Citrus Sinensis ID: 000319
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1674 | 2.2.26 [Sep-21-2011] | |||||||
| Q5F3U9 | 1412 | Sister chromatid cohesion | yes | no | 0.602 | 0.713 | 0.243 | 2e-69 | |
| Q9NTI5 | 1447 | Sister chromatid cohesion | yes | no | 0.602 | 0.697 | 0.243 | 3e-69 | |
| Q4VA53 | 1446 | Sister chromatid cohesion | yes | no | 0.602 | 0.697 | 0.241 | 1e-68 | |
| Q6TRW4 | 1447 | Sister chromatid cohesion | yes | no | 0.602 | 0.697 | 0.241 | 3e-68 | |
| Q5U241 | 1464 | Sister chromatid cohesion | N/A | no | 0.603 | 0.690 | 0.235 | 3e-68 | |
| Q498H0 | 1448 | Sister chromatid cohesion | N/A | no | 0.603 | 0.698 | 0.238 | 3e-67 | |
| Q29RF7 | 1337 | Sister chromatid cohesion | no | no | 0.605 | 0.757 | 0.240 | 2e-63 | |
| A4L9P7 | 1333 | Sister chromatid cohesion | no | no | 0.605 | 0.759 | 0.239 | 3e-63 | |
| A1L1F4 | 1320 | Sister chromatid cohesion | no | no | 0.594 | 0.753 | 0.238 | 8e-63 | |
| Q5F3V3 | 1330 | Sister chromatid cohesion | no | no | 0.605 | 0.762 | 0.240 | 2e-62 |
| >sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3 | Back alignment and function desciption |
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Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 266/1091 (24%), Positives = 489/1091 (44%), Gaps = 83/1091 (7%)
Query: 9 LKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNA---IVQPVLL 65
+KE+ K+ +K+ +V+ LK +++Q E + +LN + L
Sbjct: 19 VKEISDKI-----SKEEMVRRLKMVVKTFMDMDQDSE----EEKELYLNLALHLASDFFL 69
Query: 66 KHQDKDVKLLVATCICEITRITAPEAPYSD-----DVLKLIVGTFSGLKDTGGPSFGRRV 120
KH DKDV+LLVA C+ +I RI APEAPY+ D+ I GL+DT P F R
Sbjct: 70 KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 129
Query: 121 VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE 179
+LE +A +S + +LE +E+ ++Y T F+V ++ H + V M +M ++ E +
Sbjct: 130 YLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGD 189
Query: 180 DIQEDLLVILLSAL---GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS-MSGDSRPG 235
+ ++LL +L L +N N A LA ++++ A +E I F M G +
Sbjct: 190 TVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSIS 249
Query: 236 HSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 295
++I ++Y +L V+P L +L ++ + RL+ V L+ +F S
Sbjct: 250 DLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELAS 309
Query: 296 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-DAPQILTALCDRLLDFDENV 354
Q ++ +L R D V +R+ ++ CL+ P A D + L R D +E +
Sbjct: 310 QNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAKDLTEYLKV---RSHDPEEAI 366
Query: 355 RKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNG 414
R V+ I A L + + V ER DK V++ M LA I++ L++ G
Sbjct: 367 RHDVIVSIVTAAKKDLLLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYSLQSEAG 426
Query: 415 SINQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 473
+ WI K+L Y +E + + P +R++ +++ D
Sbjct: 427 KEAAKQISWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETNERMKCLYYLYATLDS 486
Query: 474 IEMKALEKILEQKQRLQQEMQRYLSL-RQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKA 532
+KAL ++ + + L+ +++ + L +Q D + I K++ V++R+ +P KA
Sbjct: 487 NAVKALNEMWKCQNLLRHQVKDLVDLIKQPKTDASSKAIFSKVM----VITRNLPDPGKA 542
Query: 533 EENFLILDQL--KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-AKHRLYDFLSTLS 589
++ Q+ D + L L+ S QA ++ K LG K FL +
Sbjct: 543 QDFMKKFTQVLEDDEKIRSQLEMLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIK 602
Query: 590 M---KCSYLLFNKEHVKEILLEVAAQ---------KSSANAQFMQSCMDILGILARFSPL 637
+ + + + E + ++ +V + Q +++ +++L +L+ P+
Sbjct: 603 FLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPI 662
Query: 638 LLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 695
E E L+ LK ++E + E L + G I E S++ +L +G
Sbjct: 663 SFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKAKKGP 722
Query: 696 RRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVF 753
RQAKYA+H + AI + + +++ L L+ HL L ++G IA A F
Sbjct: 723 PRQAKYAIHCINAIFSSKETQ-FAQIFEPLHKSLDPSNFEHLITPLVTIGHIAMLAPDQF 781
Query: 754 ETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLLKIYGIKTLVKSYLPVKD 809
+S + FI +L T W ++ S L+KI IK +V+ L +K+
Sbjct: 782 AAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETLVKIQAIKMMVRWLLGMKN 841
Query: 810 AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ--WDHKIPV 867
H + G L + + S G+++E + S D + LRLA+ A+++L+++ + I +
Sbjct: 842 NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITL 901
Query: 868 DVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA--CAFLFGITESKSPEFEEE- 924
+ + L Q +++F K+H+ + L +Y CA +K P E
Sbjct: 902 EQYQLCALAINDECYQVRQIFAQKLHKGLSRLRLPLEYMAICALC-----AKDPVKERRA 956
Query: 925 --KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVK 982
+Q L I + + + +V S PEY++PY +H AH PD + +D++
Sbjct: 957 HARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYTIHLLAHD--PDYVKVQDIE 1012
Query: 983 AFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIV---DAAKSKN 1039
+ + L+FI+ +L+ K+E+ S + I + +IK ++D DA ++
Sbjct: 1013 QLKDIKECLWFILEILMAKNEN--------NSHAFIRKMVENIKQTKDAQGPDDAKMNEK 1064
Query: 1040 SHAICDLGLSI 1050
+ +CD+ ++I
Sbjct: 1065 LYTVCDVAMNI 1075
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Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis. Gallus gallus (taxid: 9031) |
| >sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 | Back alignment and function description |
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| >sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1674 | ||||||
| 147777785 | 1922 | hypothetical protein VITISV_030148 [Viti | 0.972 | 0.847 | 0.664 | 0.0 | |
| 255585406 | 1735 | androgen induced inhibitor of proliferat | 0.964 | 0.930 | 0.646 | 0.0 | |
| 224139450 | 1417 | predicted protein [Populus trichocarpa] | 0.838 | 0.990 | 0.718 | 0.0 | |
| 356522079 | 1641 | PREDICTED: sister chromatid cohesion pro | 0.967 | 0.986 | 0.638 | 0.0 | |
| 356564452 | 1642 | PREDICTED: sister chromatid cohesion pro | 0.967 | 0.986 | 0.631 | 0.0 | |
| 449443672 | 1692 | PREDICTED: sister chromatid cohesion pro | 0.896 | 0.887 | 0.654 | 0.0 | |
| 224089565 | 1411 | predicted protein [Populus trichocarpa] | 0.789 | 0.936 | 0.696 | 0.0 | |
| 356557993 | 1656 | PREDICTED: sister chromatid cohesion pro | 0.972 | 0.983 | 0.605 | 0.0 | |
| 356532370 | 1648 | PREDICTED: sister chromatid cohesion pro | 0.969 | 0.984 | 0.604 | 0.0 | |
| 186530158 | 1607 | sister chromatid cohesion protein PDS5 [ | 0.946 | 0.986 | 0.583 | 0.0 |
| >gi|147777785|emb|CAN75734.1| hypothetical protein VITISV_030148 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 2185 bits (5662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1128/1698 (66%), Positives = 1346/1698 (79%), Gaps = 70/1698 (4%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K +QQL++VGSKLE PP+TKD LVKLLKQAATCL+EL+QSP ASILE++QP LNAIV
Sbjct: 56 MDQKRQQQLRDVGSKLENPPATKDALVKLLKQAATCLTELDQSPSASILESLQPSLNAIV 115
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLK----LIVGTFSGLKDTGGPSF 116
+P LLKHQD+DVKLLVATCICEITRITAPEAPYSDDVLK LIV TFSGL DT GP+F
Sbjct: 116 KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFRLIVSTFSGLSDTNGPAF 175
Query: 117 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 176
GRRVVILETLA+YRSCVVMLDLECD+LVNEM+ TFF+VA DDHPESVL+SMQTIM+VLLE
Sbjct: 176 GRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFFSVARDDHPESVLTSMQTIMVVLLE 235
Query: 177 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 233
ESED++EDLL +LS LGRNK+D ARRLAMNVIE CA KLE GIKQFLVSS+SGD+R
Sbjct: 236 ESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVIEHCAAKLEPGIKQFLVSSISGDNR 295
Query: 234 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 293
+S IDYHEVIYD+YRC+PQILSGV PYLTGELLTD LDTRLKAV LVGDLFA+PG A
Sbjct: 296 SMNSEIDYHEVIYDIYRCAPQILSGVTPYLTGELLTDNLDTRLKAVKLVGDLFALPGLAI 355
Query: 294 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 353
+E F +FSEFLKRL DR+V VRMSVLEHVKSCLL++PSRA+APQI++ALCDRLLD+DEN
Sbjct: 356 SEAFQPIFSEFLKRLADRVVGVRMSVLEHVKSCLLSNPSRAEAPQIISALCDRLLDYDEN 415
Query: 354 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 413
VRKQVVAVICDVACH+L+SIPVET KLVAERLRDKSVLVK+YT+ERLA+I+ CLR +
Sbjct: 416 VRKQVVAVICDVACHSLSSIPVETXKLVAERLRDKSVLVKKYTLERLAEIYNLYCLRCCD 475
Query: 414 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 473
GS+N +EF+WIPGKILRC YDKDF SDTIESVLC +LFPT FS+KD+V+HWVR+FSGFD+
Sbjct: 476 GSLNPSEFDWIPGKILRCFYDKDFRSDTIESVLCETLFPTEFSIKDKVKHWVRVFSGFDK 535
Query: 474 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 533
+E+KALEKILEQKQRLQQEMQRYLSL+QMHQDG+ PEIQKK+ +C R+MSR FA+PAKAE
Sbjct: 536 VEVKALEKILEQKQRLQQEMQRYLSLKQMHQDGEGPEIQKKVTYCLRIMSRLFADPAKAE 595
Query: 534 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 593
ENF ILDQLKD N+WKIL +L+D TSF QA + RDDLL+ILG KHRLYDFL TLS+KCS
Sbjct: 596 ENFQILDQLKDVNIWKILSSLIDPKTSFHQACSSRDDLLRILGEKHRLYDFLGTLSLKCS 655
Query: 594 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE 653
YLLFNKEHVKE LLE A QKSS N Q++QSCM++L +LARFSPLLL G EE+LV+LLK++
Sbjct: 656 YLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAEEDLVHLLKDD 715
Query: 654 NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 713
NEIIKEG+LH+LAKAGGTIREQLA TSSSVDL+LERLCLEGSRRQAKYAVHALAAITKDD
Sbjct: 716 NEIIKEGVLHILAKAGGTIREQLAVTSSSVDLILERLCLEGSRRQAKYAVHALAAITKDD 775
Query: 714 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 773
GLKSLSVLYKRLVDML++KTHLPAVLQSLGCIAQTAMPVFETRESEIE FIK +IL+CS+
Sbjct: 776 GLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQTAMPVFETRESEIEGFIKCEILKCSS 835
Query: 774 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 833
I+GIKT+VKSYLPVKDAH+R GIDDLL ILK++L +GE+S
Sbjct: 836 --------------------IFGIKTMVKSYLPVKDAHLRLGIDDLLEILKNILLFGEIS 875
Query: 834 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 893
+DIESS+VDKAHLRLA+AKA+LRL+R WDHKIPV VFHLTLRT E SFPQAKKLFLSKVH
Sbjct: 876 KDIESSAVDKAHLRLAAAKAILRLARHWDHKIPVGVFHLTLRTSESSFPQAKKLFLSKVH 935
Query: 894 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 953
QY+KDRLLDAKYACAF F I S+ EFEE+K NL DIIQM+HQ KARQ+S QSDA+S A
Sbjct: 936 QYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHNLGDIIQMYHQAKARQLSTQSDASSLA 995
Query: 954 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEAS--- 1010
YPE+I+PYLVH AHHSCPDIDECKDVKAFE +Y +L+ +SML+H DED K+EA
Sbjct: 996 -YPEFILPYLVHALAHHSCPDIDECKDVKAFEPIYWKLHIFLSMLVHGDEDTKAEAGADK 1054
Query: 1011 NKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSL 1070
KE IS IISIF+SIK SEDIVDAAKSKNSHA+CDLGLSI KRL + +D+ QG+ SS++L
Sbjct: 1055 EKEGISAIISIFQSIKLSEDIVDAAKSKNSHALCDLGLSIIKRLVQKQDDVQGLTSSITL 1114
Query: 1071 PSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEK 1130
P LYK EKKEGDDS+ASE QTWLADE VLTHFESLKLET+ +V E ++B ++
Sbjct: 1115 PPILYKLCEKKEGDDSVASEGQTWLADEXVLTHFESLKLETNGMVDEE----GVINBNDR 1170
Query: 1131 DGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNK 1190
DGNE+PLGKMI++LKS+G K K K KKSSPA+ K ENDVDIL+MVREIN D +G+ +K
Sbjct: 1171 DGNELPLGKMIKRLKSRGTKSRKVKNKKSSPAKKKHAENDVDILKMVREINFDAMGMSSK 1230
Query: 1191 FESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAP 1250
FESSNGH++ ++ K+ ++E+ K+R++T+VT VPKRRRS SA P+S SK
Sbjct: 1231 FESSNGHEYSSHRKSKMGQKHEKKKRRRSTEVTPVTVPKRRRSSSAKSSL--PRSASKGS 1288
Query: 1251 LRASGGGSHHAGVSSFQSIDMDDDI-SESEVKISTKKKKFTSNESDSFASRFQGSRSFSS 1309
+RA H AGVSSFQS DMD ++ ++SE K+S K ESD S F+ + +F S
Sbjct: 1289 VRALRDNLHQAGVSSFQSTDMDSEVHTDSEDKVSALKNIGEPAESDLLVSCFRRNSNFLS 1348
Query: 1310 KRKGKSADLGHDNEADEVGEADEGDLKNSDMLS-----------KSPVGSAKKRKRRSIA 1358
KRKGK +D G ++EA VGE + DL+ ++ KSP GS KKRKRRSIA
Sbjct: 1349 KRKGKGSDKGDNDEARIVGEDXDHDLRKPNVPMETDKIHTASNVKSPTGSTKKRKRRSIA 1408
Query: 1359 GLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1418
GLAK T+K + DLI RIKVWWPMDKQFYEG +KSYDP +KHV+LYDD DVEVLR
Sbjct: 1409 GLAKSTSKEGRSHAADLIDCRIKVWWPMDKQFYEGXVKSYDPKARKHVVLYDDGDVEVLR 1468
Query: 1419 LDKERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKSMKD-----KG 1473
L +ERWEL++N KP K K NS K VS+ +KNK G++QNKK +K +G
Sbjct: 1469 LARERWELVENVAKPAK--KLNSSKTPPSKGVSADQKNKFLNGSQQNKKPIKSSSSKVRG 1526
Query: 1474 KRTPKKSLKDRPKFA----SKSYFSEDEDSEKTDVSDPKPTTVSKVLETNSGDSQGKRAD 1529
KRTP+K+LK K + + F E E +DVS+P+P +SKV + NSGDS+ K +
Sbjct: 1527 KRTPRKNLKHVEKAGLESNTATEFCEVESRGSSDVSNPEPNAMSKVEDMNSGDSEEKLNE 1586
Query: 1530 MEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKPAEEVGSVPQD 1589
++ LT EESDKE K +SE + VED E + +ES++ +K SE +P E+ + QD
Sbjct: 1587 RSEKGLTGGEESDKEEKSVSEGKQVEDKEKRPSDTEESEKEEKPYSEGRPVEDKEGICQD 1646
Query: 1590 EK---------SDEEDKEEAESSKGSREEANEDGKSDSEGNEEINGDGSSPMNPEKSQNE 1640
+ S+E + EE++ S EEAN++ +SDSE + N + S+P + +KS +
Sbjct: 1647 AQESPEKKESYSEEREPEESKRDSPSGEEANKEEQSDSEETQAENLE-SNPTDXDKSSKK 1705
Query: 1641 LPKPVDADDAEISDDEPL 1658
P + +DA+ SDDEPL
Sbjct: 1706 TSDPSNTEDAKNSDDEPL 1723
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585406|ref|XP_002533398.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223526757|gb|EEF28984.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224139450|ref|XP_002323118.1| predicted protein [Populus trichocarpa] gi|222867748|gb|EEF04879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356522079|ref|XP_003529677.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356564452|ref|XP_003550468.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443672|ref|XP_004139601.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224089565|ref|XP_002308759.1| predicted protein [Populus trichocarpa] gi|222854735|gb|EEE92282.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356557993|ref|XP_003547294.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532370|ref|XP_003534746.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|186530158|ref|NP_001119390.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332008170|gb|AED95553.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1674 | ||||||
| TAIR|locus:2169058 | 1607 | AT5G47690 [Arabidopsis thalian | 0.747 | 0.779 | 0.636 | 0.0 | |
| TAIR|locus:2116787 | 873 | AT4G31880 [Arabidopsis thalian | 0.134 | 0.257 | 0.463 | 5.1e-64 | |
| RGD|1307094 | 1333 | Pds5a "PDS5, regulator of cohe | 0.436 | 0.548 | 0.245 | 3.6e-63 | |
| UNIPROTKB|F1N7G8 | 1449 | PDS5B "Uncharacterized protein | 0.328 | 0.379 | 0.258 | 7.7e-63 | |
| UNIPROTKB|Q29RF7 | 1337 | PDS5A "Sister chromatid cohesi | 0.436 | 0.546 | 0.245 | 1.6e-62 | |
| UNIPROTKB|Q5F3U9 | 1412 | PDS5B "Sister chromatid cohesi | 0.328 | 0.389 | 0.260 | 2.2e-62 | |
| UNIPROTKB|F1P3B8 | 1446 | PDS5B "Sister chromatid cohesi | 0.328 | 0.380 | 0.260 | 3.3e-62 | |
| ZFIN|ZDB-GENE-091217-2 | 1415 | pds5b "PDS5, regulator of cohe | 0.330 | 0.390 | 0.257 | 9.5e-62 | |
| UNIPROTKB|E2R7R4 | 1337 | PDS5A "Uncharacterized protein | 0.436 | 0.546 | 0.245 | 1.4e-61 | |
| MGI|MGI:2140945 | 1446 | Pds5b "PDS5, regulator of cohe | 0.328 | 0.380 | 0.256 | 1.8e-61 |
| TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4123 (1456.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 804/1264 (63%), Positives = 984/1264 (77%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K E+QLKE+GSKL+ P +KD L+KLLK+AA CLSEL QSPP ++L+++QPFL+A++
Sbjct: 1 MAQKPEEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVI 60
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLK----LIVGTFSGLKDTGGPSF 116
+P +L HQDKDVKLLVA+C+ EITRITAPEAPYSD+++K LIV F+GL D GPSF
Sbjct: 61 KPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSF 120
Query: 117 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 176
GRRV+ILET+AKYRSCVVMLDLECD+LV E+++TF VA DDHPE V SSMQ IMIVLLE
Sbjct: 121 GRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLE 180
Query: 177 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 233
ESED+QE LL+ILLS LGRN++D ARRLAM VIE CA K+E+ IKQFL+SSMSGDSR
Sbjct: 181 ESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDSR 240
Query: 234 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 293
S IDYHEVIYD+YRC+PQ LSGV PYLTGELL D+L+TRLK VGLVG+LF++PG
Sbjct: 241 FSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGLVGELFSLPGRVI 300
Query: 294 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 353
+E+F S+F EFLKRLTDR+V VRM++L+H+K CLL+DP RA+A QI++ALCDRLLD+DEN
Sbjct: 301 SEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIISALCDRLLDYDEN 360
Query: 354 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 413
+RKQVVAVICDV+ AL SIPV+T+KLVAERLRDK++LVK YTMERL ++FR CLR +
Sbjct: 361 IRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLTELFRVYCLRCAD 420
Query: 414 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 473
G ++ +F WIPGKILRCLYDKDF SDTIE +LC SLFP+ FSV+D+V+HW++IFSGFD+
Sbjct: 421 GKVDTGDFNWIPGKILRCLYDKDFRSDTIEYILCSSLFPSDFSVRDKVKHWIQIFSGFDK 480
Query: 474 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 533
+E KA EKILEQ+QR+QQEMQRYLS++Q Q DAPEIQKKILF FRVMSR+F++P K E
Sbjct: 481 VETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILFGFRVMSRAFSDPPKTE 540
Query: 534 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 593
+NFLILDQLKDAN+WKIL NLLD NTS QA RDD+LKIL KH LYDFLSTLS+KCS
Sbjct: 541 QNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSEKHSLYDFLSTLSIKCS 600
Query: 594 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTXXXXXXXXXXX 653
YLLF+KE+VKEIL EV+ +KSS N +Q CMD LG+LA F P L G
Sbjct: 601 YLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPSLFDGAEEELISFLKDD 660
Query: 654 XXIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 713
++KEG L +LAKAGGTIRE L +SSVDLLLER+C+EG+R+QAKYAVHALA+ITKDD
Sbjct: 661 DEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRKQAKYAVHALASITKDD 720
Query: 714 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRXXXXXXXXXXXXLRCSN 773
GLKSLSVLYKRLVDMLE+K + PAVLQ LGCIAQ AMPV+ETR L+ +
Sbjct: 721 GLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILKLKS 780
Query: 774 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 833
+ +D K WDD+SE+C LKIYGIKTLVKSYLP KDA +R G+DDLLGILK++LS+GE+S
Sbjct: 781 ETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVS 840
Query: 834 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 893
ED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP+++FHLTL+TPEI FP AKK+FL KVH
Sbjct: 841 EDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIPIEIFHLTLKTPEIPFPTAKKIFLGKVH 900
Query: 894 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 953
QYVKDR+L+ KYAC+FLF IT S E EE+K NLADIIQ +Q K R+IS Q+DANS
Sbjct: 901 QYVKDRVLEMKYACSFLFDITGSNVLESEEDKHNLADIIQHSYQTKVRKISAQTDANSVT 960
Query: 954 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKE 1013
YP +I+PYLVH AHHSCPD+++CKDVK +E++Y +LY I+SML+HK+ED K+E +KE
Sbjct: 961 LYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISMLLHKEEDGKTEDIDKE 1020
Query: 1014 XXX--XXXXXXXXXKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLP 1071
K SED+ DA KSKNSHAIC+LGLSI L++ E + QG + VSLP
Sbjct: 1021 REYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDLQGEITPVSLP 1080
Query: 1072 STLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHE--VVGSEIARHEALDDLE 1129
TLYKP EK EGD S E + WLADE+VL HF +LKLE+H V + + +E + D E
Sbjct: 1081 PTLYKPSEKVEGDKSQVGEEKLWLADETVLLHFRALKLESHADASVIPQTSENEVMIDGE 1140
Query: 1130 KDGNEVPLGKMIXXXXXXXXXXXXXXXXXXXXXEVKGTENDVDILQMVREINLDNLGVLN 1189
DGNE+PLGK++ E + +NDVD+L+MVREINLD+L +L+
Sbjct: 1141 SDGNEIPLGKIVERLRAQGTKTRKGKKNKSVPAEDENGKNDVDVLKMVREINLDHLQMLD 1200
Query: 1190 KFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSF-PVPKRRRSLSAHGGFRTPKSNSK 1248
KFESSNGHKH PS++ ++ +++ KR D TS VPKRRRS S H ++ S K
Sbjct: 1201 KFESSNGHKHSPSERAEICQRDQKGNKRNVGDATSVVSVPKRRRSSSGHSPYKFSNSGPK 1260
Query: 1249 APLR 1252
L+
Sbjct: 1261 VQLK 1264
|
|
| TAIR|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-091217-2 pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2140945 Pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1674 | |||
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 3e-06 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 7e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 2e-05 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 4e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 9e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 1e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 1e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 2e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 3e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-04 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 5e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 6e-04 | |
| PLN02976 | 1713 | PLN02976, PLN02976, amine oxidase | 6e-04 | |
| TIGR01651 | 600 | TIGR01651, CobT, cobaltochelatase, CobT subunit | 6e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 7e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 0.001 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.003 | |
| PLN02967 | 581 | PLN02967, PLN02967, kinase | 0.003 | |
| COG5406 | 1001 | COG5406, COG5406, Nucleosome binding factor SPN, S | 0.004 |
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 3e-06
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 18/151 (11%)
Query: 1507 PKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDE 1566
P P T SG A+ E+ +E + +E +
Sbjct: 46 PAPPA-----PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSG----SG 96
Query: 1567 SDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEING 1626
S+ V + E + ++ E+ +S E
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE--- 153
Query: 1627 DGSSPMNPEKSQNELPKPVDADDAEISDDEP 1657
+ S N+ P E S +EP
Sbjct: 154 ------SHNPSPNQQPSSFLQPSHEDSPEEP 178
|
Length = 413 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|215527 PLN02976, PLN02976, amine oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|215521 PLN02967, PLN02967, kinase | Back alignment and domain information |
|---|
| >gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1674 | |||
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 100.0 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 99.72 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 98.97 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.66 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.57 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.44 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.25 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.23 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.0 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.87 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.74 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.53 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.5 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.48 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.36 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.31 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.22 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.06 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.98 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.95 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 96.93 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.85 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.78 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 96.65 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 96.65 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.65 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 96.6 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.48 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.47 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.44 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.26 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.24 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 95.98 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.96 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.78 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.28 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 95.24 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.15 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.97 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 94.84 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.73 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.51 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 94.49 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 94.32 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.29 | |
| PF09038 | 122 | 53-BP1_Tudor: Tumour suppressor p53-binding protei | 94.26 | |
| KOG4675 | 273 | consensus Uncharacterized conserved protein, conta | 94.26 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.18 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 94.02 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 93.84 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 93.53 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.39 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 93.32 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.16 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 92.8 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 92.79 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 92.71 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 92.67 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 92.63 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 92.0 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.92 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 91.53 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 90.85 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 90.72 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 90.49 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 90.39 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 90.15 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 90.04 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 90.02 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.81 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 89.73 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 89.24 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.04 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 88.69 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 88.44 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 88.42 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 88.15 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 88.09 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 87.73 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 87.7 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 87.54 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 87.24 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 87.18 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 86.55 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 83.12 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 82.69 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 81.96 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 81.64 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 80.1 |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-134 Score=1307.29 Aligned_cols=1063 Identities=30% Similarity=0.463 Sum_probs=896.4
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchHHHHHHHHHHHhhhcCC
Q 000319 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1674)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1674)
..-|-+....|++++||++||++|++||++++|++ .+++++.|++.+|+++.||+|+|+|||+|||||+|||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34455666678999999999999999999999996 6999999999999999999999999999999999999999999
Q ss_pred CCCCChh----HHHHHHHHhcCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000319 90 EAPYSDD----VLKLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 165 (1674)
Q Consensus 90 dAPytdd----~lkli~~~f~~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~~Li~~lF~~ff~iv~~~~~~~V~~ 165 (1674)
||||++. +|++|++||.||+|+.+|||.||+||||+||+||.|++|.|.+|++++.+||++||++++.+|+.+|++
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 9999995 555999999999999999999999999999999955555555699999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCC-CCCCCcchH
Q 000319 166 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 241 (1674)
Q Consensus 166 ~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~~---~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~-~~~~~~~~~ 241 (1674)
|.+||+.+|.|.+.||.++|++||.+|..++. ..|++||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999975543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000319 242 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 321 (1674)
Q Consensus 242 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 321 (1674)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000319 322 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 401 (1674)
Q Consensus 322 ~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La 401 (1674)
++++||.+||+...+..+..+++.|+.|+|++||..+|.++|+++.+.+..+|. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-HhhhccCCCccccccccchHHHhhhhccCCCCc-hhHHHHhhcCCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000319 402 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 479 (1674)
Q Consensus 402 ~LY~~-~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 479 (1674)
++|+. ||..++++...+..|.|||++||++||.|+.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 555666777888999999999999999998764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--chHHHHHHHHHHhcC
Q 000319 480 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 557 (1674)
Q Consensus 480 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~~~L~kf~kl--nD~Ri~kLLk~~id~ 557 (1674)
..|+++|+++|.+|+.||.++...+.++ ..+++...|..++..||||.......++|++. .+..+..++..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765443 77788888999999999999999999999763 467889999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000319 558 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 623 (1674)
Q Consensus 558 ~td~~tv~~a~kELlkkL~~----~~~l~e~l~~Ll~RsS~lifNk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 623 (1674)
..+|.+..-.+++++.+++. +..+..+.+.|..|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 88888776556666666554 4457788899999999988887 777777765322111 111 122345
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000319 624 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 701 (1674)
Q Consensus 624 a~eLL~~IS~~~P~lFk~~--v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKy 701 (1674)
...||.++|..+|.+|... +..++..+....+...+.+|+.+.+.|..+....+...+.+...+.+++..|+|.|||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 6789999999999999876 46677666666666778899999888855454455566778999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccCcc
Q 000319 702 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKI 775 (1674)
Q Consensus 702 Avr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Iaq~ap~vfe~~-~~eI~~fIik~IL~~~~~~ 775 (1674)
|++|+.++...+.. .+..++..+.+.+... .++.+.+.+||+|+.+.|..|.+. ...+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876522 3445677777776544 499999999999999999666554 7889999999998888888
Q ss_pred CCC-CCCCCCC---c-hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhHHhHhH
Q 000319 776 RND-TKACWDD---R-SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 847 (1674)
Q Consensus 776 ~~~-~~~~W~d---~-se~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLR 847 (1674)
++. ....|+. . +..+.+|++|++++++||++...+.- +-.+...+.+|..++ +.|++..+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 775 6677876 2 45688899999999999999866421 111122566777765 69999999889999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHH
Q 000319 848 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEK 925 (1674)
Q Consensus 848 LaAa~~LLKLAr~--~d~~I~~d~f~l~~l~~qD~~~~VR~~Fl~KL~kyL~~~~Lp~kY~~lflla~~a~ep~~~~e~K 925 (1674)
+.|+.++||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+..... ..-+
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~-~~~~ 956 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKEL-LANK 956 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhh-hhHH
Confidence 9999999999976 578899999998888899999999999999999999999999999999998653311100 0001
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccCcchhhhHHHHhhccCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccCccc
Q 000319 926 QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDV 1005 (1674)
Q Consensus 926 ~~l~~~i~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIHlLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~~ 1005 (1674)
....+-...+++.+.....+.++. .....|||+.+|.+|++||| |+|....++..|-.+..++||.++.|...+
T Consensus 957 ~~~~t~~~~~~r~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~--- 1030 (1266)
T KOG1525|consen 957 REEETKNSASRREQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN--- 1030 (1266)
T ss_pred HHhhhhcchhhhhhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh---
Confidence 111111222222233333333321 15688999999999999999 999998899999999999999999996422
Q ss_pred cccccccccH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCCC
Q 000319 1006 KSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE 1079 (1674)
Q Consensus 1006 ~~~~a~~eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~W~lqsyPGkV~LPs~LF~p~~ 1079 (1674)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|..++|||+++||..+|.+..
T Consensus 1031 -------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1031 -------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred -------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence 232 2333444556667787643 3356799999999999997775 67999999999999999999986
Q ss_pred CCCcccccccccccccccch
Q 000319 1080 KKEGDDSLASERQTWLADES 1099 (1674)
Q Consensus 1080 s~~~~~a~~~~~k~yLpde~ 1099 (1674)
+ .+ -...++|+|+++
T Consensus 1104 ~----kn-~~~~k~~i~e~~ 1118 (1266)
T KOG1525|consen 1104 D----KN-FINNKIYIPEET 1118 (1266)
T ss_pred h----hh-hccccccCCchh
Confidence 4 22 246899999994
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix | Back alignment and domain information |
|---|
| >KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 1e-17
Identities = 94/638 (14%), Positives = 201/638 (31%), Gaps = 138/638 (21%)
Query: 503 HQDGDAPEIQ---KKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNT 559
H D + E Q K IL F E+ F+ + + + D
Sbjct: 6 HMDFETGEHQYQYKDILSVF-------------EDAFV-----DNFDCKDVQ----DM-- 41
Query: 560 SFDQAFTGR--DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEIL----------L 607
+ D ++ A TL K ++ ++ V+E+L +
Sbjct: 42 -PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPI 98
Query: 608 EVAAQKSSANAQFMQSCMDIL-GILARFSPLLLGGTEEELVNLLKEENEIIKEG---ILH 663
+ ++ S + D L F+ + + + L++ ++ ++
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 664 --------VLAKAGGTIREQ--------------LAATSSSVDLL--LERLCLEGSRRQA 699
+A L +S +L L++L +
Sbjct: 157 GVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 700 KYAVHALAAITKDDGLKS-LSVL-----YKR--LV-DMLEEKTHLPAVLQSLGCIAQTAM 750
+ H+ + +++ L L Y+ LV ++ A +L C +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC--KI-- 268
Query: 751 PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA 810
+ TR ++ +F+ + + + + D + LLK + LP +
Sbjct: 269 -LLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVL 323
Query: 811 HIRPGIDDLLG-ILKSMLS---------YGEMSEDIESS--SVDKAHLR-LASAKAVLRL 857
P ++ ++ L+ +++ IESS ++ A R + +V
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 858 SRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK 917
IP + L S + ++K+H+Y L++ K I
Sbjct: 384 ----SAHIPTILLSLIWFDVIKSDVM---VVVNKLHKY---SLVE-KQPKESTISI---- 428
Query: 918 SPE-FEEEKQNLADIIQMHHQM-KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDI 975
P + E K L + +H + I D++ P Y+ Y HH +I
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH-LKNI 484
Query: 976 DECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE-- 1029
+ + + F +V+ F+ + H + S ++ + I + E
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 1030 --DIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVF 1065
I+D + IC + R++ M ++ +F
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLL-RIALMAEDE-AIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1674 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 9e-05 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 1e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 8e-04 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.003 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 9e-05
Identities = 46/316 (14%), Positives = 91/316 (28%), Gaps = 18/316 (5%)
Query: 43 SPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIV 102
+ L V K +A C+ +TR E P +V
Sbjct: 763 GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPA-------VV 815
Query: 103 GTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPES 162
G F + R++ L +L + + + E+ S S E
Sbjct: 816 GQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQL------ELKSVILEAFSSPSEEV 869
Query: 163 VLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQ 222
++ + + + + +L + S + +I + +
Sbjct: 870 KSAASYALGSISVGNLPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVE 927
Query: 223 FLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 282
+ + + + V + + + ++P L G L++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTR-NVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAV 986
Query: 283 GDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 340
+ + + +FLK L D + VR L S PS R +L
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVL 1046
Query: 341 TALCDRLLDFDENVRK 356
L + E +R+
Sbjct: 1047 PHLYNETKVRKELIRE 1062
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1674 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.54 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.39 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.39 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.33 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.06 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.78 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.58 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.58 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.56 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.25 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.05 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.37 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.27 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.93 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.76 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.69 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.5 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.49 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.42 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.32 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.22 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 95.52 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 94.72 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 94.67 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 94.47 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 91.6 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 90.18 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 88.8 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 87.53 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 86.66 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 85.75 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 84.88 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 83.44 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.9e-09 Score=82.27 Aligned_cols=365 Identities=14% Similarity=0.148 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-CC
Q ss_conf 99999999864179994314874899999831021215898212788889887775304999999746999999970-58
Q 000319 29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIVGTF-SG 107 (1674)
Q Consensus 29 rLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdAPytdd~Lkli~~~f-~~ 107 (1674)
|...+.+-+..+.++....+.+....+...|++ +|.-++.+||..+..||..+..-. | .+++.-++..+ ..
T Consensus 20 R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~~-~-----~~~~~~l~~~L~~~ 91 (1207)
T d1u6gc_ 20 RFMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV-K-----EYQVETIVDTLCTN 91 (1207)
T ss_dssp HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS-C-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHC-C-----HHHHHHHHHHHHHH
T ss_conf 999999999987230144576889999999999--967998799999999999999767-6-----86699999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHEE--CCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 9888998714699999999743242000--1698-318999999999973239981519999999999996023445---
Q 000319 108 LKDTGGPSFGRRVVILETLAKYRSCVVM--LDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDI--- 181 (1674)
Q Consensus 108 L~d~~~p~f~q~~~LLe~LA~vks~Vlm--~DL~-~d~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~I--- 181 (1674)
|.+.+...-.-....|.++- ..+.. ..-. ...++..+...+.+.........+.....+|+..++.-....
T Consensus 92 l~~~~~~~r~~~~~~L~~i~---~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~ 168 (1207)
T d1u6gc_ 92 MLSDKEQLRDISSIGLKTVI---GELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN 168 (1207)
T ss_dssp TTCSSSHHHHHHHHHHHHHH---HHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56896326599999999999---966320023112788999999999876347777899999999999999875676687
Q ss_pred -CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH
Q ss_conf -38899999996137985789999999999954544-----699999999830699999887403879999999516303
Q 000319 182 -QEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKL-----EAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI 255 (1674)
Q Consensus 182 -p~~vLd~IL~~l~~~~~~~A~~LA~~ii~~~~dkL-----~~~I~qyf~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~l 255 (1674)
...++..++..+.... ..-+.-|...+......+ ...+...+..+.... .......+-.++-.|.+..|..
T Consensus 169 ~~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~l~~l~~~~~~~ 245 (1207)
T d1u6gc_ 169 FHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND--SMSTTRTYIQCIAAISRQAGHR 245 (1207)
T ss_dssp THHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC--SSCSCTTHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCCHH
T ss_conf 79999999998808999-89999999999999987799879999999999870599--8899999999999999876154
Q ss_pred H----HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHH-------------------------
Q ss_conf 4----31011000123577768999999999986259999821004999999983-------------------------
Q 000319 256 L----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK------------------------- 306 (1674)
Q Consensus 256 L----~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~------------------------- 306 (1674)
+ ..++|.+..-+..++.++|..|...+..+...-+..+...++.++...+.
T Consensus 246 ~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~ 325 (1207)
T d1u6gc_ 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGG 325 (1207)
T ss_dssp GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 67779999999998825861777899999999999867465445599999999998740730003467887765554011
Q ss_pred ------------HHCCCCHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ------------0059993399999999698883199999--86789999986607971679999999999965321378
Q 000319 307 ------------RLTDRIVAVRMSVLEHVKSCLLTDPSRA--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 372 (1674)
Q Consensus 307 ------------R~~Dks~~VR~~~V~~~~~iL~s~p~~~--~~~eIi~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~ 372 (1674)
-..|.+..||...+++...++.+.|... ...++.+.|..++.|.++.||.+++.++..+.......
T Consensus 326 ~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~ 405 (1207)
T d1u6gc_ 326 DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPV 405 (1207)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 01356678887522013389999999999868988899999999999999999845985489999999999999730321
Q ss_pred C----------------------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8----------------------9888999997603689369999999999999987
Q 000319 373 I----------------------PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 373 V----------------------~~elL~~LaeR~RDKK~~VRkeAi~~La~LY~~~ 407 (1674)
. -..++..+...++++...+|..++..+..+....
T Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~ 462 (1207)
T d1u6gc_ 406 QSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 462 (1207)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 255515488876302699999876999999999864886567888999999999972
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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