Citrus Sinensis ID: 000329

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650---

MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQFQETSEESLSAVAGMFSSKAKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLESPRCDYDPLPKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVSTASSKLARESSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVADVYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVLLRLITKELALEKASMAGGR

ccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHcccccccHHHcccccHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccc

cHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHcHHHccHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHccccHHHccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccHHcccHHHHHHHHHHHHccccccccccccHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEcccc

MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLrslsspselaqSEDILRIFLMACEVRTVKLSVIGLSCIQKLishdavapSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQsrlhpenedNMAQALGICLRLLennrssdsvrNTAAATFRQAVALIFDHVVraeslpmgkfgsgahitrtnsvtgdvsrsinhseslehefasegpslrRETLTKAGKLGLRLLEDLTALAaggsaswlhvNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLrtnvenegetgepyfRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVtfldlplwHRILVLEILRGFCVEARTLRLLFQnfdmnpkntnVVEGMVKALARVVSSVQFQETSEESLSAVAGMFSSKAKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTdeavdvgevlesprcdydplpkcmgeTAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTinipnesdrrsavlqspgskrseslvdqkdnivltpkNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDraihsphattqeVSTASSKlaressgqysdfnVLSSLNSQLFESSALMHISAVKSLLSALHQLSHqcmigtsssfgptssqkigsISFSVERMISILVNNlhrveplwDQVVGHFLELADNSNQHLRNIALDALDQSICAVlgsekfqdsasrqrgtsdevesrhgdlrsiecAVISPLRVLYfstqstdvrAGTLKILLHVLERCgeklhyswPSILELLRSVADASEKDLITLGFQSLRFIMNdglssiptdcihecvdvtgayssqktELNISLTAVGLLWTTTDFIAKGLVHgiseekeaanqdlcsvpkqmdgekreektlsnlddqnhsigmvdrDKLLFAVFSLLKKlgaderpevRNSAIRTLFQTLGShgqklsesmwEDCLWnyvfpmldcashmaatsskdewqgkelgtrggKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVlshstkgnlpvayLNSVLDVYEYAlqkspnysdnaagKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTmithdnyeiefghvppVLRTILEIlpllspteQLCSMWLVLLREILQylprsdsplqkkedeeeppstsdnihdvhvrtkydkpngtapttpkdasalsessgsvtaaipnhlfaeKLIPVVVDLFLkapavekciiFPEIIQNLGrcmttrrdnpdssLWRLAVEGFNHILVDDVTKLAANFWQdmkisrparLRVWKEVADVYEIFLVGYcgralpsnslsAVALSGADESLEMSILDILGdkilkspidapFDVLQRLISTIDRcasrtcslpvetvelmpahcskFSLACLHKlfslsssdneasKWNLTRAEVSKISITVLMGRCEYILNRFlidendlgernfpaARLEEIIFILQELARlkihpdtasalplhpvlksglamdensdkrphllvlFPSFCELVISREARVRELVQVLLRLITKELALEKASMAGGR

MALMAVLESDLRALSAEARRRYPAVKDGAEHAILklrslsspselAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAESlpmgkfgsgahitrtnsvtgdVSRSINHSESLehefasegpslrrETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSlrtnvenegetgepyfrRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLfqnfdmnpkNTNVVEGMVKALARVVSSVQFQETSEESLSAVAGMFSSKAKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEavdvgevlesprcdydplpKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVlqspgskrseslvdqkdnivLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHsphattqevstaSSKLARESSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIgtsssfgptssQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGsekfqdsasrqrgtsdevesrhgdlrsiECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEekeaanqdlcsvpkqmdgekreektlsnlddqnhsigmvdRDKLLFAVFSLLKklgaderpevRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSrntaqkqwDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLprsdsplqkkedeeeppstsdnihdvhvrTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDmkisrparlrvWKEVADVYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVLLRLITkelalekasmaggr

MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQFQETSEESLSAVAGMFSSKAKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLESPRCDYDPLPKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVSTASSKLARESSGQYSDFNVLSSLNSQLFESSALMHISAVKsllsalhqlshqCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVADVYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISrearvrelvqvllrlITKELALEKASMAGGR

************************************************EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLEN******VRNTAAATFRQAVALIFDHVVRAESLPMGKFGS******************************************AGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF*********AVAGMFSSKAKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLESPRCDYDPLPKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINI***************************NIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAI*****************************VL**LNSQLFESSALMHISAVKSLLSALHQLSHQCMIGT***********IGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLG************************LRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGI*************************************IGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAA***********LGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYL********************************************************TAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVADVYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSKFSLACLHKLFSLSS***EASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSG**********PHLLVLFPSFCELVISREARVRELVQVLLRLITKELAL*********

*ALMAVLESDLRA****************EHAILK*************EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLE************AATFRQAVALIFDHVV***************************************************LTKAGKLGLRLLEDLTALA***********TLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSS**********************KGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAV**************PLPKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINI****************************IVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRA********************************************LMHISAVKSLLSALHQLSH*********************SFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIA*************************************LDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASH***************GTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHS******VAYLNSVLDVYEYALQKSPNY**********EILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTM************VPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPLQ***********SDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFW**MKISRPARLRVWKEVADVYEIFLVGYCGRAL****LSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCS******ELMPAHCSKFSLACLHKLFSL***************EVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLK****************************PHLLVLFPSFCELVISREARVRELVQVLLRLITKELA**********

MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINH****************RETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVS***********LSAVAGMFSSKAKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLESPRCDYDPLPKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESD*****************VDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPH********************YSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTS*********KIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEK********************DLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPK***********LSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDS***************DNIHDVHVRTKYDKPNG******************VTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVADVYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVLLRLITKELALE********

MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAES*********************************************ETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQFQ*****************AKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLES*******LPKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIP**************************NIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPH*********************SDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGL****************************************SIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCAS**********************AVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVADVYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSKFSLACLHKLFSLSSSDNEAS*WNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVLLRLITKELALEKASMA***

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1653	2.2.26 [Sep-21-2011]
Q9VLT1		1684	Protein MON2 homolog OS=D	yes	no	0.624	0.612	0.268	1e-105
Q6GP04		1721	Protein MON2 homolog OS=X	N/A	no	0.632	0.607	0.274	1e-104
Q29L43		1701	Protein MON2 homolog OS=D	yes	no	0.637	0.619	0.264	1e-103
Q80TL7		1715	Protein MON2 homolog OS=M	yes	no	0.630	0.608	0.276	1e-101
Q7Z3U7		1718	Protein MON2 homolog OS=H	yes	no	0.353	0.339	0.293	2e-62
Q19338		1646	Monensin-resistant homolo	yes	no	0.281	0.282	0.252	3e-37
Q61SD1		1645	Protein MON2 homolog OS=C	N/A	no	0.281	0.282	0.252	1e-35
P48563		1636	Protein MON2 OS=Saccharom	yes	no	0.669	0.676	0.206	2e-30
F4IXW2		1739	Brefeldin A-inhibited gua	no	no	0.274	0.261	0.231	1e-26
Q09853		1616	Protein MON2 homolog OS=S	yes	no	0.392	0.401	0.220	4e-19

>sp\|Q9VLT1\|MON2_DROME Protein MON2 homolog OS=Drosophila melanogaster GN=mon2 PE=2 SV=4	Back alignment and function desciption

 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 329/1225 (26%), Positives = 560/1225 (45%), Gaps = 193/1225 (15%)

Query: 7    LESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE---LAQSEDILRIFLMACEVRT 63
            L++D + LS E +++YP +K+  E AI KL +  S  +         IL   +  CE + 
Sbjct: 21   LQADFKTLSLETKKKYPQIKEACEEAISKLCTAGSSQQNSVYYTVNQILYPLVQGCETKD 80

Query: 64   VKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLH 123
            +K+    L  +Q+LI+   V       I + L    +   E V++    T+L+   + +H
Sbjct: 81   LKIIKFCLGMMQRLITQQVVDQKGALYITNALWTLMENNIEEVKVLQTVTLLLTTNTVVH 140

Query: 124  PENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAESLPMGKFGSG 183
                D +A+AL +C RL  +   + ++ NTA AT RQ V+L+F+ V              
Sbjct: 141  ---GDTLAKALVLCFRL--HYAKNPTIVNTAGATIRQLVSLVFERVY------------- 182

Query: 184  AHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLEDLTALAAGG 243
                    +  D   S+   +S       EG +   +T      L   L +DL  L    
Sbjct: 183  --------LEKDSVSSLQQQQSSGSPAEGEGGNQDVQTFASDAFL---LFQDLVQLVNAD 231

Query: 244  SASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENE 302
               WL  +  + RTF L++LE +L+N  ++F     +  +L+ ++C+L++     NV++ 
Sbjct: 232  QPYWLLGMTEMTRTFGLELLEAVLTNFSAVFHESNDFRLLLKERVCALVIKLFSPNVKHR 291

Query: 303  G-----------ETGEPYF--RRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLP 349
                           +PYF     +LR VA +I+ Y + L+TECE+FLS+++K    D P
Sbjct: 292  QLPAPSNGNAPVPAEKPYFPISMRLLRLVAILIQKYHTILVTECEIFLSLIIKFLDPDKP 351

Query: 350  LWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVV------SSVQF 403
             W R L LE++      +  +    +++D+    TN+V  M+ A+   +      +S   
Sbjct: 352  AWQRALALEVIHKLVTRSSLIAFFCKSYDLKNHATNIVHDMIAAMGSYIRYSLINASAML 411

Query: 404  ---QETSEESLSAVAG------MFS--------------SKAKGIEWILDNDASNAAVLV 440
               Q     SL+A++G      MF               SKA  +E +   DASN     
Sbjct: 412  NGQQNGVANSLTAMSGSNQCGFMFRGAYLPLVATYAPGVSKAVYLEMLDKIDASN----- 466

Query: 441  ASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLE-SPRC--DYDPLPKCMGETAVLCI 497
                      I    G+    A L D    +G V++ +P     ++       E   LC+
Sbjct: 467  ----------IPDSYGISVGHAILLDMTRSIGGVIQRTPELHPSHNTAVITEEEHKPLCL 516

Query: 498  SMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCK- 556
             +V+S W  +L A   ++  S  EA    ILK  Q +   CG+L  ++P ++F+ ++C+ 
Sbjct: 517  QLVNSSWSALLSAFIPLVETSIDEATTENILKAMQNYAALCGMLEQLQPRDAFIMAMCRA 576

Query: 557  -----FTINIPNESDRRSAVLQSPGSKRSESLVDQKDN---------------------- 589
                 + ++I   + +    L+      S+ L  Q  N                      
Sbjct: 577  SFPPHYAMSIFANTTQSDGDLRCHTRSGSQDLSSQFINSCSGDAGDFRPQIVAVGTPLPS 636

Query: 590  -----------IVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHAT 638
                       ++LT KN+Q +R +  +AH    +LG SW +VL+TL  L   +    +T
Sbjct: 637  ASLPHSVMQAPVMLTNKNLQCMRAILFLAHNNGGILGTSWHIVLQTLQHLVWILGLKPST 696

Query: 639  TQEVSTASSKLARES-----SGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLS 693
               +  A  K A E+     +   +D  VLS + SQLFESS  +   A+  L+ AL +LS
Sbjct: 697  GGSLQ-AMPKPAVEANVGIQTAVMADLPVLSQMLSQLFESSQYLDDVALHHLIDALCKLS 755

Query: 694  HQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNSNQ 753
            H+ M    ++  P+         F+V +++   + N+ R++ LW  +  H LE+  + + 
Sbjct: 756  HEAMELAYANREPSL--------FAVAKLLETGLVNMPRIKVLWRPLTNHLLEVCQHRHI 807

Query: 754  HLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 813
             +R   ++A+   + + L   +F+     +                ++  ++SPL  L  
Sbjct: 808  RMREWGVEAITYLVKSAL---QFKHKTPLKENME------------LQTMLLSPLSELS- 851

Query: 814  STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM 873
            +    DVR   L  +L +L   GE L + WP+I+E++ +V +   + LI   FQ L+ ++
Sbjct: 852  TVLHADVRQRQLDCVLQILNTAGEILSFGWPAIIEIIGAVNEHHGEPLIRTAFQCLQLVI 911

Query: 874  NDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEA 933
             D L+ +P  C+  C+     + SQ  ELNISLTA+GL+W  +DF  +            
Sbjct: 912  TDFLTVMPWRCLPLCISTAAKFGSQTQELNISLTAIGLMWNISDFFNQ------------ 959

Query: 934  ANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVR 993
             NQD     K M  + ++   +S L D   ++ M   DKL   +++ L +L  D RP VR
Sbjct: 960  -NQD-----KLMSTQLQD---VSILPDFPGTVKMPQFDKLWMCLYAKLGELCVDLRPAVR 1010

Query: 994  NSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGG 1053
             SA +TLF T+ +HG  L+   W+  +W  +FP+LD    +++++S +         +  
Sbjct: 1011 KSAGQTLFSTISAHGSLLNPPTWQALVWQVLFPLLDNVRALSSSASNE---------KVD 1061

Query: 1054 KAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNS 1113
             + ++LIHHSRNTAQKQW ET VL L G+ R+  +    L  L +F   W  +L F++N+
Sbjct: 1062 ASGNILIHHSRNTAQKQWAETQVLTLSGVCRVFNTKRELLQMLGDFERAWSLILEFIQNA 1121

Query: 1114 ILNGSKEVSLAAINCLQTTVLSHST 1138
             L+ + EVSLAA+  LQ  ++ H+T
Sbjct: 1122 ALSKNGEVSLAALKSLQ-EIMYHNT 1145

May be required for traffic between late Golgi and early endosomes.
Drosophila melanogaster (taxid: 7227)

>sp\|Q6GP04\|MON2_XENLA Protein MON2 homolog OS=Xenopus laevis GN=mon2 PE=2 SV=1	Back alignment and function description

>sp\|Q29L43\|MON2_DROPS Protein MON2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=mon2 PE=3 SV=2	Back alignment and function description

>sp\|Q80TL7\|MON2_MOUSE Protein MON2 homolog OS=Mus musculus GN=Mon2 PE=2 SV=2	Back alignment and function description

>sp\|Q7Z3U7\|MON2_HUMAN Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=2	Back alignment and function description

>sp\|Q19338\|MON2_CAEEL Monensin-resistant homolog 2 OS=Caenorhabditis elegans GN=mon-2 PE=3 SV=2	Back alignment and function description

>sp\|Q61SD1\|MON2_CAEBR Protein MON2 homolog OS=Caenorhabditis briggsae GN=CBG06228 PE=3 SV=1	Back alignment and function description

>sp\|P48563\|MON2_YEAST Protein MON2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MON2 PE=1 SV=1	Back alignment and function description

>sp\|F4IXW2\|BIG5_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana GN=BIG5 PE=1 SV=2	Back alignment and function description

>sp\|Q09853\|MON2_SCHPO Protein MON2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mon2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1653
359487909		1628	PREDICTED: protein MON2 homolog [Vitis v	0.978	0.993	0.801	0.0
298204915		1679	unnamed protein product [Vitis vinifera]	0.973	0.958	0.767	0.0
356535141		1643	PREDICTED: protein MON2 homolog isoform	0.977	0.982	0.766	0.0
356574904		1644	PREDICTED: protein MON2 homolog [Glycine	0.982	0.987	0.768	0.0
255542394		1591	guanine nucleotide-exchange, putative [R	0.954	0.991	0.753	0.0
356535139		1589	PREDICTED: protein MON2 homolog isoform	0.953	0.991	0.741	0.0
224125556		1638	predicted protein [Populus trichocarpa]	0.946	0.955	0.718	0.0
449435760		1589	PREDICTED: LOW QUALITY PROTEIN: protein	0.954	0.993	0.716	0.0
334187989		1630	armadillo/beta-catenin-like repeat-conta	0.976	0.990	0.717	0.0
334187991		1658	armadillo/beta-catenin-like repeat-conta	0.975	0.972	0.717	0.0

>gi\|359487909\|ref\|XP_003633673.1\| PREDICTED: protein MON2 homolog [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2637 bits (6834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1324/1651 (80%), Positives = 1454/1651 (88%), Gaps = 33/1651 (1%)

Query: 1    MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACE 60
            MA MAVLESDLRALSAEARRRYPAVKDGAEH ILKLRSLSSPSE+A +EDILRIFLMACE
Sbjct: 1    MAFMAVLESDLRALSAEARRRYPAVKDGAEHGILKLRSLSSPSEIAHNEDILRIFLMACE 60

Query: 61   VRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQS 120
            VR VKLSVIGLSC+QKLISHDAVAPSALKEI S LK+HA+M DESVQLKTLQTILII+QS
Sbjct: 61   VRNVKLSVIGLSCLQKLISHDAVAPSALKEILSTLKDHAEMADESVQLKTLQTILIIYQS 120

Query: 121  RLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAESLPMGKF 180
            RLHPENEDNMAQ LGICLRLLENNRSSDSVRNTAAATFRQAVAL+FDH+V AESLP+GKF
Sbjct: 121  RLHPENEDNMAQGLGICLRLLENNRSSDSVRNTAAATFRQAVALVFDHMVCAESLPLGKF 180

Query: 181  GSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLEDLTALA 240
            GSG +I+RT+SVTGD++R+IN SESLE+EF S  PSL RETLTKAGKLGLRLLEDLTALA
Sbjct: 181  GSGGYISRTSSVTGDINRNINRSESLEYEFISGRPSLMRETLTKAGKLGLRLLEDLTALA 240

Query: 241  AGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVE 300
            AGGSA WL VN++QRTF LDILEF+LSN+V +FR LVSYEQVLRHQICSLLMTSLRTN E
Sbjct: 241  AGGSAIWLRVNSIQRTFALDILEFVLSNYVVVFRTLVSYEQVLRHQICSLLMTSLRTNAE 300

Query: 301  NEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL 360
             EGE GEP FRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT LDLPLWHRILVLEIL
Sbjct: 301  VEGEAGEPSFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTSLDLPLWHRILVLEIL 360

Query: 361  RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQFQETSEESLSAVAGMFSS 420
            RGFCVEARTLR+LFQNFDM+PKNTNVVEGMVKALARVVSS+Q QETSEESL+AVAGMFSS
Sbjct: 361  RGFCVEARTLRILFQNFDMHPKNTNVVEGMVKALARVVSSLQVQETSEESLTAVAGMFSS 420

Query: 421  KAKGIEWILDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLESPRC 480
            KAKGIEW LDNDASNAAVLVASEAH+ITLA+EGLLGVVFTVATLTDEAVDVGE LESPRC
Sbjct: 421  KAKGIEWSLDNDASNAAVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDVGE-LESPRC 479

Query: 481  DYDPLPKCMGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGV 540
            D DP  KC G+TAVLCISMVDSLWLTILDALSLILSRSQGEAI+LEILKGYQAFTQACGV
Sbjct: 480  DSDPPAKCTGKTAVLCISMVDSLWLTILDALSLILSRSQGEAIVLEILKGYQAFTQACGV 539

Query: 541  LHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQAL 600
            L A+EPLNSFLASLCKFTINIP+E +RRS  LQSPGS+RSE LVDQ+D+IVLTPKNVQAL
Sbjct: 540  LRAIEPLNSFLASLCKFTINIPSEVERRSNALQSPGSRRSEPLVDQRDSIVLTPKNVQAL 599

Query: 601  RTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVSTASSKLARESSGQYSDF 660
            RTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHA TQEVS    KL RESSGQYSD 
Sbjct: 600  RTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHAATQEVSATVPKLTRESSGQYSDL 659

Query: 661  NVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVE 720
            +VLSSLNSQLFESSALMHISAVKSLL AL +LSHQC+ GTSS FG  S+QK+GSISFSVE
Sbjct: 660  SVLSSLNSQLFESSALMHISAVKSLLCALCELSHQCIPGTSSVFGQASNQKVGSISFSVE 719

Query: 721  RMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDS- 779
            RMISILVNNLHRVEPLWDQVV +FLEL ++SNQHLRN+ALDALDQSICAVLGS++FQ+  
Sbjct: 720  RMISILVNNLHRVEPLWDQVVTYFLELTNSSNQHLRNMALDALDQSICAVLGSDRFQEYI 779

Query: 780  ASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKL 839
             S+    S ++E+ + +LRS+ECAVISPLRVLYFS+Q TD R G LKILLHVLER GEKL
Sbjct: 780  PSKAHSASHDMETINSELRSLECAVISPLRVLYFSSQITDGRVGALKILLHVLERHGEKL 839

Query: 840  HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQK 899
            HYSWP ILE+LR VADASEKDL+TLGFQSLR IMNDGLS+IP DC+H C+DVTGAYS+QK
Sbjct: 840  HYSWPDILEMLRCVADASEKDLVTLGFQSLRVIMNDGLSTIPADCLHVCIDVTGAYSAQK 899

Query: 900  TELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLS--- 956
            TELNISLTA+GLLWTTTDFIAKGL+HG  +E E    D+ S PKQMDGE++EEKTL+   
Sbjct: 900  TELNISLTAIGLLWTTTDFIAKGLLHGPPKETEI--MDMSSTPKQMDGERKEEKTLNFAD 957

Query: 957  NLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMW 1016
              DDQ+  +  V+RD+LLF+VFSLL+KLGADERPEVRNSAIRTLFQTLG HGQKLS+SMW
Sbjct: 958  KFDDQSPLMNSVNRDRLLFSVFSLLQKLGADERPEVRNSAIRTLFQTLGGHGQKLSKSMW 1017

Query: 1017 EDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLV 1076
            EDCLWNYVFP+LD ASHMA TSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLV
Sbjct: 1018 EDCLWNYVFPILDRASHMAETSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLV 1077

Query: 1077 LVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSH 1136
            LVLGGIARLLRSFFPFL +LSNF TGWESLL FVKNSILNGSKEV+LAAINCLQTTV SH
Sbjct: 1078 LVLGGIARLLRSFFPFLRSLSNFSTGWESLLLFVKNSILNGSKEVALAAINCLQTTVNSH 1137

Query: 1137 STKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMY 1196
            S+KGNLP+ YL SVLDVYE  LQKSPNYSDNAA KVKQEILHGLGELYVQAQ MFDD  Y
Sbjct: 1138 SSKGNLPMPYLQSVLDVYETVLQKSPNYSDNAASKVKQEILHGLGELYVQAQMMFDDGTY 1197

Query: 1197 GQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREIL 1256
             QLLAII L V+Q+ + +DN+E+E+GHVPPV R +LEILPLL P   L +MWL+LLRE+L
Sbjct: 1198 TQLLAIIRLVVKQSKMNNDNFEVEYGHVPPVQRMMLEILPLLRPAVHLPAMWLLLLRELL 1257

Query: 1257 QYLPRSDSPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSE-SSGSV 1315
            QYLPR DSP   KED E+      N                      +AS+LS  S+ S+
Sbjct: 1258 QYLPRPDSP---KEDNEDGAEMMIN--------------------KTEASSLSAGSTTSI 1294

Query: 1316 TAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAV 1375
             A IP++LFAEKLIPV+VDLFL+APAVEK  IFPEI+Q L RCMTTRRD+PD +LWR AV
Sbjct: 1295 MAGIPSYLFAEKLIPVLVDLFLQAPAVEKYSIFPEIVQGLSRCMTTRRDSPDGTLWRSAV 1354

Query: 1376 EGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVADVYEIFLVGYCGRALPSNSLSAV 1435
            EGFN+I++DDV KLA NF  D  IS+PAR+RVWKEVADVYEIFLVGYCGRALPS SLS +
Sbjct: 1355 EGFNNIVLDDVNKLAVNFGPDPSISKPARMRVWKEVADVYEIFLVGYCGRALPSKSLSDM 1414

Query: 1436 ALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPA 1495
            AL  ADESLEM+IL+ILGDKIL++ IDAP D+LQRL+ T+D CASRTCSL +ETVELMP+
Sbjct: 1415 ALK-ADESLEMTILNILGDKILQAQIDAPVDILQRLVLTLDHCASRTCSLRIETVELMPS 1473

Query: 1496 HCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLG 1555
            HCS+FSL CL KLFSLSS + EA+ WN TR+EVSKISI VLM RCE ILNRFLIDEN+LG
Sbjct: 1474 HCSRFSLTCLQKLFSLSSYNGEANDWNSTRSEVSKISIMVLMTRCEQILNRFLIDENELG 1533

Query: 1556 ERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPS 1615
            ER  P ARLEEIIF+L+ELARL IHP+TAS LPLHP LK GLA +EN D+RPHLLVLF S
Sbjct: 1534 ERPLPTARLEEIIFVLKELARLVIHPETASVLPLHPYLKGGLA-EENHDRRPHLLVLFAS 1592

Query: 1616 FCELVISREARVRELVQVLLRLITKELALEK 1646
            FCELVISREARVRELVQVLLRLI  EL+L+K
Sbjct: 1593 FCELVISREARVRELVQVLLRLIAAELSLQK 1623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|298204915\|emb\|CBI34222.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356535141\|ref\|XP_003536107.1\| PREDICTED: protein MON2 homolog isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356574904\|ref\|XP_003555583.1\| PREDICTED: protein MON2 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|255542394\|ref\|XP_002512260.1\| guanine nucleotide-exchange, putative [Ricinus communis] gi\|223548221\|gb\|EEF49712.1\| guanine nucleotide-exchange, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356535139\|ref\|XP_003536106.1\| PREDICTED: protein MON2 homolog isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|224125556\|ref\|XP_002319615.1\| predicted protein [Populus trichocarpa] gi\|222857991\|gb\|EEE95538.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449435760\|ref\|XP_004135662.1\| PREDICTED: LOW QUALITY PROTEIN: protein MON2 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|334187989\|ref\|NP_198149.2\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi\|332006370\|gb\|AED93753.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334187991\|ref\|NP_001190414.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi\|332006371\|gb\|AED93754.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1653
UNIPROTKB\|Q0JIX0		1267	Os01g0772700 "Os01g0772700 pro	0.363	0.474	0.566	0.0
DICTYBASE\|DDB_G0271398		1874	mon2 "unknown" [Dictyostelium	0.240	0.211	0.290	2e-108
UNIPROTKB\|Q29L43		1701	mon2 "Protein MON2 homolog" [D	0.222	0.216	0.267	1.7e-90
FB\|FBgn0031985		1684	mon2 [Drosophila melanogaster	0.218	0.214	0.267	4.5e-90
UNIPROTKB\|Q7Z3U7		1718	MON2 "Protein MON2 homolog" [H	0.180	0.173	0.296	2.1e-78
MGI\|MGI:1914324		1715	Mon2 "MON2 homolog (yeast)" [M	0.180	0.173	0.299	1.2e-77
WB\|WBGene00008685		1646	mon-2 [Caenorhabditis elegans	0.156	0.156	0.25	2e-50
UNIPROTKB\|Q19338		1646	mon-2 "Monensin-resistant homo	0.156	0.156	0.25	2e-50
UNIPROTKB\|G4N2E3		1761	MGG_07913 "Uncharacterized pro	0.098	0.091	0.298	4.5e-47
ASPGD\|ASPL0000017942		1608	AN3643 [Emericella nidulans (t	0.081	0.083	0.297	7.4e-46

UNIPROTKB\|Q0JIX0 Os01g0772700 "Os01g0772700 protein" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 1696 (602.1 bits), Expect = 0., Sum P(6) = 0.
 Identities = 355/627 (56%), Positives = 452/627 (72%)

Query:   846 ILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNIS 905
             I +  ++V DASEKDLI+LGFQS+R IMN+GL++IP  C+ EC+ VTGAY +QKT++NIS
Sbjct:   522 IFKRKKAVTDASEKDLISLGFQSIRVIMNEGLATIPVQCLDECILVTGAYGTQKTDINIS 581

Query:   906 LTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDD--QNH 963
             LTAVGLLWT TDF+ KGL   IS+  E AN        +  G  +EE   S+  D  Q+ 
Sbjct:   582 LTAVGLLWTATDFVVKGL---ISKSAEKANG--MDEEAESGGTVKEEALSSSEKDIKQSP 636

Query:   964 SIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNY 1023
                +VD +KL F+VFS+L+KLGAD+RPEVRNSA+RTLFQTL +HGQKLS++MWEDCLW Y
Sbjct:   637 LKSVVDYNKLFFSVFSVLQKLGADDRPEVRNSAVRTLFQTLSTHGQKLSKTMWEDCLWIY 696

Query:  1024 VFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIA 1083
             VFPML+  SH+A+TSS+DEWQGKELGTR GKAVHMLIHHSRNTAQKQWDET+VLVLGGIA
Sbjct:   697 VFPMLERVSHLASTSSRDEWQGKELGTRAGKAVHMLIHHSRNTAQKQWDETIVLVLGGIA 756

Query:  1084 RLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLP 1143
             RLLRSFFPFL  LS F +GW  LL FVKN ILNGSKEV+LAAINCLQT V S+ +KGNL 
Sbjct:   757 RLLRSFFPFLQQLSKFSSGWVLLLDFVKNGILNGSKEVALAAINCLQTFVGSNCSKGNLE 816

Query:  1144 VAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAII 1203
              +Y+ SVLD+YE  LQ SPNY +++A KVKQE+L GLG+LYVQAQ +F+D MY +L+A++
Sbjct:   817 SSYVKSVLDIYELVLQTSPNYKNDSADKVKQEVLRGLGDLYVQAQSLFNDEMYLRLMAVM 876

Query:  1204 DLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSD 1263
              L ++ +M   D Y+ E G +P + R ILEI+P+L PT  L SMW  LL E+L YL   D
Sbjct:   877 HLMIKSSMNPTD-YDNELGSIPALQRGILEIIPMLRPTTMLSSMWSPLLLELLCYLNSHD 935

Query:  1264 SPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIP--- 1320
             +PLQK+  E         +H+     K D  NG A     + S L+ SS  +  A+    
Sbjct:   936 TPLQKQGKE---------MHE----QKSDAANG-ATHGFLERSHLNNSSTKMDNAVGCGW 981

Query:  1321 NHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNH 1380
               +F EKL+P+VV+LFL+AP  E+    PE+I+ LGRCM TRRDNP  +LWR++ E FN 
Sbjct:   982 GIMFIEKLVPIVVNLFLEAPQNERFNSSPEVIRCLGRCMNTRRDNPKGTLWRVSAECFNR 1041

Query:  1381 ILVDDVTKLAANFWQDMKISRPARLRVWKEVADVYEIFLVGYCGRALPSNSLSAVALSGA 1440
             +LVD+VT  +A+    M   + +R R WKEVADVYE FLVG CGR L S+  S  +++ A
Sbjct:  1042 VLVDEVTHDSADCKSGMSSYKFSRARFWKEVADVYETFLVGSCGRVLSSDVPSVDSVT-A 1100

Query:  1441 DESLEMSILDILGDKILKSPIDAPFDV 1467
             DE+LEM++L + GD +LK   DAP ++
Sbjct:  1101 DETLEMAVLTVFGDNVLKLQKDAPVEL 1127

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

DICTYBASE\|DDB_G0271398 mon2 "unknown" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29L43 mon2 "Protein MON2 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

FB\|FBgn0031985 mon2 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7Z3U7 MON2 "Protein MON2 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1914324 Mon2 "MON2 homolog (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

WB\|WBGene00008685 mon-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q19338 mon-2 "Monensin-resistant homolog 2" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N2E3 MGG_07913 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000017942 AN3643 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1653
pfam12783		166	pfam12783, Sec7_N, Guanine nucleotide exchange fac	4e-17
PLN03076		1780	PLN03076, PLN03076, ARF guanine nucleotide exchang	1e-13
pfam09324		86	pfam09324, DUF1981, Domain of unknown function (DU	5e-05
PLN03076		1780	PLN03076, PLN03076, ARF guanine nucleotide exchang	1e-04

>gnl\|CDD\|221768 pfam12783, Sec7_N, Guanine nucleotide exchange factor in Golgi transport N-terminal	Back alignment and domain information

 Score = 80.3 bits (199), Expect = 4e-17
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 229 GLRLLEDL-----TALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--- 280
              +  DL       L       +L      +   L+++E IL NH  +F    S     
Sbjct: 8   AFLVFRDLCKLSMKPLDEEEKPDFLSHEERSKLLSLELIESILENHGDVFL---SSPPEL 64

Query: 281 -QVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSM 339
             ++R  +C  L+ +L ++         P F R  LR    ++  + S L  E EVFLS+
Sbjct: 65  LDLIRQYLCPSLLRNLSSSSF-------PVFVR-SLRIFLLLLSKFRSHLKLEIEVFLSL 116

Query: 340 LVKVTFLDL---PLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVV 387
           L+    L+    P W + LVLE+LR  C + + L  ++ N+D +  + N+ 
Sbjct: 117 LILRI-LESDNSPFWQKELVLEVLRRLCRDPQLLVEIYLNYDCDEDSKNIF 166

The full-length Sec7 functions proximally in the secretory pathway as a protein binding scaffold for the coat protein complexes COPII-COPI. The COPII-COPI-protein switch is necessary for maturation of the vesicular-tubular cluster, VTC, intermediate compartments for Golgi compartment biogenesis. This N-terminal domain however does not appear to be binding either of the COP or the ARF. Length = 166

>gnl\|CDD\|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>gnl\|CDD\|204198 pfam09324, DUF1981, Domain of unknown function (DUF1981)	Back alignment and domain information

>gnl\|CDD\|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1653
KOG1848		1610	consensus Uncharacterized conserved protein [Funct	100.0
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	100.0
KOG0929		1514	consensus Guanine nucleotide exchange factor [Intr	100.0
KOG0928		1386	consensus Pattern-formation protein/guanine nucleo	100.0
PF12783		168	Sec7_N: Guanine nucleotide exchange factor in Golg	99.96
COG5307		1024	SEC7 domain proteins [General function prediction	99.87
PF09324		86	DUF1981: Domain of unknown function (DUF1981); Int	99.49
KOG1846		1777	consensus Uncharacterized conserved protein, conta	99.26
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	98.78
KOG1848		1610	consensus Uncharacterized conserved protein [Funct	98.55
KOG0930		395	consensus Guanine nucleotide exchange factor Cytoh	96.81
KOG0931		627	consensus Predicted guanine nucleotide exchange fa	94.89
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.52
PTZ00429		746	beta-adaptin; Provisional	84.24
cd00171		185	Sec7 Sec7 domain; Domain named after the S. cerevi	84.17
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	82.8
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	80.36
smart00222		187	Sec7 Sec7 domain. Domain named after the S. cerevi	80.18

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=6.9e-150  Score=1392.69  Aligned_cols=1496  Identities=31%  Similarity=0.365  Sum_probs=1143.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCc----ccC-chhHHHHHHHHhcCCCchhHHHHHHHHH
Q 000329            1 MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE----LAQ-SEDILRIFLMACEVRTVKLSVIGLSCIQ   75 (1653)
Q Consensus         1 m~~~~~L~~dL~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~----~~~-~~~~l~PfllaC~skn~kl~~iaL~~lq   75 (1653)
                      |+++++|.+||++|++||||||++||+|||+++.+||+..++++    +.. +++|+.||++||++||.|++.|||+|||
T Consensus         9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ   88 (1610)
T KOG1848|consen    9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ   88 (1610)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence            78999999999999999999999999999999999999998876    444 8999999999999999999999999999


Q ss_pred             HHHhcCCCCcchHHHH-HHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHH
Q 000329           76 KLISHDAVAPSALKEI-FSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTA  154 (1653)
Q Consensus        76 kLi~~~~i~~~~l~~I-l~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sk~~~vv~~TA  154 (1653)
                      ||+.|++++++...++ -+.||.+...  +.+|||+||++|.++++|...++|+.|.+++.+||+||. +|++ +|.|||
T Consensus        89 kL~~~dsleps~~aeildn~L~a~~qa--e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knk-vV~NaA  164 (1610)
T KOG1848|consen   89 KLGRHDSLEPSVTAEILDNNLWAAAQA--EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNK-VVFNAA  164 (1610)
T ss_pred             HHhccCCCCCcccHHHHHHHHHHHHHH--HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCc-ceechh
Confidence            9999999999654444 4555544333  578999999999999999999999999999999999976 5778 999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCCCcCCCCCcccccccccccccccCCCCcccccccCCCCcchhhhhhhhhHHHHHHHH
Q 000329          155 AATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLE  234 (1653)
Q Consensus       155 ~ATL~Qlv~~VF~rv~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~  234 (1653)
                      +||+||+|..|||||..+++.    .+..-+...+...++.                   +.-....+++..+|++..|.
T Consensus       165 aAtlrQlV~~vFdrv~ies~~----~d~~l~sl~~~s~t~s-------------------l~aa~~~~~~l~~dI~~~~~  221 (1610)
T KOG1848|consen  165 AATLRQLVLLVFDRVPIESDA----FDFILPSLTEASGTSS-------------------LEAALTALDPLQKDICVGFE  221 (1610)
T ss_pred             HHHHHHHHHHHHHhccccccc----ccccchhhhccCCccc-------------------hhhcccccchHHHhHhcchH
Confidence            999999999999999965431    1100000000000000                   00013456788899999999


Q ss_pred             HHHHhhcCCCCCcc-cccchhHHHHHHHHHHHHHhCchhhccCHHHH--HHHHHHHHHHHHHhhccccc-------C---
Q 000329          235 DLTALAAGGSASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--QVLRHQICSLLMTSLRTNVE-------N---  301 (1653)
Q Consensus       235 dLc~L~~~e~p~~l-~~~~l~k~~~LELlesvL~n~~~~F~~hpel~--~llr~~lc~lLi~~ls~n~~-------~---  301 (1653)
                      ++|.+..+..++|| .+.+.++..|+|++|+++.+....|..|.+|+  ++++..+||++.|++..++.       .   
T Consensus       222 ~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~  301 (1610)
T KOG1848|consen  222 NIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAV  301 (1610)
T ss_pred             HHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHH
Confidence            99999999999998 78899999999999999999999999999999  99999999999997754421       0   


Q ss_pred             -------------------CCCCCCchHH--HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 000329          302 -------------------EGETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL  360 (1653)
Q Consensus       302 -------------------~~~~~~~~F~--~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l~~~~~~w~r~L~LEvl  360 (1653)
                                         .+-.+...|+  .-..+.+......|-..+-.++++|++.+++.-+.+.+.|+|.+.+|++
T Consensus       302 ~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~  381 (1610)
T KOG1848|consen  302 VNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFL  381 (1610)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhh
Confidence                               0000111111  1123334444555667888999999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhccccc-------cCCcHHHHHHhhh-cccCcccccccccccC
Q 000329          361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-------QETSEESLSAVAG-MFSSKAKGIEWILDND  432 (1653)
Q Consensus       361 ~~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~~~-------~~~s~e~l~~~~~-~f~~k~kGi~~ll~~d  432 (1653)
                      ++++.+++.++.+++|+||++.+++++++.+..+.+++.-..+       ++...+..+.+.| .|..|.+||+|-.++|
T Consensus       382 ~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnd  461 (1610)
T KOG1848|consen  382 KSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDND  461 (1610)
T ss_pred             ccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCc
Confidence            9999999999999999999999999999999999998874321       1222222333334 7888889999987777


Q ss_pred             cCCCcccCcchhhhHHHHHHHHHHHHHHHHhhcccccccccccCCCcCCCCCCCCccC-chhHHHHHHHHHhhHHHHHHH
Q 000329          433 ASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLESPRCDYDPLPKCMG-ETAVLCISMVDSLWLTILDAL  511 (1653)
Q Consensus       433 ~~~~~~ll~~Ea~~I~~~~e~~a~~i~sv~~L~~~~~~~g~d~~~~~~~~~~~~~~~~-~~~~~~~~m~~~~W~~iLaal  511 (1653)
                      +....+++--+.-.+..+-|+++.+.++++.+...+.+.+. +..+.+.-.++..-.+ ...+..+.|+.+.|..+++++
T Consensus       462 s~stavl~~l~~~~~~li~e~~~ss~~avSt~~~~a~~v~~-l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildal  540 (1610)
T KOG1848|consen  462 SMSTAVLLQLSFSNKVLIPEGLYSSRMAVSTLLKRAQDVLH-LYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDAL  540 (1610)
T ss_pred             hHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHH-HhhhhhhhccCCccccceeehhHHHHHhhccccHHHHh
Confidence            65444443334444455556666666666655444333332 1111110011111111 134456678999999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccc-cccCCCCCc-----------
Q 000329          512 SLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR-----------  579 (1653)
Q Consensus       512 S~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~-~~~~p~s~~-----------  579 (1653)
                      +..+..+.|+.+.+.++.+++.++..||..+-+++..+++..||+|....+...+.... +.++|..++           
T Consensus       541 ks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfe  620 (1610)
T KOG1848|consen  541 KSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFE  620 (1610)
T ss_pred             hhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEe
Confidence            99999999999999999999999999999999999999999999999754322110000 001111000           


Q ss_pred             --------------c-cccccccCCccCChHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHhcC-CCCCCcccc
Q 000329          580 --------------S-ESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVS  643 (1653)
Q Consensus       580 --------------~-~~~~~~~~~~~l~~Kni~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~~-p~~~~~~~~  643 (1653)
                                    . -..+-+..++.++.||+++.|+++++++.+-+.++.+|..++.|...+++.... |..+.+...
T Consensus       621 tw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~  700 (1610)
T KOG1848|consen  621 TWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVI  700 (1610)
T ss_pred             eccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHH
Confidence                          0 001112356789999999999999999999999999999999999999998765 655554443


Q ss_pred             cccccccccc---c-CccchHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhH
Q 000329          644 TASSKLARES---S-GQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSV  719 (1653)
Q Consensus       644 ~~~p~~~~~~---~-~~~~dl~il~~i~~~LFesS~~l~~~al~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~l  719 (1653)
                      +..+..+.+.   + ..++|..+++++.+++|++++.++..++..+++||.+++++.+.....                 
T Consensus       701 t~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~-----------------  763 (1610)
T KOG1848|consen  701 TSSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETV-----------------  763 (1610)
T ss_pred             hcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhh-----------------
Confidence            3333333221   1 346788889999999999999999999999999999999986544321                 


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhH
Q 000329          720 ERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRS  799 (1653)
Q Consensus       720 ~kL~ev~~~N~~R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~  799 (1653)
                            +..+..|....|..+..|+.....++|+..+..|++.|++.+...+.+..+.....+.....+++..+...+..
T Consensus       764 ------~~~sslr~~~~~l~v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~e  837 (1610)
T KOG1848|consen  764 ------CSCSSLRFLDSKLDVSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFE  837 (1610)
T ss_pred             ------ccccccccccchhhhhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHh
Confidence                  12334566777777777777777777777777777777777776666554443223332223333222223333


Q ss_pred             HHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhc---cchhHHHHHHHHHHHHHhcc
Q 000329          800 IECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDG  876 (1653)
Q Consensus       800 lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~---~~~~lv~~aF~~LqlI~~df  876 (1653)
                      -+.+++..+...+..++..|+|...++|+.+|+|++|+.+-+||..||++|+++++.   +++++|+.||++|++|++||
T Consensus       838 s~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf  917 (1610)
T KOG1848|consen  838 SLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF  917 (1610)
T ss_pred             hhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc
Confidence            344666666666788899999999999999999999999999999999999988763   58899999999999999999


Q ss_pred             CCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcc
Q 000329          877 LSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLS  956 (1653)
Q Consensus       877 L~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~  956 (1653)
                      |++||.+|+..|||++..|++|+.|+||||||||+||+++||+++++.  +.-++.+..+            ..|+..++
T Consensus       918 LqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~--S~sed~~~~~------------~~e~~~ss  983 (1610)
T KOG1848|consen  918 LQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMF--STSEDSCAYN------------SVEDLYSS  983 (1610)
T ss_pred             hhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhh--ccchhhhhhc------------chhhhccc
Confidence            999999999999999999999999999999999999999999997422  1111111110            01122221


Q ss_pred             cccccCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhc
Q 000329          957 NLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAA 1036 (1653)
Q Consensus       957 l~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~ 1036 (1653)
                      .      +.+-..++.+|+.||..|+++|.|+|+||||||+||||||+.+||+.|++.+|+.|+|+|++|||+...... 
T Consensus       984 ~------~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~- 1056 (1610)
T KOG1848|consen  984 M------KSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN- 1056 (1610)
T ss_pred             c------cchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc-
Confidence            1      112245689999999999999999999999999999999999999999999999999999999999886432 


Q ss_pred             cCCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcC
Q 000329         1037 TSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILN 1116 (1653)
Q Consensus      1037 ~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~ 1116 (1653)
                         .+||+++++                   ||||.||.+++++|++|+|..||..|..+++|.+.|+.+|+|+.++...
T Consensus      1057 ---~~ewngkei-------------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~ 1114 (1610)
T KOG1848|consen 1057 ---VSEWNGKEI-------------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSD 1114 (1610)
T ss_pred             ---hhhhcchhH-------------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence               356777663                   5999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHhhhcCCCCCChh---hHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHH--HHHhhC
Q 000329         1117 GSKEVSLAAINCLQTTVLSHSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMF 1191 (1653)
Q Consensus      1117 ~~~els~a~~~~L~~lL~~~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~--~~~~~~ 1191 (1653)
                      .+.+++.++++|||+++......++++-.   ....++..|+.+++.++.+..+...++.||.+++|+..|+  .+++.+
T Consensus      1115 ~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~ 1194 (1610)
T KOG1848|consen 1115 ISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNF 1194 (1610)
T ss_pred             CChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcch
Confidence            99999999999999999999999988776   5566777888777777666666678899999999998888  455677


Q ss_pred             CHHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhccccCCCccchhhHHHHHHHHHccCCCCCCCC--CCC
Q 000329         1192 DDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKK 1269 (1653)
Q Consensus      1192 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~ 1269 (1653)
                      ..+.++..+..++.++.||.++.  +..|... ||+|.+|++.++.+-+++ ...+|..++.....+.+.+|.-.  ++.
T Consensus      1195 ~~e~~~~slll~~kai~yp~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~ 1270 (1610)
T KOG1848|consen 1195 GIEEIKDSLLLVRKAIFYPESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKK 1270 (1610)
T ss_pred             hHHHHHHHHHHhhhccccCCCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhc
Confidence            78899999999999999998776  8888766 889999999999998843 45666677777677776665322  111


Q ss_pred             CCCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhHhHHHHHHhhhcchhhhhchhH
Q 000329         1270 EDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFP 1349 (1653)
Q Consensus      1270 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 1349 (1653)
                      . +++.            +..-.++-|...+    +         ..-...+.-++++.++-....+++++.+.++--++
T Consensus      1271 ~-~~g~------------~~~e~~~das~et----l---------~~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~ 1324 (1610)
T KOG1848|consen 1271 L-GPGL------------PKEEKTIDASLET----L---------ICLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFL 1324 (1610)
T ss_pred             c-CCCC------------chhhhcccchhhh----h---------HHhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhH
Confidence            0 0000            0000000000000    0         00011233388888888877788888887777666


Q ss_pred             HHHHhhccccccc-CCCCCCcchHHHHHHHHHHHHHhhHhHhhh-----hcccccCChHHHHHhHHHHHHHhhhhhcccC
Q 000329         1350 EIIQNLGRCMTTR-RDNPDSSLWRLAVEGFNHILVDDVTKLAAN-----FWQDMKISRPARLRVWKEVADVYEIFLVGYC 1423 (1653)
Q Consensus      1350 ~i~~~l~~~~~~k-~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~-----~~~~~~~~~~~~~~~W~~v~~~~~~~l~~~~ 1423 (1653)
                      +...-+.+++-+. +++|+.|+|++|..+|++..-.+.......     ....+.+...+...+|++..|++++++.++|
T Consensus      1325 ev~~rlkr~~~t~~r~npe~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~c 1404 (1610)
T KOG1848|consen 1325 EVPMRLKRRCPTASRVNPELPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLC 1404 (1610)
T ss_pred             HHHHHHHHHcccccccCCCCceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhc
Confidence            6666666554444 888999999999999999887775543322     0000112234556789999999999999998


Q ss_pred             C-C--CCCCCCCChhhccccchhhchHHHHHhhhhccCCCCCCChHhhhhhHhhhhhcccCCCCCCccccccCccchhh-
Q 000329         1424 G-R--ALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK- 1499 (1653)
Q Consensus      1424 ~-~--~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~~~~r~r- 1499 (1653)
                      + +  +..+..+++.... .+|.+++++++.+++.++.+..|.|.+.++|+++++++++.| ++.++.+.+..|+|..| 
T Consensus      1405 d~e~~~~ksl~l~a~~~l-~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf 1482 (1610)
T KOG1848|consen 1405 DFENSSLKSLHLLAKPHL-QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRF 1482 (1610)
T ss_pred             ccccchhhhhhhccchhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhH
Confidence            8 3  2344556667888 999999999999999999999999999999999999999988 77777777777777666 


Q ss_pred             -hHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHHHHHHHhhcc
Q 000329         1500 -FSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLK 1578 (1653)
Q Consensus      1500 -~a~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~P~~r~~El~~vL~~l~~L~ 1578 (1653)
                       .+|.||+.||+....     ..+..|..+++++.|+|..||..+|++|++||...|..|+|+.|..||+++|++|..|.
T Consensus      1483 ~la~~Cf~~ll~ds~s-----~~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~ 1557 (1610)
T KOG1848|consen 1483 RLAVDCFSILLDDSNS-----SYENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLP 1557 (1610)
T ss_pred             HHHHHHHHHHHHhcch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHh
Confidence             566699999987753     12348999999999999999999999999999999999999999999999999999998


Q ss_pred             cCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheecchhHHHHHHHHH--HHHHhh
Q 000329         1579 IHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVL--LRLITK 1640 (1653)
Q Consensus      1579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~~~~~v~~ll~~~--l~~vg~ 1640 (1653)
                      ...      +.+|.+      . +..++.||..|+|.+|+.++++.+++....|.+  .+.+..
T Consensus      1558 ~~L------~~np~l------~-n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL~~i~~~~t 1608 (1610)
T KOG1848|consen 1558 SLL------YSNPIL------Y-NLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVLNAILGFTT 1608 (1610)
T ss_pred             hcc------ccCchh------h-hHHHHHHHHhccHHHHhhhhhhhcccHHHHHHHHHHHhhhc
Confidence            883      122221      1 267899999999999999987777766555543  444433

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal	Back alignment and domain information

>COG5307 SEC7 domain proteins [General function prediction only]	Back alignment and domain information

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins	Back alignment and domain information

>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>cd00171 Sec7 Sec7 domain; Domain named after the S	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>smart00222 Sec7 Sec7 domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1653
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 77.2 bits (189), Expect = 4e-14
 Identities = 105/761 (13%), Positives = 209/761 (27%), Gaps = 286/761 (37%)

Query: 540  VLHAVEPLNSFLASL-CKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQ 598
            +L   E   +F+ +  CK         D   ++L            ++ D+I+++   V 
Sbjct: 21   ILSVFED--AFVDNFDCKDV------QDMPKSILSK----------EEIDHIIMSKDAVS 62

Query: 599  ALRTLF--------NIAHR-LHNVLGPSWVLVLETLAALDRAIHSPHATTQEVSTASSKL 649
                LF         +  + +  VL  ++  ++  +    R    P   T+       +L
Sbjct: 63   GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRL 119

Query: 650  ARESSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQC------MIGTSSS 703
              ++   ++ +NV                +     L  AL +L          ++G    
Sbjct: 120  YNDNQ-VFAKYNVSR--------------LQPYLKLRQALLELRPAKNVLIDGVLG---- 160

Query: 704  FGPTS-------SQKIGS--------ISF----SVERMISILVNNLHRVEPLWDQVVGHF 744
             G T        S K+          ++     S E ++ +L   L++++P W     H 
Sbjct: 161  SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 745  LELADNSN-------------QH------LRNI----ALDALDQSICAVLGSEKFQDSAS 781
              +    +              +      L N+    A +A + S C +L         +
Sbjct: 221  SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKIL-------LTT 272

Query: 782  RQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAG-----TLKILLHVLERCG 836
            R +  +D + +      S++                              +LL  L+   
Sbjct: 273  RFKQVTDFLSAATTTHISLD-----------------HHSMTLTPDEVKSLLLKYLDCRP 315

Query: 837  EKLHYSWP----SILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 892
            + L    P    +      S+   S +D +   + + + +  D L++I    I   ++V 
Sbjct: 316  QDL----PREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTI----IESSLNVL 366

Query: 893  GAYSSQK--TEL-------NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPK 943
                 +K    L       +I    + L+W             I  +       L     
Sbjct: 367  EPAEYRKMFDRLSVFPPSAHIPTILLSLIWF----------DVIKSDVMVVVNKLHK--- 413

Query: 944  QMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQT 1003
                      +L     +  +I +            L  KL  +    +  S +      
Sbjct: 414  ---------YSLVEKQPKESTISIPSIY------LELKVKL--ENEYALHRSIVDHYNIP 456

Query: 1004 LGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHS 1063
                   L    + D    Y +      SH+                          HH 
Sbjct: 457  KTFDSDDLIPP-YLD---QYFY------SHIG-------------------------HHL 481

Query: 1064 RNTAQKQWDETLVLVLGGIARLLRSFFP--FLANLSNFWTGWESLLHFVKNSILNGSKEV 1121
            +N    +                 + F   FL    +F         F++  I +     
Sbjct: 482  KNIEHPE---------------RMTLFRMVFL----DF--------RFLEQKIRHD---- 510

Query: 1122 SLAAINCLQTTVLSHSTKGNLPVAYLNSVLDV--YE-YALQKSPNYSDNAAGKVK--QEI 1176
                           ST  N   + LN++  +  Y+ Y     P Y       V    + 
Sbjct: 511  ---------------STAWNASGSILNTLQQLKFYKPYICDNDPKYE----RLVNAILDF 551

Query: 1177 LHGLGE-LY-------VQAQKMFDDRMYGQLLAIIDLAVRQ 1209
            L  + E L        ++   M +D       AI + A +Q
Sbjct: 552  LPKIEENLICSKYTDLLRIALMAEDE------AIFEEAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1653
d1r8se_		187	Exchange factor ARNO {Human (Homo sapiens) [TaxId:	97.31
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.28
d1ku1a_		211	ARF guanine-exchange factor 2, Gea2 {Baker's yeast	97.22
d1xsza1		197	RalF, N-terminal domain {Legionella pneumophila [T	96.18
d1b3ua_		588	Constant regulatory domain of protein phosphatase	95.63
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.83
d1b3ua_		588	Constant regulatory domain of protein phosphatase	93.58
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	86.16

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=4.7e-05  Score=46.43  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             CCCCHHHHHHHHHHHHHH------------------HHHHHHHHCCCCCC
Q ss_conf             686412048899999998------------------99999761111122
Q 000329          439 LVASEAHSITLAIEGLLG------------------VVFTVATLTDEAVD  470 (1653)
Q Consensus       439 ll~~Ea~~I~~~~e~la~------------------~i~sv~~L~~~~~~  470 (1653)
                      .+|||+|.|+|++|.|++                  ++|+++||+++..+
T Consensus        91 ~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~d~v~~l~~siimLnTdlhn  140 (187)
T d1r8se_          91 RLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHN  140 (187)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             18971899999999999999986988678877999999999999765118

PyMOL of d1r8se_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.075  Score=25.55  Aligned_cols=306  Identities=13%  Similarity=0.115  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCHH-HH
Q ss_conf             56999999999975079--9669999999999999998312001141101379971222000004677999721089-98
Q 000329          735 PLWDQVVGHFLELADNS--NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLR-VL  811 (1653)
Q Consensus       735 ~iW~~i~~hli~v~~~~--n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~-~L  811 (1653)
                      ..|+-+...+....++.  +..++..+..++..+.... ....+                    ..... .++..+. .+
T Consensus       123 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~--------------------~~~~~-~il~~~~~~l  180 (458)
T d1ibrb_         123 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQL--------------------QDKSN-EILTAIIQGM  180 (458)
T ss_dssp             TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGT--------------------GGGHH-HHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC-CCHHH--------------------HHHHH-HHHHHHHHHH
T ss_conf             12751057899998820321778888998888987631-41000--------------------23388-9999999986


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCCCCC-C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             50387478999999999999982498657-7-808999999561202654579999999999984149988831499999
Q 000329          812 YFSTQSTDVRAGTLKILLHVLERCGEKLH-Y-SWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECV  889 (1653)
Q Consensus       812 ~~~~~~~eIr~~iL~~L~~iL~~~g~~L~-s-gW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV  889 (1653)
                      .....+.++|...+.++..++........ . -=+.++.++.....+.+.++...+|+++..++..+...+.......+.
T Consensus       181 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~  260 (458)
T d1ibrb_         181 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF  260 (458)
T ss_dssp             STTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15456799999999999999886132456677777767668877259989999999999999998719999988877899


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             99999770688865069899999997999870467896046763210367886556750234421024555578777210
Q 000329          890 DVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVD  969 (1653)
Q Consensus       890 ~tL~~F~~q~~dlNISLtAi~llW~isD~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  969 (1653)
                      ..+... ....+.++...++.++-.+++.......    ...+. ... ........                 ......
T Consensus       261 ~~~~~~-~~~~~~~~~~~a~~~l~~i~~~~~~~~~----~~~~~-~~~-~~~~~~~~-----------------~~~~~~  316 (458)
T d1ibrb_         261 AITIEA-MKSDIDEVALQGIEFWSNVCDEEMDLAI----EASEA-AEQ-GRPPEHTS-----------------KFYAKG  316 (458)
T ss_dssp             HHHHHH-HHCSSHHHHHHHHHHHHHHHHHHHHHHH----HHCCT-TCS-SSCSSCCC-----------------CCHHHH
T ss_pred             HHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HHH-HHHHHHHH-----------------HHHHHH
T ss_conf             999998-4354599999999999998998899998----50367-876-41899999-----------------999998


Q ss_pred             HHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             24449999999987----30289379999999999999985039999889999999969988986253210377210012
Q 000329          970 RDKLLFAVFSLLKK----LGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQG 1045 (1653)
Q Consensus       970 ~~~LW~~LL~~L~~----L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~i~~~VLFPLld~i~~~~~~~~~~~~~~ 1045 (1653)
                      .....++.+.....    .-.|....+|..|..++-.+....|...    +     ..++|.+......           
T Consensus       317 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~----~-----~~l~~~i~~~l~s-----------  376 (458)
T d1ibrb_         317 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-----PHVLPFIKEHIKN-----------  376 (458)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH----H-----HHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH----H-----HHHHHHHHHHHCC-----------
T ss_conf             8998726677640001021011223399999999999987551755----6-----6789999998569-----------


Q ss_pred             CCCCCCCCCCCHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             334767886411111456633344299--999999999999998432210056753799999999999998089068999
Q 000329         1046 KELGTRGGKAVHMLIHHSRNTAQKQWD--ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSL 1123 (1653)
Q Consensus      1046 ~~~~~~~~~~~~~~~hhsr~t~~k~W~--ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~~~~~~~eis~ 1123 (1653)
                                             ..|.  +....++..++.   .-..     ..+......++.++..++...+..|-.
T Consensus       377 -----------------------~~~~~r~aal~~l~~i~~---~~~~-----~~~~~~l~~i~~~l~~~l~d~~~~VR~  425 (458)
T d1ibrb_         377 -----------------------PDWRYRDAAVMAFGCILE---GPEP-----SQLKPLVIQAMPTLIELMKDPSVVVRD  425 (458)
T ss_dssp             -----------------------SSHHHHHHHHHHHHHTSS---SSCT-----TTTCTTTTTHHHHHHHGGGCSCHHHHH
T ss_pred             -----------------------CCHHHHHHHHHHHHHHHH---HCCH-----HHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             -----------------------998999999999999997---5477-----678988999999999884899899999


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999986206
Q 000329         1124 AAINCLQTTVLSHS 1137 (1653)
Q Consensus      1124 a~~~~L~~lL~~~~ 1137 (1653)
                      ++..++..+.....
T Consensus       426 ~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         426 TAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999720

PyMOL of d1ibrb_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure