Citrus Sinensis ID: 000310
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1680 | 2.2.26 [Sep-21-2011] | |||||||
| Q5F3U9 | 1412 | Sister chromatid cohesion | yes | no | 0.602 | 0.716 | 0.249 | 2e-72 | |
| Q9NTI5 | 1447 | Sister chromatid cohesion | yes | no | 0.602 | 0.700 | 0.248 | 3e-72 | |
| Q4VA53 | 1446 | Sister chromatid cohesion | yes | no | 0.602 | 0.700 | 0.246 | 8e-72 | |
| Q6TRW4 | 1447 | Sister chromatid cohesion | yes | no | 0.602 | 0.700 | 0.246 | 2e-71 | |
| Q5U241 | 1464 | Sister chromatid cohesion | N/A | no | 0.603 | 0.692 | 0.242 | 2e-71 | |
| Q498H0 | 1448 | Sister chromatid cohesion | N/A | no | 0.604 | 0.700 | 0.243 | 2e-70 | |
| Q29RF7 | 1337 | Sister chromatid cohesion | no | no | 0.605 | 0.760 | 0.245 | 2e-66 | |
| A4L9P7 | 1333 | Sister chromatid cohesion | no | no | 0.605 | 0.762 | 0.244 | 2e-66 | |
| A1L1F4 | 1320 | Sister chromatid cohesion | no | no | 0.594 | 0.756 | 0.244 | 7e-66 | |
| Q5F3V3 | 1330 | Sister chromatid cohesion | no | no | 0.606 | 0.766 | 0.245 | 2e-65 |
| >sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3 | Back alignment and function desciption |
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Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 272/1091 (24%), Positives = 493/1091 (45%), Gaps = 79/1091 (7%)
Query: 9 LKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNA---IVQPVLL 65
+KE+ K+ +K+ +V+ LK +++Q E + +LN + L
Sbjct: 19 VKEISDKI-----SKEEMVRRLKMVVKTFMDMDQDSE----EEKELYLNLALHLASDFFL 69
Query: 66 KHQDKDVKLLVATCICEITRITAPEAPY-SDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV 124
KH DKDV+LLVA C+ +I RI APEAPY S D LKDIF I GL+DT P F R
Sbjct: 70 KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 129
Query: 125 VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE 183
+LE +A +S + +LE +E+ ++Y T F+V ++ H + V M +M ++ E +
Sbjct: 130 YLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGD 189
Query: 184 DIQEDLLVILLSAL---GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS-MSGDSRPG 239
+ ++LL +L L +N N A LA ++++ A +E I F M G +
Sbjct: 190 TVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSIS 249
Query: 240 HSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299
++I ++Y +L V+P L +L ++ + RL+ V L+ +F S
Sbjct: 250 DLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELAS 309
Query: 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-DAPQILTALCDRLLDFDENV 358
Q ++ +L R D V +R+ ++ CL+ P A D + L R D +E +
Sbjct: 310 QNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAKDLTEYLKV---RSHDPEEAI 366
Query: 359 RKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNG 418
R V+ I A L + + V ER DK V++ M LA I++ L++ G
Sbjct: 367 RHDVIVSIVTAAKKDLLLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYSLQSEAG 426
Query: 419 SINQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
+ WI K+L Y +E + + P +R++ +++ D
Sbjct: 427 KEAAKQISWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETNERMKCLYYLYATLDS 486
Query: 478 IEMKALEKILEQKQRLQQEMQRYLSL-RQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKA 536
+KAL ++ + + L+ +++ + L +Q D + I K++ V++R+ +P KA
Sbjct: 487 NAVKALNEMWKCQNLLRHQVKDLVDLIKQPKTDASSKAIFSKVM----VITRNLPDPGKA 542
Query: 537 EENFLILDQL--KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-AKHRLYDFLSTLS 593
++ Q+ D + L L+ S QA ++ K LG K FL +
Sbjct: 543 QDFMKKFTQVLEDDEKIRSQLEMLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIK 602
Query: 594 M---KCSYLLFNKEHVKEILLEVAAQ---------KSSANAQFMQSCMDILGILARFSPL 641
+ + + + E + ++ +V + Q +++ +++L +L+ P+
Sbjct: 603 FLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPI 662
Query: 642 LLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 699
E E L+ LK ++E + E L + G I E S++ +L +G
Sbjct: 663 SFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKAKKGP 722
Query: 700 RRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVF 757
RQAKYA+H + AI + + +++ L L+ HL L ++G IA A F
Sbjct: 723 PRQAKYAIHCINAIFSSKETQ-FAQIFEPLHKSLDPSNFEHLITPLVTIGHIAMLAPDQF 781
Query: 758 ETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLLKIYGIKTLVKSYLPVKD 813
+S + FI +L T W ++ S L+KI IK +V+ L +K+
Sbjct: 782 AAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETLVKIQAIKMMVRWLLGMKN 841
Query: 814 AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ--WDHKIPV 871
H + G L + + S G+++E + S D + LRLA+ A+++L+++ + I +
Sbjct: 842 NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITL 901
Query: 872 DVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA--CAFLFGITESKSPEFEEE- 928
+ + L Q +++F K+H+ + L +Y CA +K P E
Sbjct: 902 EQYQLCALAINDECYQVRQIFAQKLHKGLSRLRLPLEYMAICALC-----AKDPVKERRA 956
Query: 929 --KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVK 986
+Q L I + + + +V S PEY++PY +H AH PD + +D++
Sbjct: 957 HARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYTIHLLAHD--PDYVKVQDIE 1012
Query: 987 AFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIV---DAAKSKN 1043
+ + L+FI+ +L+ K+E+ S + I + +IK ++D DA ++
Sbjct: 1013 QLKDIKECLWFILEILMAKNEN--------NSHAFIRKMVENIKQTKDAQGPDDAKMNEK 1064
Query: 1044 SHAICDLGLSI 1054
+ +CD+ ++I
Sbjct: 1065 LYTVCDVAMNI 1075
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Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis. Gallus gallus (taxid: 9031) |
| >sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 | Back alignment and function description |
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| >sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1680 | ||||||
| 147777785 | 1922 | hypothetical protein VITISV_030148 [Viti | 0.973 | 0.850 | 0.665 | 0.0 | |
| 255585406 | 1735 | androgen induced inhibitor of proliferat | 0.963 | 0.933 | 0.648 | 0.0 | |
| 224139450 | 1417 | predicted protein [Populus trichocarpa] | 0.838 | 0.993 | 0.720 | 0.0 | |
| 356522079 | 1641 | PREDICTED: sister chromatid cohesion pro | 0.958 | 0.981 | 0.640 | 0.0 | |
| 356564452 | 1642 | PREDICTED: sister chromatid cohesion pro | 0.959 | 0.981 | 0.634 | 0.0 | |
| 449443672 | 1692 | PREDICTED: sister chromatid cohesion pro | 0.895 | 0.889 | 0.656 | 0.0 | |
| 224089565 | 1411 | predicted protein [Populus trichocarpa] | 0.788 | 0.939 | 0.698 | 0.0 | |
| 356557993 | 1656 | PREDICTED: sister chromatid cohesion pro | 0.962 | 0.976 | 0.610 | 0.0 | |
| 356532370 | 1648 | PREDICTED: sister chromatid cohesion pro | 0.960 | 0.978 | 0.607 | 0.0 | |
| 297794445 | 1608 | binding protein [Arabidopsis lyrata subs | 0.927 | 0.968 | 0.602 | 0.0 |
| >gi|147777785|emb|CAN75734.1| hypothetical protein VITISV_030148 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 2196 bits (5690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1132/1701 (66%), Positives = 1352/1701 (79%), Gaps = 66/1701 (3%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K +QQL++VGSKLE PP+TKD LVKLLKQAATCL+EL+QSP ASILE++QP LNAIV
Sbjct: 56 MDQKRQQQLRDVGSKLENPPATKDALVKLLKQAATCLTELDQSPSASILESLQPSLNAIV 115
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
+P LLKHQD+DVKLLVATCICEITRITAPEAPYSDDVLKDIF+LIV TFSGL DT GP+F
Sbjct: 116 KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFRLIVSTFSGLSDTNGPAF 175
Query: 121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
GRRVVILETLA+YRSCVVMLDLECD+LVNEM+ TFF+VA DDHPESVL+SMQTIM+VLLE
Sbjct: 176 GRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFFSVARDDHPESVLTSMQTIMVVLLE 235
Query: 181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
ESED++EDLL +LS LGRNK+D ARRLAMNVIE CA KLE GIKQFLVSS+SGD+R
Sbjct: 236 ESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVIEHCAAKLEPGIKQFLVSSISGDNR 295
Query: 238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
+S IDYHEVIYD+YRC+PQILSGV PYLTGELLTD LDTRLKAV LVGDLFA+PG A
Sbjct: 296 SMNSEIDYHEVIYDIYRCAPQILSGVTPYLTGELLTDNLDTRLKAVKLVGDLFALPGLAI 355
Query: 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
+E F +FSEFLKRL DR+V VRMSVLEHVKSCLL++PSRA+APQI++ALCDRLLD+DEN
Sbjct: 356 SEAFQPIFSEFLKRLADRVVGVRMSVLEHVKSCLLSNPSRAEAPQIISALCDRLLDYDEN 415
Query: 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
VRKQVVAVICDVACH+L+SIPVET KLVAERLRDKSVLVK+YT+ERLA+I+ CLR +
Sbjct: 416 VRKQVVAVICDVACHSLSSIPVETXKLVAERLRDKSVLVKKYTLERLAEIYNLYCLRCCD 475
Query: 418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
GS+N +EF+WIPGKILRC YDKDF SDTIESVLC +LFPT FS+KD+V+HWVR+FSGFD+
Sbjct: 476 GSLNPSEFDWIPGKILRCFYDKDFRSDTIESVLCETLFPTEFSIKDKVKHWVRVFSGFDK 535
Query: 478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+E+KALEKILEQKQRLQQEMQRYLSL+QMHQDG+ PEIQKK+ +C R+MSR FA+PAKAE
Sbjct: 536 VEVKALEKILEQKQRLQQEMQRYLSLKQMHQDGEGPEIQKKVTYCLRIMSRLFADPAKAE 595
Query: 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
ENF ILDQLKD N+WKIL +L+D TSF QA + RDDLL+ILG KHRLYDFL TLS+KCS
Sbjct: 596 ENFQILDQLKDVNIWKILSSLIDPKTSFHQACSSRDDLLRILGEKHRLYDFLGTLSLKCS 655
Query: 598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE 657
YLLFNKEHVKE LLE A QKSS N Q++QSCM++L +LARFSPLLL G EE+LV+LLK++
Sbjct: 656 YLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAEEDLVHLLKDD 715
Query: 658 NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
NEIIKEG+LH+LAKAGGTIREQLA TSSSVDL+LERLCLEGSRRQAKYAVHALAAITKDD
Sbjct: 716 NEIIKEGVLHILAKAGGTIREQLAVTSSSVDLILERLCLEGSRRQAKYAVHALAAITKDD 775
Query: 718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 777
GLKSLSVLYKRLVDML++KTHLPAVLQSLGCIAQTAMPVFETRESEIE FIK +IL+CS+
Sbjct: 776 GLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQTAMPVFETRESEIEGFIKCEILKCSS 835
Query: 778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
I+GIKT+VKSYLPVKDAH+R GIDDLL ILK++L +GE+S
Sbjct: 836 --------------------IFGIKTMVKSYLPVKDAHLRLGIDDLLEILKNILLFGEIS 875
Query: 838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
+DIESS+VDKAHLRLA+AKA+LRL+R WDHKIPV VFHLTLRT E SFPQAKKLFLSKVH
Sbjct: 876 KDIESSAVDKAHLRLAAAKAILRLARHWDHKIPVGVFHLTLRTSESSFPQAKKLFLSKVH 935
Query: 898 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
QY+KDRLLDAKYACAF F I S+ EFEE+K NL DIIQM+HQ KARQ+S QSDA+S A
Sbjct: 936 QYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHNLGDIIQMYHQAKARQLSTQSDASSLA 995
Query: 958 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEAS--- 1014
YPE+I+PYLVH AHHSCPDIDECKDVKAFE +Y +L+ +SML+H DED K+EA
Sbjct: 996 -YPEFILPYLVHALAHHSCPDIDECKDVKAFEPIYWKLHIFLSMLVHGDEDTKAEAGADK 1054
Query: 1015 NKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSL 1074
KE IS IISIF+SIK SEDIVDAAKSKNSHA+CDLGLSI KRL + +D+ QG+ SS++L
Sbjct: 1055 EKEGISAIISIFQSIKLSEDIVDAAKSKNSHALCDLGLSIIKRLVQKQDDVQGLTSSITL 1114
Query: 1075 PSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEK 1134
P LYK EKKEGDDS+ASE QTWLADE VLTHFESLKLET+ +V E ++B ++
Sbjct: 1115 PPILYKLCEKKEGDDSVASEGQTWLADEXVLTHFESLKLETNGMVDEE----GVINBNDR 1170
Query: 1135 DGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNK 1194
DGNE+PLGKMI++LKS+G K K K KKSSPA+ K ENDVDIL+MVREIN D +G+ +K
Sbjct: 1171 DGNELPLGKMIKRLKSRGTKSRKVKNKKSSPAKKKHAENDVDILKMVREINFDAMGMSSK 1230
Query: 1195 FESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAP 1254
FESSNGH++ ++ K+ ++E+ K+R++T+VT VPKRRRS SA P+S SK
Sbjct: 1231 FESSNGHEYSSHRKSKMGQKHEKKKRRRSTEVTPVTVPKRRRSSSAKSSL--PRSASKGS 1288
Query: 1255 LRASGGGSHHAGVSSFQSIDMDDDI-SESEVKISTKKKKFTSNESDSFASRFQGSRSFSS 1313
+RA H AGVSSFQS DMD ++ ++SE K+S K ESD S F+ + +F S
Sbjct: 1289 VRALRDNLHQAGVSSFQSTDMDSEVHTDSEDKVSALKNIGEPAESDLLVSCFRRNSNFLS 1348
Query: 1314 KRKGKSADLGHDNEADEVGEADEGDLKNSDMLS-----------KSPVGSAKKRKRRSIA 1362
KRKGK +D G ++EA VGE + DL+ ++ KSP GS KKRKRRSIA
Sbjct: 1349 KRKGKGSDKGDNDEARIVGEDXDHDLRKPNVPMETDKIHTASNVKSPTGSTKKRKRRSIA 1408
Query: 1363 GLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1422
GLAK T+K + DLI RIKVWWPMDKQFYEG +KSYDP +KHV+LYDD DVEVLR
Sbjct: 1409 GLAKSTSKEGRSHAADLIDCRIKVWWPMDKQFYEGXVKSYDPKARKHVVLYDDGDVEVLR 1468
Query: 1423 LDKERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKSMKD-----KG 1477
L +ERWEL++N KP K K NS K VS+ +KNK G++QNKK +K +G
Sbjct: 1469 LARERWELVENVAKPAK--KLNSSKTPPSKGVSADQKNKFLNGSQQNKKPIKSSSSKVRG 1526
Query: 1478 KRTPKKSLKDRPKFA----SKSYFSEDEDSEKTDVSDPKPTTVSKVLETNSGDSQGKRAD 1533
KRTP+K+LK K + + F E E +DVS+P+P +SKV + NSGDS+ K +
Sbjct: 1527 KRTPRKNLKHVEKAGLESNTATEFCEVESRGSSDVSNPEPNAMSKVEDMNSGDSEEKLNE 1586
Query: 1534 MEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKPAEEVGSVPQD 1593
++ LT EESDKE K +SE + VED E + +ES++ +K SE +P E+ + QD
Sbjct: 1587 RSEKGLTGGEESDKEEKSVSEGKQVEDKEKRPSDTEESEKEEKPYSEGRPVEDKEGICQD 1646
Query: 1594 EK---------SDEEDKEEAESSKGSREEANEDGKSDSEGNEEINGDGSSPMNPEKSQNE 1644
+ S+E + EE++ S EEAN++ +SDSE + N + S+P + +KS +
Sbjct: 1647 AQESPEKKESYSEEREPEESKRDSPSGEEANKEEQSDSEETQAENLE-SNPTDXDKSSKK 1705
Query: 1645 LPKPVDADDAEISDDEPLVLM 1665
P + +DA+ SDDEPL L+
Sbjct: 1706 TSDPSNTEDAKNSDDEPLKLI 1726
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585406|ref|XP_002533398.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223526757|gb|EEF28984.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224139450|ref|XP_002323118.1| predicted protein [Populus trichocarpa] gi|222867748|gb|EEF04879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356522079|ref|XP_003529677.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356564452|ref|XP_003550468.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443672|ref|XP_004139601.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224089565|ref|XP_002308759.1| predicted protein [Populus trichocarpa] gi|222854735|gb|EEE92282.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356557993|ref|XP_003547294.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532370|ref|XP_003534746.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297794445|ref|XP_002865107.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297310942|gb|EFH41366.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1680 | ||||||
| TAIR|locus:2169058 | 1607 | AT5G47690 [Arabidopsis thalian | 0.747 | 0.781 | 0.639 | 0.0 | |
| TAIR|locus:2116787 | 873 | AT4G31880 [Arabidopsis thalian | 0.136 | 0.262 | 0.463 | 1.3e-66 | |
| RGD|1307094 | 1333 | Pds5a "PDS5, regulator of cohe | 0.437 | 0.551 | 0.249 | 2.5e-66 | |
| UNIPROTKB|F1N7G8 | 1449 | PDS5B "Uncharacterized protein | 0.329 | 0.382 | 0.268 | 3.2e-66 | |
| UNIPROTKB|Q5F3U9 | 1412 | PDS5B "Sister chromatid cohesi | 0.329 | 0.392 | 0.270 | 9e-66 | |
| UNIPROTKB|F1P3B8 | 1446 | PDS5B "Sister chromatid cohesi | 0.329 | 0.383 | 0.270 | 1.4e-65 | |
| UNIPROTKB|Q29RF7 | 1337 | PDS5A "Sister chromatid cohesi | 0.437 | 0.549 | 0.249 | 2.8e-65 | |
| ZFIN|ZDB-GENE-091217-2 | 1415 | pds5b "PDS5, regulator of cohe | 0.331 | 0.393 | 0.267 | 3.1e-65 | |
| MGI|MGI:2140945 | 1446 | Pds5b "PDS5, regulator of cohe | 0.329 | 0.383 | 0.267 | 7.2e-65 | |
| UNIPROTKB|Q5U241 | 1464 | pds5b-b "Sister chromatid cohe | 0.329 | 0.378 | 0.263 | 1.1e-64 |
| TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4159 (1469.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 808/1264 (63%), Positives = 988/1264 (78%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K E+QLKE+GSKL+ P +KD L+KLLK+AA CLSEL QSPP ++L+++QPFL+A++
Sbjct: 1 MAQKPEEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVI 60
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
+P +L HQDKDVKLLVA+C+ EITRITAPEAPYSD+++KDIFQLIV F+GL D GPSF
Sbjct: 61 KPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSF 120
Query: 121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
GRRV+ILET+AKYRSCVVMLDLECD+LV E+++TF VA DDHPE V SSMQ IMIVLLE
Sbjct: 121 GRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLE 180
Query: 181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
ESED+QE LL+ILLS LGRN++D ARRLAM VIE CA K+E+ IKQFL+SSMSGDSR
Sbjct: 181 ESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDSR 240
Query: 238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
S IDYHEVIYD+YRC+PQ LSGV PYLTGELL D+L+TRLK VGLVG+LF++PG
Sbjct: 241 FSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGLVGELFSLPGRVI 300
Query: 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
+E+F S+F EFLKRLTDR+V VRM++L+H+K CLL+DP RA+A QI++ALCDRLLD+DEN
Sbjct: 301 SEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIISALCDRLLDYDEN 360
Query: 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
+RKQVVAVICDV+ AL SIPV+T+KLVAERLRDK++LVK YTMERL ++FR CLR +
Sbjct: 361 IRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLTELFRVYCLRCAD 420
Query: 418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
G ++ +F WIPGKILRCLYDKDF SDTIE +LC SLFP+ FSV+D+V+HW++IFSGFD+
Sbjct: 421 GKVDTGDFNWIPGKILRCLYDKDFRSDTIEYILCSSLFPSDFSVRDKVKHWIQIFSGFDK 480
Query: 478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+E KA EKILEQ+QR+QQEMQRYLS++Q Q DAPEIQKKILF FRVMSR+F++P K E
Sbjct: 481 VETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILFGFRVMSRAFSDPPKTE 540
Query: 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
+NFLILDQLKDAN+WKIL NLLD NTS QA RDD+LKIL KH LYDFLSTLS+KCS
Sbjct: 541 QNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSEKHSLYDFLSTLSIKCS 600
Query: 598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTXXXXXXXXXXX 657
YLLF+KE+VKEIL EV+ +KSS N +Q CMD LG+LA F P L G
Sbjct: 601 YLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPSLFDGAEEELISFLKDD 660
Query: 658 XXIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
++KEG L +LAKAGGTIRE L +SSVDLLLER+C+EG+R+QAKYAVHALA+ITKDD
Sbjct: 661 DEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRKQAKYAVHALASITKDD 720
Query: 718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRXXXXXXXXXXXXLRCSN 777
GLKSLSVLYKRLVDMLE+K + PAVLQ LGCIAQ AMPV+ETR L+ +
Sbjct: 721 GLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILKLKS 780
Query: 778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
+ +D K WDD+SE+C LKIYGIKTLVKSYLP KDA +R G+DDLLGILK++LS+GE+S
Sbjct: 781 ETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVS 840
Query: 838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
ED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP+++FHLTL+TPEI FP AKK+FL KVH
Sbjct: 841 EDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIPIEIFHLTLKTPEIPFPTAKKIFLGKVH 900
Query: 898 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
QYVKDR+L+ KYAC+FLF IT S E EE+K NLADIIQ +Q K R+IS Q+DANS
Sbjct: 901 QYVKDRVLEMKYACSFLFDITGSNVLESEEDKHNLADIIQHSYQTKVRKISAQTDANSVT 960
Query: 958 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKE 1017
YP +I+PYLVH AHHSCPD+++CKDVK +E++Y +LY I+SML+HK+ED K+E +KE
Sbjct: 961 LYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISMLLHKEEDGKTEDIDKE 1020
Query: 1018 XXX--XXXXXXXXXKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLP 1075
K SED+ DA KSKNSHAIC+LGLSI L++ E + QG + VSLP
Sbjct: 1021 REYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDLQGEITPVSLP 1080
Query: 1076 STLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHE--VVGSEIARHEALDDLE 1133
TLYKP EK EGD S E + WLADE+VL HF +LKLE+H V + + +E + D E
Sbjct: 1081 PTLYKPSEKVEGDKSQVGEEKLWLADETVLLHFRALKLESHADASVIPQTSENEVMIDGE 1140
Query: 1134 KDGNEVPLGKMIXXXXXXXXXXXXXXXXXXXXXEVKGTENDVDILQMVREINLDNLGVLN 1193
DGNE+PLGK++ E + +NDVD+L+MVREINLD+L +L+
Sbjct: 1141 SDGNEIPLGKIVERLRAQGTKTRKGKKNKSVPAEDENGKNDVDVLKMVREINLDHLQMLD 1200
Query: 1194 KFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSF-PVPKRRRSLSAHGGFRTPKSNSK 1252
KFESSNGHKH PS++ ++ +++ KR D TS VPKRRRS S H ++ S K
Sbjct: 1201 KFESSNGHKHSPSERAEICQRDQKGNKRNVGDATSVVSVPKRRRSSSGHSPYKFSNSGPK 1260
Query: 1253 APLR 1256
L+
Sbjct: 1261 VQLK 1264
|
|
| TAIR|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-091217-2 pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2140945 Pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5U241 pds5b-b "Sister chromatid cohesion protein PDS5 homolog B-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | gw1.XVI.584.1 | hypothetical protein (1417 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1680 | |||
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 2e-06 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 5e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 2e-05 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 3e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 9e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 1e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 2e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 2e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-04 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 5e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 6e-04 | |
| TIGR01651 | 600 | TIGR01651, CobT, cobaltochelatase, CobT subunit | 6e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 7e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 8e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 0.001 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.003 | |
| PLN02967 | 581 | PLN02967, PLN02967, kinase | 0.003 | |
| COG5406 | 1001 | COG5406, COG5406, Nucleosome binding factor SPN, S | 0.004 |
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-06
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 18/151 (11%)
Query: 1511 PKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDE 1570
P P T SG A+ E+ +E + +E +
Sbjct: 46 PAPPA-----PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSG----SG 96
Query: 1571 SDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEING 1630
S+ V + E + ++ E+ +S E
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE--- 153
Query: 1631 DGSSPMNPEKSQNELPKPVDADDAEISDDEP 1661
+ S N+ P E S +EP
Sbjct: 154 ------SHNPSPNQQPSSFLQPSHEDSPEEP 178
|
Length = 413 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|215521 PLN02967, PLN02967, kinase | Back alignment and domain information |
|---|
| >gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1680 | |||
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 100.0 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 99.74 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 98.97 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.61 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.56 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.3 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.15 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.13 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.98 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.78 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.53 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.5 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.37 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.32 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.32 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.23 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.09 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 97.03 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.87 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 96.78 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.75 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 96.74 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.68 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 96.6 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.57 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.46 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.25 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.25 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.2 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.17 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 95.98 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.91 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.83 | |
| KOG4675 | 273 | consensus Uncharacterized conserved protein, conta | 95.8 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.76 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 95.66 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.5 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.31 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 95.26 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 94.79 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.69 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 94.61 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.58 | |
| PF09038 | 122 | 53-BP1_Tudor: Tumour suppressor p53-binding protei | 94.41 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.38 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 94.28 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.11 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 93.92 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 93.6 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.51 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.23 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 93.17 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 92.87 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 92.52 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 92.34 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.45 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 91.43 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 91.38 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.26 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 90.91 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 90.67 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 90.56 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 90.51 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 89.87 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 89.76 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 89.66 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.54 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.43 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 89.12 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 88.84 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 88.63 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 88.53 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 87.94 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 87.28 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 86.98 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 86.89 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 86.78 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 86.0 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 85.07 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 84.33 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 83.78 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 83.77 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 83.49 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 82.2 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 82.06 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 81.85 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 81.31 |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-136 Score=1322.04 Aligned_cols=1067 Identities=30% Similarity=0.465 Sum_probs=900.0
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHhhhcCC
Q 000310 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1680)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~AP 89 (1680)
..-|-+....+++++||++||++|++||++++|++ .+++++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34456666678999999999999999999999996 6999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000310 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1680)
Q Consensus 90 dAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~ 169 (1680)
||||++.||+|||++|++||.||.|+.+|||.||+||||+||.||.|++|.|.+|++++.+||++||++++.+|+.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555554599999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCchhH
Q 000310 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1680)
Q Consensus 170 ~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k~---~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d~-~~~~~~~~~ 245 (1680)
|.+||+.+|.|.+.||.++|++||.+|+.++. ..|++||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000310 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1680)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1680)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000310 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1680)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1680)
++++||.+||+...+..+..+++.|+.|++++||..+|.++|+++.+.+..++. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-hhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000310 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1680)
Q Consensus 406 ~LY~~-~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 483 (1680)
++|+. ||..+++|...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 666667777888999999999999999998764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000310 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1680)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~kl--nD~Ri~kLLk~~idp 561 (1680)
..|+++|.++|.+|+.||.++...+.++ .++++...|..++..||||.......++|++. .+..+...+..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765433 77788888999999999999999999999653 467888899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000310 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 627 (1680)
Q Consensus 562 ~td~~tv~~a~kELlkkL~~----k~~~~d~l~~Ll~R~S~lifNk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 627 (1680)
..+|.++.-.+++++.+++. +..+..+.+.|+.|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 88888776556666666654 3457788899999999987777 777777764332111 111 122345
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000310 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1680)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKy 705 (1680)
...||.++|..+|.+|... +..++..+.+..+...+.+|+.+...|.......+...+.+...+.+++..|+|.+||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 6789999999999988876 46666666665556778899999888854444455566778999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccccc
Q 000310 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKI 779 (1680)
Q Consensus 706 AVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Iaq~aP~vfe~~-~~eI~~fiik~ILl~~~~~ 779 (1680)
|++|+.++...+.. .+.+++..+.+.+... .++.+.+.+||+|+.+.|..|.+. ...+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876522 3445666677766433 499999999999999999666554 7889999999998888887
Q ss_pred CCC-CCCCCCCc----hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhhHhHhH
Q 000310 780 RND-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1680)
Q Consensus 780 ~~~-~~~~W~d~----se~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEi~~~~~tp~~~ksrLR 851 (1680)
++. ....|+.. +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|+...+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 66778662 45688899999999999999866421 111122566777765 69999999889999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHH-
Q 000310 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEE- 928 (1680)
Q Consensus 852 LaAa~~lLKLAr~--~d~~i~~d~f~l~~l~~qD~~~~VR~~Fl~KL~kyL~~~~Lp~kY~~lf~la~~a~ep~~~~e~- 928 (1680)
+.|+.++||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+... ....
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~--~~~~~ 955 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSK--ELLAN 955 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhh--hhhhH
Confidence 9999999999976 5788899999888888999999999999999999999999999999999885422111 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccCCchhhhHHHHhhccCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCcc
Q 000310 929 KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDED 1008 (1680)
Q Consensus 929 K~~l~~~I~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIHlLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~ 1008 (1680)
+....+-...+++.+.....+.++.. ....|||+.+|.+|++||| |++....++..|-.+..++||.++.|...
T Consensus 956 ~~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~--- 1029 (1266)
T KOG1525|consen 956 KREEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEE--- 1029 (1266)
T ss_pred HHHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhh---
Confidence 11111112222222333333333221 5688999999999999999 99998889999999999999999999532
Q ss_pred ccccccccchH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCC
Q 000310 1009 VKSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPY 1082 (1680)
Q Consensus 1009 ~~~~~~~~eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~W~lq~yPGkV~LPs~LF~p~ 1082 (1680)
.+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||+++||..+|.+.
T Consensus 1030 -------~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~ 1102 (1266)
T KOG1525|consen 1030 -------NENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSP 1102 (1266)
T ss_pred -------hccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCc
Confidence 1222 2333344456667777643 3456799999999999998775 6799999999999999999998
Q ss_pred CCCCcccccccccccccccchh
Q 000310 1083 EKKEGDDSLASERQTWLADESV 1104 (1680)
Q Consensus 1083 ~s~~~~~a~~~~~K~yLpde~~ 1104 (1680)
.+ .+ -...++|+|+++-
T Consensus 1103 ~~----kn-~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1103 KD----KN-FINNKIYIPEETE 1119 (1266)
T ss_pred ch----hh-hccccccCCchhc
Confidence 64 22 2468999999943
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 2e-17
Identities = 94/638 (14%), Positives = 201/638 (31%), Gaps = 138/638 (21%)
Query: 507 HQDGDAPEIQ---KKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNT 563
H D + E Q K IL F E+ F+ + + + D
Sbjct: 6 HMDFETGEHQYQYKDILSVF-------------EDAFV-----DNFDCKDVQ----DM-- 41
Query: 564 SFDQAFTGR--DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEIL----------L 611
+ D ++ A TL K ++ ++ V+E+L +
Sbjct: 42 -PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPI 98
Query: 612 EVAAQKSSANAQFMQSCMDIL-GILARFSPLLLGGTEEELVNLLKEENEIIKEG---ILH 667
+ ++ S + D L F+ + + + L++ ++ ++
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 668 --------VLAKAGGTIREQ--------------LAATSSSVDLL--LERLCLEGSRRQA 703
+A L +S +L L++L +
Sbjct: 157 GVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 704 KYAVHALAAITKDDGLKS-LSVL-----YKR--LV-DMLEEKTHLPAVLQSLGCIAQTAM 754
+ H+ + +++ L L Y+ LV ++ A +L C +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC--KI-- 268
Query: 755 PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA 814
+ TR ++ +F+ + + + + D + LLK + LP +
Sbjct: 269 -LLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVL 323
Query: 815 HIRPGIDDLLG-ILKSMLS---------YGEMSEDIESS--SVDKAHLR-LASAKAVLRL 861
P ++ ++ L+ +++ IESS ++ A R + +V
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 862 SRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK 921
IP + L S + ++K+H+Y L++ K I
Sbjct: 384 ----SAHIPTILLSLIWFDVIKSDVM---VVVNKLHKY---SLVE-KQPKESTISI---- 428
Query: 922 SPE-FEEEKQNLADIIQMHHQM-KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDI 979
P + E K L + +H + I D++ P Y+ Y HH +I
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH-LKNI 484
Query: 980 DECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE-- 1033
+ + + F +V+ F+ + H + S ++ + I + E
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 1034 --DIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVF 1069
I+D + IC + R++ M ++ +F
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLL-RIALMAEDE-AIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1680 | ||||
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 2e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.004 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.004 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1680 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.56 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.43 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.42 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.36 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.09 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.88 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.69 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.65 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.62 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.36 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.12 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.55 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.45 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.99 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.81 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.79 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.72 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.71 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.65 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.39 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.3 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 96.0 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 95.34 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 95.13 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 94.93 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 92.87 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 91.66 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 90.82 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 90.43 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 90.26 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 87.23 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 84.29 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 83.58 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 83.28 | |
| d2g3ra1 | 53 | p53-binding protein 1, 53BP1 {Human (Homo sapiens) | 83.24 | |
| d1wgsa_ | 133 | Probable histone acetyltransferase MYST1 {Mouse (M | 81.81 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.5e-09 Score=81.90 Aligned_cols=367 Identities=13% Similarity=0.144 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999864179994314874899999832021105898212788899987786512999999915899999999982
Q 000310 29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGT 108 (1680)
Q Consensus 29 rL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~LkdIF~l~i~q 108 (1680)
|...+.+.+..+.++....+.+....+...|++ +|.-++.+||..+..||..+..-. ...++..+...++..
T Consensus 20 R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~~------~~~~~~~l~~~L~~~ 91 (1207)
T d1u6gc_ 20 RFMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV------KEYQVETIVDTLCTN 91 (1207)
T ss_dssp HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_conf 999999999987230144576889999999999--967998799999999999999767------686699999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16998889987146999999998-432521001698-4189999999999732499825199999999999960244553
Q 000310 109 FSGLKDTGGPSFGRRVVILETLA-KYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQ 186 (1680)
Q Consensus 109 l~~L~d~~~p~f~q~~~LLE~LA-~vks~vl~~DL~-~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~Ip 186 (1680)
+. +.+...-.-....|.++- ..-.. ...-. ...+...+...+.+.........+.....+++..++.-....-
T Consensus 92 l~---~~~~~~r~~~~~~L~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l 166 (1207)
T d1u6gc_ 92 ML---SDKEQLRDISSIGLKTVIGELPPA--SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL 166 (1207)
T ss_dssp TT---CSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HC---CCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56---896326599999999999966320--0231127889999999998763477778999999999999998756766
Q ss_pred ----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf ----889999999713798578999999999995454-----47999999998306999998873038899999984163
Q 000310 187 ----EDLLVILLSALGRNKNDTARRLAMNVIEQCAGK-----LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP 257 (1680)
Q Consensus 187 ----~~vLd~IL~~l~~~k~~~A~~lA~~ii~~~~dk-----L~~~I~qyf~sil~~d~~~~~~~~~~h~Li~eL~~~~P 257 (1680)
..++..++..+.... ..-+.-|...+...+.. +...+...+..+..... ......+-.++-.|.+..|
T Consensus 167 ~~~~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~~l~~l~~~~~ 243 (1207)
T d1u6gc_ 167 VNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS--MSTTRTYIQCIAAISRQAG 243 (1207)
T ss_dssp TTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS--SCSCTTHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHCC
T ss_conf 8779999999998808999-899999999999999877998799999999998705998--8999999999999998761
Q ss_pred HHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHH------------------------
Q ss_conf 034----3112112012357776899999999998624899980200499999998------------------------
Q 000310 258 QIL----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL------------------------ 309 (1680)
Q Consensus 258 ~lL----~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL------------------------ 309 (1680)
..+ ..++|.+..-+..++.++|..|...+..+...-+..+...++.++...+
T Consensus 244 ~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~ 323 (1207)
T d1u6gc_ 244 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 323 (1207)
T ss_dssp GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 54677799999999988258617778999999999998674654455999999999987407300034678877655540
Q ss_pred -------------HHHCCCCHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf -------------30059993399999999698783199999--867899999866079716799999999999653213
Q 000310 310 -------------KRLTDRIVAVRMSVLEHVKSCLLTDPSRA--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL 374 (1680)
Q Consensus 310 -------------~R~~Dks~~VR~~~V~~~~~iL~s~p~~~--~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l 374 (1680)
.-..|.+..||...+++...++.+.|... ...++.+.|..++.|.++.||.+++.++..+.....
T Consensus 324 ~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 403 (1207)
T d1u6gc_ 324 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 403 (1207)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 11013566788875220133899999999998689888999999999999999998459854899999999999997303
Q ss_pred CCC----------------------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 788----------------------9888999997603689369999999999999986
Q 000310 375 NSI----------------------PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 375 ~~V----------------------~~elL~~laeR~RDKK~~VRkeAi~~La~LY~~~ 411 (1680)
... -..++..+...++++...+|..++..+..+....
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~ 462 (1207)
T d1u6gc_ 404 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 462 (1207)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 21255515488876302699999876999999999864886567888999999999972
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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| >d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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