=|-||-|||...-+ .+ +-+
T Consensus 252 ~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~--~aql~nw~~yLdf~i~--~g-------------~~~ 314 (577)
T KOG1258|consen 252 TILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD--QAQLKNWRYYLDFEIT--LG-------------DFS 314 (577)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc--HHHHHHHHHHhhhhhh--cc-------------cHH
Confidence 34433 22221111 12233344454443 23332 2223333333332110 00 111
Q ss_pred hhcccccccccc----hhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhc
Q 000307 1498 RARSLPYLKLLP----RQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIV 1573 (1690)
Q Consensus 1498 TAWILf~~~~lA----RiYI~~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~ 1573 (1690)
..-+||.+..++ -.|| +|+-.+.... .+.+.++-|+..=. .=.+|++ -+.+..++..+-.
T Consensus 315 ~~~~l~ercli~cA~Y~efW-----iky~~~m~~~-----~~~~~~~~~~~~~~-~i~~k~~-----~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 315 RVFILFERCLIPCALYDEFW-----IKYARWMESS-----GDVSLANNVLARAC-KIHVKKT-----PIIHLLEARFEES 378 (577)
T ss_pred HHHHHHHHHHhHHhhhHHHH-----HHHHHHHHHc-----CchhHHHHHHHhhh-hhcCCCC-----cHHHHHHHHHHHh
Confidence 123444444422 2233 2222222222 23344554444110 0002333 3667778777777
Q ss_pred CcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhcc-----------CC-----CCchHHHHHHHHHhhhc
Q 000307 1574 PSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHA-----------VP-----VAPEYVWVEAAGILGNI 1637 (1690)
Q Consensus 1574 P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fwA~s~l~nai~~a-----------~p-----vape~vWveAa~~l~~l 1637 (1690)
=.|+..|..+.-.+..++ ++....+.+|+.+.--.+-+.+ +| ---+..-|.-+-+...+
T Consensus 379 ~~n~~~A~~~lq~i~~e~-----pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY-----PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred hccHHHHHHHHHHHHhhC-----CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 788888886655555444 3455566777765422221111 11 11245557777788888
Q ss_pred hhHHHHHHHHHHhhhccccchHHHHHHHHhhhcccCCh
Q 000307 1638 SSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL 1675 (1690)
Q Consensus 1638 ~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~~g~~ 1675 (1690)
++-..-+++...+|++.+|+|-.||-.++.|++.++..
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 88888889999999999999999999999999999965
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.39 E-value=23 Score=47.20 Aligned_cols=362 Identities=11% Similarity=0.087 Sum_probs=204.0
Q ss_pred hcccc-CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC------------CchHHHHHHHHHhcCCCCHH--H
Q 000307 1042 LNQDA-NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN------------SVGKDDMFSYSVKHNEGSYA--L 1106 (1690)
Q Consensus 1042 Lnq~~-n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~------------~~ea~emfekAVelaP~NY~--L 1106 (1690)
|++.. -..|++|+||.-.+-- .+..+|-.++.+-.+-.. ...+...+++|.+.. ++.. +
T Consensus 733 l~FSfyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-~e~eakv 806 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-EEDEAKV 806 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-cchhhHH
Confidence 44443 4678999998755432 456788888776443222 112235677777765 3444 8
Q ss_pred HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1107 w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
+-+-|..+ +.++|+.+|-+. + | -|+| =.||..+|.++.|++.- |. .+-..-
T Consensus 807 AvLAieLg--------MlEeA~~lYr~c-k-----R-------~DLl---NKlyQs~g~w~eA~eiA---E~--~DRiHL 857 (1416)
T KOG3617|consen 807 AVLAIELG--------MLEEALILYRQC-K-----R-------YDLL---NKLYQSQGMWSEAFEIA---ET--KDRIHL 857 (1416)
T ss_pred HHHHHHHh--------hHHHHHHHHHHH-H-----H-------HHHH---HHHHHhcccHHHHHHHH---hh--ccceeh
Confidence 99999999 999999998332 1 2 3444 35677899999998722 11 111111
Q ss_pred ccccHHHHHHHhccCCccchhHHHH-----H-HHhhccc---cHH--HHhhccchhhhhcCCCC-CcccchhhhhhHHHH
Q 000307 1187 HSLFLSDILTCLTISDKLIFWVCCV-----Y-LVIYRKL---PDA--VLQLLECEKELFAIDWP-PVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1187 ~~lSLsKi~~YLt~sDkc~AwLc~i-----Y-dl~YrvL---PGd--~y~qne~~KEAf~I~W~-yvqvlkdEPdnalAL 1254 (1690)
--+--...-||...-+|.+.|.+- | .-.+|-| |+. .|-+..+++.+|.. |- |-. ...|-|-|++.
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlE-S~GemdaAl~~ 934 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLE-SVGEMDAALSF 934 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHh-cccchHHHHHH
Confidence 011123455666666676655442 2 1122222 222 34444455555555 43 332 23577889999
Q ss_pred HHHHHHHHHh-----hcCCcchhhhh---cccchhHHHHHHHHHHHH-hcchHHHHHHHHHH------------------
Q 000307 1255 IEMAVNSVEL-----YSNGESLEKET---NLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKY------------------ 1307 (1690)
Q Consensus 1255 ~smA~dYY~~-----~~ndEsla~~~---n~k~d~~tKLN~IRq~I~-lEdse~al~Lfdkl------------------ 1307 (1690)
.+.|-|||.. +.|+-+.+... +.+.+.|.-| ..+.. -++..+|+..|.++
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhl---aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHL---ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9998888875 12333333333 3444444433 22222 22444444444332
Q ss_pred -HHhC--CCcchhHHHHHHHhhcc-CCCccHHHHHH------HHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1308 -IKLY--PSCLELVLMKARLQKHD-FGDLSSVGFEE------ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1308 -Le~~--P~d~eL~L~AayL~~k~-m~e~Ai~vfe~------aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
+.+. ..--+++-+|.|..-++ --..|+..|.+ ||++.=. .-|--=.|||---+..+.=.++++-|..
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~---tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR---TQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh---hcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1111 11123345566665555 22244444433 3332211 1122346788888888777888888999
Q ss_pred HHHHHhhhcc---------cccccchhhcccCCCCCCCCC----CCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1378 WFHSVWKVQY---------SQVEISDPLVADMSHSSPEST----STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1378 ff~gia~~Q~---------~~deALD~lr~g~s~i~~es~----s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
||..+..|++ +..+|+.++...+..++.+.. +.-.+||-. +-.-.+.-+++++..| ||.+.-
T Consensus 1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e---~~R~~vLeqvae~c~q--QG~Yh~ 1163 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE---QERKQVLEQVAELCLQ--QGAYHA 1163 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH---HHHHHHHHHHHHHHHh--ccchHH
Confidence 9999999996 788999998877777765442 211233332 2223346899999999 998888
Q ss_pred HHHHHHHH
Q 000307 1445 ARLAIDAA 1452 (1690)
Q Consensus 1445 Af~AYDkA 1452 (1690)
|-.-|-.|
T Consensus 1164 AtKKfTQA 1171 (1416)
T KOG3617|consen 1164 ATKKFTQA 1171 (1416)
T ss_pred HHHHHhhh
Confidence 77655443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.34 E-value=6.6 Score=46.22 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHHhCCCc------chh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 000307 1296 GLECSMNLLEKYIKLYPSC------LEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGR 1367 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d------~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~ 1367 (1690)
+++++++|+..++.-.+.- -.| .++-|-|.... .+.|...+.++-..=|+-.. .=.-.+..+=..++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~-~~lAq~C~~~L~~~fp~S~R----V~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGR-DDLAQKCINQLRDRFPGSKR----VGKLKAMLLEATGN 101 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHhhc
Confidence 7888888888888766655 223 44444455555 56777888887777777665 21122222334678
Q ss_pred hhHHHHHHHH----------HHH---HHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHH
Q 000307 1368 HDFAAELMDR----------WFH---SVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSL 1434 (1690)
Q Consensus 1368 ~d~ai~L~~~----------ff~---gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L 1434 (1690)
+++|+++... ++. .+.+-|.+.-+|+..+-.- ..-|+ +.|. -...|.++|
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y------------L~~F~---~D~E--AW~eLaeiY 164 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY------------LDKFM---NDQE--AWHELAEIY 164 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH------------HHHhc---CcHH--HHHHHHHHH
Confidence 8888887766 221 2333333444444443211 11233 3344 236778899
Q ss_pred HHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1435 HRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1435 yq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
.. .|+++.|.--||.++=..|.|
T Consensus 165 ~~--~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 165 LS--EGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred Hh--HhHHHHHHHHHHHHHHcCCCc
Confidence 99 999999999999999999999
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.27 Score=54.62 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=60.0
Q ss_pred hhhhhchhhhHHHHHH--HHHHhccccC---chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-----------
Q 000307 1022 NKLKQVELSNEQCVEM--ALLILNQDAN---KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------- 1085 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~l--Al~~Lnq~~n---~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~----------- 1085 (1690)
......|+|.+.+..- ||..|.|..+ +..-+..|+.-|..||.|||+-..+++-++.-|+.++.
T Consensus 16 a~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 16 AAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3567788898888775 4555555433 45789999999999999999999999999988877654
Q ss_pred CchHHHHHHHHHhcCCCCH
Q 000307 1086 SVGKDDMFSYSVKHNEGSY 1104 (1690)
Q Consensus 1086 ~~ea~emfekAVelaP~NY 1104 (1690)
-++|.++|++||..+|.|-
T Consensus 96 F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHhcCCCcH
Confidence 3456789999999999774
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.36 Score=37.64 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1428 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1428 a~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
-.||.++++ .|++++|...|++||..+|++
T Consensus 5 ~~lg~~~~~--~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 5 YYLGQAYYQ--LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHCcCC
Confidence 678999999 999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.29 Score=44.84 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhc
Q 000307 1050 EGMKKALSLLSRALEAD-------PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 1099 (1690)
Q Consensus 1050 g~yDAALdLLsrALEIN-------PtSAeaWyeyl~lY~~~~~~~ea~emfekAVel 1099 (1690)
|+|+.|+..|.+||++- |.-+.+++.++.+|..+++..+|.+++++|++.
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77888888888888651 234677888888888888888888888888875
|
... |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.38 Score=56.98 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
-+-+++|... -+.|+.++|..+|.|||..+|+.+.++.+|+.+--..++-.+|+.+|-+|..++|.|-.
T Consensus 117 ~~Al~~A~~~-----~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 117 ILALKAAGRS-----RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHH-----HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4444444433 34588999999999999999999999999999977777778999999999999999987
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.3 Score=52.22 Aligned_cols=173 Identities=15% Similarity=0.164 Sum_probs=99.6
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHH
Q 000307 1241 VQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLM 1320 (1690)
Q Consensus 1241 vqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~ 1320 (1690)
.+.++++|+++-+-++++ ++=. ++....... +-+ .+.+ .+.-+.+++++|+.+|.+..|.+.
T Consensus 9 ~~~v~~~P~di~~Wl~li-~~Qd------~~~~~~~~~-----~~~-~~a~-----~E~klsilerAL~~np~~~~L~l~ 70 (321)
T PF08424_consen 9 NRRVRENPHDIEAWLELI-EFQD------ELFRLQSSS-----KAE-RRAL-----AERKLSILERALKHNPDSERLLLG 70 (321)
T ss_pred HHHHHhCcccHHHHHHHH-HHHH------Hhccccccc-----hhh-HHHH-----HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 455788899988888883 4332 222211011 111 1111 345677999999999999999443
Q ss_pred HHHHhhccCCCccH-HHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHhhhcccccccchhh
Q 000307 1321 KARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNG---RHDFAAELMDRWFHSVWKVQYSQVEISDPL 1396 (1690)
Q Consensus 1321 AayL~~k~m~e~Ai-~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e---~~d~ai~L~~~ff~gia~~Q~~~deALD~l 1396 (1690)
-..+-.+-.+.+.+ ..|+++|...|++.. +|..||.+....- +++.+..+..+ ++..+.......
T Consensus 71 ~l~~~~~~~~~~~l~~~we~~l~~~~~~~~----LW~~yL~~~q~~~~~f~v~~~~~~y~~---~l~~L~~~~~~~---- 139 (321)
T PF08424_consen 71 YLEEGEKVWDSEKLAKKWEELLFKNPGSPE----LWREYLDFRQSNFASFTVSDVRDVYEK---CLRALSRRRSGR---- 139 (321)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHHhccCcHHHHHHHHHH---HHHHHHHhhccc----
Confidence 33333333244554 899999999999999 9999999888743 34444444433 333333211111
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1397 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1397 r~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
..++. + ..++. ..++.=++..|.+-.=-|-.+-|++++...|.+|=
T Consensus 140 --~~~~~----~---~~~~e------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 140 --MTSHP----D---LPELE------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred --ccccc----c---hhhHH------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 01111 1 11211 11223334444443338999999999988887764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.23 Score=40.70 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
|+++|+++|+|+. +|+.|.......|++++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 7899999999999 99999999999999999863
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.37 Score=38.10 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1427 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1427 fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
+-.+|.+++. .|++++|...|++||+.+|++
T Consensus 4 ~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 4 YYNLGNAYFQ--LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHH--hCCchHHHHHHHHHHHHCcCC
Confidence 3678999999 999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.48 Score=37.25 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1427 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1427 fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
+-.+|.+|.+ .|+.++|...|++|++++|+|
T Consensus 4 ~~~lg~~y~~--~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQ--LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 3578999999 999999999999999999954
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.77 E-value=1 Score=55.00 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=68.5
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHH-H
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY-D 1125 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aY-d 1125 (1690)
.+...|++|+..=.++|+++|+++-++|--++.|..++.-+.|...|++|+++.|.|-.+..-++... .|...| +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~----~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK----QKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999987443333322 112233 3
Q ss_pred HHHHHHHHhhh
Q 000307 1126 AALSVLCRCAS 1136 (1690)
Q Consensus 1126 rAI~aLe~las 1136 (1690)
+.-.+|-+|-+
T Consensus 344 kekk~y~~mF~ 354 (397)
T KOG0543|consen 344 KEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhh
Confidence 33556655544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=89.74 E-value=1 Score=46.02 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1098 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVe 1098 (1690)
..|+++.|+.++.+++++||.+..+|..+...|...+...+|...|++..+
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999888887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.71 Score=57.26 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=80.1
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1126 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdr 1126 (1690)
-+...||.|.+++++||+++|+.++.|-.-++.|.+...--+|+.-+.+|++++| .|..+ |...+ +-..++..|-+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~--Y~rrg-~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKA--YVRRG-TAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhhe--eeecc-HHHHhHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999996 44421 22111 33344449999
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000307 1127 ALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1160 (1690)
Q Consensus 1127 AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY 1160 (1690)
|+..|+..++.. |++ -++.-.+-.+-
T Consensus 91 A~~~l~~~~~l~-Pnd-------~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 91 ALLDLEKVKKLA-PND-------PDATRKIDECN 116 (476)
T ss_pred HHHHHHHhhhcC-cCc-------HHHHHHHHHHH
Confidence 999999988887 777 55554444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.80 E-value=6.7 Score=46.43 Aligned_cols=218 Identities=16% Similarity=0.071 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHH---hc
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC---LT 1199 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~Y---Lt 1199 (1690)
+|-.+|..-+.-... ++. .+...+|..-|...|.|.-.|+.| .+ |..+ -+..|+.+ +.
T Consensus 23 nyq~~ine~~~~~~~--~~~-------~e~d~y~~raylAlg~~~~~~~eI--~~-----~~~~---~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSS--KTD-------VELDVYMYRAYLALGQYQIVISEI--KE-----GKAT---PLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHHHHHhhccc--cch-------hHHHHHHHHHHHHccccccccccc--cc-----ccCC---hHHHHHHHHHHhh
Confidence 677777755333222 122 567778888899999999888865 22 3343 23444433 32
Q ss_pred -cCC--ccch----hHHHHH---HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCc
Q 000307 1200 -ISD--KLIF----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1269 (1690)
Q Consensus 1200 -~sD--kc~A----wLc~iY---dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndE 1269 (1690)
.+. ..++ |++..+ ....+.+-+-+|+..+-..+|+.+ .......|---.-+.+...+.-...+. .
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~---~~~~~~lE~~Al~VqI~lk~~r~d~A~--~ 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKA---LHLGENLEAAALNVQILLKMHRFDLAE--K 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHH--H
Confidence 222 2333 777777 678999999999999999999998 555433332222222222112111101 1
Q ss_pred chhhhhcccchhHHHHHHHHHH-----HHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1270 SLEKETNLRSAHCFAVNHIWCM-----AVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1270 sla~~~n~k~d~~tKLN~IRq~-----I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
.+..- ...+.+.-|+.+.+. ..-+-.+.|.=.|..+=+.+|..+.+ -+....|++.+ .++|..+++++|.
T Consensus 159 ~lk~m--q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 159 ELKKM--QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALD 235 (299)
T ss_pred HHHHH--HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHh
Confidence 12221 233344444323222 22234556666777777755555555 77778888888 8899999999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCChhHH
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRHDFA 1371 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~d~a 1371 (1690)
..|+.+. .-.-+|-++...|..+++
T Consensus 236 kd~~dpe----tL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 236 KDAKDPE----TLANLIVLALHLGKDAEV 260 (299)
T ss_pred ccCCCHH----HHHHHHHHHHHhCCChHH
Confidence 9999988 666666667666666544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.92 Score=41.62 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
++.+|..++ .|++|+..|++..... ..-.+....+..++..|..+|...|++++|+..+.+-
T Consensus 11 la~~~~~~~--------~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 11 LARVYRELG--------RYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHTT---------HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777888888 7777777765543321 0001234567889999999999999999999976554
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=87.50 E-value=3.8 Score=50.97 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=91.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH---------HHHHHHHhcCCCcc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY---------ALWLMYINSRTPLN 1118 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY---------~Lw~mYINsr~s~d 1118 (1690)
.....+.|-.+|...++..|+++-..++-++++...++.++|.+.|++|+... ..+ +++|.|+-+.
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~---- 319 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQH---- 319 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHc----
Confidence 35667999999999999999999999999999999999999999999999533 222 2889999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCH-------HHHHHHHHhhcc
Q 000307 1119 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT-------EKAIQRISRLLI 1178 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGny-------dKAI~tL~rLEq 1178 (1690)
.|++|...+..+...++-.+ + =..++.+=+|.+.|+. ++|..-+.++..
T Consensus 320 ----~w~~A~~~f~~L~~~s~WSk-----a--~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 ----DWEEAAEYFLRLLKESKWSK-----A--FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ----hHHHHHHHHHHHHhccccHH-----H--HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999977552222 2 2445667788888888 777765555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.29 E-value=45 Score=43.03 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHh--CCCCCchhHHHHHHHHHHHHhcCChhHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEYALQNGRHDFAA 1372 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~--~PkNa~g~qcaW~QLiq~Al~~e~~d~ai 1372 (1690)
|.+-|...|+.=|+.++.+.+. .-+..||.--+-..-+..+||.++.. .|+... -+|.-.|.+--.=|+...++
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~---~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK---EIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH---HHHHHHHHHHHhcccHHHHH
Confidence 5666677899999999999999 77788887777455777999999988 555543 49999999999999999999
Q ss_pred HHHHHHHHHHh
Q 000307 1373 ELMDRWFHSVW 1383 (1690)
Q Consensus 1373 ~L~~~ff~gia 1383 (1690)
++-++.|..+-
T Consensus 493 ~lekR~~~af~ 503 (656)
T KOG1914|consen 493 KLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhcc
Confidence 99999877654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.6 Score=54.69 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHhcCCCCHHHH
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSN-TNSVGKDDMFSYSVKHNEGSYALW 1107 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~-~~~~ea~emfekAVelaP~NY~Lw 1107 (1690)
.|..+|+.++- .+.+-+. +..-=.+|..||..+|++|.+|..-+..-+.. .+.+-+.++|.++.+.+|++-.||
T Consensus 103 ~D~~lW~~yi~--f~kk~~~---~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 103 GDVKLWLSYIA--FCKKKKT---YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCHHHHHHHHH--HHHHhcc---hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 48889987642 2222222 34445678999999999999999988765554 448889999999999999999999
Q ss_pred HHHHhcC
Q 000307 1108 LMYINSR 1114 (1690)
Q Consensus 1108 ~mYINsr 1114 (1690)
--|.+.+
T Consensus 178 ~eyfrmE 184 (568)
T KOG2396|consen 178 KEYFRME 184 (568)
T ss_pred HHHHHHH
Confidence 9999988
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.3 Score=51.16 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=97.2
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
.|.=|.|.-++.++.|. ..||.++...|+.-|.+....+..+++|-.+.+.+.+.++|..+.++.|-|-+
T Consensus 256 ~dTfllLskvY~ridQP-------~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-------ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred hhHHHHHHHHHHHhccH-------HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 35566777778888774 67999999999999999999999999999999999999999999999999988
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccccc
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1181 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al 1181 (1690)
++-.|.=.. .=+-|+.+|-++..-- -.. -++|.-+.=|-.-.+.+|-++..+.|-+.+|+
T Consensus 329 cia~~yfY~~--------~PE~AlryYRRiLqmG-~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 329 CIAVGYFYDN--------NPEMALRYYRRILQMG-AQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred eeeeccccCC--------ChHHHHHHHHHHHHhc-CCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 333232233 3377888886653311 111 45566655555556678989998888876555
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.92 E-value=5 Score=45.60 Aligned_cols=133 Identities=16% Similarity=0.020 Sum_probs=87.7
Q ss_pred HHHHHHhCCCcc--hh-HHHHHHH---hhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1304 LEKYIKLYPSCL--EL-VLMKARL---QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1304 fdklLe~~P~d~--eL-~L~AayL---~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
-.+|-+.++.+- +- ..|..-+ +.++ + +.....++...-.|++ .|..-+=++++.-.++.+++|+|+..++.
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~-~-~~~~~~ekf~~~n~~t-~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKK-P-KSIAAAEKFVQANGKT-IYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhHHHHHHHHhhcccc-HHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 356666666663 11 3333332 2333 3 4445555555544444 35666778999999999999999999985
Q ss_pred --------HHHH-----Hhhhcc---cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcC
Q 000307 1378 --------WFHS-----VWKVQY---SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1441 (1690)
Q Consensus 1378 --------ff~g-----ia~~Q~---~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~ 1441 (1690)
=+.+ ++.+|. ..|+|+.++..... ..+++ .++-+-||+|-. +|+
T Consensus 115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------~~w~~-----------~~~elrGDill~--kg~ 174 (207)
T COG2976 115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------ESWAA-----------IVAELRGDILLA--KGD 174 (207)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------ccHHH-----------HHHHHhhhHHHH--cCc
Confidence 2333 445543 89999999972111 11222 234678999999 999
Q ss_pred hHHHHHHHHHHHhhccCC
Q 000307 1442 WNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1442 ~~EAf~AYDkALk~np~N 1459 (1690)
.+||+.+|++||...+++
T Consensus 175 k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 175 KQEARAAYEKALESDASP 192 (207)
T ss_pred hHHHHHHHHHHHHccCCh
Confidence 999999999999886544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.36 E-value=16 Score=45.81 Aligned_cols=203 Identities=16% Similarity=0.197 Sum_probs=124.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCCcchhhh--hcccchhHHHH-HHHHH-HHH----hcchHHHHHHHHHHHHhCCCc
Q 000307 1243 LEDDEKQRAIKLIEMAVNSVELYSNGESLEKE--TNLRSAHCFAV-NHIWC-MAV----LNGLECSMNLLEKYIKLYPSC 1314 (1690)
Q Consensus 1243 vlkdEPdnalAL~smA~dYY~~~~ndEsla~~--~n~k~d~~tKL-N~IRq-~I~----lEdse~al~LfdklLe~~P~d 1314 (1690)
-.+++|.|..-.|.+ +.||.. +++.+.. ++..+..-|+. .+.+. ++. ..|+..+-.||.+-|+--=.
T Consensus 34 rIkdNPtnI~S~fqL-iq~~~t---q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 34 RIKDNPTNILSYFQL-IQYLET---QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HhhcCchhHHHHHHH-HHHHhh---hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 357899999999999 799986 4444333 24444444444 33333 332 34999999999998875543
Q ss_pred chh-HHHHHHHhhccCCC---ccH----HHHHHHHH---hCCCCCchhHHHHHHHHHHHH---------hcCChhHHHHH
Q 000307 1315 LEL-VLMKARLQKHDFGD---LSS----VGFEEALI---KWPKGVPGIQCIWNQYVEYAL---------QNGRHDFAAEL 1374 (1690)
Q Consensus 1315 ~eL-~L~AayL~~k~m~e---~Ai----~vfe~aL~---~~PkNa~g~qcaW~QLiq~Al---------~~e~~d~ai~L 1374 (1690)
++| +||-.|++..+ +. .+. .+|+-++. .+|+-.+ +|..|+.+.= +++++|.+.++
T Consensus 109 ldLW~lYl~YIRr~n-~~~tGq~r~~i~~ayefv~~~~~~e~~s~~----~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 109 LDLWMLYLEYIRRVN-NLITGQKRFKIYEAYEFVLGCAIFEPQSEN----YWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred HhHHHHHHHHHHhhC-cccccchhhhhHHHHHHHHhcccccccccc----hHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 888 99999999887 22 222 56666665 7899999 9999887542 23344555444
Q ss_pred HHH--------------------------------------HHHHHhhhcccccccchhhcccCC---CCCCCCC--CCC
Q 000307 1375 MDR--------------------------------------WFHSVWKVQYSQVEISDPLVADMS---HSSPEST--STS 1411 (1690)
Q Consensus 1375 ~~~--------------------------------------ff~gia~~Q~~~deALD~lr~g~s---~i~~es~--s~~ 1411 (1690)
-.+ |..+.+.+|. -..+.+ |.+ ++..-.. -+-
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe----~~nlt~-Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQE----IQNLTR-GLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH----HHHHhc-cccccCchhhhhhccccc
Confidence 333 2223333332 222222 211 1111111 111
Q ss_pred CcccccccccchhhhhHHHHHHHHHh-----hhcChHHHHH--HHHHHHhhccCCcHHHHHHHHHHHHhc
Q 000307 1412 DPEFSVSNRNQMDVMFGYLNLSLHRL-----LQNDWNEARL--AIDAALKAAASEHFKHCVREHAMLLLI 1474 (1690)
Q Consensus 1412 vSDfy~~~~~Q~d~~fa~LGD~Lyq~-----Lqg~~~EAf~--AYDkALk~np~N~~i~cLNNYAYFLSl 1474 (1690)
.+| . -+||.+=|++ |.++.-+-.. +|+.+|.|.+-- .++|-.|..|++.
T Consensus 259 ~s~-S-----------~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~--~evw~dys~Y~~~ 314 (660)
T COG5107 259 TSD-S-----------NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYA--EEVWFDYSEYLIG 314 (660)
T ss_pred ccc-c-----------hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHhh
Confidence 233 2 3677777763 5566666554 679999999987 8999999998875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.9 Score=45.25 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=58.1
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--------HHHHHHhcC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSR 1114 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--------Lw~mYINsr 1114 (1690)
-.|++|-|+.+|.++|+.-|..+.+|-.-++-|--.+.++++++-+.+|++++-+--. -+.+|--++
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999999999999999999999999999999999955422 455555555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=85.63 E-value=6.1 Score=40.52 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHH
Q 000307 1050 EGMKKALSLLSRALEADPTS------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtS------AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~a 1123 (1690)
+.-..++..|.+++.+-... ..-|..-..- .-..++..|++ .++..|+..+ .
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--------~l~~~~~~~~~------~l~~~~~~~~--------~ 77 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--------RLRELYLDALE------RLAEALLEAG--------D 77 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--------HHHHHHHHHHH------HHHHHHHHTT---------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--------HHHHHHHHHHH------HHHHHHHhcc--------C
Confidence 34577778888888776432 1233333222 11222332222 2567788888 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|++|+..+..+...+ |-. .++...++.+|..+|++..|+..+.++..
T Consensus 78 ~~~a~~~~~~~l~~d-P~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRALALD-PYD-------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHS-TT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999888 887 89999999999999999999999988864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.52 E-value=3 Score=47.72 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPL 1117 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSA-----eaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ 1117 (1690)
+-|.|..|..-|+.||++=|..+ ++|..-+-.+.+++..+.+.+-|.+|++++| .|. -+-.|-+..
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e--- 182 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME--- 182 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh---
Confidence 45889999999999999999864 4666667777888889999999999999997 555 366777776
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1118 NHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1118 ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
.|+.||+=|-.+.... |.+
T Consensus 183 -----k~eealeDyKki~E~d-Ps~ 201 (271)
T KOG4234|consen 183 -----KYEEALEDYKKILESD-PSR 201 (271)
T ss_pred -----hHHHHHHHHHHHHHhC-cch
Confidence 8999999888777766 665
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.61 E-value=2.3 Score=50.96 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhCCCCchHHHHHHHHHhcCCCCHHH
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT-YLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWye-yl~lY~~~~~~~ea~emfekAVelaP~NY~L 1106 (1690)
+.|.-+|..+|--. -+.+-|..--+++..||..+|+++++|.. ...=|.-.++-+.++.||.+|+.++|++-.+
T Consensus 104 f~D~k~w~~y~~Y~-----~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYV-----IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 35677887765211 12345677778999999999999999988 4555666778888999999999999999999
Q ss_pred HHHHHhcCCC
Q 000307 1107 WLMYINSRTP 1116 (1690)
Q Consensus 1107 w~mYINsr~s 1116 (1690)
|.-|...+..
T Consensus 179 w~eyfr~El~ 188 (435)
T COG5191 179 WIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHH
Confidence 9888887733
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.12 E-value=81 Score=42.43 Aligned_cols=78 Identities=10% Similarity=0.013 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhc----chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhc-cCCCccHHHHHHHHHhCCCCCchhHHHHH
Q 000307 1283 FAVNHIWCMAVLN----GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKH-DFGDLSSVGFEEALIKWPKGVPGIQCIWN 1356 (1690)
Q Consensus 1283 tKLN~IRq~I~lE----dse~al~LfdklLe~~P~d~eL-~L~AayL~~k-~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~ 1356 (1690)
.|..-+..||-.+ +.....-.+.+++..++.+.++ .=|++|+.+. +.+..+..++-.++..+|--.- +|-
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd----L~~ 385 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD----LWK 385 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH----HHH
Confidence 3445577777644 7788888899999999999999 6678885443 2355666888888888887777 887
Q ss_pred HHHHHHHhc
Q 000307 1357 QYVEYALQN 1365 (1690)
Q Consensus 1357 QLiq~Al~~ 1365 (1690)
+++ .|++-
T Consensus 386 ral-lAleR 393 (881)
T KOG0128|consen 386 RAL-LALER 393 (881)
T ss_pred HHH-HHHHh
Confidence 777 44443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.84 E-value=3.6 Score=48.19 Aligned_cols=93 Identities=14% Similarity=0.019 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPt---SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aY 1124 (1690)
++|+|+.|-..|..-+.-.|+ .+.++|-|+..||.+++.++|-..|..+++-.|++-+.--+++..+ ...+++-+-
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg-~~~~~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG-VSLGRLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH-HHHHHhcCH
Confidence 457899999999999999999 5799999999999999999999999999999999988322222222 111233388
Q ss_pred HHHHHHHHHhhhcCCCCc
Q 000307 1125 DAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr 1142 (1690)
++|...|.+..+.+ |+.
T Consensus 232 d~A~atl~qv~k~Y-P~t 248 (262)
T COG1729 232 DEACATLQQVIKRY-PGT 248 (262)
T ss_pred HHHHHHHHHHHHHC-CCC
Confidence 99999999999999 774
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=83.34 E-value=1.9 Score=32.72 Aligned_cols=29 Identities=34% Similarity=0.584 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000307 1051 GMKKALSLLSRALEADPTSEILWITYLLI 1079 (1690)
Q Consensus 1051 ~yDAALdLLsrALEINPtSAeaWyeyl~l 1079 (1690)
..+.|-.+|.+++...|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 46778888999999999999999988877
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.36 E-value=72 Score=37.78 Aligned_cols=190 Identities=16% Similarity=0.106 Sum_probs=114.6
Q ss_pred HhcCCCCHH--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1097 VKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1097 VelaP~NY~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
|...|.+-+ -++-=++.+ .|++|+.-|+.+-+.+ |- |.+.-.+++.+++-+-..|+|+.|+..++
T Consensus 29 ~~~~p~~~LY~~g~~~L~~g--------n~~~A~~~fe~l~~~~-p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~d 95 (254)
T COG4105 29 VYNLPASELYNEGLTELQKG--------NYEEAIKYFEALDSRH-PF----SPYSEQAQLDLAYAYYKNGEYDLALAYID 95 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcC-CC----CcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344444433 556667888 9999999999999887 33 23447889999999999999999999999
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHH-H
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-K 1253 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnal-A 1253 (1690)
|... +-+.++. + +...||.- +. .-+.|+|+. -||.-+. |
T Consensus 96 rFi~--lyP~~~n-~---dY~~Ylkg------------Ls-----------------~~~~i~~~~-----rDq~~~~~A 135 (254)
T COG4105 96 RFIR--LYPTHPN-A---DYAYYLKG------------LS-----------------YFFQIDDVT-----RDQSAARAA 135 (254)
T ss_pred HHHH--hCCCCCC-h---hHHHHHHH------------HH-----------------HhccCCccc-----cCHHHHHHH
Confidence 9886 5556652 1 22233211 11 122232222 1222211 1
Q ss_pred HHHHHHHHHHhhcCCcchhhhhcccchhHHHHHH-----------H-HHHHHhcchHHHHHHHHHHHHhCCCcchh----
Q 000307 1254 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH-----------I-WCMAVLNGLECSMNLLEKYIKLYPSCLEL---- 1317 (1690)
Q Consensus 1254 L~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~-----------I-Rq~I~lEdse~al~LfdklLe~~P~d~eL---- 1317 (1690)
..++ -+....|-|.+= . .+...+|-. | |.|..-.-...|++-|+.+++.||.-...
T Consensus 136 ~~~f-~~~i~ryPnS~Y--a-----~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL 207 (254)
T COG4105 136 FAAF-KELVQRYPNSRY--A-----PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREAL 207 (254)
T ss_pred HHHH-HHHHHHCCCCcc--h-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHH
Confidence 1122 123332222111 1 112222222 2 22222347899999999999999988776
Q ss_pred -HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc
Q 000307 1318 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1318 -~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
.|.-+|+. .++.++|-.. ..+|..++-+.+
T Consensus 208 ~~l~eaY~~-lgl~~~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 208 ARLEEAYYA-LGLTDEAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHH-hCChHHHHHH-HHHHHhcCCCCc
Confidence 56677777 4446666665 788888887777
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.8e+02 Score=39.77 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
..+++|.|+.++.|++.-+|. .+..++|-..|.+-+.-.+.+..--+-.+..|.+
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 457899999999999999999 9999999888877666544443333333444444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.17 E-value=1.2 Score=53.55 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=53.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
+-|.|+.|++-|++++..+|.+++.+..-+..|.+.+.-..|..-|..||.++ +.|.
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~ 165 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYV 165 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHH
Confidence 46899999999999999999999999999999999999999999999999999 6666
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=81.83 E-value=18 Score=44.46 Aligned_cols=186 Identities=10% Similarity=0.035 Sum_probs=111.4
Q ss_pred cchhHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CCCcchh-HHHHHHHhh---ccCCCccHHHHHHHHHhCCCCCc
Q 000307 1278 RSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKL----YPSCLEL-VLMKARLQK---HDFGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1278 k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~----~P~d~eL-~L~AayL~~---k~m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
-+..+.-+|+|..|-...|.+..++|.+.+=.. .+....+ .+||--|-. .+-.+.|+.+++.+|.......+
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344566678777777777999999999987666 4555556 778877777 33345788999998888877777
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHH--HHHHHhhhcccccccchhhcccCCCCCC-C------------------CC
Q 000307 1350 GIQCIWNQYVEYALQNGRHDFAAELMDR--WFHSVWKVQYSQVEISDPLVADMSHSSP-E------------------ST 1408 (1690)
Q Consensus 1350 g~qcaW~QLiq~Al~~e~~d~ai~L~~~--ff~gia~~Q~~~deALD~lr~g~s~i~~-e------------------s~ 1408 (1690)
=.-|++=..-...|...+......+.+. ||.--++.+.....++++.-=....... + ..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 7778877777777766444333333333 6666666665333333322111000000 0 00
Q ss_pred CCCCcccccccccchhhhhHHHHH-HHHHhhhcChHHHHHHHHHHHhhccCCcH-HHHHHHHHHHHhc
Q 000307 1409 STSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHF-KHCVREHAMLLLI 1474 (1690)
Q Consensus 1409 s~~vSDfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~AYDkALk~np~N~~-i~cLNNYAYFLSl 1474 (1690)
......-| |..+= .=...|.|+.++|..|++++++.+|+.++ .-++.|.--|..+
T Consensus 298 ~~~~~~dY-----------Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 298 SLEKMQDY-----------WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHF 354 (374)
T ss_pred cccccccH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Confidence 00011112 22221 22345689999999999999999997643 3344444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=81.43 E-value=3.5 Score=51.36 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHhCCCcchhHHHHHH-HhhccCCCccHHHHHHHHHhCCCCCc-hhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLELVLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL~L~Aay-L~~k~m~e~Ai~vfe~aL~~~PkNa~-g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
+.+.+..+++.+++.||..+=..+..++ ..+++-.+.|+..|+.++....+=.+ -|.|.|....-+++.. +|++|.+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHHHHH
Confidence 6788999999999999998877555555 56666678999999998853333333 6899998888777755 9999998
Q ss_pred HHHH-------------HHHHHhhhcc-cc-------cccchhhcc
Q 000307 1374 LMDR-------------WFHSVWKVQY-SQ-------VEISDPLVA 1398 (1690)
Q Consensus 1374 L~~~-------------ff~gia~~Q~-~~-------deALD~lr~ 1398 (1690)
...+ |+.++++.+. +. ++|.+.+++
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 8877 6777777776 44 555555553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.09 E-value=0.6 Score=52.77 Aligned_cols=33 Identities=39% Similarity=0.835 Sum_probs=28.7
Q ss_pred ccccCCCCCCC-cceeecccccccCCCCcchhhh
Q 000307 866 YTCNLAIDPLW-PLCMYELRGKCNNDECPWQHVK 898 (1690)
Q Consensus 866 ~t~s~~idp~~-~lC~fel~G~CNd~~C~wQH~~ 898 (1690)
-..|+.+||.. |-|||-|-|+||+..|++-|..
T Consensus 250 cnlsheldprripacryfllgkcnnpncryvhih 283 (377)
T KOG1492|consen 250 CNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIH 283 (377)
T ss_pred CCcccccCccccchhhhhhhccCCCCCceEEEEe
Confidence 34589999975 8999999999999999999864
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.06 E-value=20 Score=48.00 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=94.2
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccch
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl 1121 (1690)
-+++++.+||..+.+-|.-.|+++-+...=+....+++...++. -|..|++.-+.+.. |-.+|..++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~------- 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLG------- 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHh-------
Confidence 46789999999999999999999988888888888899999998 56667776666665 778899999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHH---HHHhhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ---RISRLLI 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~---tL~rLEq 1178 (1690)
.+++|..+|++....+ |. .+.++.++-.|.+-++|.++=+ .++++++
T Consensus 92 -~~d~~~~~Ye~~~~~~-P~--------eell~~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 92 -KLDEAVHLYERANQKY-PS--------EELLYHLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred -hhhHHHHHHHHHHhhC-Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999988887 55 5899999999999999876533 3555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.91 E-value=4.4 Score=48.25 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
..|++..|..+|+.+|..+|+++++..-|+..|...+..++++..+...=.-..+.-+.. +..+..|-.+..+-++
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~---l~a~i~ll~qaa~~~~- 221 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG---LQAQIELLEQAAATPE- 221 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH---HHHHHHHHHHHhcCCC-
Confidence 458889999999999999999999999999999999999998887765322222222222 1121111111112222
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+..+++....+ ||. .|.-+.+++.|...|+++.|+..|=.|..
T Consensus 222 ~~~l~~~~aad-Pdd-------~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD-PDD-------VEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344444555 877 89999999999999999999998888875
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=80.34 E-value=55 Score=38.04 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHHHHHHHhh-cCCcchhhhhcccchhHHHHHHHHHHHH--hc-----chHHHHHHHHHHHHhCCCcchh
Q 000307 1246 DEKQRAIKLIEMAVNSVELY-SNGESLEKETNLRSAHCFAVNHIWCMAV--LN-----GLECSMNLLEKYIKLYPSCLEL 1317 (1690)
Q Consensus 1246 dEPdnalAL~smA~dYY~~~-~ndEsla~~~n~k~d~~tKLN~IRq~I~--lE-----dse~al~LfdklLe~~P~d~eL 1317 (1690)
++++.+...++.|+++++.. ..+. ......++++..+|.++. ++ +.+.|.++.+.+-..+|.-+.+
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~------~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDK------LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhccc------cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 57888999999999998741 1111 122235678877777775 33 7778899999999999999999
Q ss_pred H-HHHHHHhhccCCCccH-HHHHHHHHhCC
Q 000307 1318 V-LMKARLQKHDFGDLSS-VGFEEALIKWP 1345 (1690)
Q Consensus 1318 ~-L~AayL~~k~m~e~Ai-~vfe~aL~~~P 1345 (1690)
. |+-..+.+ .+..++. .++.+++..-+
T Consensus 124 ~~L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 124 FLLKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 4 55555555 4355555 77777777655
|
It is also involved in sporulation []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 6e-14
Identities = 115/830 (13%), Positives = 228/830 (27%), Gaps = 298/830 (35%)
Query: 820 NQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLC 879
+ H+H +FE E D +++ + V ++ C D
Sbjct: 1 HHHHHHMDFETGEHQYQYKD------ILSVFEDAFVD--------NFDCKDVQD------ 40
Query: 880 MYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDI 939
+ + +E H+ + T LSK ++
Sbjct: 41 --MPKSILSKEEI--DHI------------------IMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 940 LTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDG 999
+ V ++L+ + Y+ + L + P S++
Sbjct: 79 V---QKFVE-EVLRIN-YK------------F---LMSPIKTEQRQP-------SMMTRM 111
Query: 1000 RIECIGS-WNRQSSF---FRSRNGVLNKLKQVELSNEQCVEMALLILNQDAN-KLEGMK- 1053
IE +N F SR KL+Q ALL L N ++G+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNVLIDGVLG 160
Query: 1054 --K----ALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1107
K LS ++ +I W+ + + S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN-----------LKNCN-----------SPETV 198
Query: 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 1167
L + L +++D + S ++
Sbjct: 199 LEMLQK---LLYQID------PNWTSRSDHSSNIKL---------------------RIH 228
Query: 1168 KAIQRISRLLIPATGSNDRHSLF-LSDI----------LTC---LTISDKLIFWVCCVYL 1213
+ RLL + L L ++ L+C LT K +
Sbjct: 229 SIQAELRRLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 1214 VIYRKLPDAVLQLLECE-KELFA--IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGES 1270
+ L + L E K L +D P D + + ++ + ES
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSII-----AES 336
Query: 1271 LEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG 1330
+ + H+ C + +E S+N+LE P+ + F
Sbjct: 337 IRDGLA-TWDN---WKHVNCDKLTTIIESSLNVLE------PA----------EYRKMFD 376
Query: 1331 DLSSVGFEE-ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQ 1389
L SV F A I P + + IW ++ + +L
Sbjct: 377 RL-SV-FPPSAHI--PTIL--LSLIWFDVIKSDVM----VVVNKLHKY------------ 414
Query: 1390 VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1449
S+ + + ++ L ++ + NE L
Sbjct: 415 --------------------------SLVEKQPKESTISIPSIYLELKVKLE-NEYAL-- 445
Query: 1450 DAALKAAASEHFKHCVREHAMLL---LINESEPKEGAPISWQLKLLNSY--------LDR 1498
H ++ I ++ + + L+ Y L
Sbjct: 446 ------------------HRSIVDHYNIPKTFDSDDLIPPY----LDQYFYSHIGHHLKN 483
Query: 1499 ARSLPYLKLLPRQFINNIERPR-LQQLIDNLLSPVSSDFSLVNLVLEV-CYGPSLL---P 1553
+ L F++ R L+Q I + + ++ S++N + ++ Y P + P
Sbjct: 484 IEHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 1554 RNFSKLKDLVDFVEGIME-IVPSNY----QLAFSVFKLLNKDHNPNITDA 1598
+ + ++DF+ I E ++ S Y ++A L + +A
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIA------LMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 7e-13
Identities = 96/740 (12%), Positives = 215/740 (29%), Gaps = 211/740 (28%)
Query: 775 YHSKGNKFPTT-MNHSTSVLLSPPILRGAF------GHLKSELCIALSNQSGNQHNHGRN 827
+H F T + +L + AF ++ LS +
Sbjct: 2 HHHHHMDFETGEHQYQYKDIL--SVFEDAFVDNFDCKDVQDMPKSILSKE---------- 49
Query: 828 FEIEEVACVNSDKTQACYLI---ANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELR 884
EI+ + + L + + ++V+ +V + + + M ++
Sbjct: 50 -EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---------VLRINYKFLMSPIK 99
Query: 885 GKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPT 944
+ Y R++ L++D+ + + Q + + L + L P
Sbjct: 100 TEQRQPSMM--TRMYIEQRDR-LYNDNQVFA-KYNVSRLQPYLKLRQALLE----LRPAK 151
Query: 945 YIV-------GLDILKADSYQYQSVIARR-HGLCWQKCLSVSLAISSIYPKDLPADL-SL 995
++ G + D V + + W L++ S P+ + L L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNCNS---PETVLEMLQKL 205
Query: 996 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEM---ALLILN--QDANKLE 1050
+ +I+ +W +S + ++ ++ EL + LL+L Q+A
Sbjct: 206 LY--QIDP--NWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 1051 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1110
+ + +IL T F T+ + S+ H+ +
Sbjct: 261 AF-------------NLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTL------ 298
Query: 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1170
TP D S+L + D L ++L +
Sbjct: 299 ----TP--------DEVKSLLLKYLDCRPQD----------LPREVLTTNPR------RL 330
Query: 1171 QRISRLLI--PATGSN------DRHSLFLSDILTCLTISD-KLIFWVCCVYLVIYR---K 1218
I+ + AT N D+ + + L L ++ + +F L ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAH 386
Query: 1219 LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1278
+P +L L+ W V D + VN + YS +EK+
Sbjct: 387 IPTILLSLI----------WFDVIKSDVM---------VVVNKLHKYS---LVEKQPKES 424
Query: 1279 SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFE 1338
+ + + Y++L + + +
Sbjct: 425 TIS------------IPSI---------YLELKVKLENEYALHRSI-------VDHYNIP 456
Query: 1339 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSV-W---KVQYSQVEISD 1394
+ P + + ++ + L+N H L F + K+++ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 1395 P-----LVADM----SHSSPESTSTSDPEFSVSNRNQMDVMFG---------YLNLSLHR 1436
+ + + +DP++ +D + Y +L L
Sbjct: 517 SGSILNTLQQLKFYKPYICD-----NDPKYERLVNAILDFLPKIEENLICSKYTDL-LRI 570
Query: 1437 LLQNDWNEARLAIDAALKAA 1456
L + +EA + +A +
Sbjct: 571 ALMAE-DEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 2e-11
Identities = 90/605 (14%), Positives = 171/605 (28%), Gaps = 177/605 (29%)
Query: 706 EPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPE-----RRIQEAPFQIQD 760
+ + S E+ Q + + I+ +
Sbjct: 57 SKDAVSGTLRLFWT---------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQ 104
Query: 761 KCLVEKGLLEFHSTYHSKGNKF-------PTTMNHSTSVL--LSPP---ILRGAFGHLKS 808
++ + +E ++ F L L P ++ G G K+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 809 ELCIALSNQSGNQHNHGRNFEIE--EVACVNSDKT-----QA-CYLIA---NSKPDIVKG 857
+ + + Q +F+I + NS +T Q Y I S+ D
Sbjct: 165 WVALDVCLSYKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 858 YVGK--EMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAG 915
+ + + L + C+ L + + F NL
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNAF-----NL-------S 265
Query: 916 CQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCL 975
C+I L + T + D L A + + S+ L +
Sbjct: 266 CKI--------------L-----LTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 976 SVSLAISSIYPKDLPAD--------LSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQV 1027
S+ L P+DLP + LS+I + + + +W+ ++ N +KL +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVN--CDKLTTI 358
Query: 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD---PTS--EILWITYLLIFYS 1082
E + + + M LS+ PT ++W F
Sbjct: 359 ---IESSLN------VLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIW------FDV 399
Query: 1083 NTNSVGK--DDMFSYSV--KHN-EGSYALWLMYINSRTPLN-----HR--LDAYDAALSV 1130
+ V + + YS+ K E + ++ +Y+ + L HR +D Y+ +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 1131 LCRCASASDGDEM-------HASAC------------ILDL-FLQMLQCFCMSGNTEKAI 1170
D+ H LD FL+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--------------- 504
Query: 1171 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQ-LLEC 1229
Q+I + S + + L L I C Y +L +A+L L +
Sbjct: 505 QKIRH-----DSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKI 555
Query: 1230 EKELF 1234
E+ L
Sbjct: 556 EENLI 560
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 5e-07
Identities = 99/610 (16%), Positives = 180/610 (29%), Gaps = 164/610 (26%)
Query: 78 SFSDDDSGSDTEDYRHKTAFENKSNTTRVDG-SGRPPTSSAVKV---KNLQQTARNVSKA 133
+F D+ D +D K+ + +D S L + V K
Sbjct: 28 AFVDNFDCKDVQDMP-KSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 134 IPKKLSPSRTLTTTRNHGGANSWV-------SRPPS------VDQRSRVRNFSIKTKLGS 180
+ + L N+ ++ R PS ++QR R+ N
Sbjct: 83 VEEVLRI--------NYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYN--------- 121
Query: 181 LECGDQVGLRNSKLQDLRQQ--IALRESELKLKAAQQ---------NKD-LVIDSCENYH 228
+QV +K R Q + LR++ L+L+ A+ K + +D C +Y
Sbjct: 122 ---DNQV---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY- 174
Query: 229 LGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRS 288
++ K K + L + P T V E + D N RS
Sbjct: 175 --KVQCKMDFK----I-----FWLNL-KNCNSPET-----VLEMLQKLLYQIDPNWTSRS 217
Query: 289 QKDI-PRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNA------SC-------N 334
+ RI S + P EN L V+ +V N A SC
Sbjct: 218 DHSSNIKLRIHSIQ---AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 335 QSDRDSRRVNTGPVLHNTSQLANMTSSN----FLKNAERIESDPASTAAGCHP---SSFL 387
+ D T + +T LK + D +P S
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII- 333
Query: 388 SNATREQNVMENSEYTKAISGDKID---GPSFNNV----HQVNTASLGNFSGNGNVS--- 437
A ++ + + K ++ DK+ S N + ++ L F + ++
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 438 -----GNSNVDIQSLLDMEELLDKELEEAQEHRRICEI-----EERKALKAYRKAQRALI 487
+ ++ + +L L E Q I E + L+ R+++
Sbjct: 392 LSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 488 EANASCTKLYR-QRELCSARFRSFVMDDSNLLWSSGQH------ETLGNEF-----DLS- 534
+ Y + S D G H F D
Sbjct: 451 DH-------YNIPKTFDSDDL-IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 535 -----KHVSGNMHLAPTSTHQMQ-----SGYVGYNQGGYDSSMQCINGDLQNFSHEHENG 584
+H S + + + + +Q Y+ N Y+ + +N + +F + E
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVN-AILDFLPKIE-- 556
Query: 585 QNLGSEPCSE 594
+NL ++
Sbjct: 557 ENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 7e-06
Identities = 102/718 (14%), Positives = 188/718 (26%), Gaps = 255/718 (35%)
Query: 441 NVDIQSLLDMEE--LLDKELEE-------AQEHRRICEIEERKALKAYRKAQRALIEAN- 490
N D + + DM + L +E++ R+ K + +K ++ N
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 491 ----ASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQ------------HETLGN---EF 531
+ RQ + + + + L++ Q + L E
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 532 DLSKHV-------SGNMHLA-----PTSTHQMQSGYVGY-NQGGYDSSMQCINGDLQNFS 578
+K+V SG +A + + N +S + LQ
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLL 206
Query: 579 H--------EHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEE 630
+ ++ N+ S Q L + +N L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------------------- 247
Query: 631 ACQLDLESVQ-PN----FEYQQKDQIAEGRQIS-TDYRHNNKLSAVSS---QDPLLLEAT 681
L L +VQ F K + R TD+ + +S L +
Sbjct: 248 ---LVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 682 LRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDI 741
L + + P
Sbjct: 304 K--SLLLK------------YLDCRPQ--------------------------------- 316
Query: 742 GGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTY----HSKGNKFPTTMNHSTSVLLSPP 797
D P + P ++ ++ + + + +T+ H +K T + S +V L P
Sbjct: 317 ---DLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPA 369
Query: 798 ILRGAFGHLKSELCIALSNQSGNQHNHGRNFE----I-EEVACV--NSDKTQACYLIANS 850
R F L + F I + + ++ N
Sbjct: 370 EYRKMF----DRLSV---------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 851 KPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHD- 909
V K+ T ++ P EL+ K N+ LH
Sbjct: 411 --LHKYSLVEKQPKESTISI------PSIYLELKVKLENE--------------YALHRS 448
Query: 910 --DSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRH 967
D + IP+ + D++ P D Y Y I H
Sbjct: 449 IVDHYN--------IPKTFDS--------DDLIPPY----------LDQYFYSH-IG-HH 480
Query: 968 GLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGS-WNRQSSFFRSRNGVLNKLKQ 1026
+ ++L ++ D + + +I + WN S +LN L+Q
Sbjct: 481 LKNIEHPERMTL-FRMVF-----LDFRFL-EQKIRHDSTAWNASGS-------ILNTLQQ 526
Query: 1027 VEL----------SNEQCVEMALL--ILNQDANKLEGMKKALSLLSRALEADPTSEIL 1072
++ E+ V A+L + + N + K LL AL I
Sbjct: 527 LKFYKPYICDNDPKYERLVN-AILDFLPKIEENLICS--KYTDLLRIALM-AEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 66/465 (14%), Positives = 141/465 (30%), Gaps = 119/465 (25%)
Query: 77 ISFSDDDSGSDTEDYRHKTAFENKSN-TTRVDGSGRPPT---SSAVKVKNLQQTA----- 127
++ + +S + K ++ N T+R D S S +++ L ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 128 ----RNV-SKAIPKKLSPS-RTLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSL 181
NV + + S + L TTR + + + + S+ +L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--------ATTTHISLDHHSMTL 298
Query: 182 ECGDQVGL----RNSKLQDLRQQIALRESELKLKAAQQNKDLVIDSCENYHLGRLDQ-KE 236
+ L + + QDL ++ L + +L ++ +S + L D K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLS-------IIAESIRD-GLATWDNWKH 349
Query: 237 PDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSR 296
+ +L +S++ V EP R V IP
Sbjct: 350 VNCDKLTT-----------------IIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTIL 391
Query: 297 IESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLA 356
+ + W V +V+ VV + S + ++ + +
Sbjct: 392 LS---LIWFD-------VIKSDVMVVVNKLH--KYSLVEKQPKESTIS----IPSIYLEL 435
Query: 357 NMTSSNFLKNAER--IES-------DPASTAA-----------GCHPSSFLSNATREQNV 396
+ N R ++ D G H L N + +
Sbjct: 436 KVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERM 490
Query: 397 ME------NSEYTKAISGDKI--DGPSFNNVHQVNTASLGNFSG-NGNVSGNSNVDIQSL 447
+ + + KI D ++N + +L + N + +
Sbjct: 491 TLFRMVFLDFRFLEQ----KIRHDSTAWNASGSI-LNTLQQLKFYKPYICDNDPKYERLV 545
Query: 448 LDMEELLDKELEEA---QEHRRICEI---EERKAL--KAYRKAQR 484
+ + L K +EE ++ + I E +A+ +A+++ QR
Sbjct: 546 NAILDFLPK-IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-04
Identities = 35/471 (7%), Positives = 120/471 (25%), Gaps = 60/471 (12%)
Query: 1044 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKD---DMFSYSVKHN 1100
+ L+ K+ + + P +W L + + + + + +
Sbjct: 74 KHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133
Query: 1101 EG--SYALWLM---YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQ 1155
G +LWL Y+ + + + + + S + +L
Sbjct: 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193
Query: 1156 MLQCFCMSGNTEKAIQRISR--------LLIPATGSNDRHSLFLSDILTCL-TISDKLIF 1206
L+ + E+ QR+ L P + + + I
Sbjct: 194 FLEHWKPVNKFEEQ-QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIG 252
Query: 1207 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE-KQRAIKLIEMAVNSVEL- 1264
+ Y+ D + ++ L + + + ++ + + + +
Sbjct: 253 ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWE 312
Query: 1265 YSNGESLEKETNLRSAHCF---AVNHI------------WCMAVLNGLECSMNLLEKYIK 1309
N L + + A H+ + L+ +
Sbjct: 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372
Query: 1310 LYPSCLELVLMKARL--QKHDFGDLSSVGFEEALIKWPKGV------------------P 1349
P+ L + ++ + + + +
Sbjct: 373 CIPNSAVLAFSLSEQYELNTKIPEIETT-ILSCIDRIHLDLAALMEDDPTNESAINQLKS 431
Query: 1350 GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTS 1409
+ ++ Y+ + + ++ + V + + + + ++
Sbjct: 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP-DIYLENAYIEYHISKDTKTAC 490
Query: 1410 TSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH 1460
+ + YL+ ++ N+ ++ + ++++ + H
Sbjct: 491 KVLELGLKYFATDGEYINKYLDFLIY---VNEESQVKSLFESSIDKISDSH 538
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 8e-04
Identities = 49/382 (12%), Positives = 109/382 (28%), Gaps = 39/382 (10%)
Query: 1044 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGK-DDMFSYSVKHNEG 1102
+ + + SL R L+ + LW+ Y+ + K +++ +++ E
Sbjct: 22 RRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN 80
Query: 1103 ---SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA--SDGDEMHASACILDLFLQML 1157
SY L+ YI + + + R E+ +L L +
Sbjct: 81 YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI 140
Query: 1158 QCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW-------VCC 1210
+ G+T Q + S+ + L L + + + +
Sbjct: 141 TGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200
Query: 1211 VY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSN 1267
++ L + + E + + +E + + + V
Sbjct: 201 IHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEA 260
Query: 1268 GESLEKETNLRSAHCFA------------VNHIWCMAVLNGLECSMNLLEKYIKLYPSCL 1315
K A +NH+ + GLE L +
Sbjct: 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPH 320
Query: 1316 ELVLMKARLQKHDFGDLSSVG--FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373
+ A ++ + G ++ F L+K P + ++ + L+ G + A
Sbjct: 321 VFI-YCAFIEYYATGSRATPYNIFSSGLLKHPDSTL----LKEEFFLFLLRIGDEENARA 375
Query: 1374 LMDRWFHS--VWKVQYSQVEIS 1393
L R + +W + E
Sbjct: 376 LFKRLEKTSRMWD-SMIEYEFM 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1690 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.78 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.36 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.12 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.95 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.92 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.77 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.62 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.57 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 95.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.62 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 95.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 93.58 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 84.76 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.7e-21 Score=159.55 Aligned_cols=363 Identities=12% Similarity=0.044 Sum_probs=256.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHH
Q ss_conf 99999872102476565999999999999829998799999999887288982188899999841999999----99999
Q 000307 1035 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMY 1110 (1690)
Q Consensus 1035 i~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mY 1110 (1690)
+++|..++. .|+|+.|+..+.++|+.+|+++.+|+.++.+|..++..+++.+.|++|++.+|.+.. |+..|
T Consensus 3 l~la~~~~~-----~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 77 (388)
T d1w3ba_ 3 MELAHREYQ-----AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77 (388)
T ss_dssp CTHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999998-----699999999999999868998999999999999869999999999999985999899999999996
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 85279865216889999999998530389994001121379999999999660589999999996305336999953140
Q 000307 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1190 (1690)
Q Consensus 1111 INsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lS 1190 (1690)
...+ .|++|+..+....... +.. .+........+...+.+..+......... ...... ...
T Consensus 78 ~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 138 (388)
T d1w3ba_ 78 KERG--------QLQEAIEHYRHALRLK-PDF-------IDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLY-CVR 138 (388)
T ss_dssp HHHT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCT-HHH
T ss_pred HHHC--------CCCCCCCCCCCCCCCC-CCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-CCC
T ss_conf 4200--------0222222222121122-222-------22222222222222222222222111222--222222-222
Q ss_pred HHHHHHHHCCCCCCCHHHHHH-----H--HHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999752178320557878-----8--876303508898411430232217799865530326669999999999987
Q 000307 1191 LSDILTCLTISDKLIFWVCCV-----Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1191 LsKi~~YLt~sDkc~AwLa~i-----Y--li~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~ 1263 (1690)
......+........+..... + .......+|.++...+..++|... +.+.++.+|+++-+++.+| ..|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~l~-~~~~ 214 (388)
T d1w3ba_ 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH---FEKAVTLDPNFLDAYINLG-NVLK 214 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHH---HHHHHHHCCCCHHHHHHHH-HHHH
T ss_conf 22222221100013567888874025861068998636301024719999999---9999984946499999971-5522
Q ss_pred HHCCCCCHHHHHCCC------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHH
Q ss_conf 312895113331015------325777899999997116699999999999949984116--988999830247975099
Q 000307 1264 LYSNGESLEKETNLR------SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSV 1335 (1690)
Q Consensus 1264 ~~~ndEsla~~~s~k------~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~ 1335 (1690)
. .++-+.+.....+ .....-.++-..+....+.+.++..|++.++..|.+.+. .+...|...++ .++++.
T Consensus 215 ~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~ 292 (388)
T d1w3ba_ 215 E-ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAED 292 (388)
T ss_dssp T-TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHH
T ss_conf 0-05299999999985777554799999999999987899999999999998499989999999999997487-999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999982999985267999999999996599358999999999988452255222201000367889999999997533
Q 000307 1336 GFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEF 1415 (1690)
Q Consensus 1336 vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDF 1415 (1690)
.|+.++...|.+.. +|..+.......+++++++...++ +++ +.+ . ..+.
T Consensus 293 ~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~--------------al~--------~~p----~-~~~~ 341 (388)
T d1w3ba_ 293 CYNTALRLCPTHAD----SLNNLANIKREQGNIEEAVRLYRK--------------ALE--------VFP----E-FAAA 341 (388)
T ss_dssp HHHHHHHHCTTCHH----HHHHHHHHHHTTTCHHHHHHHHHH--------------HTT--------SCT----T-CHHH
T ss_pred HHHHHHCCCCCCCH----HHHHHHHHHHHCCCHHHHHHHHHH--------------HHH--------HCC----C-CHHH
T ss_conf 99865404873001----015799999987899999999999--------------998--------688----9-8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 3353221225667989999884202969999999999711027708999999898881
Q 000307 1416 SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1416 y~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
+ -.+|.+|++ .|+.++|...|++||+..|++ ..++.+.+.-+.
T Consensus 342 ~-----------~~la~~~~~--~g~~~~A~~~~~~al~l~P~~--~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 342 H-----------SNLASVLQQ--QGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLK 384 (388)
T ss_dssp H-----------HHHHHHHHT--TTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 9-----------999999998--599999999999999709998--999999999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.4e-16 Score=126.04 Aligned_cols=337 Identities=11% Similarity=-0.002 Sum_probs=202.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999887288982188899999841999999----99999852798652168899999999985303899940011213
Q 000307 1074 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1149 (1690)
Q Consensus 1074 yeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~I 1149 (1690)
++++..+++.|+-.++...|+++++.+|.+.. ++..|...+ .|++|+..|.+..+.+ |+.
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~-p~~------- 66 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR--------RLDRSAHFSTLAIKQN-PLL------- 66 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------
T ss_conf 999999998699999999999999868998999999999999869--------9999999999999859-998-------
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH-------HHHHCCCCHH
Q ss_conf 799999999996605899999999963053369999531409999997521783205578788-------8763035088
Q 000307 1150 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-------LVIYRKLPDA 1222 (1690)
Q Consensus 1150 LDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~iY-------li~YrvLPGd 1222 (1690)
.+.+..+..+|...|++++|+..+..... ...... .........+........+...... ..........
T Consensus 67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
T d1w3ba_ 67 AEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFI-DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999996420002222222221211--222222-222222222222222222222211122222222222222222
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-------CCCCHHHHHHHHHHHHHHHC
Q ss_conf 98411430232217799865530326669999999999987312895113331-------01532577789999999711
Q 000307 1223 VLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLN 1295 (1690)
Q Consensus 1223 iy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-------s~k~d~~tKLNlIRq~I~lE 1295 (1690)
..........+... +.+.+...|+++.+...+| ..+.. .++-..+... +++. ...-.++-..+....
T Consensus 144 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 144 LLKALGRLEEAKAC---YLKAIETQPNFAVAWSNLG-CVFNA-QGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHTTSCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HHHHT-TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHH---HHHHHCCCCCHHHHHHHHC-CCCCC-CCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCC
T ss_conf 22110001356788---8874025861068998636-30102-471999999999999849464-999999715522005
Q ss_pred CHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 6699999999999949984116--98899983024797509999999982999985267999999999996599358999
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1296 dse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~ 1373 (1690)
+.+.++..|.+.++..|..... .+...|+..++ .+.++..|++++++.|++.. +|..+.......+++++++.
T Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIELQPHFPD----AYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCSSCHH----HHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHH
T ss_conf 29999999998577755479999999999998789-99999999999984999899----99999999997487999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999998845225522220100036788999999999753333532212256679899998842029699999999997
Q 000307 1374 LMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAAL 1453 (1690)
Q Consensus 1374 L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkAL 1453 (1690)
.++..... .+ ...+.+ ..++.++.+ .|+.++|...|++||
T Consensus 293 ~~~~~~~~---------------------~~------~~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~al 332 (388)
T d1w3ba_ 293 CYNTALRL---------------------CP------THADSL-----------NNLANIKRE--QGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHH---------------------CT------TCHHHH-----------HHHHHHHHT--TTCHHHHHHHHHHHT
T ss_pred HHHHHHCC---------------------CC------CCCHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHH
T ss_conf 99865404---------------------87------300101-----------579999998--789999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 110277089999998988811788988566
Q 000307 1454 KAAASEHFKHCVREHAMLLLINESEPKEGA 1483 (1690)
Q Consensus 1454 k~np~N~~i~cLNNYAYFLSle~~dL~KAE 1483 (1690)
+..|++ ..++.+.|..+...| +.++|.
T Consensus 333 ~~~p~~--~~~~~~la~~~~~~g-~~~~A~ 359 (388)
T d1w3ba_ 333 EVFPEF--AAAHSNLASVLQQQG-KLQEAL 359 (388)
T ss_dssp TSCTTC--HHHHHHHHHHHHTTT-CCHHHH
T ss_pred HHCCCC--HHHHHHHHHHHHHCC-CHHHHH
T ss_conf 868898--999999999999859-999999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.6e-14 Score=111.30 Aligned_cols=248 Identities=15% Similarity=0.061 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----
Q ss_conf 2689999999872102476565999999999999829998799999999887288982188899999841999999----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1030 d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~---- 1105 (1690)
+.+.+++.|+.++.. |+++.|+..|.++|+.||+++.+|+.++.+|..++...++..+|.+|++.+|.+..
T Consensus 18 ~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 92 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQE-----GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 92 (323)
T ss_dssp TCSSHHHHHHHHHHT-----TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 539999999999985-----999999999999998689989999999999998377588999998510022222222222
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999852798652168899999999985303899940011213799999999996605899999999963053369999
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
++..|...+ .++.|+..|.+..... ++. ..++.. .
T Consensus 93 la~~~~~~~--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~-----------------------------~ 127 (323)
T d1fcha_ 93 LAVSFTNES--------LQRQACEILRDWLRYT-PAY-------AHLVTP-----------------------------A 127 (323)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHTS-TTT-------GGGCC-------------------------------
T ss_pred CCCCCCCCC--------CCCCCCCCHHHHHHHC-CCH-------HHHHHH-----------------------------H
T ss_conf 222222222--------1121110002677736-106-------788876-----------------------------6
Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53140999999752178320557878887630350889841143023221779986553032666999999999998731
Q 000307 1186 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1265 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~AwLa~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~ 1265 (1690)
. .......++ .+..
T Consensus 128 ~---------------------------------------------------------------~~~~~~~~~-~~~~-- 141 (323)
T d1fcha_ 128 E---------------------------------------------------------------EGAGGAGLG-PSKR-- 141 (323)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred H---------------------------------------------------------------HHHHHCCCC-CCHH--
T ss_conf 4---------------------------------------------------------------000000010-0001--
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 2895113331015325777899999997116699999999999949984116----988999830247975099999999
Q 000307 1266 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEAL 1341 (1690)
Q Consensus 1266 ~ndEsla~~~s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL----~L~AaYL~~K~m~e~Ai~vfe~aL 1341 (1690)
.. ..+........+...|.+.++..|...+. .+...+...++ .+.++..|+.++
T Consensus 142 ------------~~---------~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al 199 (323)
T d1fcha_ 142 ------------IL---------GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE-YDKAVDCFTAAL 199 (323)
T ss_dssp ------------TT---------HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred ------------HH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHCCCCCCC
T ss_conf ------------47---------88887657999999999999971301222111036888888887-755002111222
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82999985267999999999996599358999999999988452255222201000367889999999997533335322
Q 000307 1342 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1421 (1690)
Q Consensus 1342 si~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDFy~~~~~ 1421 (1690)
...|++.. +|..+.......++++.++..+++- +. ..++ ..+.+
T Consensus 200 ~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~a--------------l~--------~~p~-----~~~a~----- 243 (323)
T d1fcha_ 200 SVRPNDYL----LWNKLGATLANGNQSEEAVAAYRRA--------------LE--------LQPG-----YIRSR----- 243 (323)
T ss_dssp HHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHH--------------HH--------HCTT-----CHHHH-----
T ss_pred CCCCCCCC----CHHHHHHCCCCCCCCHHHHHHHHHH--------------HH--------HHHC-----CHHHH-----
T ss_conf 22222211----1013330122111101378887789--------------98--------8432-----49999-----
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 12256679899998842029699999999997110277
Q 000307 1422 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1422 Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
-.||.+|++ .|+.+||...|++||...|.+
T Consensus 244 ------~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 244 ------YNLGISCIN--LGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp ------HHHHHHHHH--HTCHHHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC
T ss_conf ------999999998--789999999999999709757
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.8e-11 Score=92.06 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=62.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 22110012689999999872102476565999999999999829998799999999887288982188899999841999
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1023 ~Le~~~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~ 1102 (1690)
-|+..|.+.+.|..+|..+... |+++.|+..+.+|++++|+.+.+|+.++.+|...+...++.++++++..+.|.
T Consensus 45 al~~~P~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 119 (323)
T d1fcha_ 45 AVQQDPKHMEAWQYLGTTQAEN-----EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 119 (323)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 9986899899999999999983-----77588999998510022222222222222222222112111000267773610
Q ss_pred CHH
Q ss_conf 999
Q 000307 1103 SYA 1105 (1690)
Q Consensus 1103 NY~ 1105 (1690)
...
T Consensus 120 ~~~ 122 (323)
T d1fcha_ 120 YAH 122 (323)
T ss_dssp TGG
T ss_pred HHH
T ss_conf 678
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=6.6e-12 Score=96.43 Aligned_cols=259 Identities=13% Similarity=0.051 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHCCCCCHHHHH----HHHHCCCCC
Q ss_conf 9999999999998299987999999998872889----------82188899999841999999999----998527986
Q 000307 1052 MKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------SVGKDDMFSYSVKHNEGSYALWL----MYINSRTPL 1117 (1690)
Q Consensus 1052 yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~----------~~ea~emlekAVelaP~NY~Lw~----mYINsr~s~ 1117 (1690)
.++|+.++.++|++||+.+++|.....++..... -.++..++++|++.+|.|+.+|. .+...+
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~--- 121 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP--- 121 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS---
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---
T ss_conf 69999999999998878589999999999997650034778778999999999999868886798988648998843---
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5216889999999998530389994001121379999-999999660589999999996305336999953140999999
Q 000307 1118 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFL-QMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT 1196 (1690)
Q Consensus 1118 ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL-~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~ 1196 (1690)
..++++|+..+......+ |.. .+... .+..+|...+++++||..+.+... .++...+
T Consensus 122 ---~~~~~~a~~~~~~al~~~-~~~-------~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-----~~p~~~~------ 179 (334)
T d1dcea1 122 ---EPNWARELELCARFLEAD-ERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----RNFSNYS------ 179 (334)
T ss_dssp ---SCCHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----TTCCCHH------
T ss_pred ---CCCHHHHHHHHHHHHHHC-CHH-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----CCCCCHH------
T ss_conf ---042899999999998559-212-------111105789998744552899999999887-----1898799------
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-
Q ss_conf 7521783205578788876303508898411430232217799865530326669999999999987312895113331-
Q 000307 1197 CLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET- 1275 (1690)
Q Consensus 1197 YLt~sDkc~AwLa~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~- 1275 (1690)
+| ..+|.++...+...+|... +.+.++..|...-.... +....-.+++...-.
T Consensus 180 ---------a~----------~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~----~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 180 ---------SW----------HYRSCLLPQLHPQPDSGPQ---GRLPENVLLKELELVQN----AFFTDPNDQSAWFYHR 233 (334)
T ss_dssp ---------HH----------HHHHHHHHHHSCCCCSSSC---CSSCHHHHHHHHHHHHH----HHHHCSSCSHHHHHHH
T ss_pred ---------HH----------HHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHCCHHHHHHHHHH
T ss_conf ---------99----------9999999982688989998---87767768999999999----9882441488999998
Q ss_pred ---CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf ---015325777899999997116699999999999949984116-9889998302479750999999998299998526
Q 000307 1276 ---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGI 1351 (1690)
Q Consensus 1276 ---s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL-~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~gi 1351 (1690)
........-.++...+....+..+++..|.+.++..|.+... ...+..+...+..++++..|+.+++++|++..
T Consensus 234 ~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~-- 311 (334)
T d1dcea1 234 WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-- 311 (334)
T ss_dssp HHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH--
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--
T ss_conf 877186605678879999999866999999999887629137999999999998789999999999999987966399--
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 79999999999965
Q 000307 1352 QCIWNQYVEYALQN 1365 (1690)
Q Consensus 1352 qcaWnQLiq~Al~~ 1365 (1690)
.|..|....+-+
T Consensus 312 --y~~~L~~~~~~e 323 (334)
T d1dcea1 312 --YLDDLRSKFLLE 323 (334)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
T ss_conf --999999998676
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=5.7e-10 Score=83.03 Aligned_cols=191 Identities=7% Similarity=0.039 Sum_probs=137.2
Q ss_pred HHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHCCCC
Q ss_conf 211001268999999987210247656599999999999982999879999999988728898-2188899999841999
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1024 Le~~~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~-~ea~emlekAVelaP~ 1102 (1690)
|.-.|.-.+++--++..+..+ +.++.|+.++.+||++||....+|+..+.++..++.+ +++...+.+|++.+|.
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~-----e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~ 110 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRD-----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 226977999999999999958-----866999999999998798876999999999998376799999999999988774
Q ss_pred CHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999----9999985279865216889999999998530389994001121379999999999660589999999996305
Q 000307 1103 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1103 NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+++ +++.|...+ .|++||..|......+ |.. .+++..+..+|...|++++||..+++...
T Consensus 111 ~~~a~~~~~~~~~~l~--------~~~eAl~~~~kal~~d-p~n-------~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLR--------DPSQELEFIADILNQD-AKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp CHHHHHHHHHHHHHHT--------CCTTHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHH-HCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2268988758888505--------3788998875554321-004-------68899887788888866789999999998
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 33699995314099999975217832055787888763035088984114302322177998655303266699999999
Q 000307 1179 PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1258 (1690)
Q Consensus 1179 ~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA 1258 (1690)
++-.+. ....+ +..++ ..+- -+...+.-++++.. +.+.++.+|++.-+.+.++
T Consensus 175 --~~p~n~------~a~~~----------r~~~l----~~~~--~~~~~~~~~~ai~~---~~~al~~~P~~~~~~~~l~ 227 (315)
T d2h6fa1 175 --EDVRNN------SVWNQ----------RYFVI----SNTT--GYNDRAVLEREVQY---TLEMIKLVPHNESAWNYLK 227 (315)
T ss_dssp --HCTTCH------HHHHH----------HHHHH----HHTT--CSCSHHHHHHHHHH---HHHHHHHSTTCHHHHHHHH
T ss_pred --HCCCCH------HHHHH----------HHHHH----HHCC--CCCHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHH
T ss_conf --797449------99988----------99999----8745--63102354776799---9999984988569999987
Q ss_pred HHHHH
Q ss_conf 99987
Q 000307 1259 VNSVE 1263 (1690)
Q Consensus 1259 ~dYY~ 1263 (1690)
..+.
T Consensus 228 -~ll~ 231 (315)
T d2h6fa1 228 -GILQ 231 (315)
T ss_dssp -HHHT
T ss_pred -HHHH
T ss_conf -7988
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=2.2e-09 Score=78.95 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf 126899999998721024---76565999999999999829998799999999887288982188899999841999999
Q 000307 1029 LSNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1029 ~d~elWi~lAl~~Lnq~~---n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~ 1105 (1690)
...++|++++-.--.... ......+.+..++.|||...|.++++|+.|+.+.-..++. ..+..
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~---------~~~~~----- 71 (308)
T d2onda1 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL---------LAEKG----- 71 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------HHHTS-----
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH---------HHHHH-----
T ss_conf 9999999999998768654332203699999999999987779999999999999870736---------88777-----
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999985279865216889999999998530389994001121379999999999660589999999996305
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+..... .+++|..+|++......|.. ..+.+..+.++...|+++.|...+++++.
T Consensus 72 --~~~~~~~--------~~~~a~~i~~ral~~~~p~~-------~~l~~~ya~~~~~~~~~~~a~~i~~~~l~ 127 (308)
T d2onda1 72 --DMNNAKL--------FSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp --CCHHHHH--------HHHHHHHHHHHHHTTTTTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHCCC--------CHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf --8763102--------45999999999998749987-------99999999999861338999999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=1.6e-10 Score=86.86 Aligned_cols=246 Identities=11% Similarity=-0.000 Sum_probs=154.7
Q ss_pred HHHCHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHH
Q ss_conf 2110012689999999872102-----47656599999999999982999879999999988728898--2188899999
Q 000307 1024 LKQVELSNEQCVEMALLILNQD-----ANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS--VGKDDMFSYS 1096 (1690)
Q Consensus 1024 Le~~~~d~elWi~lAl~~Lnq~-----~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~--~ea~emlekA 1096 (1690)
|+..|.+..+|.-....+.... ....+.++.|+..+..+|+++|.++.+|++++..+...+.. .++...|.+|
T Consensus 56 l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 135 (334)
T d1dcea1 56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135 (334)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99887858999999999999765003477877899999999999986888679898864899884304289999999999
Q ss_pred HHCCCCCHH-----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 841999999-----999998527986521688999999999853038999400112137999999999966058999999
Q 000307 1097 VKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1171 (1690)
Q Consensus 1097 VelaP~NY~-----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~ 1171 (1690)
++.+|.++. +|..|...+ .+++|+..+......+ |.. .+.+..+..+|...|++++|+.
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~--------~~~~Al~~~~~~i~~~-p~~-------~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 136 LEADERNFHCWDYRRFVAAQAAV--------APAEELAFTDSLITRN-FSN-------YSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTCC--------CHHHHHHHHHTTTTTT-CCC-------HHHHHHHHHHHHHHSCCCCSSS
T ss_pred HHHCCHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHCC-CCC-------HHHHHHHHHHHHHHCCHHHHHH
T ss_conf 85592121111057899987445--------5289999999988718-987-------9999999999998268898999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH------HHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCH
Q ss_conf 99963053369999531409999997521783205578788------876303508898411430232217799865530
Q 000307 1172 RISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLED 1245 (1690)
Q Consensus 1172 tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~iY------li~YrvLPGdiy~qne~~KEAl~I~W~yvqvlk 1245 (1690)
.+.+... ..+..+.+......+...+.. +|....- .......++..+...+..+++... +.+..+
T Consensus 200 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~a-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~ 270 (334)
T d1dcea1 200 QGRLPEN-----VLLKELELVQNAFFTDPNDQS-AWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE---LQELEP 270 (334)
T ss_dssp CCSSCHH-----HHHHHHHHHHHHHHHCSSCSH-HHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH---HHHHCT
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_conf 8877677-----689999999999882441488-9999988771866056788799999998669999999---998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHH
Q ss_conf 326669999999999987312895113331015325777899999997116699999999999949984116--988999
Q 000307 1246 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKAR 1323 (1690)
Q Consensus 1246 dEPdnalAL~smA~dYY~~~~ndEsla~~~s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaY 1323 (1690)
.+|+++.+++.+| ..|.. .+ +.+.++..|+++++..|..... -|...+
T Consensus 271 ~~p~~~~~~~~l~-~~~~~-~~----------------------------~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 271 ENKWCLLTIILLM-RALDP-LL----------------------------YEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp TCHHHHHHHHHHH-HHHCT-GG----------------------------GHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHH-HHHHH-CC----------------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 2913799999999-99987-89----------------------------999999999999987966399999999998
Q ss_pred H
Q ss_conf 8
Q 000307 1324 L 1324 (1690)
Q Consensus 1324 L 1324 (1690)
+
T Consensus 321 ~ 321 (334)
T d1dcea1 321 L 321 (334)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.6e-09 Score=78.56 Aligned_cols=114 Identities=12% Similarity=0.034 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCC
Q ss_conf 56599999999999982----9998799999999887288982188899999841999999----999998527986521
Q 000307 1049 LEGMKKALSLLSRALEA----DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1120 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEI----NPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddr 1120 (1690)
...+..|+.-+...|.. +++.+.+||.++.+|..++..++|.+.|++|++++|++.. ++..|...+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g------ 85 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG------ 85 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT------
T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHH------
T ss_conf 57999999999999876336999999999999999998799999999999854349998899960042788877------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 6889999999998530389994001121379999999999660589999999996305
Q 000307 1121 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1121 l~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.|++|+..|.+..... |+. .+.++.+..+|...|++++|+..+.+...
T Consensus 86 --~~~~A~~~~~~al~~~-p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 86 --NFDAAYEAFDSVLELD-PTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp --CHHHHHHHHHHHHHHC-TTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --7887523446899987-611-------11588899999987667999999999986
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.6e-08 Score=71.57 Aligned_cols=106 Identities=11% Similarity=-0.040 Sum_probs=71.4
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf 89998302479750999999998299998526799999999999659935899999999998845225522220100036
Q 000307 1320 MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD 1399 (1690)
Q Consensus 1320 ~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g 1399 (1690)
.+.++...+..+.+...++.++...|.+.+.....|..+....+..++++.++..+++- ++..+..
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------l~~~~~~ 284 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL--------------NENARSL 284 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------HHHHHHC
T ss_conf 99999860448989999999997622466677788999999998758799999999999--------------9887642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 788999999999753333532212256679899998842029699999999997110277
Q 000307 1400 MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1400 ~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
. ......+.+ ..+|.+|++ .|+.++|...|++||......
T Consensus 285 ~-------~~~~~~~~~-----------~~la~~~~~--~g~~~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 285 R-------LMSDLNRNL-----------LLLNQLYWQ--AGRKSDAQRVLLDALKLANRT 324 (366)
T ss_dssp T-------CHHHHHHHH-----------HHHHHHHHH--HTCHHHHHHHHHHHHHHHHHH
T ss_pred C-------CCHHHHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHHHHC
T ss_conf 6-------674799999-----------999999998--789999999999999976531
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3.5e-08 Score=70.73 Aligned_cols=122 Identities=10% Similarity=-0.097 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH---
Q ss_conf 12689999999872102476565999999999999829998799999999887288982188899999841999999---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~--- 1105 (1690)
...++|..++..+..+ |+++.|+..|.++|+++|+.+.+|+.++.+|..+++..++.++|++|++++|.+..
T Consensus 35 ~~a~~~~~~G~~y~~~-----g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 109 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSL-----GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 109 (259)
T ss_dssp HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987-----99999999999854349998899960042788877788752344689998761111588
Q ss_pred -HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf -999998527986521688999999999853038999400112137999999999966058999999
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1171 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~ 1171 (1690)
++..|..++ .+++|+..|+...... |.. ......+.-.+...+..+.+..
T Consensus 110 ~lg~~~~~~g--------~~~~A~~~~~~al~~~-p~~-------~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T d1xnfa_ 110 NRGIALYYGG--------RDKLAQDDLLAFYQDD-PND-------PFRSLWLYLAEQKLDEKQAKEV 160 (259)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999876--------6799999999998653-000-------7888999999988535878999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.2e-08 Score=69.49 Aligned_cols=99 Identities=6% Similarity=0.125 Sum_probs=44.3
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHH----HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2999879999999988728898218889999984199999999----999852798652168899999999985303899
Q 000307 1065 ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1140 (1690)
Q Consensus 1065 INPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~Lw----~mYINsr~s~ddrl~aYdkAI~aLe~las~~~p 1140 (1690)
.+|.-++++..++.++...+..++|.+.+++|++++|.++..| ..+...+ ..|++|+..+......+ |
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~-------~~~~eal~~~~~al~~~-p 109 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ-------KDLHEEMNYITAIIEEQ-P 109 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHC-T
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHH-H
T ss_conf 697799999999999995886699999999999879887699999999999837-------67999999999999887-7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 94001121379999999999660589999999996305
Q 000307 1141 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1141 Dr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+. .+++..+..++...|++++||..+.+...
T Consensus 110 ~~-------~~a~~~~~~~~~~l~~~~eAl~~~~kal~ 140 (315)
T d2h6fa1 110 KN-------YQVWHHRRVLVEWLRDPSQELEFIADILN 140 (315)
T ss_dssp TC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 42-------26898875888850537889988755543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.1e-08 Score=74.18 Aligned_cols=141 Identities=10% Similarity=-0.043 Sum_probs=99.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 22110012689999999872102476565999999999999829998-----7999999998872889821888999998
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSV 1097 (1690)
Q Consensus 1023 ~Le~~~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS-----aelWyeyl~lY~~~~~~~ea~emlekAV 1097 (1690)
.|.+.....+...-.|...+++ |+++.|+.++.++|+.+|.+ ..+++.++.+|..++...++...+++|+
T Consensus 4 ~~~~~~~~ae~~~lrA~~~~~~-----g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 4 DIREDTMHAEFNALRAQVAIND-----GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 3056621399999999999988-----89999999999998548689967999999999999998799999999999999
Q ss_pred HCCCCC--HH--------HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 419999--99--------999998527986521688999999999853038--999400112137999999999966058
Q 000307 1098 KHNEGS--YA--------LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS--DGDEMHASACILDLFLQMLQCFCMSGN 1165 (1690)
Q Consensus 1098 elaP~N--Y~--------Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~--~pDr~~~Sa~ILDvLL~LvqLY~qSGn 1165 (1690)
++.+.. .. ++..|...+ .+..|+..+....... .... ...........+..+|...|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~ 148 (366)
T d1hz4a_ 79 QMARQHDVWHYALWSLIQQSEILFAQG--------FLQTAWETQEKAFQLINEQHLE--QLPMHEFLVRIRAQLLWAWAR 148 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCT--TSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCC
T ss_conf 998750114899999988878878888--------8999998899999986750341--256788899888789998145
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999996305
Q 000307 1166 TEKAIQRISRLLI 1178 (1690)
Q Consensus 1166 ydKAI~tL~rLEq 1178 (1690)
++.++..+.....
T Consensus 149 ~~~a~~~~~~~~~ 161 (366)
T d1hz4a_ 149 LDEAEASARSGIE 161 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 6666899999888
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=4.9e-08 Score=69.72 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHH
Q ss_conf 6565999999999999829998799999999887288982188899999841999999----999998527986521688
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..++|+.|+..|.++|++||+.+.+|+.++.+|..++...++.++|++|++++|.+.. ++..|...+ .
T Consensus 22 ~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g--------~ 93 (159)
T d1a17a_ 22 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG--------K 93 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------C
T ss_pred HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------C
T ss_conf 95899999998660211000113332456788874054212888899999875446687799999999949--------9
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH--HHHCCHHHHHH
Q ss_conf 9999999998530389994001121379999999999--66058999999
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF--CMSGNTEKAIQ 1171 (1690)
Q Consensus 1124 YdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY--~qSGnydKAI~ 1171 (1690)
|++|+..|.+..... |+. .++...+.++. ...+.+.++|.
T Consensus 94 ~~eA~~~~~~a~~~~-p~~-------~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 94 FRAALRDYETVVKVK-PHD-------KDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHHS-TTC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999899998729-997-------999999999999999898999975
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=3.9e-07 Score=63.45 Aligned_cols=108 Identities=11% Similarity=0.127 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHHHCC--------CC-CCHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 001268999999987210--------24-7656599999999999982-9998799999999887288982188899999
Q 000307 1027 VELSNEQCVEMALLILNQ--------DA-NKLEGMKKALSLLSRALEA-DPTSEILWITYLLIFYSNTNSVGKDDMFSYS 1096 (1690)
Q Consensus 1027 ~~~d~elWi~lAl~~Lnq--------~~-n~~g~yDAALdLLsrALEI-NPtSaelWyeyl~lY~~~~~~~ea~emlekA 1096 (1690)
-+...++|+.+|-..... .. .+.+.++.|..++.||+++ +|.+..+|+.|+.++..++....+...+++|
T Consensus 46 ~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~ 125 (308)
T d2onda1 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 77999999999999987073688777876310245999999999998749987999999999998613389999999999
Q ss_pred HHCCCCCHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 841999999-999998527986521688999999999853038
Q 000307 1097 VKHNEGSYA-LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1097 VelaP~NY~-Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~ 1138 (1690)
++..|.++. +|..|++... +...+++|...|.+.....
T Consensus 126 l~~~~~~~~~~w~~~~~~~~----~~~~~~~ar~i~~~al~~~ 164 (308)
T d2onda1 126 LAIEDIDPTLVYIQYMKFAR----RAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHH----HHHCHHHHHHHHHHHHTST
T ss_pred HHHHCCCHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHC
T ss_conf 98715786999999999999----8278688999999999808
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.4e-06 Score=58.09 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----H
Q ss_conf 689999999872102476565999999999999829998799999999887288982188899999841999999----9
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1106 (1690)
Q Consensus 1031 ~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----L 1106 (1690)
..+|-+ +..++.. ++++.|+..|.+ +.|..+.+|+.++.+|+.++.-.++.+.|.+|++++|.+.. +
T Consensus 6 ~~l~~~-g~~~~~~-----~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~ 76 (192)
T d1hh8a_ 6 ISLWNE-GVLAADK-----KDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 76 (192)
T ss_dssp HHHHHH-HHHHHHT-----TCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHH-HHHHHHC-----CCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999-9999987-----799999999986---4898899999999999985891467878999999855234667889
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH---------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 999985279865216889999999998530389994001---------12137999999999966058999999999630
Q 000307 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA---------SACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1107 w~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~---------Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
+..|..++ .|+.|+..|+...... +..... .....++++.+..+|...|++++|++.+.+-.
T Consensus 77 g~~~~~~g--------~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 77 GMLYYQTE--------KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99998542--------4999999999999867-26736789986654363058899999999999789999999999998
Q ss_pred C
Q ss_conf 5
Q 000307 1178 I 1178 (1690)
Q Consensus 1178 q 1178 (1690)
.
T Consensus 148 ~ 148 (192)
T d1hh8a_ 148 S 148 (192)
T ss_dssp T
T ss_pred H
T ss_conf 3
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.9e-07 Score=64.42 Aligned_cols=96 Identities=10% Similarity=0.027 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHH
Q ss_conf 6565999999999999829998799999999887288982188899999841999999----999998527986521688
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|+|+.|+..|.+||+++|+++.+|+.++..|..++...++...|++|++++|.+.. ++.+|...+ .
T Consensus 15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--------~ 86 (117)
T d1elwa_ 15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN--------R 86 (117)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------C
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------C
T ss_conf 96999999999999886199601343000110110000112100134677740220267788999999812--------7
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999853038999400112137999999999
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1159 (1690)
Q Consensus 1124 YdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL 1159 (1690)
|++|+..|....... |+. .++...+..+
T Consensus 87 ~~~A~~~~~~a~~~~-p~~-------~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE-ANN-------PQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTC-TTC-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCC-------HHHHHHHHHH
T ss_conf 999999999999849-898-------9999999978
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=7.2e-08 Score=68.54 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHH
Q ss_conf 6565999999999999829998799999999887288982188899999841999999----999998527986521688
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|+|+.|+..|.++|+++|.++.+|+.++..|...+....|..+|++|++++|.+.. ++..|...+ .
T Consensus 16 ~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~--------~ 87 (201)
T d2c2la1 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME--------S 87 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT--------C
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------C
T ss_conf 86999999999999998599989999817898741000001247888888718873899999999999879--------9
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999853038
Q 000307 1124 YDAALSVLCRCASAS 1138 (1690)
Q Consensus 1124 YdkAI~aLe~las~~ 1138 (1690)
|++|+..|.......
T Consensus 88 ~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 88 YDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999998749
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.54 E-value=3.4e-07 Score=63.91 Aligned_cols=92 Identities=18% Similarity=0.118 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----
Q ss_conf 2689999999872102476565999999999999829998799999999887288982188899999841999999----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1030 d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~---- 1105 (1690)
+.+.|..+++.++.+ |+++.|+..|..+++++|+.+.+|+.++.+|...+...++..++++|++++|.+..
T Consensus 15 ~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 89 (112)
T d1hxia_ 15 YHENPMEEGLSMLKL-----ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 89 (112)
T ss_dssp GCSCHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 589999999999987-----605899998861011211110012335456410125877410000011111100000378
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999852798652168899999999985
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdkAI~aLe~l 1134 (1690)
|+..|++++ .+++|++.|.+-
T Consensus 90 la~~y~~~g--------~~~~A~~~l~~~ 110 (112)
T d1hxia_ 90 LAVSHTNEH--------NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHCC--------CHHHHHHHHHHH
T ss_conf 999999978--------999999999998
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.9e-06 Score=57.46 Aligned_cols=98 Identities=12% Similarity=0.216 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH-----
Q ss_conf 268999999987210247656599999999999982999879999999988728898218889999984199999-----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY----- 1104 (1690)
Q Consensus 1030 d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY----- 1104 (1690)
+.+.|.-++..++.. |+++.|+..|.+||++||+.+.+|+.++.+|..++..+++...|++|+++.+.|.
T Consensus 35 ~~~~~~nlG~~~~~~-----g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~ 109 (192)
T d1hh8a_ 35 HSRICFNIGCMYTIL-----KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 109 (192)
T ss_dssp CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred CHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 899999999999985-----891467878999999855234667889999985424999999999999867267367899
Q ss_pred ---------------HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---------------9999998527986521688999999999853038999
Q 000307 1105 ---------------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1105 ---------------~Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pD 1141 (1690)
.++.+|...+ .|++|++.|....... ++
T Consensus 110 ~~~~~~~~~~~e~~~n~a~~~~~~~--------~~~~A~~~l~~A~~~~-~~ 152 (192)
T d1hh8a_ 110 ILGLQFKLFACEVLYNIAFMYAKKE--------EWKKAEEQLALATSMK-SE 152 (192)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTC-CS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHCC-CC
T ss_conf 8665436305889999999999978--------9999999999998369-98
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=4.4e-06 Score=56.21 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH-
Q ss_conf 8999999987210247656599999999999982------999879999999988728898218889999984199999-
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEA------DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY- 1104 (1690)
Q Consensus 1032 elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEI------NPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY- 1104 (1690)
+++.+.|-.+-.+ ++++.|+..+.+|+++ .+..+..|...+.+|..++...++.+.+++|+++.+.+-
T Consensus 38 ~~y~~aa~~y~~~-----~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~ 112 (290)
T d1qqea_ 38 DLCVQAATIYRLR-----KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (290)
T ss_dssp HHHHHHHHHHHHT-----TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999988-----69999999999999999875998899999999999999808858889999976677653253
Q ss_pred -H--------HHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf -9--------9999985-27986521688999999999853038999400112137999999999966058999999999
Q 000307 1105 -A--------LWLMYIN-SRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1105 -~--------Lw~mYIN-sr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
. ++.+|.. .+ .|++|+..|.+...-...+ ........++..+.++|...|+|++|+..+.
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~--------~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~ 182 (290)
T d1qqea_ 113 FRRGANFKFELGEILENDLH--------DYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 20589999998886764787--------8999988999999998733--7603334688999999998173999999999
Q ss_pred HHCC
Q ss_conf 6305
Q 000307 1175 RLLI 1178 (1690)
Q Consensus 1175 rLEq 1178 (1690)
++..
T Consensus 183 ~~~~ 186 (290)
T d1qqea_ 183 KLIK 186 (290)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=8.2e-06 Score=54.36 Aligned_cols=92 Identities=11% Similarity=0.015 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 799999999887288982188899999841999999----9999985279865216889999999998530389994001
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1070 aelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~ 1145 (1690)
...+|..+..+++.+...++..+|++|++.+|.+.+ |+..|...+ .+++|+..|.+....+ |+.
T Consensus 16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~al~~~-p~~--- 83 (112)
T d1hxia_ 16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--------KDGLAIIALNHARMLD-PKD--- 83 (112)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--------HHHHHHCCCCCCCCCC-CCC---
T ss_conf 8999999999998760589999886101121111001233545641012--------5877410000011111-100---
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 12137999999999966058999999999630
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.++++.|..+|...|++++|+..+.|.+
T Consensus 84 ----~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 84 ----IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ----0003789999999789999999999981
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=3.6e-05 Score=49.94 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98799999999887288982188899999841999999----99999852798652168899999999985303899940
Q 000307 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM 1143 (1690)
Q Consensus 1068 tSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~ 1143 (1690)
.+++.+...+..|+..+.-.+|...|.+|++.+|.+.. ++..|+..+ .|++||..|....... |+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~--------~~~~Ai~~~~~al~l~-p~~- 71 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELD-GQS- 71 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTSC-TTC-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC-CCC-
T ss_conf 649999999999998699999999999999859998999981789874100--------0001247888888718-873-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 01121379999999999660589999999996305
Q 000307 1144 HASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1144 ~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+.++.+..+|...|++++|+..+.+...
T Consensus 72 ------~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 72 ------VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ------89999999999987999999999999987
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.09 E-value=2.3e-05 Score=51.21 Aligned_cols=94 Identities=6% Similarity=-0.006 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC----------CHHHHHHHHHHHCCCCCHH----HHHHHHHC
Q ss_conf 656599999999999982999879999999988728898----------2188899999841999999----99999852
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS----------VGKDDMFSYSVKHNEGSYA----LWLMYINS 1113 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~----------~ea~emlekAVelaP~NY~----Lw~mYINs 1113 (1690)
..+.++.|+..+.+++++||+++.+|+.++..|...+.. +++...|++|++++|.+.. ++..|..+
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 87369999999999986188310899999999987621333367788788899999998873012058776689999870
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79---865216889999999998530389994
Q 000307 1114 RT---PLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1114 r~---s~ddrl~aYdkAI~aLe~las~~~pDr 1142 (1690)
+. ........|.+|+..|....... |+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~-P~~ 119 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQ-PDN 119 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCH
T ss_conf 1011357889886787631211000259-888
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=2e-05 Score=51.75 Aligned_cols=119 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 2689999999872102-4-765659999999999998----------------299987999999998872889821888
Q 000307 1030 SNEQCVEMALLILNQD-A-NKLEGMKKALSLLSRALE----------------ADPTSEILWITYLLIFYSNTNSVGKDD 1091 (1690)
Q Consensus 1030 d~elWi~lAl~~Lnq~-~-n~~g~yDAALdLLsrALE----------------INPtSaelWyeyl~lY~~~~~~~ea~e 1091 (1690)
+.+.|++.|-.+-... . -..++|..|+..+.+||+ ++|..+.+|..++..|..++....+..
T Consensus 19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~ 98 (169)
T d1ihga1 19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 98 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 09999999999999999999908899999999999874111166665577877190239999989999986402101366
Q ss_pred HHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999841999999----99999852798652168899999999985303899940011213799999999996605
Q 000307 1092 MFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSG 1164 (1690)
Q Consensus 1092 mlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSG 1164 (1690)
.|.+|++++|.+.. ++..|.+.+ .|++|+..|....... |+. .++...|..++..-.
T Consensus 99 ~~~~al~~~p~~~~a~~~~g~~~~~l~--------~~~~A~~~~~~al~l~-p~n-------~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 99 SCLEALEIDPSNTKALYRRAQGWQGLK--------EYDQALADLKKAQEIA-PED-------KAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHH
T ss_conf 655443100022367776999999804--------7999999999999859-899-------999999999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=8.1e-05 Score=47.49 Aligned_cols=86 Identities=6% Similarity=-0.052 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHH
Q ss_conf 65659999999999998299987---------------99999999887288982188899999841999999----999
Q 000307 1048 KLEGMKKALSLLSRALEADPTSE---------------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1108 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSa---------------elWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~ 1108 (1690)
..++|+.|+..|.+||++.|... .+|.-++..|+.++...++..++++|++++|.|.. ++.
T Consensus 25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 104 (170)
T d1p5qa1 25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGE 104 (170)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 96999999999999988751010003577764064679999999999886421101100000001002231034677799
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9985279865216889999999998530389994
Q 000307 1109 MYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1109 mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr 1142 (1690)
.|...+ .|++|+..|......+ |+.
T Consensus 105 ~~~~~g--------~~~~A~~~~~~al~l~-P~n 129 (170)
T d1p5qa1 105 AHLAVN--------DFELARADFQKVLQLY-PNN 129 (170)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHC-SSC
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHC-CCC
T ss_conf 998722--------2999999999999729-898
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=4.9e-05 Score=49.01 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=50.9
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 999999887288982188899999841999999----9999985279865216889999999998530389994001121
Q 000307 1073 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1148 (1690)
Q Consensus 1073 Wyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ 1148 (1690)
+...+.-|++.+.-.++.+.|++|++++|.+.. ++..|+..+ .+++|+..|......+ |+.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~kal~~~-p~~------ 77 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELD-KKY------ 77 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHC-CCC------
T ss_conf 9999999999589999999866021100011333245678887405--------4212888899999875-446------
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 379999999999660589999999996305
Q 000307 1149 ILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1149 ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+++..+..+|...|+++.|+..+.+...
T Consensus 78 -~~a~~~~g~~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 78 -IKGYYRRAASNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -68779999999994999999998999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.2e-05 Score=51.39 Aligned_cols=83 Identities=8% Similarity=-0.051 Sum_probs=43.5
Q ss_pred HHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 21100126899999998721024765659999999999998299987999999998872889821888999998419999
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1024 Le~~~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~N 1103 (1690)
|+..|.+..+|..+|..++.. ++++.|+..+.++++++|..+.+|+.++.+|..++...++...|++|++++|.+
T Consensus 30 l~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~ 104 (117)
T d1elwa_ 30 IKLDPHNHVLYSNRSAAYAKK-----GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 104 (117)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHCCCCCHHHHHCCCCCCCCC-----CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 861996013430001101100-----001121001346777402202677889999998127999999999999849898
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000307 1104 YALWLMYI 1111 (1690)
Q Consensus 1104 Y~Lw~mYI 1111 (1690)
-.++..+-
T Consensus 105 ~~~~~~l~ 112 (117)
T d1elwa_ 105 PQLKEGLQ 112 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.5e-05 Score=52.53 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH-----------HHHHHHHCCCC
Q ss_conf 6565999999999999829998799999999887288982188899999841999999-----------99999852798
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----------LWLMYINSRTP 1116 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~-----------Lw~mYINsr~s 1116 (1690)
..++|+.|+..|.++|+++|+.+.+|+.++..|+.++.-.++.+.|++|++++|.+.. ++..|...+
T Consensus 16 ~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~-- 93 (128)
T d1elra_ 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE-- 93 (128)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf 859999999999999884964589998688999881860778999999998680127889889999999999999938--
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6521688999999999853038999
Q 000307 1117 LNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1117 ~ddrl~aYdkAI~aLe~las~~~pD 1141 (1690)
.|+.|+..|......+ ++
T Consensus 94 ------~~~~A~~~~~kal~~~-~~ 111 (128)
T d1elra_ 94 ------KYKDAIHFYNKSLAEH-RT 111 (128)
T ss_dssp ------CHHHHHHHHHHHHHHC-CC
T ss_pred ------CHHHHHHHHHHHHHCC-CC
T ss_conf ------8999999999998459-99
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.95 E-value=1.2e-05 Score=53.28 Aligned_cols=186 Identities=15% Similarity=0.099 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 76565999999999999829998799999999887288982188899999841999999999998527986521688999
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1126 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdk 1126 (1690)
-.-|+++.|+..|..+++.+|+++.++..++.+|...+.-+++...|++|++++|++-..+..|...-. .......
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~----a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK----AAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HCCCCHH
T ss_conf 888899999999999999789999999999999998799999999999999869973899999999998----3466378
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCH
Q ss_conf 99999985303899940011213799999999996605899999999963053369999531409999997521783205
Q 000307 1127 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1127 AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
++..+.......+++. ...++.+..++...|+++.|+..+.++++ +....+ ...-..--..+.-+|....
T Consensus 83 a~~~~~~~~~~~~p~~-------~~~~l~~a~~~~~~gd~~~A~~~~~~a~e--~~p~~~-~~~~~~~f~wi~D~D~Rlg 152 (264)
T d1zbpa1 83 FAQGAATAKVLGENEE-------LTKSLVSFNLSMVSQDYEQVSELALQIEE--LRQEKG-FLANDTSFSDVRDIDDRLG 152 (264)
T ss_dssp HTTSCCCEECCCSCHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCC-EEETTEEESCEEESSTTTT
T ss_pred HHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCC-CCCCCCCHHHHHCCCHHHH
T ss_conf 9987544420358647-------99999999999967998999999999983--399998-1001557788744330206
Q ss_pred HHHHHH--HHHHCCCCHHHHHHC--CCHHHHHCCCCCCCCCCHH
Q ss_conf 578788--876303508898411--4302322177998655303
Q 000307 1207 WVCCVY--LVIYRKLPDAVLQLL--ECEKELFAIDWPPVQLEDD 1246 (1690)
Q Consensus 1207 wLa~iY--li~YrvLPGdiy~qn--e~~KEAl~I~W~yvqvlkd 1246 (1690)
-+|.+. --.|.=+|=.=+-.. ..++.+.++.|....+.-.
T Consensus 153 ~~~E~~~~~G~Y~w~p~~~i~~~~~~~p~~l~d~~w~~~~~~~~ 196 (264)
T d1zbpa1 153 GYIELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEFDID 196 (264)
T ss_dssp TEEEEECTTSCEEEEEGGGEEEEEECCCCSSGGGTEEEEEEEET
T ss_pred HHHHHHHCCCCEEEECHHHHHHHHCCCCCCHHHHHHHHEEEEEC
T ss_conf 68876524782798618985334258999889874111378835
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=4.9e-05 Score=48.96 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHCCCCCH------HHHHHHHHCCCCC
Q ss_conf 76565999999999999829998799999999887288982---18889999984199999------9999998527986
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSV---GKDDMFSYSVKHNEGSY------ALWLMYINSRTPL 1117 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~---ea~emlekAVelaP~NY------~Lw~mYINsr~s~ 1117 (1690)
.+.+.++.|-..+.++|+++|.++++++.|+..++..+... ++..+|+++++.+|.+. .|+..|...+
T Consensus 10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g--- 86 (122)
T d1nzna_ 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--- 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---
T ss_conf 69999999999999988329998999999999999851267899999999999860699319999999999999973---
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5216889999999998530389994
Q 000307 1118 NHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1118 ddrl~aYdkAI~aLe~las~~~pDr 1142 (1690)
.|++|+..|.+..... |+.
T Consensus 87 -----~~~~A~~~~~~aL~~~-P~~ 105 (122)
T d1nzna_ 87 -----EYEKALKYVRGLLQTE-PQN 105 (122)
T ss_dssp -----CHHHHHHHHHHHHHHC-TTC
T ss_pred -----HHHHHHHHHHHHHHHC-CCC
T ss_conf -----1699999999999769-098
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=1.5e-05 Score=52.51 Aligned_cols=221 Identities=9% Similarity=-0.040 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH--HHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999999999998299987999999998872889821888999998419999999--999985279865216889999999
Q 000307 1053 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL--WLMYINSRTPLNHRLDAYDAALSV 1130 (1690)
Q Consensus 1053 DAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~L--w~mYINsr~s~ddrl~aYdkAI~a 1130 (1690)
..|...|.+|++++|+.+.+|+.++..|..+++-. +.+++|+..+|..... ....+-.. .|..+|+.
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~---eaye~~i~~dp~~a~~~~~e~~Lw~~--------~y~~~ie~ 71 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDLWNH--------AFKNQITT 71 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHH---HHHHHHHHHCHHHHHHHTHHHHHHHH--------HTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHH---HHHHHHHHCCHHHHHHHHHHHHHHHH--------HHHHHHHH
T ss_conf 89999999998719997999951999999976299---99999987493019998579999999--------99999999
Q ss_pred HHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 99853038-99940011213799999999996605899999999963053369999531409999997521783205578
Q 000307 1131 LCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1209 (1690)
Q Consensus 1131 Le~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa 1209 (1690)
+-...... .++. ..+.. .++..++..++.|+++|..+.+... ++-.+. ..
T Consensus 72 ~r~~~k~~~~~~~----~~~~~--~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~--------~~------------- 122 (497)
T d1ya0a1 72 LQGQAKNRANPNR----SEVQA--NLSLFLEAASGFYTQLLQELCTVFN--VDLPCR--------VK------------- 122 (497)
T ss_dssp HHHHHSCSSCTTT----THHHH--HHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHCCCCCCCCH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHH--------HH-------------
T ss_conf 9985616458437----99999--9999999999999999999999878--991139--------99-------------
Q ss_pred HHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 78887630350889841143023221779986553032666999999999998731289511333101532577789999
Q 000307 1210 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1289 (1690)
Q Consensus 1210 ~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~s~k~d~~tKLNlIR 1289 (1690)
...+|..+...+...+|..- +.+.+..+|..++ +.+| +-+.. .
T Consensus 123 -------~~~lg~~~~~~~~~~~A~~~---~~~al~~~~~~~~--~~LG-~l~~~-~----------------------- 165 (497)
T d1ya0a1 123 -------SSQLGIISNKQTHTSAIVKP---QSSSCSYICQHCL--VHLG-DIARY-R----------------------- 165 (497)
T ss_dssp ------------------------------CCHHHHHHHHHHH--HHHH-HHHHH-T-----------------------
T ss_pred -------HHHHHHHHHHCCCHHHHHHH---HHHHHCCCHHHHH--HHHH-HHHHH-C-----------------------
T ss_conf -------99857998758999999999---9988278899999--9999-99998-0-----------------------
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9997116699999999999949984116--9889998302479750999999998299998526799999999
Q 000307 1290 CMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 1360 (1690)
Q Consensus 1290 q~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq 1360 (1690)
++.+.++..+.+.++..|.+... .|-..|....+ ..+|+.-|..+|...|.... +|.-|..
T Consensus 166 -----~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~~~~~~----a~~nL~~ 228 (497)
T d1ya0a1 166 -----NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPA----ASTNLQK 228 (497)
T ss_dssp -----TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHH----HHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHH----HHHHHHH
T ss_conf -----247899999999998789965999999999998699-99999999999817999789----9999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.00011 Score=46.51 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=66.1
Q ss_pred HHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 21100126899999998721024765659999999999998299987999999998872889821888999998419999
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1024 Le~~~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~N 1103 (1690)
++..+....+|..+|..++.. ++|+.|+..+.+||+++|+.+.+|+.++..|..++...++.+.|++|++++|+|
T Consensus 70 ~~~~~~~~~~~~nla~~~~~~-----~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n 144 (169)
T d1ihga1 70 AKLQPVALSCVLNIGACKLKM-----SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHCHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 771902399999899999864-----021013666554431000223677769999998047999999999999859899
Q ss_pred HHHH
Q ss_conf 9999
Q 000307 1104 YALW 1107 (1690)
Q Consensus 1104 Y~Lw 1107 (1690)
-.+.
T Consensus 145 ~~~~ 148 (169)
T d1ihga1 145 KAIQ 148 (169)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=2.8e-05 Score=50.69 Aligned_cols=115 Identities=13% Similarity=-0.058 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH--HHHHHHHCCCCCCCCHHHHH
Q ss_conf 6565999999999999829998799999999887288982188899999841999999--99999852798652168899
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~--Lw~mYINsr~s~ddrl~aYd 1125 (1690)
+.+.|+.|+..|..++.++|..+.+|+.++..|...+....+...+.+|++.+|..-. |+.+|...+ .|+
T Consensus 98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~--------~~~ 169 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRN--------QTS 169 (497)
T ss_dssp HHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTT--------CHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CHH
T ss_conf 999999999999998789911399999857998758999999999998827889999999999999802--------478
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 99999998530389994001121379999999999660589999999996305
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1126 kAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+|+..|.+..... |+. -+++.+|..+|...|++..||.-+.|-..
T Consensus 170 ~A~~~y~~A~~l~-P~~-------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 170 QAESYYRHAAQLV-PSN-------GQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHC-TTB-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999878-996-------59999999999986999999999999981
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.79 E-value=0.00028 Score=43.72 Aligned_cols=103 Identities=12% Similarity=0.027 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC--C-------HH-HHHHHHHCCCC
Q ss_conf 76565999999999999829998799999999887288982188899999841999--9-------99-99999852798
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG--S-------YA-LWLMYINSRTP 1116 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~--N-------Y~-Lw~mYINsr~s 1116 (1690)
....+|+.|.+++.++ +.+|...+.-.++.++|++|++..+. + |. ++.+|...+
T Consensus 28 ~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~-- 91 (290)
T d1qqea_ 28 SDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-- 91 (290)
T ss_dssp CSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred CCCCCHHHHHHHHHHH--------------HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC--
T ss_conf 7643699999999999--------------999998869999999999999999875998899999999999999808--
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHH
Q ss_conf 6521688999999999853038999400112137999999999966-05899999999
Q 000307 1117 LNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM-SGNTEKAIQRI 1173 (1690)
Q Consensus 1117 ~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~q-SGnydKAI~tL 1173 (1690)
.+++|+..|.+..... +.. ........++..+..+|-. .|++++||..+
T Consensus 92 ------~~~~A~~~~~~a~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 141 (290)
T d1qqea_ 92 ------NSVNAVDSLENAIQIF-THR-GQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (290)
T ss_dssp ------CHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------8588899999766776-532-5320589999998886764787899998899
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.77 E-value=0.00037 Score=42.92 Aligned_cols=102 Identities=6% Similarity=-0.007 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHH
Q ss_conf 6565999999999999829998---------------799999999887288982188899999841999999----999
Q 000307 1048 KLEGMKKALSLLSRALEADPTS---------------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1108 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtS---------------aelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~ 1108 (1690)
..|+|..|+..+..||.+-+.. ..+|..++..|+.++...++.++|++|++++|.|.. ++.
T Consensus 27 ~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~ 106 (168)
T d1kt1a1 27 KGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGE 106 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 95999999999999999998750012455531064679999849999877622011000223222013104889998899
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 998527986521688999999999853038999400112137999999999966058
Q 000307 1109 MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGN 1165 (1690)
Q Consensus 1109 mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGn 1165 (1690)
.|...+ .|++|+..|.+....+ |+. .++...+..+....+.
T Consensus 107 ~~~~l~--------~~~~A~~~~~~al~l~-P~n-------~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 107 AQLLMN--------EFESAKGDFEKVLEVN-PQN-------KAARLQIFMCQKKAKE 147 (168)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHSC-TTC-------HHHHHHHHHHHHHHHH
T ss_pred HHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHHH
T ss_conf 998827--------8999999999999859-898-------9999999999999986
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.00026 Score=43.98 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 659999999999998299987999999998872889821888999998419999999
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~L 1106 (1690)
+.++.|+..+.+||+++|+++.+||..+..|..++...++...|++|++++|+|-.+
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 137 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 653011101000100000001246776899999689999999999999829898999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00024 Score=44.17 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 899999998721024765659999999999998299987999999998872889821888999998419999999
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1032 elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~L 1106 (1690)
.++.-+|..++.+ ++|+.|+..+.++|++||+++.+|+..+.+|..++.-.++...|++|++++|+|-.+
T Consensus 63 ~~~~nla~~y~k~-----~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~ 132 (170)
T d1p5qa1 63 ASHLNLAMCHLKL-----QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132 (170)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHH-----HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999999998864-----211011000000010022310346777999987222999999999999729898999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=0.00012 Score=46.29 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=78.7
Q ss_pred HHHHHCHHHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-----------
Q ss_conf 222110012689999999872102--4---765659999999999998299987999999998872889-----------
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQD--A---NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------- 1085 (1690)
Q Consensus 1022 n~Le~~~~d~elWi~lAl~~Lnq~--~---n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~----------- 1085 (1690)
.=++..|.+.+.|..++..++... . .+.+.++.|+..+.+||++||+.+.+|+.++..|..++.
T Consensus 22 ~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~ 101 (145)
T d1zu2a1 22 NTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHN 101 (145)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99861883108999999999876213333677887888999999988730120587766899998701011357889886
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 821888999998419999999999985279865216889999999998530
Q 000307 1086 SVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1086 ~~ea~emlekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdkAI~aLe~las 1136 (1690)
-..+.++|++|++++|.|-. +..+.+ .+.+|++.+.+..+
T Consensus 102 ~~~A~~~~~kal~l~P~~~~---~~~~L~--------~~~ka~~~~~e~~k 141 (145)
T d1zu2a1 102 FDLATQFFQQAVDEQPDNTH---YLKSLE--------MTAKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHH---HHHHHH--------HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHH---HHHHHH--------HHHHHHHHHHHHHH
T ss_conf 78763121100025988899---999999--------99997978999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.62 E-value=0.00024 Score=44.21 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHH
Q ss_conf 5659999999999998299987----------------99999999887288982188899999841999999----999
Q 000307 1049 LEGMKKALSLLSRALEADPTSE----------------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1108 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSa----------------elWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~ 1108 (1690)
.|+|..|+..+..||++-+... .+|+-++..|+.++...++.+.|.+|++++|.|.. ++.
T Consensus 30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~ 109 (153)
T d2fbna1 30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 109 (153)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 59999999999987760730011105778876310788999619999998465301110100010000000124677689
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 998527986521688999999999853038999400112137999999999
Q 000307 1109 MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1159 (1690)
Q Consensus 1109 mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL 1159 (1690)
.|...+ .|+.|+..|+.....+ |+. .++...+..+
T Consensus 110 ~~~~lg--------~~~~A~~~~~~al~l~-P~n-------~~~~~~l~~~ 144 (153)
T d2fbna1 110 ANMYFG--------FLEEAKENLYKAASLN-PNN-------LDIRNSYELC 144 (153)
T ss_dssp HHHHHT--------CHHHHHHHHHHHHHHS-TTC-------HHHHHHHHHH
T ss_pred HHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHH
T ss_conf 999968--------9999999999999829-898-------9999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.0012 Score=39.34 Aligned_cols=99 Identities=7% Similarity=0.038 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 799999999887288982188899999841999999----9999985279865216889999999998530389994001
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1070 aelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~ 1145 (1690)
+..+-..+..|+..++-.++..+|.+|++++|.+.. ++..|...+ .|++|+..+.+..... |.....
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l~-~~~~~~ 74 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCRELCEKAIEVG-RENRED 74 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHH-HHSTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCCHHH
T ss_conf 8999999999998599999999999998849645899986889998818--------6077899999999868-012788
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 12137999999999966058999999999630
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
-..+-.++..|.+.+...+++++||..+.+-.
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 98899999999999999388999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.22 E-value=0.0023 Score=37.46 Aligned_cols=72 Identities=18% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 89999999872102476565999999999999829998799999999887288982188899999841999999999
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL 1108 (1690)
Q Consensus 1032 elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~Lw~ 1108 (1690)
.+++-+|.-++. .++|+.|+..+.+||++||++..+|+..+..|..++.-.++...|++|++++|+|-.+..
T Consensus 65 ~~~~Nla~~~~~-----l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~ 136 (168)
T d1kt1a1 65 AAFLNLAMCYLK-----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 136 (168)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHH-----HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999849999877-----622011000223222013104889998899998827899999999999985989899999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00065 Score=41.24 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9899998842029699999999997110277
Q 000307 1429 YLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1429 iLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
.||.+|++ .|+.++|...|++||+..|++
T Consensus 77 ~Lg~~y~~--~g~~~~A~~~~~~aL~~~P~~ 105 (122)
T d1nzna_ 77 YLAVGNYR--LKEYEKALKYVRGLLQTEPQN 105 (122)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999--731699999999999769098
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.02 E-value=0.00083 Score=40.50 Aligned_cols=53 Identities=9% Similarity=-0.125 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 65659999999999998299987------------999999998872889821888999998419
Q 000307 1048 KLEGMKKALSLLSRALEADPTSE------------ILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSa------------elWyeyl~lY~~~~~~~ea~emlekAVela 1100 (1690)
..|+|+.|+..+.++|+++|..+ .+|..++..|..+++-.++...+.+|+++.
T Consensus 21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 85999999999999998684420102001210279999999999998286300157664355304
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0096 Score=33.17 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999659935899999999998845225522220100036788999999999753333532212256679899998
Q 000307 1356 NQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLH 1435 (1690)
Q Consensus 1356 nQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~Ly 1435 (1690)
+++...+.+.++++.++...++ |+...... ... .....+.| -.||.+++
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~--------------Al~~~~~~-----~~~-~~~~~~~l-----------~~Lg~~~~ 57 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQ--------------ALRQLDEG-----EIS-TIDKVSVL-----------DYLSYAVY 57 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHTT-----CCC-SSCHHHHH-----------HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH--------------HHHHHHHH-----HCC-CCCHHHHH-----------HHHHHHHH
T ss_conf 9999999997799999999999--------------99988653-----014-76478999-----------98726888
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 84202969999999999711027708999999898881
Q 000307 1436 RLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1436 q~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
+ .|+.++|...|++||+.+|.+ ..+++|.++|-.
T Consensus 58 ~--~g~~~~A~~~y~~aL~l~P~~--~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 58 Q--QGDLDKALLLTKKLLELDPEH--QRANGNLKYFEY 91 (95)
T ss_dssp H--TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred H--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 6--577398887887798869297--999999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.57 E-value=0.013 Score=32.29 Aligned_cols=103 Identities=15% Similarity=0.038 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC----HHHHHHHHHCCCCCCCCHH
Q ss_conf 765659999999999998299987999999998872889821888999998419999----9999999852798652168
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS----YALWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~N----Y~Lw~mYINsr~s~ddrl~ 1122 (1690)
...|+++.|...|.+||++.+...-.++.... -....+..+.+.. ..++..|+..+
T Consensus 22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~------------w~~~~r~~l~~~~~~a~~~la~~~~~~g-------- 81 (179)
T d2ff4a2 22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQ------------FVEPFATALVEDKVLAHTAKAEAEIACG-------- 81 (179)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST------------THHHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf 98879999999999998638613112576318------------9999999999999999999999998879--------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 8999999999853038999400112137999999999966058999999999630
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1123 aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.|+.|+..+.+..+.+ |.. .+....++.+|...|++..|+..+.++.
T Consensus 82 ~~~~Al~~~~~al~~~-P~~-------e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYR-------EPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9057899999999849-851-------9999999999998557999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.42 E-value=0.00086 Score=40.40 Aligned_cols=127 Identities=10% Similarity=-0.009 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 6699999999999949984116-988999830247975099999999829999852679999999999965993589999
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1374 (1690)
Q Consensus 1296 dse~ai~LfdklLe~~P~d~eL-~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L 1374 (1690)
+.+.++..+.+.++..|.++++ ..++..+...+--+.++..|+.++...|+..+ +|..|.......
T Consensus 11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~----~~~~l~~ll~a~--------- 77 (264)
T d1zbpa1 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----GASQLRHLVKAA--------- 77 (264)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHC---------
T ss_conf 9999999999999978999999999999999879999999999999986997389----999999999834---------
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99999988452255222201000367889999999997533335322122566798999988420296999999999971
Q 000307 1375 MDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALK 1454 (1690)
Q Consensus 1375 ~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk 1454 (1690)
.. ..++....+.......+ .+.. ...+....+.. .|+.++|...+++++.
T Consensus 78 --~~----------~~~a~~~~~~~~~~~~p-------~~~~---------~~l~~a~~~~~--~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 78 --QA----------RKDFAQGAATAKVLGEN-------EELT---------KSLVSFNLSMV--SQDYEQVSELALQIEE 127 (264)
T ss_dssp --HH----------HHHHTTSCCCEECCCSC-------HHHH---------HHHHHHHHHHH--HTCHHHHHHHHHHHHH
T ss_pred --CC----------CHHHHHHHHHHHCCCCC-------HHHH---------HHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_conf --66----------37899875444203586-------4799---------99999999996--7998999999999983
Q ss_pred HCCCCCHHHHHHH
Q ss_conf 1027708999999
Q 000307 1455 AAASEHFKHCVRE 1467 (1690)
Q Consensus 1455 ~np~N~~i~cLNN 1467 (1690)
..|.. -..|++
T Consensus 128 ~~p~~--~~~~~~ 138 (264)
T d1zbpa1 128 LRQEK--GFLAND 138 (264)
T ss_dssp HCCCC--CEEETT
T ss_pred CCCCC--CCCCCC
T ss_conf 39999--810015
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0093 Score=33.26 Aligned_cols=71 Identities=7% Similarity=-0.025 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2689999999872102476565999999999999829998-------799999999887288982188899999841999
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1030 d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS-------aelWyeyl~lY~~~~~~~ea~emlekAVelaP~ 1102 (1690)
..+-|.++....+.+ |+|+.|...|.+||++.|.. +.+++.++..|+++++..++.+.+++|++++|.
T Consensus 4 saddc~~lG~~~~~~-----g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 4 TAEDSFELGKVAYTE-----ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 699999999999997-----799999999999999886530147647899998726888657739888788779886929
Q ss_pred CHH
Q ss_conf 999
Q 000307 1103 SYA 1105 (1690)
Q Consensus 1103 NY~ 1105 (1690)
+..
T Consensus 79 ~~~ 81 (95)
T d1tjca_ 79 HQR 81 (95)
T ss_dssp CHH
T ss_pred CHH
T ss_conf 799
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.79 E-value=0.046 Score=28.45 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 6599999999999982999879999999988728898218889999984
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1098 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVe 1098 (1690)
|+++.|+..+.++|+++|.+..+|+.+...|+..+...++...|+++.+
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9905789999999984985199999999999985579999999999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.62 E-value=0.054 Score=28.00 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=52.3
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCH---------------H-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9988728898218889999984199999---------------9-99999852798652168899999999985303899
Q 000307 1077 LLIFYSNTNSVGKDDMFSYSVKHNEGSY---------------A-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1140 (1690)
Q Consensus 1077 l~lY~~~~~~~ea~emlekAVelaP~NY---------------~-Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~p 1140 (1690)
+..++..+.-.++..+|++|+++.|.+. . ++..|..++ .++.....|++||..+.+..... +
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg-~~~~A~~~~~~al~~~~~~~~~~-~ 93 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALHYFNRRGELN-Q 93 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHCCTT-S
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCCCCC-C
T ss_conf 999998599999999999999868442010200121027999999999999828-63001576643553043100245-5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 9400112137999999999966058999999999630
Q 000307 1141 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1141 Dr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
+ .......+++.+..+|...|+++.||..+.+-.
T Consensus 94 ~---~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 94 D---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp T---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4---431127877526999998888888899999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=95.40 E-value=0.064 Score=27.50 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHCCCCCHH-
Q ss_conf 6899999998721024765659999999999998299987999999998872----88982188899999841999999-
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYS----NTNSVGKDDMFSYSVKHNEGSYA- 1105 (1690)
Q Consensus 1031 ~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~----~~~~~ea~emlekAVelaP~NY~- 1105 (1690)
-+.|+.++..+.++ +++..|+..|.+|.+. ..+.+++.++.+|.. .+....+...+++|++.....-.
T Consensus 2 p~~~~~lG~~~~~~-----~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKE-----KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 89999999999987-----7999999999999978--9999999999999809996056999987501222111111231
Q ss_pred -HHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -999998527986521688999999999853
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1135 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdkAI~aLe~la 1135 (1690)
|+.++..-. .-...++.|+..|....
T Consensus 75 ~l~~~~~~~~----~~~~~~~~a~~~~~~a~ 101 (265)
T d1ouva_ 75 LLGNLYYSGQ----GVSQNTNKALQYYSKAC 101 (265)
T ss_dssp HHHHHHHHTS----SSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCC----CCCHHHHHHHHHHHHHH
T ss_conf 3501224321----12123677988876554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.58 E-value=0.16 Score=24.69 Aligned_cols=76 Identities=5% Similarity=0.040 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 126899999998721024765659999999999998299987-999999998872889821888999998419999999
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE-ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1029 ~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSa-elWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~L 1106 (1690)
...|-...+|+-++.- ...++.+.|+.+|..++..+|... ..||.++..|+++++-+.|..+|+++.+.+|+|-..
T Consensus 33 ~s~qt~F~YAw~Lv~S--~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKS--TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 8810199999999827--9688999999999999854950599999999999998732999999999998239984999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=93.58 E-value=0.16 Score=24.69 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 8799999999887288982188899999841999999----999998527986521688999999999853038999400
Q 000307 1069 SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1144 (1690)
Q Consensus 1069 SaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~ 1144 (1690)
+|++|+.++.+++..+...++...|++|++.. +.. |+.+|..-. +..-++..|+..|+..+... -
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~----~~~~d~~~a~~~~~~a~~~~---~-- 69 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQ----GVEKNLKKAASFYAKACDLN---Y-- 69 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS----SSCCCHHHHHHHHHHHHHTT---C--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCC----CCCHHHHHHHHHHCCCCCCC---C--
T ss_conf 98999999999998779999999999999789--9999999999998099----96056999987501222111---1--
Q ss_pred HHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHC
Q ss_conf 11213799999999996----6058999999999630
Q 000307 1145 ASACILDLFLQMLQCFC----MSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1145 ~Sa~ILDvLL~LvqLY~----qSGnydKAI~tL~rLE 1177 (1690)
......|..++. ...++.+|+..+.+-.
T Consensus 70 -----~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~ 101 (265)
T d1ouva_ 70 -----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 101 (265)
T ss_dssp -----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred -----CCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -----11231350122432112123677988876554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=84.76 E-value=0.79 Score=19.93 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC--HHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 659999999999998299987999999998872889821888999998419999--999999985279865216889999
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS--YALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~N--Y~Lw~mYINsr~s~ddrl~aYdkA 1127 (1690)
.+++.|+.+|.++.+.+ .+.+++.++.. ...+..++..++++|++..... |.|+.+|.+-... ..++.+|
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~----~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVSN--SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYV----KKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS----CCCHHHH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC----CHHHHHH
T ss_conf 69999999999999879--91545654101--1238999999876541133125555678753301353----1035788
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH----HCCHHHHHH
Q ss_conf 99999853038999400112137999999999966----058999999
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCM----SGNTEKAIQ 1171 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~q----SGnydKAI~ 1171 (1690)
+..|.+.+.. .. .+..+.|..+|.. ..|+.+|+.
T Consensus 79 ~~~~~~aa~~---g~-------~~a~~~Lg~~y~~G~gv~~d~~~A~~ 116 (133)
T d1klxa_ 79 AQYYSKACGL---ND-------QDGCLILGYKQYAGKGVVKNEKQAVK 116 (133)
T ss_dssp HHHHHHHHHT---TC-------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CC-------CHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 8887500025---74-------06778999999829846778999999
|