Citrus Sinensis ID: 000330
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1652 | ||||||
| 255575080 | 1707 | hypothetical protein RCOM_0464910 [Ricin | 0.955 | 0.924 | 0.496 | 0.0 | |
| 357503097 | 1723 | hypothetical protein MTR_7g024000 [Medic | 0.940 | 0.901 | 0.406 | 0.0 | |
| 296086267 | 1570 | unnamed protein product [Vitis vinifera] | 0.547 | 0.575 | 0.522 | 0.0 | |
| 297823849 | 1566 | binding protein [Arabidopsis lyrata subs | 0.880 | 0.929 | 0.412 | 0.0 | |
| 240254612 | 1577 | uncharacterized protein [Arabidopsis tha | 0.877 | 0.918 | 0.399 | 0.0 | |
| 3355487 | 1567 | unknown protein [Arabidopsis thaliana] | 0.871 | 0.918 | 0.394 | 0.0 | |
| 359486637 | 2115 | PREDICTED: uncharacterized protein LOC10 | 0.405 | 0.316 | 0.621 | 0.0 | |
| 224100939 | 645 | predicted protein [Populus trichocarpa] | 0.357 | 0.916 | 0.603 | 0.0 | |
| 449483951 | 646 | PREDICTED: uncharacterized protein LOC10 | 0.384 | 0.984 | 0.533 | 0.0 | |
| 77556192 | 1696 | expressed protein [Oryza sativa Japonica | 0.685 | 0.667 | 0.358 | 0.0 |
| >gi|255575080|ref|XP_002528445.1| hypothetical protein RCOM_0464910 [Ricinus communis] gi|223532121|gb|EEF33928.1| hypothetical protein RCOM_0464910 [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1477 bits (3825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1685 (49%), Positives = 1078/1685 (63%), Gaps = 107/1685 (6%)
Query: 9 NLSCTVDIQPRNTTQSNSLKSFEQNRVTFKSNTPGWFPSSGKNDNLVISFSDDDSGSDTE 68
N + +VD+Q R + Q N+ KSFE+NRV KS GW G N NLVISFSDDD+GS++E
Sbjct: 87 NPAKSVDVQSRLSLQPNNDKSFEKNRVPLKSANSGWHAPPGPNSNLVISFSDDDTGSESE 146
Query: 69 DYRHKTAFENKSNTTRVDGSGRPPTSS-AVKVKNLQQTARNVSKAIPKKLSPSRTL--TT 125
DY+ A E K T VD + RPP+S A K LQ TARNV+K +PKK S SRT T
Sbjct: 147 DYKSGKALEYKQKTAGVDSNQRPPSSLLAAKSNKLQLTARNVNKVMPKK-SLSRTFNSAT 205
Query: 126 TRNHGGANSWVSRPPSVDQRSRVRNFSIKTK-LGSLECG-DQ-VGLRNSKLQDLRQQIAL 182
T+ +GGA+S + SVDQ SRVRNF+ + L + E G DQ +G+ N+KLQDLR QIAL
Sbjct: 206 TKINGGAHSRGAGSSSVDQISRVRNFNTTNRNLSNQEYGSDQGLGMNNAKLQDLRLQIAL 265
Query: 183 RESELKLKAAQQNKDLVIDSCENY-------HLGR-----------LDQKEPDKKRLKVS 224
RE LKLKAA QNK+ S +Y H R L+ KEPD KRLK+
Sbjct: 266 RERVLKLKAAHQNKESASVSGRDYSFVNLAAHATRTSNATSVRARELETKEPDNKRLKIM 325
Query: 225 GSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSRIESEIVK-- 282
GS +L +D +Q+I A KST+P+KE +SL D + V R K P R ES IVK
Sbjct: 326 GST--QLASDRQQEIHAVKSTIPLKEQALRSNSLLDRDMVHRGLKGSPTRRTESSIVKSK 383
Query: 283 ------WDKQNVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAERIE-SD 335
D + + P+ + + R+ T L N+ SS LK +E +
Sbjct: 384 EQVDKRVDTSSESLPSGLKEGVNVNVNRIQTDRCNMQVEPLTNIKSSVLLKYTNSVELNQ 443
Query: 336 PASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGPSFNNVHQ--VNTASLGNFS 393
P + P SF + EQ++M E + I + G + N V Q ++ + N+
Sbjct: 444 PVKSGGHQPPGSFSKTTSGEQHLMSGGEDHEHILNGRRVGEALNKVCQASLDNGNPWNYF 503
Query: 394 GNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANA 453
G NVS ++NVD+ SL++MEE LDKELEEAQE R ICEIEER ALKAYRKAQRAL+EAN+
Sbjct: 504 GALNVSAHNNVDMNSLVEMEESLDKELEEAQEQRHICEIEERNALKAYRKAQRALVEANS 563
Query: 454 SCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQM 513
C +LY +REL SA FRS V++DS LLWS+ E +G + + + S N+ L P S+H
Sbjct: 564 RCAELYHKRELYSAHFRSLVLNDSTLLWSTRNREHVGIALNHTDNGSRNLELMPPSSHPE 623
Query: 514 QSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNAL 573
+ Y G NQ G+DS++QC +G + H NGQNLGSEPCSE DASTSE L K AL
Sbjct: 624 RPDYDGRNQPGFDSNIQCASGAPLRTPYMHANGQNLGSEPCSEPDASTSEPLHLNCKTAL 683
Query: 574 NGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVS 633
N S SN+ SAD++EE LD E+VQPN++ QQ+++ + GRQ + + N S
Sbjct: 684 NIGSSPSNDPNFSADDDEETSPLDHETVQPNYKIQQREESSVGRQKDSINQLNKISSDDC 743
Query: 634 SQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGS-VP 692
S D L LEATLRSELFARLG R SK+S S N++P+ E +ND GS++ Q SNGS +
Sbjct: 744 SPDSLTLEATLRSELFARLGRRNLSKNSSS-LNLDPADELGTENDNGSERTQTSNGSFLV 802
Query: 693 SSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHST 752
S E++Q+ D+GG D+ ER I P IQ++ +K E+ S H S
Sbjct: 803 SEEERNQEFDLGGNDQHERNISGVPVNIQNQ---KKNDDEYFSICHL-----------SA 848
Query: 753 SVLLSPP-ILRGAFGHLKSELCIALSNQSGNQHNHGRNFEI-EEVACVNSDKTQACYLIA 810
+++ SP +LR AFGH+K + + + + +E +N+++ IA
Sbjct: 849 TIIYSPNLVLRSAFGHMKDTFALTSTGFQSQKSERDDTCDCNDEAGSINTEEIDHGITIA 908
Query: 811 NSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRN--KN 868
N + K G + GS+TCN +DP WPLCMYELRGKCNND+CPWQHV+ F++ N K+
Sbjct: 909 NPMEESAKDVCGNDFGSFTCNFIVDPFWPLCMYELRGKCNNDQCPWQHVRDFSNGNVGKH 968
Query: 869 LHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARR 928
HD SDS+ CQ+G T+ Q+ CN GT L +LT PTYIVGLDILK+DS+ + SV+
Sbjct: 969 QHDTSDSSDCQVGLTLHQKKCNGGT-LPNSQCVLTAPTYIVGLDILKSDSHSFDSVVTWG 1027
Query: 929 HGLCWQKCLSVSLAISSIYPKDLPADLSLI--GDGRIECIGSWNRQSSFFRSRNGVLNKL 986
+G CWQKC S+ +A+S++ KDLPAD + DGRIE +W++Q S+F+ NKL
Sbjct: 1028 NGQCWQKCFSICIALSNLLQKDLPADEPFLHGSDGRIEVQKNWDKQLSYFQK-----NKL 1082
Query: 987 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT 1046
+L +ALS+LSRA+EADP SEILWITYL I+Y N
Sbjct: 1083 ----------FSHFFFLL-----------QALSVLSRAIEADPKSEILWITYLFIYYGNV 1121
Query: 1047 NSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1106
SV KDDMFSY+VKHN+ SY +WLMYINSRT L+ RL AY++AL+ LC SA + DEM+
Sbjct: 1122 KSVAKDDMFSYAVKHNDRSYGVWLMYINSRTRLDDRLVAYESALTALCHQLSAYEKDEMY 1181
Query: 1107 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1166
ASACILD+FLQM+ CMSGN EKAIQ+I L AT S+ H L LSDIL LTISDK
Sbjct: 1182 ASACILDMFLQMMDFLCMSGNVEKAIQKICGLFSVATNSDQCHCLLLSDILASLTISDKC 1241
Query: 1167 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1226
+FWVCCVYLV+YRKLP+AV+ EC+KEL AI+WP V L D++KQ A KLIEMA+N V+L
Sbjct: 1242 MFWVCCVYLVMYRKLPEAVVHKFECDKELLAIEWPCVHLLDEDKQMATKLIEMAMNFVKL 1301
Query: 1227 YSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL 1286
Y N ES+ E +LRS F + H C+A L+GLEC +LL++Y+KLYP+CLE VL+ R+
Sbjct: 1302 YVNSESVVNEASLRSLQYFGLCHTRCVAALHGLECCRSLLDEYMKLYPACLEYVLVSVRV 1361
Query: 1287 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWK 1346
Q D S GFEEAL WPK PGI CIWNQY+EYALQ G DFA + RWF+S
Sbjct: 1362 QMTD-----SEGFEEALRNWPKEAPGIHCIWNQYIEYALQKGGPDFAKRVTVRWFNSFSV 1416
Query: 1347 VQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1406
VQYSQ E D + SH+S E S + +F S+ N +D+MFGYLNLS+ +LL ND E
Sbjct: 1417 VQYSQKEKLDAIGTSSSHASLELASVENTDFLTSSSNHLDLMFGYLNLSIAKLLHNDQIE 1476
Query: 1407 ARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPY 1466
AR AID A KAAA F+HC+REHAM LL+N+S+ E A IS L +LN YLD AR+ P
Sbjct: 1477 ARNAIDKAFKAAAPPFFEHCLREHAMFLLMNDSQLNEDASISKCLNVLNGYLDDARAFPV 1536
Query: 1467 LKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVD 1526
+ L R+FIN IE+PR++QLI VNLVLEV YGPSLLP+NF + K+LVD
Sbjct: 1537 SEPLSRRFINKIEKPRVKQLI-------------VNLVLEVWYGPSLLPQNFRQPKELVD 1583
Query: 1527 FVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPE 1586
FVE I+EIVPSNYQLAFS KLL+K N D S+L+WAS +LV++IFHA+P+APE
Sbjct: 1584 FVEAILEIVPSNYQLAFSACKLLSKGE--NFIDVPSGSMLYWASITLVNSIFHAIPIAPE 1641
Query: 1587 YVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAARE 1646
YVWV+AAG L +I+ IE I ERF+++ALSVYPFSIKLW CYY+LSKT+G ++++AARE
Sbjct: 1642 YVWVDAAGFLDDIAGIELIYERFYRKALSVYPFSIKLWNCYYNLSKTRGHATSVLEAARE 1701
Query: 1647 KGIEL 1651
KGIEL
Sbjct: 1702 KGIEL 1706
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357503097|ref|XP_003621837.1| hypothetical protein MTR_7g024000 [Medicago truncatula] gi|355496852|gb|AES78055.1| hypothetical protein MTR_7g024000 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/1723 (40%), Positives = 980/1723 (56%), Gaps = 169/1723 (9%)
Query: 15 DIQPRNTTQSNSLKSF-EQNRVTFKSNTPGWFPSSGKNDNLVISFSDDDSGSDTEDYRHK 73
+IQ R Q S K ++N++ KS+ W + ++NLVIS D
Sbjct: 82 NIQTRTAIQPISRKIIIKKNQLPPKSSP--WTGHASDDNNLVIS---------FSDDDSG 130
Query: 74 TAFENKSNTTRVDGSGRPPTSSAVKVK--NLQQTARNVSKAIPKKLSPSRTLTT--TRNH 129
+ ENK +R++ + + P+SS LQ+ AR++ P K RT T+ T+N
Sbjct: 131 SDIENKGTDSRLERNNKRPSSSLQNSNKLQLQKNARSLHNETPIKFPSKRTFTSSVTKNP 190
Query: 130 G----GANSWVSRPPSVDQRSRVRNF-SIKTKLGSLECG-DQVGLRN-SKLQDLRQQIAL 182
GA SW S+ Q R RNF S L S ECG DQ + N +KLQDLR QIAL
Sbjct: 191 SSISKGAGSW-----SLGQGPRARNFKSTNKTLASQECGRDQGAVSNDNKLQDLRHQIAL 245
Query: 183 RESELKLKAAQQNKD--LVI-----DSCENYHL------GRLDQKEPDKKRLKVSGSYSH 229
RESELKLKA QQ K+ LV+ + H+ +L+ K PD+KR+K+ S+
Sbjct: 246 RESELKLKAVQQMKESALVLGRDPKNDTTRKHIPVSSGAAQLEPKGPDRKRMKIDTSHDA 305
Query: 230 RLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPRSRIESEIVKWDKQNVA 289
G+Q +P KS +P K+ Q+ NKVD +QK+IP R ES I+K ++
Sbjct: 306 PQAVGGQQ-VPVVKSILPSKDSLCGNIYPQERNKVDHNQKEIPLCRGESIIIKSQRETGN 364
Query: 290 NPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAERIESDPASTAAGCHPSSFL 349
+ + S SR + + T + + + F+++ S PAS+
Sbjct: 365 HLSNSVQNMPCRSREGDVNYDCNQTDKSSRLVDPAFIQS-----SMPASSVP-------- 411
Query: 350 SNATREQNVMENSEYTKAISGDKIDGPSFNNVHQVNTASLGNFSGNGNVSGNSNVDIQSL 409
N+ ++ A L +GN NVS +SN+D+QS
Sbjct: 412 -----------------------------TNLEALSNAVLMTDNGNANVSEHSNIDLQSF 442
Query: 410 LDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARF 469
+DMEEL+DK LEEAQEHR CEIEER A +AY KAQR+L+EANA C LY QRE+ SA+
Sbjct: 443 IDMEELIDK-LEEAQEHRHNCEIEERNAYRAYVKAQRSLLEANARCNDLYHQREVYSAKL 501
Query: 470 RSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSM 529
RS + S QH+ LG D + + PTS+ Q+ Y N +DS+
Sbjct: 502 RS------DFSLSLRQHQQLGIGLDYLPKLGYEI---PTSSCLRQAEY-NINNPSFDSND 551
Query: 530 QCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADE 589
Q IN + S H+NG NLGSEPC E DASTSE ++ +A +G+ +E+ S +E
Sbjct: 552 QGINNRHSDTSCHHKNGANLGSEPCIEPDASTSEPFSQRGNHAADGVYSPMDEVDTSDNE 611
Query: 590 EEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELF 649
EE S + EY++K Q ++ +QI D N S S QD LLLEATLRSELF
Sbjct: 612 NEEISLAGHTSNNLDAEYRRK-QDSKAKQIDLDTASNADYSTGSPQDSLLLEATLRSELF 670
Query: 650 ARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKP 709
ARLG R K + C N E + E A+N++GS+K ++ +G+VP ++ +D+ G ++
Sbjct: 671 ARLGKRA-KKSNIPCNNFE-TAEPGAENEVGSEKNRVHHGTVPLIN--AENNDLKGNERK 726
Query: 710 ERRIQEAPFQIQDKCLVEKGLLEFH-STYHSKGNKFPTTMNHSTSVLLSPP-ILRGAFGH 767
ER I +IQ + + + + S P+ + HST+ + PP I R AF
Sbjct: 727 ERNIHMDSDEIQSQQNIGANTVNTNCSAGLGDQGDMPSQVYHSTNPVNIPPLIFRSAFSE 786
Query: 768 LKSELCIALSNQSGNQH--NHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEM 825
L+ +L NQ NQ+ H + + + C++SD+ + L + I G E
Sbjct: 787 LREMSPFSL-NQLPNQNKSGHDNDGQSQNATCLSSDEAKRSMLAISMAVTI--GNSLSEE 843
Query: 826 GSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRN--KNLHDDSDSAGCQIGST 883
GSY C+ +DP WPLCMYELRGKCNNDECPWQH K + D N ++ H D+++ Q S
Sbjct: 844 GSYGCSPEVDPFWPLCMYELRGKCNNDECPWQHAKDYGDGNITQHQHTDTNNGDSQDRSP 903
Query: 884 IPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAI 943
+ +++CN TK++K H PTY+V LD+LKAD + Y+ + A R WQK S++LA
Sbjct: 904 LHEQNCNGVTKVTKYHKATILPTYLVSLDVLKADQFAYKPIAAHRIAQHWQKHFSITLAT 963
Query: 944 SSIYPKDLPAD--LSLIGDGRIECIGSWNRQSSFFRSRNGV------------------- 982
S++ D LS GD RIE G+W++Q SF + RNGV
Sbjct: 964 SNLLQNGSAEDGPLSHGGDERIEVRGTWSKQLSF-QWRNGVGAYKLEREREREREREATR 1022
Query: 983 -------------------------------LNKLKQVELSNEQCVEMALLILNQDANKL 1011
LN++KQ +EQ VEMALLILNQ+ NK+
Sbjct: 1023 ANLVLHYKGQLSSKDSCHLTHYWVLNSHIVFLNQIKQAMTDSEQAVEMALLILNQEINKM 1082
Query: 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1071
+G++KALS+LS+ALE +PTS ++WI Y LI+Y + K+DMF Y+VK EGSY LWLM
Sbjct: 1083 QGVRKALSVLSKALETNPTSVVIWIVYSLIYYGSFGPNEKEDMFLYAVKLYEGSYVLWLM 1142
Query: 1072 YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1131
YINSR L+ R+ AYD+A+S LCR ASA+ D+ SACILDLFLQM+ C CMS N E A
Sbjct: 1143 YINSRRKLDDRIAAYDSAISALCRHASAAPEDKTCESACILDLFLQMMDCLCMSRNVENA 1202
Query: 1132 IQRISRLLIPATGSND-RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE 1190
IQR S + PAT +D + L LSD+L CLT+SDK + WVCCVYLVIYRKLP A++Q E
Sbjct: 1203 IQR-SYGVFPATTKSDVPNLLSLSDLLNCLTVSDKCVLWVCCVYLVIYRKLPGAIVQNFE 1261
Query: 1191 CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1250
C K++ I+WP V L +DEK+RA+KL+E A + S ++E E +L+ A FA+NH+
Sbjct: 1262 CTKDILDIEWPIVSLSEDEKERAVKLMETAAEYIN--SRAFTMESEDDLKCAQHFALNHL 1319
Query: 1251 WCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGV 1310
L+ +EC+ +L ++Y+KLYP C+ELVL+ A++QK D G + + FE+ + +WPK V
Sbjct: 1320 RFRVALDRIECARSLFDRYVKLYPFCIELVLVSAQIQKQDLGVGNFMVFEDTISRWPKIV 1379
Query: 1311 PGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPEST 1370
PGIQCIWNQY+ A+ N R D A E+ RWFHS WKVQ +D S
Sbjct: 1380 PGIQCIWNQYIANAIHNQRMDLAKEITVRWFHSAWKVQDPPYGGTDATDDGNSCGLVGLG 1439
Query: 1371 STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1430
S + S S QMD+MFGYLNLS++ Q D EA +A++ A +R++
Sbjct: 1440 SKFVSDTSNSGHKQMDMMFGYLNLSIYHFFQEDKTEASIAVNKARDTVGFAGLDQYIRKY 1499
Query: 1431 AMLLLINESEPKEGAPISWQLKLLNSYLD-RARSLPYLKLLPRQFINNIERPRLQQLIDN 1489
M ++ + S EG P S ++L Y+D +++L + L R+F+++I++PR+Q LIDN
Sbjct: 1500 VMFMVCDASSLNEGDPESVVKRMLEVYMDGSSQALLAPRALTRKFLDSIKKPRVQNLIDN 1559
Query: 1490 LLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLL 1549
+L PVS D S++NL+L+ +G SLLP+ S K LVDFVE IME+VP N+QLA +V KLL
Sbjct: 1560 ILRPVSFDCSVLNLMLQSWFGSSLLPQTVSDPKLLVDFVERIMEVVPHNFQLAIAVCKLL 1619
Query: 1550 NKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERF 1609
+KD++ +D S+ FW+ S+LV+AI A+P+ PEYVWVEAA L + IE IS+RF
Sbjct: 1620 SKDYSS--SDLNSTSLQFWSCSTLVNAITGAIPIPPEYVWVEAAAFLQSAMGIEAISQRF 1677
Query: 1610 FKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD 1652
+K+ALSVYPFSI LWKCYY L + GD N+I++ A+E+GI LD
Sbjct: 1678 YKKALSVYPFSIMLWKCYYKLFLSNGDANSIIEEAKERGINLD 1720
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086267|emb|CBI31708.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1035 (52%), Positives = 664/1035 (64%), Gaps = 131/1035 (12%)
Query: 626 NNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQ 685
N K + S +D LLLEATLRSELFARLG+RT SK+SG +++EP+V++ ++++G DK Q
Sbjct: 659 NTKFATDSPEDSLLLEATLRSELFARLGVRTLSKNSGHDYDIEPAVDREVEDNVGRDKTQ 718
Query: 686 MSNGSVP-SSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVE-KGLLEFHSTYHSKGNK 743
M ++P S E++QQ D+GG +PE I E P +I +C + G EF T K +K
Sbjct: 719 MRMRNIPFSDAEKTQQLDLGGAGRPETSISEIPVEIDRQCYEKFSGNNEFQPTDDPK-DK 777
Query: 744 FPTTMNH--STSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNS 800
F H +TSV SPP +LR AFGH+K
Sbjct: 778 FSKREVHQSTTSVTFSPPFVLRSAFGHMK------------------------------- 806
Query: 801 DKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVK 860
LI +S D V+ G E GSYTCNLA+DP WPLCMYELRGKCNN+EC WQHVK
Sbjct: 807 ----VTSLITSSTLDTVRDGFG-EAGSYTCNLAVDPFWPLCMYELRGKCNNEECVWQHVK 861
Query: 861 YFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQ 920
+ + N N HD+SD+A +G L + +
Sbjct: 862 DYTNNNMNQHDESDNADWHLG--------------------------------LSSHQGK 889
Query: 921 YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLI--GDGRIECIGSWNRQSSFFRS 978
+++ + C QKC S LA+SS+ KD P D L DGR+E GSWNRQS + +
Sbjct: 890 FEAWCISQ---CGQKCFSTILAVSSLLQKDFPVDQPLYHGSDGRLEVHGSWNRQSLYIQP 946
Query: 979 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY 1038
RNGV+ L + S +EMALL+LNQ+ NK+EGMKKALS+LSRALEADPTS LWI Y
Sbjct: 947 RNGVVVCLLILFYS----LEMALLVLNQEVNKVEGMKKALSVLSRALEADPTSVALWIVY 1002
Query: 1039 LLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1098
LLI+YS+ ++GKDDMF Y++KH EGSY LWLM+INSR L+ RL AYD ALS LCR AS
Sbjct: 1003 LLIYYSSQKTIGKDDMFIYAIKHTEGSYELWLMFINSRAQLDERLVAYDTALSALCRHAS 1062
Query: 1099 ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT 1158
ASD D HASACILDLFLQM+ C CMS N KAIQRI LL AT S++ HSL LSDILT
Sbjct: 1063 ASDRDAKHASACILDLFLQMMGCLCMSRNIRKAIQRIYGLLPSATNSDEPHSLSLSDILT 1122
Query: 1159 CLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1218
CLTI+DK IFWVCCVYLVIYRKLPD ++Q ECEKE FAI WP V L DEKQ+A+KL+
Sbjct: 1123 CLTITDKCIFWVCCVYLVIYRKLPDDIVQRFECEKEFFAISWPSVCLRADEKQQALKLMG 1182
Query: 1219 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLE 1278
AVNSVE Y + ESL+ ET LRSA FA+NH+ C+ + LEC NLL+KY KLYPSCLE
Sbjct: 1183 TAVNSVESYFDNESLQSETTLRSAQLFALNHVRCVVAVESLECGRNLLDKYTKLYPSCLE 1242
Query: 1279 LVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMD 1338
LVL+ A+ QKHDFG L+ GFE+AL WPK PGIQCIW+QY EYAL+NG D A E+M
Sbjct: 1243 LVLISAQTQKHDFGGLNFGGFEDALSNWPKESPGIQCIWSQYAEYALRNGSFDVAKEIMS 1302
Query: 1339 RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR 1398
RW++SVWKVQ Q + D S S ES S+ + SV ++MD MFG LNLSL+R
Sbjct: 1303 RWYNSVWKVQCPQNDSLSGTDGDNSCCSLESALASNLDISVLGSSKMDAMFGLLNLSLYR 1362
Query: 1399 LLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYL 1458
L QND EAR+ ID +LK AA E+FKHCVREHAM +L +
Sbjct: 1363 LFQNDLTEARMIIDKSLKTAAPEYFKHCVREHAMFMLTDG-------------------- 1402
Query: 1459 DRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNF 1518
+QQLI N+LSP+SSDFSL+NLVLEV +G SLLP+
Sbjct: 1403 ------------------------VQQLISNMLSPMSSDFSLLNLVLEVWHGQSLLPQES 1438
Query: 1519 SKLKDLVDFVEGIMEIVPSNYQLAFSVFK-LLNKDHNPNITDAVPESVLFWASSSLVSAI 1577
SKLKDLVDFVE IMEI P NYQLA S K LL++ H+ A SVLFW SS L++AI
Sbjct: 1439 SKLKDLVDFVEAIMEISPCNYQLAMSACKQLLSRGHSSGDASA---SVLFWGSSLLINAI 1495
Query: 1578 FHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL 1637
A+PVAPE++WVEAAGIL N+ + +S F KRALS+YPFSI+LWK Y LSK G++
Sbjct: 1496 SQAIPVAPEFIWVEAAGILDNLMDNQVLSLNFHKRALSLYPFSIRLWKSYLMLSKITGNM 1555
Query: 1638 NTIVKAAREKGIELD 1652
+++V AA+EKGIELD
Sbjct: 1556 DSVVAAAKEKGIELD 1570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823849|ref|XP_002879807.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325646|gb|EFH56066.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/1625 (41%), Positives = 918/1625 (56%), Gaps = 170/1625 (10%)
Query: 45 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 104
FP+ G N NLVI+FSDDDSGS+++ R +T N + + G+ P T S K+K +Q
Sbjct: 95 FPARGNNSNLVINFSDDDSGSESDGNR-RTQTSNIQSKGTMSGNRNPSTFSQTKLKGPRQ 153
Query: 105 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQRSRVRNF--SIKTKLGSLEC 162
T ++AI KK P T+T +H A S VS S + +N S +T
Sbjct: 154 TD---NRAITKKPLP----TSTFSHA-ATSKVSNLSSAKEMKANKNIHTSERTVSKDTRL 205
Query: 163 GDQ-VGLRNSKLQDLRQQIALRESELKLKAAQQNKDLV---IDSCENYHL-----GRLDQ 213
+Q V N KLQDL+QQIALRESELKLKAAQ KD + I + +L+
Sbjct: 206 PEQIVNPNNIKLQDLKQQIALRESELKLKAAQPKKDAINPKISPARRVSIISDDTRQLEP 265
Query: 214 KEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKDIPR 273
EP KKRLKVSG + + TD R +PA+ + P+ P DI +
Sbjct: 266 NEPAKKRLKVSGIDTSQPVTDYR--VPAS-AAAPMDVP------------------DIRK 304
Query: 274 SRIESEIVKWDKQNVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAERIE 333
S + N N SC +S + PV+ + N +SS K+A +
Sbjct: 305 SLLPG----------VNANPSCKHLGSNSDEI-VPPVVSQHTVEGNTSSSVVQKSAGK-- 351
Query: 334 SDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDKIDGPSFNNVHQVNTASLGNFS 393
A C+ RE M+NS T D ++ + +N + L N
Sbjct: 352 -------ANCY------EGGRELETMKNSMETIRFFLDP-QIMTWRQLSCLNNSGLWNIP 397
Query: 394 GNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANA 453
GN G+S +D+ SL ++EE LDKELEEAQE +R+CEIEER ALK YRKAQR+LIEANA
Sbjct: 398 GNTTAPGHSQLDMLSLTNLEESLDKELEEAQERKRLCEIEERNALKVYRKAQRSLIEANA 457
Query: 454 SCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQM 513
C +LY +RE+ SA + S ++ DS LLW S E+ F + +GN+ LA T T
Sbjct: 458 RCAELYSKREILSAHYGSLLVRDSRLLWPSIHGESPETGFHFLNNSTGNIDLA-TKTDIA 516
Query: 514 QSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNAL 573
Q + N Y+S C G Q H +GQNLGSEP S+ ASTS+ LP +K
Sbjct: 517 QHTQLESNH-RYNS--DC--GGSQPPPHS-RSGQNLGSEPYSDLGASTSDGLPCSNKQTA 570
Query: 574 NGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVS 633
+ + S++ + D +E+ +D ES + N +Q + N +
Sbjct: 571 SRLCSPSSDANILPD--DESFPVDHESTEGNLGHQTE----------------NLDQTLG 612
Query: 634 SQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPS 693
+Q+ LLLEA+LRS+LF LGMR SK +CFN E +++ + D+ S++ Q +GS S
Sbjct: 613 NQNALLLEASLRSKLFEHLGMRAESKGV-TCFNGETVIDRGDERDVASERTQRDDGSPFS 671
Query: 694 SGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTS 753
Q G +K + EAP + + + EF S+ + ++ + +S
Sbjct: 672 EIYQHNDSREPGANKLQGNPSEAPVE-------RRSIEEFQSSVDMESHRSSPENDLLSS 724
Query: 754 VLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVA-CVNSDKTQACYLIANS 812
V LS P+ R HLK + + G + ++ + + SDK Q L +
Sbjct: 725 VALSGPLFRSTIYHLKVP--------GSSITSLGPEYTLQNKSYSLYSDKRQCRSLTQTT 776
Query: 813 KPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADR--NKNLH 870
+ ++G YTCNL +DP WPLCMYELRG+CNNDECPWQH K F+D +++LH
Sbjct: 777 VYET-------KIGCYTCNLKVDPSWPLCMYELRGRCNNDECPWQHFKDFSDDSLHQSLH 829
Query: 871 DDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHG 930
D D ++GS+ Q+ N +K S+ D + PTY+V LD +K DS+ Y+SV+A+RHG
Sbjct: 830 DPPDG---RVGSSSHQKKHN-SSKGSQILDTVVSPTYLVSLDTMKVDSWSYESVLAQRHG 885
Query: 931 LCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVE 990
W K S LA S+ +++PA + +GRIE +G+ SS+FR ++ ++
Sbjct: 886 QIWWKHFSACLASSNSLYRNVPAKEN---EGRIEVLGNSKTYSSYFRIKHSLM------- 935
Query: 991 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG 1050
ALSLLS+ LE DPTSEILW YLLI++ S G
Sbjct: 936 --------------------------ALSLLSQCLEGDPTSEILWTVYLLIYHVYEGSDG 969
Query: 1051 KDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1110
K DMFSY VKH+ SY +WLMYI+SR LN + AYDAALS LC AS S D HASAC
Sbjct: 970 K-DMFSYGVKHSSRSYVIWLMYISSRGQLNDQFFAYDAALSALCNHASGSI-DRNHASAC 1027
Query: 1111 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1170
ILD+ LQM C+SGN KAIQR S+L PA S+D +S ILTCLT SDK +FWV
Sbjct: 1028 ILDVLLQMFNLLCISGNVSKAIQRTSKLQAPAAVSDDPDFSLMSHILTCLTYSDKCVFWV 1087
Query: 1171 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNG 1230
CCVYLVIYRKLPD+++Q LE EKEL I+WP V L+ D KQ A++L + + SVE +NG
Sbjct: 1088 CCVYLVIYRKLPDSIVQRLEMEKELLEIEWPSVNLDGDVKQMALRLFDKGMRSVEHCTNG 1147
Query: 1231 ESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD 1290
S E R A FA+NH M ++ LE ++L+ +KLYP+CLEL L+ R+Q +
Sbjct: 1148 LS-ENGIQKRPAGLFALNHALFMVAVDELESCRDILKASVKLYPTCLELKLLAVRMQSKE 1206
Query: 1291 FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYS 1350
D+ S GFEE L + K IQCIWNQY EYALQ G +D A ELM RW+ SVW V
Sbjct: 1207 LKDMFSSGFEELLKQEAKEASCIQCIWNQYAEYALQGGSYDLARELMSRWYVSVWDVLSH 1266
Query: 1351 QVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1410
+ + ++A+ ++ + +V++ +Q+DVMFGYLNLSLH LLQ++W ARLA
Sbjct: 1267 K---NKTVLANEEEGDDSLLESALSDLNVAS-DQVDVMFGYLNLSLHNLLQSNWTGARLA 1322
Query: 1411 IDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLL 1470
ID ALKA A EHF +C+REHA+ LI+E + I+ Q++LLNSYLDRA SLP + L
Sbjct: 1323 IDQALKATAPEHFMYCLREHAVFQLIDELQATGEFSINLQMRLLNSYLDRASSLPVKEPL 1382
Query: 1471 PRQFI-NNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVE 1529
+FI N+ E+PR+++L+ NLL+PVSS+ +VN+VLE +GPSL+P SK K+LVDFVE
Sbjct: 1383 SWKFISNSAEKPRVRKLVTNLLAPVSSELLVVNVVLEAWHGPSLVPEKLSKQKELVDFVE 1442
Query: 1530 GIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVW 1589
I+ +VP NY LA SV KLL K+ + + + + FWA +LVS I A+PVAPEY+W
Sbjct: 1443 TILGLVPCNYPLALSVSKLLRKEEKHSDSGS-SSGIHFWAGLNLVSTISCAIPVAPEYIW 1501
Query: 1590 VEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT--KGDLNTIVKAAREK 1647
VEA I+ NI+ + +ERF K+ALSVYP S+KLW+CY L K+ + I +AA +K
Sbjct: 1502 VEAGEIVSNINGFKTRAERFLKKALSVYPMSVKLWRCYRSLCKSIEERRGIEIEEAAIKK 1561
Query: 1648 GIELD 1652
GI LD
Sbjct: 1562 GITLD 1566
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254612|ref|NP_181490.5| uncharacterized protein [Arabidopsis thaliana] gi|330254602|gb|AEC09696.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/1643 (39%), Positives = 905/1643 (55%), Gaps = 194/1643 (11%)
Query: 45 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 104
FP G N NLVI+FSDDDS D + +T + G+ P T S K+K +Q
Sbjct: 92 FPVRGNNSNLVINFSDDDS-GSESDCKGRTQTSKIQPKGTISGNRNPSTFSQTKLKGPRQ 150
Query: 105 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQ--RSRVRNFSIKTKLGSLEC 162
+AI KK L+T+ A S VS + ++ + S +T +
Sbjct: 151 ID---IRAITKK-----ALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQR 202
Query: 163 GDQVGLRNS-KLQDLRQQIALRESELKLKAAQQNKDLV-----------IDSCENYHLGR 210
+Q+ NS KLQDL+QQIALRESELKLKAAQ KD V I S + HL
Sbjct: 203 PEQIVESNSNKLQDLKQQIALRESELKLKAAQPKKDAVNPKITPARRVSIISDDTRHL-- 260
Query: 211 LDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKD 270
+ EP KKRLKVSG + + D R A + P+ P D
Sbjct: 261 -EPNEPPKKRLKVSGIDTSQPVIDYRV---AASAAAPMNAP------------------D 298
Query: 271 IPRSRIESEIVKWDKQNVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAE 330
I +S + N N+SC S + PV+ + N +SS K+
Sbjct: 299 IRKSLLPG----------VNANSSCKHLGSKSDEI-VPPVIPQHTVEGNTSSSVLQKSTG 347
Query: 331 RIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNNVHQV---N 385
++ + G + N R + + + K ++G+ S NN ++ N
Sbjct: 348 KV-----NHYEGGRELETMKNVDRS---VSSEQLLKIVNGNHQVFSRSSNNNWKRLPCSN 399
Query: 386 TASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQ 445
+ L N G+ V G+S +D+ SL ++EE LDKELEEAQE +R+ EIEER ALK YRKAQ
Sbjct: 400 NSGLYNIPGSTTVPGHSQLDMLSLTNLEESLDKELEEAQERKRLFEIEERNALKVYRKAQ 459
Query: 446 RALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHL 505
R+LIEANA C +LY +RE+ SA + S ++ DS LLW S E F + +G++ L
Sbjct: 460 RSLIEANARCAELYSKREILSAHYGSLIVRDSRLLWPSIHGENPETGFHFLNNSTGSIDL 519
Query: 506 APT----------STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCS 555
A S H+ S YVG + + S GQNLG S
Sbjct: 520 ATKTDIAQHSQLESNHKYNSEYVGSHPPPHSRS-----------------GQNLG---YS 559
Query: 556 EQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAE 615
+ ASTS+ LP +K + + S++ + D+E + +D ES + N +Q++
Sbjct: 560 DLGASTSDGLPCGNKQTASRLCSPSSDANILPDDE--SFPVDHESTEGNPGHQKE----- 612
Query: 616 GRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRA 675
N + +Q+ LLLEA+LRS+LF RLGMR S+ G+CFN E +++
Sbjct: 613 -----------NIDQTLGNQNALLLEASLRSKLFDRLGMRAESR-GGTCFNEETVIDRGD 660
Query: 676 DNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHS 735
+ D GS+ Q NGS S G +K + EAP + + +E+ L +
Sbjct: 661 ERDFGSEGTQRDNGSPFSEIYLHNDSLEPGANKLQGSPSEAPVERRS---IEENSLNYQL 717
Query: 736 TYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIE-E 794
+ + ++ +SV LS P+ R HLK + + G + ++ +
Sbjct: 718 SIDMESHRSSPENALLSSVALSGPLFRSTIYHLKVP--------GSSITSLGPEYILQNK 769
Query: 795 VACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDEC 854
+ SDK Q L IV K++G YTCNL +DP WPLCMYELRG+CNNDEC
Sbjct: 770 TYSLYSDKRQCRSLTET----IV---YEKKIGFYTCNLKVDPSWPLCMYELRGRCNNDEC 822
Query: 855 PWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDIL 914
WQH K F+D +LH ++GS+ Q+ N +K S+ D + PTY+V LD +
Sbjct: 823 SWQHFKDFSD--DSLHQSLHDPDGRVGSSSHQKTHN-SSKGSQILDSVFSPTYLVSLDTM 879
Query: 915 KADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSS 974
K DS+ Y+SV+A+RHG W K S LA S+ +++PA + +GRI +G+ SS
Sbjct: 880 KVDSWSYESVLAQRHGQIWCKHFSACLASSNSLYRNVPAKEN---EGRIVVLGNSKTYSS 936
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL 1034
+FR ++ ++ + Q ALSLLS+ LE DPTSEIL
Sbjct: 937 YFRIKHSLMWHIFQ----------------------------ALSLLSQGLEGDPTSEIL 968
Query: 1035 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1094
W YLLI+++ S GKD MFSY VKH+ SY +WLMYINSR LN +L AYD ALS LC
Sbjct: 969 WAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINSRGQLNDQLIAYDTALSALC 1027
Query: 1095 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS 1154
AS S D HASACILD+ LQM C+SGN KAIQRIS+L PA S+D +S
Sbjct: 1028 NHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRISKLQAPAAVSDDPDFSLMS 1086
Query: 1155 DILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI 1214
ILTCLT SDK +FWVCCVYLVIYRKLPD++++ LE EKEL I+WP V L+ D KQ A+
Sbjct: 1087 HILTCLTYSDKCVFWVCCVYLVIYRKLPDSIIRRLEMEKELLEIEWPTVNLDGDLKQMAL 1146
Query: 1215 KLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYP 1274
+L + + SVE +N ++K R A FA+N+ M ++ LE ++L+ ++LYP
Sbjct: 1147 RLFDKGMRSVEHGTNN-GIQK----RPAGLFALNYALFMIAVDELESRRDILKASVQLYP 1201
Query: 1275 SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAA 1334
+CLEL L+ R+Q ++ D+ S GFEE L + K IQCIWNQY EYAL+ G +D A
Sbjct: 1202 TCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQCIWNQYAEYALEGGSYDLAR 1261
Query: 1335 ELMDRWFHSVWKV---QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1391
ELM RW+ SVW V +Y V ++ D S S + +V++ +Q+DVMFGY
Sbjct: 1262 ELMSRWYGSVWDVLSHKYKTVRGNEEEGDDNMLESALS------DLNVAS-DQVDVMFGY 1314
Query: 1392 LNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQL 1451
LNLSLH LLQ++W EARLAID ALKA A EHF HC+REHA+ LINE + I+ Q+
Sbjct: 1315 LNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAVFQLINELQATGEFSINLQM 1374
Query: 1452 KLLNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYG 1510
+LLNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+PVSS+ +VN+VLE +G
Sbjct: 1375 RLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAPVSSELFVVNVVLEAWHG 1434
Query: 1511 PSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWAS 1570
PSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K+ + + + + FWA
Sbjct: 1435 PSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRKEEKQSDSGS-SSGIHFWAG 1493
Query: 1571 SSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDL 1630
+L S I A+PVAPEY+WVEA I+ +I+ + +ERF K+ALSVYP S+KLW+CY+ L
Sbjct: 1494 LNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLKKALSVYPMSVKLWRCYWSL 1553
Query: 1631 SKT--KGDLNTIVKAAREKGIEL 1651
K+ + I +AAR+KGI L
Sbjct: 1554 CKSIEERRGIEIEEAARKKGITL 1576
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3355487|gb|AAC27849.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/1643 (39%), Positives = 895/1643 (54%), Gaps = 204/1643 (12%)
Query: 45 FPSSGKNDNLVISFSDDDSGSDTEDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNLQQ 104
FP G N NLVI+FSDDDS D + +T + G+ P T S K+K +Q
Sbjct: 92 FPVRGNNSNLVINFSDDDS-GSESDCKGRTQTSKIQPKGTISGNRNPSTFSQTKLKGPRQ 150
Query: 105 TARNVSKAIPKKLSPSRTLTTTRNHGGANSWVSRPPSVDQ--RSRVRNFSIKTKLGSLEC 162
+AI KK L+T+ A S VS + ++ + S +T +
Sbjct: 151 ID---IRAITKK-----ALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQR 202
Query: 163 GDQVGLRNS-KLQDLRQQIALRESELKLKAAQQNKDLV-----------IDSCENYHLGR 210
+Q+ NS KLQDL+QQIALRESELKLKAAQ KD V I S + HL
Sbjct: 203 PEQIVESNSNKLQDLKQQIALRESELKLKAAQPKKDAVNPKITPARRVSIISDDTRHL-- 260
Query: 211 LDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKVDRSQKD 270
+ EP KKRLKVSG + + D R A + P+ P D
Sbjct: 261 -EPNEPPKKRLKVSGIDTSQPVIDYRV---AASAAAPMNAP------------------D 298
Query: 271 IPRSRIESEIVKWDKQNVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAE 330
I +S + N N+SC S + PV+ + N +SS K+
Sbjct: 299 IRKSLLPG----------VNANSSCKHLGSKSDEI-VPPVIPQHTVEGNTSSSVLQKSTG 347
Query: 331 RIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNNVHQV---N 385
++ + G + N R + + + K ++G+ S NN ++ N
Sbjct: 348 KV-----NHYEGGRELETMKNVDRS---VSSEQLLKIVNGNHQVFSRSSNNNWKRLPCSN 399
Query: 386 TASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQ 445
+ L N G+ V G+S +D+ SL ++EE LDKELEEAQE +R+ EIEER ALK YRKAQ
Sbjct: 400 NSGLYNIPGSTTVPGHSQLDMLSLTNLEESLDKELEEAQERKRLFEIEERNALKVYRKAQ 459
Query: 446 RALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHL 505
R+LIEANA C +LY +RE+ SA + S ++ DS LLW S E F + +G++ L
Sbjct: 460 RSLIEANARCAELYSKREILSAHYGSLIVRDSRLLWPSIHGENPETGFHFLNNSTGSIDL 519
Query: 506 APT----------STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCS 555
A S H+ S YVG + + S GQNLG S
Sbjct: 520 ATKTDIAQHSQLESNHKYNSEYVGSHPPPHSRS-----------------GQNLG---YS 559
Query: 556 EQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAE 615
+ ASTS+ LP +K + + S++ + D+E + +D ES + N +Q++
Sbjct: 560 DLGASTSDGLPCGNKQTASRLCSPSSDANILPDDE--SFPVDHESTEGNPGHQKE----- 612
Query: 616 GRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRA 675
N + +Q+ LLLEA+LRS+LF RLGMR S+ G+CFN E +++
Sbjct: 613 -----------NIDQTLGNQNALLLEASLRSKLFDRLGMRAESR-GGTCFNEETVIDRGD 660
Query: 676 DNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHS 735
+ D GS+ Q NGS S G +K + EAP + + +E+ L +
Sbjct: 661 ERDFGSEGTQRDNGSPFSEIYLHNDSLEPGANKLQGSPSEAPVERRS---IEENSLNYQL 717
Query: 736 TYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIE-E 794
+ + ++ +SV LS P+ R HLK + + G + ++ +
Sbjct: 718 SIDMESHRSSPENALLSSVALSGPLFRSTIYHLKVP--------GSSITSLGPEYILQNK 769
Query: 795 VACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDEC 854
+ SDK Q L IV K++G YTCNL +DP WPLCMYELRG+CNNDEC
Sbjct: 770 TYSLYSDKRQCRSLTET----IV---YEKKIGFYTCNLKVDPSWPLCMYELRGRCNNDEC 822
Query: 855 PWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDIL 914
WQH K F+D +LH ++GS+ Q+ N +K S+ D + PTY+V LD +
Sbjct: 823 SWQHFKDFSD--DSLHQSLHDPDGRVGSSSHQKTHN-SSKGSQILDSVFSPTYLVSLDTM 879
Query: 915 KADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSS 974
K DS+ Y+SV+A+RHG W K S LA S+ +++PA + +GRI +G+ SS
Sbjct: 880 KVDSWSYESVLAQRHGQIWCKHFSACLASSNSLYRNVPAKEN---EGRIVVLGNSKTYSS 936
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL 1034
+FR ++ ++ + Q ALSLLS+ LE DPTSEIL
Sbjct: 937 YFRIKHSLMWHIFQ----------------------------ALSLLSQGLEGDPTSEIL 968
Query: 1035 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1094
W YLLI+++ S GKD MFSY VKH+ SY +WLMYINSR LN +L AYD ALS LC
Sbjct: 969 WAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINSRGQLNDQLIAYDTALSALC 1027
Query: 1095 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS 1154
AS S D HASACILD+ LQM C+SGN KAIQRIS+L PA S+D +S
Sbjct: 1028 NHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRISKLQAPAAVSDDPDFSLMS 1086
Query: 1155 DILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI 1214
ILTCLT SDK I YRKLPD++++ LE EKEL I+WP V L+ D KQ A+
Sbjct: 1087 HILTCLTYSDKFI----------YRKLPDSIIRRLEMEKELLEIEWPTVNLDGDLKQMAL 1136
Query: 1215 KLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYP 1274
+L + + SVE +N ++K R A FA+N+ M ++ LE ++L+ ++LYP
Sbjct: 1137 RLFDKGMRSVEHGTNN-GIQK----RPAGLFALNYALFMIAVDELESRRDILKASVQLYP 1191
Query: 1275 SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAA 1334
+CLEL L+ R+Q ++ D+ S GFEE L + K IQCIWNQY EYAL+ G +D A
Sbjct: 1192 TCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQCIWNQYAEYALEGGSYDLAR 1251
Query: 1335 ELMDRWFHSVWKV---QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1391
ELM RW+ SVW V +Y V ++ D S S + +V++ +Q+DVMFGY
Sbjct: 1252 ELMSRWYGSVWDVLSHKYKTVRGNEEEGDDNMLESALS------DLNVAS-DQVDVMFGY 1304
Query: 1392 LNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQL 1451
LNLSLH LLQ++W EARLAID ALKA A EHF HC+REHA+ LINE + I+ Q+
Sbjct: 1305 LNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAVFQLINELQATGEFSINLQM 1364
Query: 1452 KLLNSYLDRARSLPYLKLLPRQFI-NNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYG 1510
+LLNSYLDRA SLP + L +FI N+ E+PR+++L+ NLL+PVSS+ +VN+VLE +G
Sbjct: 1365 RLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLLAPVSSELFVVNVVLEAWHG 1424
Query: 1511 PSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWAS 1570
PSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K+ + + + + FWA
Sbjct: 1425 PSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRKEEKQSDSGS-SSGIHFWAG 1483
Query: 1571 SSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDL 1630
+L S I A+PVAPEY+WVEA I+ +I+ + +ERF K+ALSVYP S+KLW+CY+ L
Sbjct: 1484 LNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLKKALSVYPMSVKLWRCYWSL 1543
Query: 1631 SKT--KGDLNTIVKAAREKGIEL 1651
K+ + I +AAR+KGI L
Sbjct: 1544 CKSIEERRGIEIEEAARKKGITL 1566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486637|ref|XP_002279244.2| PREDICTED: uncharacterized protein LOC100253034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/674 (62%), Positives = 504/674 (74%), Gaps = 4/674 (0%)
Query: 980 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYL 1039
NG N++KQ N Q +EMALL+LNQ+ NK+EGMKKALS+LSRALEADPTS LWI YL
Sbjct: 1445 NGGPNQIKQGLADNVQSLEMALLVLNQEVNKVEGMKKALSVLSRALEADPTSVALWIVYL 1504
Query: 1040 LIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1099
LI+YS+ ++GKDDMF Y++KH EGSY LWLM+INSR L+ RL AYD ALS LCR ASA
Sbjct: 1505 LIYYSSQKTIGKDDMFIYAIKHTEGSYELWLMFINSRAQLDERLVAYDTALSALCRHASA 1564
Query: 1100 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC 1159
SD D HASACILDLFLQM+ C CMS N KAIQRI LL AT S++ HSL LSDILTC
Sbjct: 1565 SDRDAKHASACILDLFLQMMGCLCMSRNIRKAIQRIYGLLPSATNSDEPHSLSLSDILTC 1624
Query: 1160 LTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM 1219
LTI+DK IFWVCCVYLVIYRKLPD ++Q ECEKE FAI WP V L DEKQ+A+KL+
Sbjct: 1625 LTITDKCIFWVCCVYLVIYRKLPDDIVQRFECEKEFFAISWPSVCLRADEKQQALKLMGT 1684
Query: 1220 AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 1279
AVNSVE Y + ESL+ ET LRSA FA+NH+ C+ + LEC NLL+KY KLYPSCLEL
Sbjct: 1685 AVNSVESYFDNESLQSETTLRSAQLFALNHVRCVVAVESLECGRNLLDKYTKLYPSCLEL 1744
Query: 1280 VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339
VL+ A+ QKHDFG L+ GFE+AL WPK PGIQCIW+QY EYAL+NG D A E+M R
Sbjct: 1745 VLISAQTQKHDFGGLNFGGFEDALSNWPKESPGIQCIWSQYAEYALRNGSFDVAKEIMSR 1804
Query: 1340 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL 1399
W++SVWKVQ Q + D S S ES S+ + SV ++MD MFG LNLSL+RL
Sbjct: 1805 WYNSVWKVQCPQNDSLSGTDGDNSCCSLESALASNLDISVLGSSKMDAMFGLLNLSLYRL 1864
Query: 1400 LQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLD 1459
QND EAR+ ID +LK AA E+FKHCVREHAM +L + SE KE A I+ LK+L YL
Sbjct: 1865 FQNDLTEARMIIDKSLKTAAPEYFKHCVREHAMFMLTDGSELKEDASINGMLKILKGYLS 1924
Query: 1460 RARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFS 1519
+++ P + L R+FI I++PR+QQLI N+LSP+SSDFSL+NLVLEV +G SLLP+ S
Sbjct: 1925 VSQNYPVSEPLSRKFIQTIKKPRVQQLISNMLSPMSSDFSLLNLVLEVWHGQSLLPQESS 1984
Query: 1520 KLKDLVDFVEGIMEIVPSNYQLAFSVFK-LLNKDHNPNITDAVPESVLFWASSSLVSAIF 1578
KLKDLVDFVE IMEI P NYQLA S K LL++ H+ A SVLFW SS L++AI
Sbjct: 1985 KLKDLVDFVEAIMEISPCNYQLAMSACKQLLSRGHSSGDASA---SVLFWGSSLLINAIS 2041
Query: 1579 HAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLN 1638
A+PVAPE++WVEAAGIL N+ + +S F KRALS+YPFSI+LWK Y LSK G+++
Sbjct: 2042 QAIPVAPEFIWVEAAGILDNLMDNQVLSLNFHKRALSLYPFSIRLWKSYLMLSKITGNMD 2101
Query: 1639 TIVKAAREKGIELD 1652
++V AA+EKGIELD
Sbjct: 2102 SVVAAAKEKGIELD 2115
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100939|ref|XP_002312077.1| predicted protein [Populus trichocarpa] gi|222851897|gb|EEE89444.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/593 (60%), Positives = 452/593 (76%), Gaps = 2/593 (0%)
Query: 1059 VKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQM 1118
VK+NE SY LWLMYINSR L+ R+ AY+AAL+ LCR ASA D M+ASACILDLFLQM
Sbjct: 54 VKNNERSYGLWLMYINSRIHLDDRMVAYNAALTALCRQASAFDKGNMYASACILDLFLQM 113
Query: 1119 LQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIY 1178
+ C CMSGN KAIQ+I L A S++ H L LSDIL CLT SDK IFWVCCVYLVIY
Sbjct: 114 MDCLCMSGNVGKAIQKIQGLFPVAANSDEPHFLLLSDILACLTNSDKYIFWVCCVYLVIY 173
Query: 1179 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN 1238
RKLPDA++Q EC+KEL AI+WP VQL ++EKQRA+KL+EMAV+SVE+ N ESLE + N
Sbjct: 174 RKLPDAIVQCFECDKELLAIEWPYVQLPNEEKQRAVKLVEMAVDSVEMSVNSESLESDKN 233
Query: 1239 LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1298
R A FA++HI C V +GL C NLL KY KLYPSC+ELVL+ ARL+K+ G +S G
Sbjct: 234 GRMAQQFALSHIRCTLVFDGLACCQNLLGKYTKLYPSCVELVLLSARLKKNGLGSVSFEG 293
Query: 1299 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1358
FEEA+ WPK VPGI CIWNQY+E ALQ DFA EL RWF+SV KVQY Q EI D +
Sbjct: 294 FEEAISNWPKEVPGIHCIWNQYIECALQEEGPDFAKELTVRWFNSVSKVQYPQNEILDAV 353
Query: 1359 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1418
+ S S ES S S+ +F + N NQMD+MFG +NLSL +LL D EA +AID ALKAA
Sbjct: 354 DGNSSLGSLESASASNLDFLIPNSNQMDMMFGLINLSLAKLLHKDHVEAHVAIDRALKAA 413
Query: 1419 ASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNI 1478
E+ KHC+ EHA+ LL +E + ++ AP+S +LK+LN YL+ ++LP + L R+FI+NI
Sbjct: 414 PPEYIKHCLSEHAVFLLNHEPKLRKDAPVSEKLKILNGYLNDTQALPVCEPLSRRFIDNI 473
Query: 1479 ERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSN 1538
E+P++QQLI ++LSPVSSDFSLVNLVLEV YGPSLLP ++ K+LVDFVE I+E+VPSN
Sbjct: 474 EKPKVQQLISSILSPVSSDFSLVNLVLEVWYGPSLLPPKSNQPKELVDFVEAILEMVPSN 533
Query: 1539 YQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGN 1598
Y +A SV KLL + + + + +SVL+WA S LV AIFHA+PV PE+VWVEAAGILG+
Sbjct: 534 YPIALSVCKLLCRGY--SYINVTSDSVLYWACSILVDAIFHAIPVPPEFVWVEAAGILGD 591
Query: 1599 ISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIEL 1651
IS ++ IS+RF+K+ALS +PFS+KLW CYY+LSK++G ++T+++ ARE+GIE+
Sbjct: 592 ISGVKLISDRFYKKALSAHPFSMKLWSCYYNLSKSRGYVSTVIQKARERGIEV 644
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483951|ref|XP_004156742.1| PREDICTED: uncharacterized protein LOC101228328 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/650 (53%), Positives = 451/650 (69%), Gaps = 14/650 (2%)
Query: 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1068
N EGMKKAL +LSRA+E +P S LW YLLIFYS T + GKDDMFSY+VKHN SY L
Sbjct: 2 NSREGMKKALPVLSRAVENNPKSIALWAVYLLIFYSYTTTGGKDDMFSYAVKHNGQSYEL 61
Query: 1069 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 1128
WLMYINSR L+ RL AYD+A+S LC + D +ASA ILDL LQM C CMSGN
Sbjct: 62 WLMYINSRMNLDARLAAYDSAISALCHNIFTHNLDGTYASAHILDLILQMTNCLCMSGNV 121
Query: 1129 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQL 1188
EKAIQRI LL A S++ +S SD+LTCL ISDK IFWVC VYLV+YRKLP A++Q
Sbjct: 122 EKAIQRIFGLLQVAMDSDEPYSFTHSDMLTCLNISDKCIFWVCVVYLVLYRKLPHAIVQQ 181
Query: 1189 LECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1248
LECEKEL I+WP V L + EK RA ++++ AV+ V+ N ESL+ + +S FAVN
Sbjct: 182 LECEKELIEIEWPAVHLTNGEKLRASRVVKKAVDFVDSCLNNESLDSKCYQKSIQMFAVN 241
Query: 1249 HIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPK 1308
HI C+ +E S NLL+KY+KLYPSC EL+L+ R +KHDFGD + + FE+A+ WPK
Sbjct: 242 HIRCLMAFEDIEFSRNLLDKYVKLYPSCPELLLLDIRARKHDFGDATVMAFEKAIRYWPK 301
Query: 1309 GVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD------M 1362
VPG+QCIWNQY EY L+NGR ELM R F S K+ S+ P+ +D +
Sbjct: 302 EVPGVQCIWNQYAEYLLRNGRIKCTEELMARRFDSTSKMDCSKTR--TPVNSDCDSLHLL 359
Query: 1363 SHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH 1422
H+S D + N++DV+F YLN S+H+LL ND EARLA + AL+AA+SE
Sbjct: 360 DHASGSIVRALD-----CSPNEVDVVFWYLNHSVHKLLLNDQLEARLAFENALRAASSET 414
Query: 1423 FKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPR 1482
F++C+RE+AM LL +ES E A + +L YL+ AR+ P + L R+FI +I +PR
Sbjct: 415 FRYCMREYAMFLLTDESLLNEAASVGGIRSILEGYLNDARAFPVPEPLSRRFIKDIRKPR 474
Query: 1483 LQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLA 1542
++ L+ N+LSP+S D SLVN +LEV YGPSLLP+ F+K K+LVDFVE I+EI+PSNYQL
Sbjct: 475 VRLLVSNMLSPISPDVSLVNCILEVWYGPSLLPQKFNKPKELVDFVETILEILPSNYQLV 534
Query: 1543 FSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSI 1602
SV K L D N + A P S++FWA S+L+ AIF +VP+ PE++WVEAA IL N+ +
Sbjct: 535 LSVCKQLCNDDNYSSQAASP-SLIFWACSNLIIAIFSSVPIPPEFIWVEAANILANVKGL 593
Query: 1603 EEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD 1652
E I+ERF KRALSVYPFS++LWK YY++ KT+GD + +++ E+GI+L+
Sbjct: 594 EAITERFHKRALSVYPFSVQLWKSYYNICKTRGDTSAVLQEVNERGIQLN 643
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77556192|gb|ABA98988.1| expressed protein [Oryza sativa Japonica Group] gi|125579753|gb|EAZ20899.1| hypothetical protein OsJ_36538 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1308 (35%), Positives = 692/1308 (52%), Gaps = 176/1308 (13%)
Query: 394 GNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANA 453
G+ V N + SLL+MEE ++ELE+AQEHRR CE+EER+AL+AYR+AQRALIEAN
Sbjct: 510 GDQIVITGQNTSLLSLLEMEEFQERELEDAQEHRRKCEVEEREALRAYRRAQRALIEANE 569
Query: 454 SCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPT--STH 511
C L R+RELCSA+ F+ ++S+L LS +G+ + P+ ++
Sbjct: 570 RCAILRRKRELCSAQVHGFIAENSSLAQP------------LSIQNAGHGLVMPSVLNSQ 617
Query: 512 QMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKN 571
G + NQGG S Q N ++ + D +LLP SK
Sbjct: 618 ANADGQMPGNQGGRSGSPYPEESPQQPVDKHEARSHNF-NDNSTPSDYMEDDLLP-PSKR 675
Query: 572 ALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSA 631
A +S+ + D EE V P E RQIS +
Sbjct: 676 A------RSDCISNLEDHMEETIH-----VYP----------VENRQISGE--------- 705
Query: 632 VSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSV 691
S QD LLEA+LRS L R G +++ +SG ++S G V
Sbjct: 706 -SVQDYELLEASLRSRLVERFGKKSYLNNSGEATE------------------ELSFGKV 746
Query: 692 PSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSK---GNKFPTTM 748
S + ++ +G +QEA + +G++E + H K + P+
Sbjct: 747 --SEIEREKAYVGPL------LQEADENVMTNI---EGMVELGNDAHEKRADSSNAPSIG 795
Query: 749 NHSTSVLLSPPILRGAFGHLKSELCIALS----------NQSGNQHNHGRNFEIEEVAC- 797
N+ +S +FG ELC+ LS Q+ +H G ++ + A
Sbjct: 796 NYDHEENIS------SFG----ELCMPLSVTHPIIPSSAPQNAARHMKGLFPDLHKKASD 845
Query: 798 -VNSDKTQACYLIANSK-PDIVKGYVGKEMGSYT------CNLAIDPLWPLCMYELRGKC 849
N +T +A + PD+ K +M S T + A+DP WP CM+ELRGKC
Sbjct: 846 YKNDCQTSNAASVATVRLPDVAKD--NAKMHSTTRKDMDIVSGAVDPFWPFCMFELRGKC 903
Query: 850 NNDECPWQHVKYFADR-NKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYI 908
N++ECPWQHV++ A R +K+ S I + Q IL PTY
Sbjct: 904 NDEECPWQHVEHHAWRKSKHTKHSKPSFSGWIPYGLFQH-------------ILPVPTYR 950
Query: 909 VGLDILKADSYQYQSVIARRHGLCWQKCLSVS----LAISSIYPKDLPADLSLIGDGRIE 964
VG ++++AD QSV+A WQ+ S L++ + P D P SL
Sbjct: 951 VGSNLIRADLNLIQSVLASSIWQYWQRGFCASFPFPLSVQRVLPSDAP---SLQAGDDSS 1007
Query: 965 CIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRA 1024
+RQ R + NK+ Q + E +E AL++ NK + +K AL L+RA
Sbjct: 1008 ANFDRDRQLLNLRMLDSRKNKIVQGSVDAELFLEGALILYFGKINKPDRLK-ALLYLARA 1066
Query: 1025 LEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLD 1084
+EADP++ ILW+ YL I+Y +GKDDMFS++V+HN SY LWLMYINSR + RLD
Sbjct: 1067 IEADPSTVILWVFYLHIYYQKDEGLGKDDMFSHAVQHNVCSYELWLMYINSRLRFDDRLD 1126
Query: 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1144
AY+ ALS+LC+ + +D + S+ +LD+FLQM+ CMSGN +KAI RI +L AT
Sbjct: 1127 AYNDALSMLCQMTAVTDMELKDRSSFVLDIFLQMVYFLCMSGNVDKAISRIYGILPTATP 1186
Query: 1145 --SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELF-AIDWP 1201
S D+ L+D+++CLTISD+ IFW+ C+Y+ IYRKLP+ ++ LE K+L ++ W
Sbjct: 1187 DCSGDK---LLADVISCLTISDRCIFWISCIYVSIYRKLPEEIIDQLEFLKDLPNSLVWS 1243
Query: 1202 PVQLEDDEKQRAIKLI-----EMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVL 1256
P++L D + + + L+ ++AV+ E NG+ + LR + AVNHI C+A L
Sbjct: 1244 PIELTVDNRSQILVLLNYAAGKIAVDINETVKNGDP----SYLRLSQFLAVNHINCLATL 1299
Query: 1257 NGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSV-GFEEALIKWPKGVPGIQC 1315
G + NLL KY++ YP C +++ ARL + +G + GF+E L+ WPK V GIQ
Sbjct: 1300 EGFQSCANLLVKYMEEYPMCPHILVFSARLHR-KYGSCPGLKGFDELLLGWPKEVQGIQY 1358
Query: 1316 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQ-------VEISDPLVADMSHSSPE 1368
+WNQ E+AL + + A +L+ RWF K Q +EIS+ S SS +
Sbjct: 1359 LWNQCAEHALADNI-ELAEKLLTRWFEEYGKDGDIQSGGATRPMEISNEESVRSSVSSIQ 1417
Query: 1369 ----STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1424
TSTS+ D +F LNLSL+R ++N+ EA++A+D ALK A E ++
Sbjct: 1418 EVGSGTSTSE-----------DQIFWLLNLSLYRTIENNLQEAKVAMDKALKLAHGESYE 1466
Query: 1425 HCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQ 1484
HC++EHA + + ++ L++ YL R+LP LL R+F+ N+++ RL+
Sbjct: 1467 HCIKEHAAIHTLEKTSSSTDVQTQATFSLISGYLVDQRNLPVRDLLSRRFMKNVKKHRLK 1526
Query: 1485 QLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFS 1544
+LID + P S++ +L+N VLEVCYGPSLLP ++K LVDFVE +ME++P+NY+LA +
Sbjct: 1527 RLIDETIGPTSANPALINSVLEVCYGPSLLPETIGEVKYLVDFVESVMEVLPANYRLALA 1586
Query: 1545 VFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEE 1604
V K + K + D++ FWASS L++AIF AVPVAPE VW+E A +L + + E
Sbjct: 1587 VGKFMVKHCTGD--DSISMGTRFWASSILINAIFRAVPVAPESVWLEGASLLEKLQAAET 1644
Query: 1605 ISERFFKRALSVYPFSIKLWKCYYDLSKTKG-DLNTIVKAAREKGIEL 1651
+ +RF+++A SVYPFS KLW Y + K G +I +AAR++GIEL
Sbjct: 1645 V-KRFYQQATSVYPFSFKLWHSYLNSCKASGSSTESIAEAARQRGIEL 1691
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1652 | ||||||
| TAIR|locus:2039797 | 1577 | AT2G39580 "AT2G39580" [Arabido | 0.375 | 0.393 | 0.501 | 1.2e-219 | |
| UNIPROTKB|E1C1R6 | 1696 | ZFC3H1 "Uncharacterized protei | 0.172 | 0.168 | 0.245 | 1.1e-10 | |
| UNIPROTKB|O60293 | 1989 | ZFC3H1 "Zinc finger C3H1 domai | 0.181 | 0.150 | 0.214 | 6.6e-09 | |
| UNIPROTKB|E2QSB0 | 1984 | ZFC3H1 "Uncharacterized protei | 0.181 | 0.151 | 0.205 | 4.2e-07 | |
| UNIPROTKB|E1BIV7 | 1988 | LOC781886 "Uncharacterized pro | 0.217 | 0.181 | 0.2 | 4.3e-07 | |
| UNIPROTKB|F6UU41 | 1994 | ZFC3H1 "Uncharacterized protei | 0.181 | 0.150 | 0.205 | 4.3e-07 | |
| UNIPROTKB|E9PTM2 | 1993 | E9PTM2 "Uncharacterized protei | 0.173 | 0.144 | 0.203 | 1.3e-06 | |
| UNIPROTKB|F1MAP0 | 1993 | F1MAP0 "Uncharacterized protei | 0.173 | 0.144 | 0.203 | 3.4e-06 |
| TAIR|locus:2039797 AT2G39580 "AT2G39580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 1.2e-219, Sum P(3) = 1.2e-219
Identities = 322/642 (50%), Positives = 421/642 (65%)
Query: 1016 KALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINS 1075
+ALSLLS+ LE DPTSEILW YLLI+++ S GKD MFSY VKH+ SY +WLMYINS
Sbjct: 950 QALSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINS 1008
Query: 1076 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1135
R LN +L AYD ALS LC AS S D HASACILD+ LQM C+SGN KAIQRI
Sbjct: 1009 RGQLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRI 1067
Query: 1136 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1195
S+L PA S+D +S ILTCLT SDK +FWVCCVYLVIYRKLPD++++ LE EKEL
Sbjct: 1068 SKLQAPAAVSDDPDFSLMSHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIIRRLEMEKEL 1127
Query: 1196 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV 1255
I+WP V L+ D KQ A++L + + SVE + ++K R A FA+N+ M
Sbjct: 1128 LEIEWPTVNLDGDLKQMALRLFDKGMRSVE-HGTNNGIQK----RPAGLFALNYALFMIA 1182
Query: 1256 LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC 1315
++ LE ++L+ ++LYP+CLEL L+ R+Q ++ D+ S GFEE L + K IQC
Sbjct: 1183 VDELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQC 1242
Query: 1316 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMXXXXXXXXXX 1372
IWNQY EYAL+ G +D A ELM RW+ SVW V +Y V ++ D
Sbjct: 1243 IWNQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDD------NMLES 1296
Query: 1373 XXXXXXVSNRNQMDVMFGYLNLSLHRLLQNDWNEXXXXXXXXXXXXXSEHFKHCVREHAM 1432
V++ +Q+DVMFGYLNLSLH LLQ++W E EHF HC+REHA+
Sbjct: 1297 ALSDLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAV 1355
Query: 1433 LLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINN-IERPRLQQLIDNLL 1491
LINE + I+ Q++LLNSYLDRA SLP + L +FI+N E+PR+++L+ NLL
Sbjct: 1356 FQLINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLL 1415
Query: 1492 SPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNK 1551
+PVSS+ +VN+VLE +GPSL+P SK K+LVDFVE I+ +VPSNY LA SV KLL K
Sbjct: 1416 APVSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRK 1475
Query: 1552 DHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFK 1611
+ + + + + FWA +L S I A+PVAPEY+WVEA I+ +I+ + +ERF K
Sbjct: 1476 EEKQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLK 1534
Query: 1612 RALSVYPFSIKLWKCYYDLSKTKGDLN--TIVKAAREKGIEL 1651
+ALSVYP S+KLW+CY+ L K+ + I +AAR+KGI L
Sbjct: 1535 KALSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1576
|
|
| UNIPROTKB|E1C1R6 ZFC3H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 1.1e-10, Sum P(6) = 1.1e-10
Identities = 79/322 (24%), Positives = 143/322 (44%)
Query: 975 FFRSRNGVLNKLK---QVELSNEQC-VEMALLILNQ-DANKLEGMKKALSLLSRALEADP 1029
+F S ++ L+ Q N Q +++A LNQ + + E + L++L+RALE +
Sbjct: 1045 YFTSETDDISNLEASVQENPCNVQLWIKLAYKYLNQNEGSSSECLDSTLNVLARALENNK 1104
Query: 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089
+ +W YL +F +M +V++ SY +W ++N L D D
Sbjct: 1105 ENPEIWCHYLRLFSKRGTKEEIQEMCETAVEY-AASYQIWWTFLN----LESSFDGKDYV 1159
Query: 1090 LS-VLCRCASASDGDEMHA--SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1146
+L ++G+E + S +L+ L + +G + A+ + L A N
Sbjct: 1160 CGRILQFLMEVTEGEENPSLLSFQLLETLLYRVHLSLFTGRYQNALLLLQNALKSA---N 1216
Query: 1147 DRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC------EKELFAIDW 1200
++ +S+ LT +SD+ + W+ ++L+ + LP KE F I W
Sbjct: 1217 EK---IISERLT---LSDRCLAWLSYIHLIEFNTLPVKFYDPANVGPSRIMNKEPFLIPW 1270
Query: 1201 PPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNG 1258
VQ D K L+ M ++V+ ++ E+LE + R A CF + N I + +L
Sbjct: 1271 QTVQ---DVKTDPDTLLAMFEDAVKTCTD-ENLEADK--RIAVCFPLYRNMIALLKLLER 1324
Query: 1259 LECSMNLLEKYIKLYPS-CLEL 1279
E ++ L ++L P+ CL L
Sbjct: 1325 WESAVELCRSLLELCPNNCLLL 1346
|
|
| UNIPROTKB|O60293 ZFC3H1 "Zinc finger C3H1 domain-containing protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 6.6e-09, Sum P(6) = 6.6e-09
Identities = 71/331 (21%), Positives = 135/331 (40%)
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1029
+F + + L+ L N V++ L + LNQ+ + E + AL++L+RALE +
Sbjct: 1339 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGECSESLDSALNVLARALENNK 1398
Query: 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1399 DNPEIWCHYLRLFSKRGTKDEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1457
Query: 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149
L L A + + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1458 LEFLMGAAKQETSNIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKSA---ND-- 1510
Query: 1150 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE------CEKELFAIDWPPV 1203
+ L SD+ + W+ ++L+ + LP E F + W V
Sbjct: 1511 ----GIVAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTESFVMPWQAV 1566
Query: 1204 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1263
Q D K L+ + ++V+ ++ ESL E + + N I +L E +M
Sbjct: 1567 Q---DVKTNPDMLLAVFEDAVKACTD-ESLAVEERIEACLPLYTNMIALHQLLERYEAAM 1622
Query: 1264 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1290
L + ++ P +C LE LV + + +HD
Sbjct: 1623 ELCKSLLESCPINCQLLEALVALYLQTNQHD 1653
|
|
| UNIPROTKB|E2QSB0 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 4.2e-07, Sum P(6) = 4.2e-07
Identities = 68/331 (20%), Positives = 132/331 (39%)
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQ-DANKLEGMKKALSLLSRALEADP 1029
+F + + L+ L N V++ L + LNQ D E + AL++L+RALE +
Sbjct: 1334 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNDGLCSESLDSALNVLARALENNK 1393
Query: 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1394 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1452
Query: 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149
+ L A D + S +L+ L +Q +G + A+ + L A G
Sbjct: 1453 VEFLMGAAKQEASDVL--SFQLLEALLFRVQLHIFTGRCQSALAVLQNALKSANGGI--- 1507
Query: 1150 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1203
+ L D+ + W+ ++L+ + LP E F + W V
Sbjct: 1508 ------VAEYLKTGDRCLAWLAYIHLIEFNVLPSKFYDPSNANPSRIVNTESFVMPWQAV 1561
Query: 1204 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1263
Q D K L+ + ++V+ ++ E+L E + N I +L E ++
Sbjct: 1562 Q---DVKTNPDMLLAVFEDAVKACTD-ENLTVEERVEVCVPLYTNMIALHQLLERYEAAV 1617
Query: 1264 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1290
L ++ ++ P +C LE LV + + +HD
Sbjct: 1618 ELCKRLLETCPMNCQLLEALVALYLQTDQHD 1648
|
|
| UNIPROTKB|E1BIV7 LOC781886 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 4.3e-07, Sum P(6) = 4.3e-07
Identities = 79/395 (20%), Positives = 156/395 (39%)
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1029
+F + + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1338 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1397
Query: 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1398 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1456
Query: 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149
+ L A D + S +L+ L +Q +G + A+ + L AT
Sbjct: 1457 VEFLMGAAKREASDTL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLATDGR--- 1511
Query: 1150 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1203
+ L SD+ + W+ ++L+ + LP E F + W V
Sbjct: 1512 ------VAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNANPSRIVNIEPFVMPWQAV 1565
Query: 1204 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1263
Q D K L + ++V+ ++ ESL E + + N I +L E ++
Sbjct: 1566 Q---DVKTNPDMLFAVFEDAVKACTD-ESLTVEERVETCVPLYTNMIVLHQLLERYEAAV 1621
Query: 1264 NLLEKYIKLYP-SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 1322
L + ++ P +C L + A K + D + + A K P+ + ++
Sbjct: 1622 ELCKCLLESCPMNCQLLESLAALYLKMNQQDKARAVWVTAFEKSPQNA---EVFYHTCKF 1678
Query: 1323 YALQNGRHDFAAELMDRWFHSVWKV---QYSQVEI 1354
+ LQN R D + ++ S +K +YS +++
Sbjct: 1679 FILQN-RGDNLLPFLRKFIASFFKPGFEKYSNLDL 1712
|
|
| UNIPROTKB|F6UU41 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 4.3e-07, Sum P(6) = 4.3e-07
Identities = 68/331 (20%), Positives = 132/331 (39%)
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQ-DANKLEGMKKALSLLSRALEADP 1029
+F + + L+ L N V++ L + LNQ D E + AL++L+RALE +
Sbjct: 1344 YFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNDGLCSESLDSALNVLARALENNK 1403
Query: 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089
+ +W YL +F +M +V++ + W +++ + + +
Sbjct: 1404 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAPDYQSFWT-FLHLESTFEEKDYVCERM 1462
Query: 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149
+ L A D + S +L+ L +Q +G + A+ + L A G
Sbjct: 1463 VEFLMGAAKQEASDVL--SFQLLEALLFRVQLHIFTGRCQSALAVLQNALKSANGGI--- 1517
Query: 1150 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1203
+ L D+ + W+ ++L+ + LP E F + W V
Sbjct: 1518 ------VAEYLKTGDRCLAWLAYIHLIEFNVLPSKFYDPSNANPSRIVNTESFVMPWQAV 1571
Query: 1204 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSM 1263
Q D K L+ + ++V+ ++ E+L E + N I +L E ++
Sbjct: 1572 Q---DVKTNPDMLLAVFEDAVKACTD-ENLTVEERVEVCVPLYTNMIALHQLLERYEAAV 1627
Query: 1264 NLLEKYIKLYP-SC--LE-LVLMKARLQKHD 1290
L ++ ++ P +C LE LV + + +HD
Sbjct: 1628 ELCKRLLETCPMNCQLLEALVALYLQTDQHD 1658
|
|
| UNIPROTKB|E9PTM2 E9PTM2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 65/320 (20%), Positives = 121/320 (37%)
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1029
+F S + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1343 YFTSETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1402
Query: 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089
+ +W YL +F +M +V++ Y + +++ + + +
Sbjct: 1403 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAP-DYQSFCTFLHLESTFEEKDYVCERM 1461
Query: 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149
+ L A D + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1462 VEFLMGAAKRETSDIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLA---ND-- 1514
Query: 1150 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1203
+ + L D+ + W+ ++L+ + LP + E F + W
Sbjct: 1515 ----AIVAEYLRTEDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQAA 1570
Query: 1204 QLEDDEKQRAIKLIEMAVNSV--ELYSNGESLEK----ETNLRSAHCFAVNHI----WCM 1253
Q + + E AV + E ++GE E TN+ + H C
Sbjct: 1571 QDVKTNPDLLLAVFEDAVKACTDEALTSGERTEVCLPLYTNMMALHQLLERDEEAVELCK 1630
Query: 1254 AVLNGLECSMNLLEKYIKLY 1273
++L + LLE LY
Sbjct: 1631 SLLESCPTNCQLLETLAALY 1650
|
|
| UNIPROTKB|F1MAP0 F1MAP0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 3.4e-06, Sum P(6) = 3.4e-06
Identities = 65/320 (20%), Positives = 121/320 (37%)
Query: 975 FFRSRNGVLNKLKQVELSNEQCVEMALLI----LNQDANKL-EGMKKALSLLSRALEADP 1029
+F S + L+ L N V++ L + LNQ+ E + AL++L+RALE +
Sbjct: 1343 YFTSETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGLCSESLDSALNVLARALENNK 1402
Query: 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089
+ +W YL +F +M +V++ Y + +++ + + +
Sbjct: 1403 DNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYAP-DYQSFCTFLHLESTFEEKDYVCERM 1461
Query: 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149
+ L A D + S +L+ L +Q +G + A+ + L A ND
Sbjct: 1462 VEFLMGAAKRETSDIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNALKLA---ND-- 1514
Query: 1150 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEK------ELFAIDWPPV 1203
+ + L D+ + W+ ++L+ + LP + E F + W
Sbjct: 1515 ----AIVAEYLRTEDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQAA 1570
Query: 1204 QLEDDEKQRAIKLIEMAVNSV--ELYSNGESLEK----ETNLRSAHCFAVNHI----WCM 1253
Q + + E AV + E ++GE E TN+ + H C
Sbjct: 1571 QDVKTNPDLLLAVFEDAVKACTDEALTSGERTEVCLPLYTNMMALHQLLERDEEAVELCK 1630
Query: 1254 AVLNGLECSMNLLEKYIKLY 1273
++L + LLE LY
Sbjct: 1631 SLLESCPTNCQLLETLAALY 1650
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1652 | |||
| pfam10650 | 23 | pfam10650, zf-C3H1, Putative zinc-finger domain | 5e-07 | |
| pfam08424 | 324 | pfam08424, NRDE-2, NRDE-2, necessary for RNA inter | 2e-04 |
| >gnl|CDD|192649 pfam10650, zf-C3H1, Putative zinc-finger domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-07
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 839 PLCMYELRG-KCNNDECPWQHVK 860
PLC YEL G CN+D+C +QH +
Sbjct: 1 PLCPYELTGGVCNDDDCEFQHFR 23
|
This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger. Length = 23 |
| >gnl|CDD|219834 pfam08424, NRDE-2, NRDE-2, necessary for RNA interference | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 1015 KKALSLLSRALEADPTSEILWITYLLIFYS---NTNSVGKDDMFSYSVKHNEGSYALWLM 1071
+K LS+L +AL+ +P SE L + LL +T+ + K + +K N GS LW
Sbjct: 50 EKKLSILEKALKHNPDSERL-LLGLLEEGEKVWDTDELLKR--WEKVLKENPGSPKLWRK 106
Query: 1072 YIN------SRTPLNHRLDAYD---AALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1122
Y++ S + Y+ AL S +L LFL++ +
Sbjct: 107 YLDFRQGDFSTFSYSKVRKTYEKCLRALKAALNGTITSHQAVPELEEVMLYLFLRLTRFL 166
Query: 1123 CMSGNTEKAI 1132
+G TE A+
Sbjct: 167 RQAGFTELAV 176
|
This is a family of eukaryotic proteins. Eukaryotic cells express a wide variety of endogenous small regulatory RNAs that regulate heterochromatin formation, developmental timing, defence against parasitic nucleic acids, and genome rearrangement. Many small regulatory RNAs are thought to function in nuclei, and in plants and fungi small interfering (si)RNAs associate with nascent transcripts and direct chromatin and/or DNA modifications. This family protein, NRDE-2, is required for small interfering (si)RNA-mediated silencing in nuclei. NRDE-2 associates with the Argonaute protein NRDE-3 within nuclei and is recruited by NRDE-3/siRNA complexes to nascent transcripts that have been targeted by RNA interference, RNAi, the process whereby double-stranded RNA (dsRNA) directs the sequence-specific degradation of mRNA. Length = 324 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1652 | |||
| KOG4839 | 753 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG4839 | 753 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.93 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.87 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.62 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.6 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.54 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.54 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.51 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.46 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.39 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.35 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.34 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.31 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.31 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.28 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.17 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.16 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.15 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.14 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.14 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.09 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.03 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.02 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.02 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.99 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.83 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.82 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.76 | |
| PF10650 | 23 | zf-C3H1: Putative zinc-finger domain; InterPro: IP | 98.75 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.75 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.71 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.67 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.66 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.6 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.59 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.51 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.46 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.36 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.26 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.11 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.03 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.02 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.0 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.0 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.97 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.88 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.88 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.85 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.83 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.79 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.76 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.75 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.74 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.71 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.68 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.67 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.57 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.49 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.49 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.44 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.42 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.41 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.16 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.06 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.02 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.99 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.97 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.86 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.79 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.68 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.64 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.54 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.53 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.32 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 96.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.16 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.13 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.11 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.01 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 95.91 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.82 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.68 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.6 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.51 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.5 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.09 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.5 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 94.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 93.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.6 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.57 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.46 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 93.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 93.29 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 92.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.36 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.3 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.29 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 91.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 91.84 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 91.83 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 91.37 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.34 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 91.23 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.16 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 90.91 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 90.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.12 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 89.8 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.54 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 89.41 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.28 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.68 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 88.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.28 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 88.12 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.93 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.88 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 87.32 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 86.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.5 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 86.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 85.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 85.66 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.25 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 84.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 84.63 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 84.31 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.28 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 81.85 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 81.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 80.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 80.44 |
| >KOG4839 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-73 Score=659.25 Aligned_cols=708 Identities=15% Similarity=0.079 Sum_probs=574.8
Q ss_pred CCCCCCCCCceEEEecCCCCCCcc-ccccccccccccCCceeecCCCCCCCchhHhhhhh-HHHhhhhcccccccCCCCc
Q 000330 44 WFPSSGKNDNLVISFSDDDSGSDT-EDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNL-QQTARNVSKAIPKKLSPSR 121 (1652)
Q Consensus 44 ~~~~~g~~~nlvi~fsdd~sgs~~-e~~~~~~~~~~~~~~~~v~~n~r~~~~~~~k~~~~-~~~~r~~~~~~pkk~~~~~ 121 (1652)
.|+++|.|.++||+|||+|+|+|| ++.|.+++ .. |-.++.|.+++.++...+ |...| .|.++..+..
T Consensus 14 ~~~s~~~n~~~~~NfSd~~~g~es~d~~~~~qs-n~------I~P~~~p~tF~~t~~~~p~~~d~~----~it~~~ls~~ 82 (753)
T KOG4839|consen 14 PYHSPLLNFKSYRNFSDYYRGKESLDLSSVSQS-NM------IEPDQCPCTFDLTGTCNPDDCDWQ----HITDYTLSRK 82 (753)
T ss_pred cCCCccccchhcccCCccccccccCCCcccccc-cc------CCCccCCcccccccCCCCcccccc----cccccccChh
Confidence 388999999999999999999999 56666665 22 344888999999999999 88888 8888877777
Q ss_pred ceeeeccCCCCCCCcCCCCCCccccccccccccccccccc---------cccccccCchhhHHHHHHHHhhhhhhhhhHh
Q 000330 122 TLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSLE---------CGDQVGLRNSKLQDLRQQIALRESELKLKAA 192 (1652)
Q Consensus 122 ~f~~t~~~~~a~s~~~~~~~~~q~s~~~~~~~~~~l~~~e---------~~~~~~~n~~k~qdlr~qialre~elklkaa 192 (1652)
+|.. .+.+. +.-.+.++.+.+....||.| ..+.+.+|.+|+||+. |++|+++ |++++
T Consensus 83 ~F~~-----~~~~~------~sl~~~a~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s--~~~~ss~-~~~~~ 148 (753)
T KOG4839|consen 83 LFQD-----ILSYN------LSLIGCAETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVS--NINESSG-HTPPF 148 (753)
T ss_pred hhhh-----hhhcC------hhhhcCcccCCccccccchhhhHHhhhCCchhhhccchHHHHHHH--hhhhccc-CCCCc
Confidence 8873 23232 24445555555666777776 4455688999999999 9999999 99999
Q ss_pred hccccccc--------ccccccccCccCCCCcCccccccccccccccccCCCcccccccccCCCCCCCCCCCCccCCCcc
Q 000330 193 QQNKDLVI--------DSCENYHLGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKV 264 (1652)
Q Consensus 193 ~q~k~~~~--------vs~~~~~~~~l~~kepd~krlkv~~s~~~~~~~~~~q~~~~~k~~~~~k~~~~~~~~~~~r~~~ 264 (1652)
|..||.+. ++..+.|.+.+||.||.+||++++|.-++ +||..+.+...+.+++|
T Consensus 149 q~~Kd~r~~K~t~~rrp~~~ssdT~~~e~se~pkk~~~~s~~~~~---------~p~~D~~vt~~~~~~~n--------- 210 (753)
T KOG4839|consen 149 QTYKDKRKWKPTFWRRPISDSSDTSDEEQSEGPKKYAFQSENQIN---------VPALDTVVTPDDVRYTN--------- 210 (753)
T ss_pred cchhhhccCCCcccccccccccccchhcccccchhhhccCccccc---------Cccccceeccccccccc---------
Confidence 99999987 77788999999999999999999998533 37777777777777776
Q ss_pred cCccCCCCccccccceeeeccccCCCCCCCCccccccccccccccccccccccccCCccccccccccccCCCCCccCCCC
Q 000330 265 DRSQKDIPRSRIESEIVKWDKQNVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLKNAERIESDPASTAAGCH 344 (1652)
Q Consensus 265 ~~~~k~~p~~r~~~~~vk~~~~~~~~~n~~~~q~d~~~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 344 (1652)
|..|++.. .++++.|.+|.|....+ |.| +++ | .+|+.++++.+|.+..+++ +.|++
T Consensus 211 ------------e~d~~~~l-e~gV~~N~s~~~l~~ks--~v~-~l~-~--~eG~~SsS~~sqgsl~ln~-----~kaaR 266 (753)
T KOG4839|consen 211 ------------ETDDIANL-EAGVLENPSHVQLWLKS--AVK-YLN-Q--NEGECSSSLDSQGSLALNV-----LKAAR 266 (753)
T ss_pred ------------chhHHHhh-ccccccChHHHhhccch--hhh-hhh-h--hcCccchhhhccccceeeh-----hhhhh
Confidence 46677766 67789999999999888 666 344 3 8999999999999977775 88899
Q ss_pred CCCccccccccccccccccccccccCCC--CCCCCCCc---cccccccccccCCCCccccCCCcchhhhHHhhHHHhhHH
Q 000330 345 PSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNN---VHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKE 419 (1652)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~a~l~n~~g~~nv~~h~n~d~~sl~~mee~~dke 419 (1652)
..+.|+ .+|..+. ..|+++++|+| +..++|++ |++.++-.+.|++|.+.++ .+++|.++++.|+-.||+
T Consensus 267 ~le~~K-iD~~~s~---~h~L~~~nGt~~v~~e~~n~~~~~lp~~~~~~~~~~p~st~~p--~~~v~e~~~~~~~g~dk~ 340 (753)
T KOG4839|consen 267 ALENNK-IDNPESW---CHYLRLFNGTKDVVQEMCNTAVEYLPDYQSFWTFLHPESTFEP--KDYVCERMLEFLMGADKQ 340 (753)
T ss_pred HHhhcc-CCCccch---hheeeccCCChhHHHHhhhhhhhcccccccchhccCCCCcCCc--chhhHhhhhhhhhccchh
Confidence 999999 6755554 79999999999 88888887 8889999999999999999 999999999999999999
Q ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHhhhhHHHhHhhhhhcccccceeecCCccccccccccccccccccCCCC
Q 000330 420 LEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHV 499 (1652)
Q Consensus 420 leeaqe~r~~ceieer~alkayrkaqraliean~rc~~ly~kre~~sa~~~s~i~~~s~l~~~~~~~~~~~~g~~~~~~~ 499 (1652)
++++|+..|..|+++|||++.|+++||+++|||+||+++|.+||+. ..+||++|+.|.||-+.| --+|++-++-
T Consensus 341 ~~~~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r~~~---~~~Li~rd~~l~wp~~~p--ts~~~~~Lps- 414 (753)
T KOG4839|consen 341 ETSNILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANRGIV---AEYLITRDRCLAWPAYIP--TSIEFNILPS- 414 (753)
T ss_pred hhHHHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhhchh---hhhheehhhhhcccccCC--cchhhcccCC-
Confidence 9999999999999999999999999999999999999999999954 899999999999995532 2566655544
Q ss_pred CCccccc-cC---CCCcccCCCcCCCCCCCCCCCcccCCCCCCCCcccccCCCCCCCCCCCCCCCccCcCccCccccccC
Q 000330 500 SGNMHLA-PT---STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNG 575 (1652)
Q Consensus 500 ~~~~~~~-p~---~~~~~~~~~~~~n~~~~~s~~~~~~~~~~~~~~~h~~g~nlg~~~~~~~~astse~~~~~~~~~~~~ 575 (1652)
++++ |+ ++|..+.+|++. .++.+..-|+|+|. |..+||||..+|+.++.++.+
T Consensus 415 ---v~~a~~sn~~~sh~~n~E~vv~-----------------~~~~~~~v~~np~~---s~~gas~s~a~t~~s~~te~r 471 (753)
T KOG4839|consen 415 ---VKFADPSNDNPSHIVNTESVVM-----------------PWQAVQDVKTNPDL---SAVGASASKACTDESLATEER 471 (753)
T ss_pred ---CcccccccCCcccccccceecc-----------------CCchhhhhccCCch---hhccccccccCCCcchhHHHH
Confidence 2233 43 899999999976 45556668999996 889999999999999999999
Q ss_pred CCCCCcccCCCcchhhhhccCcccccccchhhhhhhHhhhhccccccccccccccccCCCchHHHHHhhhHHHHHHhccc
Q 000330 576 ISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMR 655 (1652)
Q Consensus 576 ~~~~s~~~~~~~~~~~~~~~~~he~~~~~~~~~~~~~~~~~r~~~~~~~~n~~~s~~~~qd~lllea~lrs~lf~r~g~r 655 (1652)
++.| +..+ .|.++++||+++ |.+|+.+|+|||++
T Consensus 472 Leap-----~l~~--te~iav~heEHp---------------------------------------a~~~~~~~d~l~~l 505 (753)
T KOG4839|consen 472 LEAP-----LLLY--TEMIAVHHEEHP---------------------------------------AERYEAAMDLLKSL 505 (753)
T ss_pred Hhcc-----ccCc--cccccchhhhhh---------------------------------------HHHHHHHHHHHHHH
Confidence 9999 4444 788999998522 89999999999999
Q ss_pred cccCCCCCCCCcCCccccccccccccccccccCCCcCCCccccccccCCCCCCccccccCCccccccchhhccCcccccc
Q 000330 656 TFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHS 735 (1652)
Q Consensus 656 ~~~~~~~~~~~~e~~~~~~~e~~~g~~~~q~~~~~~~~~~~~~~~~dl~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1652)
..+..+ .|++.|+.+.+++| .|.+.+|+.- |=|-+ ++ |...++..+.++++.. ..|++|..
T Consensus 506 ~Es~~g-~c~~~etlV~~~~e--~~~~~~~R~k--v~L~~-----~e--Gk~n~q~~p~e~~~~~---~sI~ens~---- 566 (753)
T KOG4839|consen 506 LESCPG-NCQLLETLVALYLE--TNQHDKARAK--VWLTA-----FE--GKKNPQNAPVEYHMCK---FSILENSG---- 566 (753)
T ss_pred HhcCCc-cchhHHHHHHHHhh--hcchhhhhhH--HHHHh-----hh--ccCCccCCcccchhHH---HHHHhccc----
Confidence 999988 99999999999998 8888888772 11222 23 5557777788887766 66777765
Q ss_pred ccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhhcccccCCcccCCCccccchhhhhccccccccceeccCCCC
Q 000330 736 TYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPD 815 (1652)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~h~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~~~~~~~~~~~~~ 815 (1652)
+.++|+.- .+.+++++.|.||++..|.|+ | +|++.+| +.++-++. |-. +..+.+++.
T Consensus 567 -----~~d~~s~r-ilss~s~~~Pgf~~t~~~dkv--p-~l~~~~g------P~yi~~~~-~y~--~r~~~~f~e----- 623 (753)
T KOG4839|consen 567 -----DNDLPSLR-ILSSASFFKPGFEKTNNLDKV--P-YLLNIPG------PIYIPSRL-CYG--NRDDDMFNE----- 623 (753)
T ss_pred -----cccchhhh-hhhhhhhcCCcccccchhhhc--c-hhhcCCC------chhhhhhh-ccc--chhhHHHhh-----
Confidence 55666543 578899999999999999999 6 7889977 44444322 221 566777755
Q ss_pred ccccccCcccccccccCCCCCCCcceeecccc-cccCCCCchhhhhcccccc--cccccCCCCCCCCCCCCccccccccc
Q 000330 816 IVKGYVGKEMGSYTCNLAIDPLWPLCMYELRG-KCNNDECPWQHVKYFADRN--KNLHDDSDSAGCQIGSTIPQEHCNVG 892 (1652)
Q Consensus 816 ~~~~~~~~~~~S~t~s~~idp~~~lC~fel~G-~CNd~~C~wQH~~d~~~~~--~~~~d~s~l~~~~~~s~~~e~~~~~~ 892 (1652)
+|.+ ..++.-+|+..+|||+|+||+||++| .||+|+|.|||++|+.+++ +-.+|. +. .-+..-++++++..
T Consensus 624 -~Vpy-~~~i~~y~~~lk~~p~~~~c~YE~~ggrCn~d~c~w~hf~df~~~g~~~~~~~~--~~--r~~~~td~v~~~s~ 697 (753)
T KOG4839|consen 624 -QVPY-LWLIYCYCHPLKSSPKETVCAYEAAGGRCNIDQCIWMHFLDFANNGRAAGSRNK--VQ--RFKFFTDLVNRCSV 697 (753)
T ss_pred -hhhh-HhhhheecccccCCcchhHHHHHhccCccCchhhhHHHHHHhhcccchhhhcCc--hh--hhcccchhhhhccc
Confidence 5555 33444444455999999999999997 9999999999999999997 444442 12 22233345544443
Q ss_pred ccccccccccCCCccccccccccchhhhhhhhhhhccCccccccccccccccccCC
Q 000330 893 TKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYP 948 (1652)
Q Consensus 893 ~k~~k~~~~l~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q 948 (1652)
|.+...++++.|||.+..|.|++|.+.|.+|.+-++++-|.|+++++.|.+.+..
T Consensus 698 -k~~~~ldivfs~td~~s~~~~~vdf~~~~~v~~~~H~~~w~~~~s~~pa~s~s~~ 752 (753)
T KOG4839|consen 698 -KVPARLDIVFSSTDYWSYEFHRVDFFYLSCVPKTQHSKTWERFCSVMPANSGSAL 752 (753)
T ss_pred -ccccccccccccccccccccceeeEEEEeeeeHHHHhHHHHHHHhhccccccccc
Confidence 6888999999999999999999999999999999999999999999999887653
|
|
| >KOG4839 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=394.59 Aligned_cols=567 Identities=19% Similarity=0.242 Sum_probs=441.7
Q ss_pred cccccccccCCCCCCCcceeecccccccCCCCchhhhhcccccccccccC-C---CCCCCCCCCCccccccccccccccc
Q 000330 823 KEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDD-S---DSAGCQIGSTIPQEHCNVGTKLSKG 898 (1652)
Q Consensus 823 ~~~~S~t~s~~idp~~~lC~fel~G~CNd~~C~wQH~~d~~~~~~~~~d~-s---~l~~~~~~s~~~e~~~~~~~k~~k~ 898 (1652)
+...++++||+|.|.+++|.|+++|+||+++|.|||..|++++..+|+|+ + +|++|.++++-+++.+++ +|+
T Consensus 38 ~d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~~~F~~~~~~~~sl~~~a~t~~~~~~taSS----ekt 113 (753)
T KOG4839|consen 38 LDLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSRKLFQDILSYNLSLIGCAETSTNEEITASS----EKT 113 (753)
T ss_pred CCCccccccccCCCccCCcccccccCCCCcccccccccccccChhhhhhhhhcChhhhcCcccCCccccccch----hhh
Confidence 57889999999999999999999999999999999999999999999999 4 899999999999998777 899
Q ss_pred ccccCCCccccccccccchhhh-------------------hhhhhhhccCccccccccccccccccCCCCCCcccccCC
Q 000330 899 HDILTPPTYIVGLDILKADSYQ-------------------YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIG 959 (1652)
Q Consensus 899 ~~~l~~pty~v~~d~m~~D~~~-------------------~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~~~~~ 959 (1652)
+.|+ |+++.|+|.|||+. ||+.|+|+| ++|+|+.++++-+++.+|+.+|.+++.-+
T Consensus 114 vsK~----~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~-t~~rrp~~~ssdT~~~e~se~pkk~~~~s 188 (753)
T KOG4839|consen 114 VSKL----FGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKP-TFWRRPISDSSDTSDEEQSEGPKKYAFQS 188 (753)
T ss_pred HHhh----hCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCC-cccccccccccccchhcccccchhhhccC
Confidence 9999 99999999999998 999999999 79999999999999999999999997777
Q ss_pred CCcceec--CCc--cccccccccchhhhhhhhhccccH----HHHHHHHHHHhcccc-cchhhHHH----HHHHH--HHH
Q 000330 960 DGRIECI--GSW--NRQSSFFRSRNGVLNKLKQVELSN----EQCVEMALLILNQDA-NKLEGMKK----ALSLL--SRA 1024 (1652)
Q Consensus 960 d~ri~~~--~~~--~~~~rYF~~~~d~i~~le~~~~d~----qlWLelAl~~Lnq~~-n~~g~ydA----ALdLL--srA 1024 (1652)
+..|.++ |++ +++++| .+++|++.+||++|..+ |+|++.|.++|++.+ +.+...++ |+++| .|+
T Consensus 189 ~~~~~~p~~D~~vt~~~~~~-~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~~sqgsl~ln~~kaaR~ 267 (753)
T KOG4839|consen 189 ENQINVPALDTVVTPDDVRY-TNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSLDSQGSLALNVLKAARA 267 (753)
T ss_pred cccccCccccceeccccccc-ccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhhhccccceeehhhhhhH
Confidence 7766666 665 999999 89999999999999887 999999999999977 66777777 99999 999
Q ss_pred HHhCC-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000330 1025 LEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1025 LEINP-tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1103 (1652)
||.+. ++++.|++|+.++. |++....+|+..|+++-| .|.=||.|..-+.++-.+.++++...++++.+.+.. .
T Consensus 268 le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~lp-~~~~~~~~~~p~st~~p~~~v~e~~~~~~~g~dk~~--~ 342 (753)
T KOG4839|consen 268 LENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYLP-DYQSFWTFLHPESTFEPKDYVCERMLEFLMGADKQE--T 342 (753)
T ss_pred HhhccCCCccchhheeeccC--CChhHHHHhhhhhhhccc-ccccchhccCCCCcCCcchhhHhhhhhhhhccchhh--h
Confidence 99999 99999999999975 777789999999999997 677788999999999998889999999998777766 3
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccc
Q 000330 1104 EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLP 1182 (1652)
Q Consensus 1104 r~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLP 1182 (1652)
..++|++++|+++.-+++-..+|+-..+++ |+++|.+..+. .|+ ..||...|+|.+|..+++ .+.+-.||
T Consensus 343 ~~~~s~~llE~~~~n~~~~~~~~~rs~~lA----~lrnae~~~~r-~~~----~~~Li~rd~~l~wp~~~pts~~~~~Lp 413 (753)
T KOG4839|consen 343 SNILSFQLLEALLFNVQLHIFTGRRSSALA----ILRNAEKSANR-GIV----AEYLITRDRCLAWPAYIPTSIEFNILP 413 (753)
T ss_pred HHHHHHHHhhhchhhhhhhhhhhhhhHHHH----HHHhhHHHhhh-chh----hhhheehhhhhcccccCCcchhhcccC
Confidence 467999999999999999999999888888 66655555443 333 789999999999999999 89999999
Q ss_pred h-HHHhhhh------hhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHH
Q 000330 1183 D-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCM 1253 (1652)
Q Consensus 1183 G-d~y~q~e------~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~l 1253 (1652)
. .+++..+ ..-|-+-.+|+.++.++.+|+ ..++...|.+.+. +++++-+ .++..+..+ ++|...
T Consensus 414 sv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~t----~~s~~te--~rLeap~l~~te~iav~ 486 (753)
T KOG4839|consen 414 SVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKACT----DESLATE--ERLEAPLLLYTEMIAVH 486 (753)
T ss_pred CCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccCC----CcchhHH--HHHhccccCccccccch
Confidence 8 8888777 356778899999999999999 5555443333332 3444433 233222222 332222
Q ss_pred HH---hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHH-HHHHHHH--hCCCCCc--hHHHHHHHHHHH
Q 000330 1254 AV---LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSV-GFEEALI--KWPKGVP--GIQCIWNQYVEY 1323 (1652)
Q Consensus 1254 I~---LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~s-vle~AL~--~~PkNa~--g~~caW~QLIq~ 1323 (1652)
.. .+.-+++++++..+++.||-.|.+ .|++.|++... -..+|. +|.++++ .+|.+.+ +++|.+--+=.-
T Consensus 487 heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~-~~~~R~kv~L~~~eGk~n~q~~p~e~~~~~~sI~ens 565 (753)
T KOG4839|consen 487 HEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQ-HDKARAKVWLTAFEGKKNPQNAPVEYHMCKFSILENS 565 (753)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcc-hhhhhhHHHHHhhhccCCccCCcccchhHHHHHHhcc
Confidence 11 346788999999999999999999 99999988654 566774 9999999 8898888 888887322111
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhccc-CCCCCCC-----CCCCCCcccccccccchhhHHHHHHH--H
Q 000330 1324 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD-MSHSSPE-----STSTSDPEFSVSNRNQMDVMFGYLNL--S 1395 (1652)
Q Consensus 1324 al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkg-ns~i~~e-----s~s~~vSDfy~~~~~q~d~~fa~LGD--~ 1395 (1652)
+ +.++..-. |. +-.++..-..+....+|-+... +.+++.. .-++..-|.+ ..|+ .|++. |
T Consensus 566 ~--~~d~~s~r-il--ss~s~~~Pgf~~t~~~dkvp~l~~~~gP~yi~~~~~y~~r~~~~f---~e~V----py~~~i~~ 633 (753)
T KOG4839|consen 566 G--DNDLPSLR-IL--SSASFFKPGFEKTNNLDKVPYLLNIPGPIYIPSRLCYGNRDDDMF---NEQV----PYLWLIYC 633 (753)
T ss_pred c--cccchhhh-hh--hhhhhcCCcccccchhhhcchhhcCCCchhhhhhhcccchhhHHH---hhhh----hhHhhhhe
Confidence 1 11222211 11 1112222233444455544422 2222111 0112233333 3444 67777 5
Q ss_pred HHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000330 1396 LHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1435 (1652)
Q Consensus 1396 L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1435 (1652)
|..-|+-...+.+-+||.+.+-= ++ ..-.|..|..|-.
T Consensus 634 y~~~lk~~p~~~~c~YE~~ggrC-n~-d~c~w~hf~df~~ 671 (753)
T KOG4839|consen 634 YCHPLKSSPKETVCAYEAAGGRC-NI-DQCIWMHFLDFAN 671 (753)
T ss_pred ecccccCCcchhHHHHHhccCcc-Cc-hhhhHHHHHHhhc
Confidence 66667899999999999999622 22 2345777777754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=253.52 Aligned_cols=321 Identities=18% Similarity=0.208 Sum_probs=273.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1090 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1090 (1652)
.+.++-|..+|+|+|.++|..-.+|...+.+...+++.++....|++||+++|....||+||.+.+|.- +++ ..|+
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv---~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDV---PAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCc---HHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999987 445 8999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000330 1091 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1170 (1652)
Q Consensus 1091 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1170 (1652)
.+|.+++..+ |.. +||||+.++|+..+..++.|.. |++.|.. .++ ..| .|+
T Consensus 605 ~il~~af~~~-pns-------eeiwlaavKle~en~e~eraR~----llakar~-~sg--------------TeR--v~m 655 (913)
T KOG0495|consen 605 VILDQAFEAN-PNS-------EEIWLAAVKLEFENDELERARD----LLAKARS-ISG--------------TER--VWM 655 (913)
T ss_pred HHHHHHHHhC-CCc-------HHHHHHHHHHhhccccHHHHHH----HHHHHhc-cCC--------------cch--hhH
Confidence 9999999999 455 9999999999999999999998 5543322 222 445 899
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000330 1171 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1250 (1652)
Q Consensus 1171 ~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1250 (1652)
+++++.+|.-.- +.+..|.+-|+..|- .+.|+=+|
T Consensus 656 Ks~~~er~ld~~----------------------------eeA~rllEe~lk~fp-----------------~f~Kl~lm 690 (913)
T KOG0495|consen 656 KSANLERYLDNV----------------------------EEALRLLEEALKSFP-----------------DFHKLWLM 690 (913)
T ss_pred HHhHHHHHhhhH----------------------------HHHHHHHHHHHHhCC-----------------chHHHHHH
Confidence 999998887652 566666666544443 56666443
Q ss_pred --HHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000330 1251 --WCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1327 (1652)
Q Consensus 1251 --R~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1327 (1652)
+++...++.+.|+..|...++.||.|+.|||..+.|+++.+ +..|+.+|+++...+|+|+. .|...|+++++.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~----lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL----LWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch----hHHHHHHHHHHc
Confidence 33334779999999999999999999999999999999885 88999999999999999999 888889999999
Q ss_pred CChHHHHHHHHHHHHhhhhccc-------------ccccchhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHH
Q 000330 1328 GRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLN 1393 (1652)
Q Consensus 1328 en~d~ai~Lc~~ff~gia~~Q~-------------~~deALDaLrkg-ns~i~~es~s~~vSDfy~~~~~q~d~~fa~LG 1393 (1652)
|+.+.|..++.+.++.++.++. ++..++|+|++. +.|- .+|.
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph------------------------Vlla 822 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH------------------------VLLA 822 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch------------------------hHHH
Confidence 9999999999998888887775 888999999987 4442 5778
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000330 1394 LSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1439 (1652)
Q Consensus 1394 D~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~ 1439 (1652)
.+..+|.+.++++|.+||++|++.+|++ =.+|-.+--|-...|+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCC
Confidence 8888888999999999999999999998 6777666666556563
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-19 Score=212.16 Aligned_cols=379 Identities=15% Similarity=0.030 Sum_probs=276.0
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1067 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1067 (1652)
+.+.++..|..+++++ +++.|+..|+++++++|.++++|+.++.+|...++-+++..+|++|++..|++..
T Consensus 21 ~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKN-----KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcC-----ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 5567888898888874 5799999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1147 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1147 (1652)
++..|...+ .|++|+..+.+.....++.. .+++..+...|...|++++|+..+.++.. .....
T Consensus 96 ~a~~~~~~g--------~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 158 (899)
T TIGR02917 96 LARAYLLQG--------KFQQVLDELPGKTLLDDEGA-------AELLALRGLAYLGLGQLELAQKSYEQALA--IDPRS 158 (899)
T ss_pred HHHHHHHCC--------CHHHHHHhhcccccCCchhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 677788888 88999999976654332333 67889999999999999999999988875 33223
Q ss_pred cccchHHHHHHhhccCCcchh--hHHHH---H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHH
Q 000330 1148 RHSLFLSDILTCLTISDKLIF--WVCCV---Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1220 (1652)
Q Consensus 1148 E~~lSLsKi~~YLt~sDR~~A--WL~~i---Y--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA 1220 (1652)
. ...+.....++..++-..| ++... . ......+.|.++...|...+|... +.++++.+|++...++.+|
T Consensus 159 ~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 159 L-YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA---YRKAIALRPNNPAVLLALA 234 (899)
T ss_pred h-hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHhhCCCCHHHHHHHH
Confidence 3 4455566666666665444 22222 1 233455678889999999999998 8899999999988888876
Q ss_pred HHHHhhhcCCcchhhhhhhchhhHhH----HHHHHHH--HHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCC
Q 000330 1221 VNSVELYSNGESLEKETNLRSAHCFA----VNHIWCM--AVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGD 1293 (1652)
Q Consensus 1221 ~dYY~~~~ndesla~~~~~kt~~~fK----LN~IR~l--I~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~ 1293 (1652)
.-++. .|+-+.+...-.++....| ..+++.+ ...++.+.|+.+|.++++..|..... .+.+..+...+..+
T Consensus 235 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIE--AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 44544 4444433332111111111 1112222 23679999999999999999998776 33333223333377
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH------------Hhhhhccc-ccccchhhhcc
Q 000330 1294 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF------------HSVWKVQY-SQVEISDPLVA 1360 (1652)
Q Consensus 1294 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff------------~gia~~Q~-~~deALDaLrk 1360 (1652)
+|+..|++++...|++.. ++..++......|++++|+.++.+.. .+..+... +.++|++.+++
T Consensus 313 ~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQ----ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHhCCCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999988 78888899999999999999988732 23333333 77888888876
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000330 1361 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1361 gns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
.....+ . ..+++ ..++.++.. .|++++|...|+++++..|..
T Consensus 389 ~~~~~~-----~-~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 389 ATELDP-----E-NAAAR-----------TQLGISKLS--QGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred HHhcCC-----C-CHHHH-----------HHHHHHHHh--CCChHHHHHHHHHHHhhCCcc
Confidence 532211 0 12222 556677777 899999999999999888876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-17 Score=201.35 Aligned_cols=412 Identities=13% Similarity=0.021 Sum_probs=278.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1087 (1652)
|+++.|+..|..+++.+|+...+++.++.+|...+.-.++..+|+++++..|.+.. ++.+|+..+ .++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--------~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG--------RVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC--------CHH
Confidence 56788888888888888888888888888888888888888888888888887765 556677777 778
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1167 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1167 (1652)
+|+..|.++.... +.. .+++..+..+|...|++++|+..+.+... ....+. .........|+..++...
T Consensus 347 ~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 347 EAIATLSPALGLD-PDD-------PAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENA-AARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHhCCChHH
Confidence 8888888887776 343 67788888889999999999998777764 222222 223333445555555543
Q ss_pred h--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhc
Q 000330 1168 F--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1240 (1652)
Q Consensus 1168 A--WL~~iY-----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~k 1240 (1652)
| .+.... ........+..|...|..+++..+ +....+..|+++.....+|.-|.. .|+-..+...-.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA---AKKLEKKQPDNASLHNLLGAIYLG--KGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCcHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3 111111 111223345667778888888887 777777788877777777533443 4444433333222
Q ss_pred hhhHh------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchH
Q 000330 1241 SAHCF------AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGI 1313 (1652)
Q Consensus 1241 t~~~f------KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~ 1313 (1652)
+.... -.++.+.+...++.+.|+.+|.++++.+|.++..+...+.+ ...+..++|+..|++++...|++..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-- 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--
Confidence 11111 11334444457789999999999999999998883333332 2333478889999999999999888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccc
Q 000330 1314 QCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVS 1380 (1652)
Q Consensus 1314 ~caW~QLIq~al~~en~d~ai~Lc~~ff~------------gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~ 1380 (1652)
.|..++......|++++|+.++++... +..+... +.++|++.+++.....+. ....
T Consensus 569 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~--- 637 (899)
T TIGR02917 569 --PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALA--- 637 (899)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHH---
Confidence 888889999999999999999887332 2222222 777888888765322110 0122
Q ss_pred cccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------
Q 000330 1381 NRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------ 1454 (1652)
Q Consensus 1381 ~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------ 1454 (1652)
+..++.++.+ .|++++|...|+++++.+|++ ..++...+..+...+ +.++|..+-. ++.
T Consensus 638 --------~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~--~~~~~~~~~ 702 (899)
T TIGR02917 638 --------LLLLADAYAV--MKNYAKAITSLKRALELKPDN--TEAQIGLAQLLLAAK-RTESAKKIAK--SLQKQHPKA 702 (899)
T ss_pred --------HHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHH--HHHhhCcCC
Confidence 2678888888 999999999999999999998 778888887776544 4666655333 222
Q ss_pred -HHHHhhhcccccccc--cchhhh
Q 000330 1455 -NSYLDRARSLPYLKL--LPRQFI 1475 (1652)
Q Consensus 1455 -sTYLDTAWILf~~~~--lAR~YI 1475 (1652)
..|..-+++++..+. +|..+.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHH
Confidence 122222677777777 565555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-15 Score=193.33 Aligned_cols=589 Identities=10% Similarity=0.005 Sum_probs=364.5
Q ss_pred cccccccccchh--hhh----hh-hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH-------
Q 000330 970 NRQSSFFRSRNG--VLN----KL-KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW------- 1035 (1652)
Q Consensus 970 ~~~~rYF~~~~d--~i~----~l-e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW------- 1035 (1652)
-+|+||...... ... ++ .-.|.+.+.+..++...+.++ +++.|...|.++++++|+++.++
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-----~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-----DSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 366777763332 222 22 233667788888888877664 56999999999999999999986
Q ss_pred ---------HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcch
Q 000330 1036 ---------ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1106 (1652)
Q Consensus 1036 ---------y~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~ 1106 (1652)
..++.++...+..+++...|+++++.+|++..+...|...-....+ .+++|+..|+++.+.+ |+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g---~~~~A~~~L~~ll~~~-P~~-- 180 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPA---QRPEAINQLQRLNADY-PGN-- 180 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCc---cHHHHHHHHHHHHHhC-CCC--
Confidence 4556678888999999999999999999998866655543211222 5699999999999998 565
Q ss_pred hhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-c------------ccchHHHHHHhhccCCcch-hhHHH
Q 000330 1107 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R------------HSLFLSDILTCLTISDKLI-FWVCC 1172 (1652)
Q Consensus 1107 ~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s-E------------~~lSLsKi~~YLt~sDR~~-AWL~~ 1172 (1652)
.++.+.+..++...|+++.|+..+.++......... . ..-.+..+..|+..-.... +--+.
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 789999999999999999999999887641100000 0 0001111222222111100 00000
Q ss_pred HHH---------HHh-hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchh
Q 000330 1173 VYL---------VIY-RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1242 (1652)
Q Consensus 1173 iYl---------lrY-rvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~ 1242 (1652)
..+ ..| ..+.|..+...|...+|... +.++++.+|+++.++..+|.-|+. .++-..+...-.++.
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~---l~~aL~~~P~~~~a~~~Lg~~~~~--~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE---LQQAVRANPKDSEALGALGQAYSQ--QGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 000 001 12347788888999999999 999999999999999999755555 455444444422222
Q ss_pred hHhHH--------------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHH
Q 000330 1243 HCFAV--------------------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFE 1300 (1652)
Q Consensus 1243 ~~fKL--------------------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle 1300 (1652)
...|- .....+...++.++|+.+|.++++..|.+... .|...|+..+ ..++|+..|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-DYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 22211 11112233669999999999999999999988 3444444444 4889999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------------Hhhhh-cccccccchhhh
Q 000330 1301 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF---------------------HSVWK-VQYSQVEISDPL 1358 (1652)
Q Consensus 1301 ~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff---------------------~gia~-~Q~~~deALDaL 1358 (1652)
+|+.++|++.. +|..+..... .++.++|+..+..+- ++-.+ .+.+.++|+..+
T Consensus 410 ~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 410 QALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998 7777776654 568898887765421 11111 123778888888
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000330 1359 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1438 (1652)
Q Consensus 1359 rkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1438 (1652)
++....-+. ...++ -.++.+|++ .|++++|...|+++++..|.+ ...+..++.|+...+
T Consensus 485 ~~Al~~~P~------~~~~~-----------~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 485 RQRLALDPG------SVWLT-----------YRLAQDLRQ--AGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHhCCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCC
Confidence 876332110 01222 567778888 999999999999999999988 677777787765433
Q ss_pred CCCCcccc-------------hhhhHHHH--HHHHhhhcccccccc--cchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000330 1439 SEPKEGAP-------------ISWQLKLL--NSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1501 (1652)
Q Consensus 1439 ~dL~KAeq-------------MS~~~KtV--sTYLDTAWILf~~~~--lAR~YI~~i~k~rv~~liDqaL~~~S~dss~~ 1501 (1652)
. .++|.. |......+ ..+|..|.++...++ +|..++ + ..|.+ ...
T Consensus 544 ~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l------------~--~~p~~---~~~ 605 (1157)
T PRK11447 544 R-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL------------R--QQPPS---TRI 605 (1157)
T ss_pred C-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH------------H--hCCCC---chH
Confidence 2 222211 11000000 123333444555554 444444 1 11211 111
Q ss_pred HHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000330 1502 NLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1581 (1652)
Q Consensus 1502 nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~ 1581 (1652)
...|-.|+ + +.++...=..+.+.+++.-|.|...-+..+.++....+ ...+..... .+...-
T Consensus 606 ~~~La~~~----~--~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~------~~eA~~~l~------~ll~~~ 667 (1157)
T PRK11447 606 DLTLADWA----Q--QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD------LAAARAQLA------KLPATA 667 (1157)
T ss_pred HHHHHHHH----H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHH------HHhccC
Confidence 12222232 1 11122334567888889999998888888887765444 111221111 111111
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccc------hHHHHHHHHhhhcccCChHHHHHHH
Q 000330 1582 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPF------SIKLWKCYYDLSKTKGDLNTIVKAA 1644 (1652)
Q Consensus 1582 pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPf------s~~LW~~y~~~~~~~g~~~~ive~a 1644 (1652)
|- ...+|...|.++..+ |.-+-+..+|++|+...|= .+.+++..-.+....|..+..++.-
T Consensus 668 p~-~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAAL-GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CC-ChHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 224566666666554 4444458899999987652 3456776677778888886555553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-14 Score=186.76 Aligned_cols=293 Identities=10% Similarity=-0.037 Sum_probs=215.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1091 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1091 (1652)
|+++.|+..|.+||+++|+++++++.++.+|+..++..++..++++||+++|.|.++.++....+ .|++|+.
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~--------~~~kA~~ 129 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIP--------VEVKSVT 129 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhc--------cChhHHH
Confidence 67899999999999999999999999999999999999999999999999999999877765554 8899999
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHH--------HHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccC
Q 000330 1092 VLCRCASASDGDEMHASACILDLFLQMLQC--------FCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTIS 1163 (1652)
Q Consensus 1092 aLe~las~~~~Dr~~~Sa~iLDILL~LvqL--------Y~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~s 1163 (1652)
+|+++++.+ |++ .|+++.++.+ |.+.+...+||. .+++. .++... -+.|.+.++|+.++
T Consensus 130 ~ye~l~~~~-P~n-------~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~--~~~~~~-vL~L~~~rlY~~l~ 196 (987)
T PRK09782 130 TVEELLAQQ-KAC-------DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA--ASPEGK-TLRTDLLQRAIYLK 196 (987)
T ss_pred HHHHHHHhC-CCC-------hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC--CCCCcH-HHHHHHHHHHHHHh
Confidence 999999999 787 9999999998 999988888887 55554 443333 48999999999999
Q ss_pred Ccc-hh----hHHHHH--HHHhhccchHHHhhh-hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhh
Q 000330 1164 DKL-IF----WVCCVY--LVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEK 1235 (1652)
Q Consensus 1164 DR~-~A----WL~~iY--llrYrvLPGd~y~q~-e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~ 1235 (1652)
|-. .. .|+..+ ...|...++++|+++ +. +++..+ +...++.+|.-..++ +++|.. .|+.+.+.
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al---~~~~lk~d~~l~~al----a~~yi~-~G~~~~A~ 267 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL---QSQGIFTDPQSRITY----ATALAY-RGEKARLQ 267 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH---hchhcccCHHHHHHH----HHHHHH-CCCHHHHH
Confidence 943 33 566655 777888899999995 66 888888 666666555555544 356665 77777766
Q ss_pred hhhhchhhHhHH-------------------------------HHHH-HH------HHhcCHHHHHHHHHHHHHhCCCch
Q 000330 1236 ETNLRSAHCFAV-------------------------------NHIW-CM------AVLNGLECSMNLLEKYIKLYPSCL 1277 (1652)
Q Consensus 1236 ~~~~kt~~~fKL-------------------------------N~IR-~l------I~LEDse~A~~LfdklLk~~P~d~ 1277 (1652)
..=.+...+++. ++.+ ++ +..+++..+. +++...|.+.
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 343 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ----KLLATLPANE 343 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH----HHhcCCCcch
Confidence 551122222211 1000 00 0011333222 3455556665
Q ss_pred hHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000330 1278 ELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1342 (1652)
Q Consensus 1278 eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~ 1342 (1652)
-+.+-.+++...+.--++...|.......|.+.. .=.|+.=.++++|+.++|.++.+..|.
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~----~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEPANLT----RLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 4455555543323355777888888888898888 666667789999999999999999665
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-15 Score=192.11 Aligned_cols=359 Identities=8% Similarity=-0.033 Sum_probs=242.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------------------HHHHH
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------------LWLMY 1072 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------------------LwlmY 1072 (1652)
.|+++.|...|.++|+++|+++.+|+.++.+|.+.+..+++.++|++|++.+|++.. ++..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999998642 12345
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccch
Q 000330 1073 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1152 (1652)
Q Consensus 1073 Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lS 1152 (1652)
+..+ .|++|+..|.++.+.. |+. .+.++.|..+|...|++++|++.+.+... +...+. ...
T Consensus 362 ~~~g--------~~~eA~~~~~~Al~~~-P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~--~~p~~~-~a~ 422 (1157)
T PRK11447 362 LKAN--------NLAQAERLYQQARQVD-NTD-------SYAVLGLGDVAMARKDYAAAERYYQQALR--MDPGNT-NAV 422 (1157)
T ss_pred HHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHH
Confidence 5555 7899999999999888 454 67888999999999999999998888775 333332 222
Q ss_pred HHHHHHhhccCCcchh--hHHHH--------------H-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000330 1153 LSDILTCLTISDKLIF--WVCCV--------------Y-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1215 (1652)
Q Consensus 1153 LsKi~~YLt~sDR~~A--WL~~i--------------Y-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalA 1215 (1652)
......|... +...| ++... . .-.| ...+.++...+...+|... +.+.++.+|+++.+
T Consensus 423 ~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~-~~~a~~~~~~g~~~eA~~~---~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 423 RGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRL-AQQAEALENQGKWAQAAEL---QRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH-HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHH
Confidence 2222334322 22222 22100 0 0011 1245666677777777777 77777777777777
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhH-------------------------------------------------
Q 000330 1216 LIEMAVNSVELYSNGESLEKETNLRSAHCFA------------------------------------------------- 1246 (1652)
Q Consensus 1216 L~smA~dYY~~~~ndesla~~~~~kt~~~fK------------------------------------------------- 1246 (1652)
++.+|.-|+. .|+...+...-.++....|
T Consensus 498 ~~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 498 TYRLAQDLRQ--AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 7777544443 3444333332111111001
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000330 1247 -VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1324 (1652)
Q Consensus 1247 -LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1324 (1652)
+.....+...++.++|+.++. .+|.+..+ ..++..+...+..++|+..|++++..+|+|+. +|+.+++..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~----a~~~la~~~ 647 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD----ARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Confidence 111222233446666666554 68999988 44444445555599999999999999999999 999999999
Q ss_pred HHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHH
Q 000330 1325 LQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1391 (1652)
Q Consensus 1325 l~~en~d~ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~ 1391 (1652)
...|++++|+..+++ ...+..+.+. +.++|+..+++.....+.......... ++..
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~-----------~~~~ 716 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL-----------VLRD 716 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH-----------HHHH
Confidence 999999999999987 2234434333 888899988876443211100000111 1244
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHh
Q 000330 1392 LNLSLHRLLQNDWNEARLAIDAALK 1416 (1652)
Q Consensus 1392 LGD~L~q~Lqg~~~EAfaAYDKALk 1416 (1652)
++.++.. +|+.++|...|.+||.
T Consensus 717 ~a~~~~~--~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 717 AARFEAQ--TGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHh
Confidence 5677777 9999999999999996
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-13 Score=165.24 Aligned_cols=406 Identities=19% Similarity=0.176 Sum_probs=264.4
Q ss_pred CCCccccccccccchhhhhhhhhhhccCccccccccccccccccCCCCCCccc--ccCCCCcceec---CCccccccccc
Q 000330 903 TPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADL--SLIGDGRIECI---GSWNRQSSFFR 977 (1652)
Q Consensus 903 ~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~--~~~~d~ri~~~---~~~~~~~rYF~ 977 (1652)
..||++-....++--.+++||+|+--|. |...=.|+-..+-..+-... ..+-.|+=+++ |-|=+..|-+-
T Consensus 256 m~p~~~~dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp 330 (913)
T KOG0495|consen 256 MIPTSGGDLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHP 330 (913)
T ss_pred cCCCccCcHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCC
Confidence 4688888888888778889999998774 44444444443322221111 11112222222 33433344433
Q ss_pred cchh--h-hhhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHH
Q 000330 978 SRNG--V-LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1054 (1652)
Q Consensus 978 ~~~d--~-i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~em 1054 (1652)
.+.. + .+-+.--|+++.+|++.|..- +. ...=.-+|.+|||..|++..+|-.-..+ ..++.+.-|
T Consensus 331 ~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE--~~------~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~daril 398 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFLPTSVRLWLKAADLE--SD------TKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARIL 398 (913)
T ss_pred hHHHHHHHHHHHHhCCCChhhhhhHHhhh--hH------HHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHH
Confidence 2221 1 223444478888888877432 11 1334578999999999999999987666 556669999
Q ss_pred HHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000330 1055 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1134 (1652)
Q Consensus 1055 lekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1134 (1652)
+++||+.+|.+..||+-|.+.+ -|+.|..+|...-+.-|.+ -+||+.-..|.-.+|++++.-..
T Consensus 399 L~rAveccp~s~dLwlAlarLe--------tYenAkkvLNkaRe~iptd--------~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 399 LERAVECCPQSMDLWLALARLE--------TYENAKKVLNKAREIIPTD--------REIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHHHhccchHHHHHHHHHHH--------HHHHHHHHHHHHHhhCCCC--------hhHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999 9999999997777777667 49999999999999999988886
Q ss_pred HHhhcc-cccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHH
Q 000330 1135 ISRLLI-PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA 1213 (1652)
Q Consensus 1135 i~rLEq-~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdna 1213 (1652)
|+|=.. --.+|.. +. + -.||...-..+--. +.--+-.| +
T Consensus 463 i~rgl~~L~~ngv~--------------i~-r-dqWl~eAe~~e~ag----------sv~TcQAI--------------i 502 (913)
T KOG0495|consen 463 IDRGLSELQANGVE--------------IN-R-DQWLKEAEACEDAG----------SVITCQAI--------------I 502 (913)
T ss_pred HHHHHHHHhhccee--------------ec-H-HHHHHHHHHHhhcC----------ChhhHHHH--------------H
Confidence 665432 1122210 00 0 02555443211100 00000000 1
Q ss_pred HHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000330 1214 IKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1293 (1652)
Q Consensus 1214 lAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1293 (1652)
.+.+..+ +-+++-...-......|-|.+ -+++++..|-.+|+.+|..-.|||.++++++.++..
T Consensus 503 ~avigig-------vEeed~~~tw~~da~~~~k~~---------~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 503 RAVIGIG-------VEEEDRKSTWLDDAQSCEKRP---------AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHHHhhc-------cccchhHhHHhhhHHHHHhcc---------hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcH
Confidence 1222211 011110000012222333333 677888899999999999999999999998888777
Q ss_pred ccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccccchhhhc
Q 000330 1294 LSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLV 1359 (1652)
Q Consensus 1294 ~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~-------------~~deALDaLr 1359 (1652)
++. +.|++|+...|+-.- .|++|+..-|..|+...|..|+...|...+.+-. ..++|-+.|.
T Consensus 567 Esl~Allqkav~~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHhCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 777 889999999999888 9999999999999999999999887776655433 5566666666
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000330 1360 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1360 kgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
++-+- ++..- .+|--+-+.|.+++.+||....|.||+.-|+=
T Consensus 643 kar~~---------------sgTeR-----v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 643 KARSI---------------SGTER-----VWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHhcc---------------CCcch-----hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 55221 11222 45666677778899999999999999888864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=168.60 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1085 (1652)
..|+|+.|+..|.+||+++|+ +.+|+.++..|..++.-.++.+.|++|++++|++.. ++..|...+ .
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg--------~ 209 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG--------K 209 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------C
Confidence 347789999999999999996 789999999999999999999999999999999876 677888888 8
Q ss_pred HHHHHHHHHHh
Q 000330 1086 YDAALSVLCRC 1096 (1652)
Q Consensus 1086 YdkAI~aLe~l 1096 (1652)
|++|+..|...
T Consensus 210 ~~eA~~~~~~~ 220 (615)
T TIGR00990 210 YADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999888544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-13 Score=167.36 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=119.7
Q ss_pred hHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCH---
Q 000330 1183 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGL--- 1259 (1652)
Q Consensus 1183 Gd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDs--- 1259 (1652)
+..+...|...+|... +.+.+..+|+.+.++..+|.-|+. .++.
T Consensus 219 ~~~l~~~g~~~eA~~~---~~~al~~~p~~~~~~~~Lg~~l~~------------------------------~G~~~eA 265 (656)
T PRK15174 219 VDTLCAVGKYQEAIQT---GESALARGLDGAALRRSLGLAYYQ------------------------------SGRSREA 265 (656)
T ss_pred HHHHHHCCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHH------------------------------cCCchhh
Confidence 4445556666666666 566666666666555555422332 2222
Q ss_pred -HHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Q 000330 1260 -ECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1337 (1652)
Q Consensus 1260 -e~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc 1337 (1652)
.+|+.+|+++++..|.++.+ ..++..+...+..++|+..|++++...|++.. +|..|.....+.|++++|+..+
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~----a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY----VRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHH
Confidence 25788899999999998888 34444444444478888889999999999888 7888888888888888888877
Q ss_pred HHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000330 1338 DRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1417 (1652)
Q Consensus 1338 ~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1417 (1652)
++.... .|. ....+ ..++.+|.+ .|+.++|..+|+++|..
T Consensus 342 ~~al~~-------------------~P~--------~~~~~-----------~~~a~al~~--~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 342 VQLARE-------------------KGV--------TSKWN-----------RYAAAALLQ--AGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHh-------------------Ccc--------chHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHh
Confidence 542220 010 01112 456778888 99999999999999999
Q ss_pred ccC---CcHHHHHHHHHHHHhc
Q 000330 1418 AAS---EHFKHCVREHAMLLLI 1436 (1652)
Q Consensus 1418 np~---N~~i~cLNNYAYFLS~ 1436 (1652)
.|+ ..|..+...|.-++..
T Consensus 382 ~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 382 RASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred ChhhchhhHHHHHHHHHHHHHh
Confidence 885 4556666777766654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-13 Score=170.69 Aligned_cols=173 Identities=8% Similarity=-0.107 Sum_probs=118.7
Q ss_pred HHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000330 1254 AVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1330 (1652)
Q Consensus 1254 I~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1330 (1652)
...++.++|+..|+++++.. |..+.+++..+|+..++ +++|+..|++++...|.+.......+.+|....++.+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~-~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQ-PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 34568999999999999996 55556678778888776 999999999999999987432234566667677899999
Q ss_pred HHHHHHHHHHHHhhhhc----------------------------ccccccchhhhcccCCCCCCCCCCCCCcccccccc
Q 000330 1331 DFAAELMDRWFHSVWKV----------------------------QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNR 1382 (1652)
Q Consensus 1331 d~ai~Lc~~ff~gia~~----------------------------Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~ 1382 (1652)
++|+.++.+.....+.. +.+.++|++++++.....+. ..+.+
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~---- 396 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLR---- 396 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH----
Confidence 99999988755442210 11666777777765322111 01211
Q ss_pred cchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000330 1383 NQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1449 (1652)
Q Consensus 1383 ~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1449 (1652)
..++.++.. .|+.++|...|++||..+|++ ...+-..|+ ..+...++++|+++=.
T Consensus 397 -------~~lA~l~~~--~g~~~~A~~~l~~al~l~Pd~--~~l~~~~a~-~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 397 -------IDYASVLQA--RGWPRAAENELKKAEVLEPRN--INLEVEQAW-TALDLQEWRQMDVLTD 451 (765)
T ss_pred -------HHHHHHHHh--cCCHHHHHHHHHHHHhhCCCC--hHHHHHHHH-HHHHhCCHHHHHHHHH
Confidence 444555555 788888888888888888888 666666666 3444445666666444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-12 Score=157.61 Aligned_cols=352 Identities=12% Similarity=-0.030 Sum_probs=200.6
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1067 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1067 (1652)
+...|+.+|.-++.. |+++.|+..+.++|+++|+.+.+|+.++..|...+.-+++...|..+..+.+.+..
T Consensus 159 ~~~~~~n~a~~~~~l-----~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 159 DPVYYSNRAACHNAL-----GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred chHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 356777777776665 56799999999999999999999999999999999988887777665544432211
Q ss_pred ------------------------------HHHHHHhcCC-----------C----cc-------------cchhhHHHH
Q 000330 1068 ------------------------------LWLMYINSRT-----------P----LN-------------HRLDAYDAA 1089 (1652)
Q Consensus 1068 ------------------------------LwlmYInsr~-----------s----ld-------------drl~~YdkA 1089 (1652)
++.++...+. . +. .....|++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 1111100000 0 00 001257888
Q ss_pred HHHHHHhhhcC--CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000330 1090 LSVLCRCASAS--DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1167 (1652)
Q Consensus 1090 I~aLe~las~~--~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1167 (1652)
+.+|..+.... .+.. ...+..+..+|...|++++|+..+.+... ..|. .. .
T Consensus 314 ~~~~~~al~~~~~~~~~-------a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----l~P~-~~--------------~ 366 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKE-------AIALNLRGTFKCLKGKHLEALADLSKSIE-----LDPR-VT--------------Q 366 (615)
T ss_pred HHHHHHHHhcCCCChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cH--------------H
Confidence 88888877643 1232 56778888889999999999997777664 2331 00 0
Q ss_pred hhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH
Q 000330 1168 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV 1247 (1652)
Q Consensus 1168 AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL 1247 (1652)
+| ...|.++...|...+|... +.++++.+|+++.+++.+|.-|+. .|+-+.+.....++....|-
T Consensus 367 ~~----------~~la~~~~~~g~~~eA~~~---~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 367 SY----------IKRASMNLELGDPDKAEED---FDKALKLNSEDPDIYYHRAQLHFI--KGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HH----------HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCcc
Confidence 11 1234555666777777777 667777777777777666533332 33333333222222111111
Q ss_pred ------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH-HhhcccCCccHHHHHHHHHhCCCCCchHH--HHHH
Q 000330 1248 ------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQ--CIWN 1318 (1652)
Q Consensus 1248 ------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~--caW~ 1318 (1652)
++...+..+++.+.|+.+|+++++..|.+.+++...+. +...+..++|+..|++|+.++|++.+.+. ..|.
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 11111222456666666666666666666666222222 22222255666666666666666544111 1111
Q ss_pred HHH-HHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHH
Q 000330 1319 QYV-EYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLH 1397 (1652)
Q Consensus 1319 QLI-q~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~ 1397 (1652)
..+ .+....+++++|+.++++.+. ..+ +. ...+..||.+++
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~-------------------l~p-----------~~--------~~a~~~la~~~~ 553 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI-------------------IDP-----------EC--------DIAVATMAQLLL 553 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-------------------cCC-----------Cc--------HHHHHHHHHHHH
Confidence 111 111123555555555544211 011 00 012256777888
Q ss_pred HhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000330 1398 RLLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1432 (1652)
Q Consensus 1398 q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAY 1432 (1652)
+ .|+++||..+|++|++..+.. ...++.+.|
T Consensus 554 ~--~g~~~eAi~~~e~A~~l~~~~--~e~~~a~~~ 584 (615)
T TIGR00990 554 Q--QGDVDEALKLFERAAELARTE--GELVQAISY 584 (615)
T ss_pred H--ccCHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 8 999999999999999988865 444444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-12 Score=158.41 Aligned_cols=359 Identities=9% Similarity=0.017 Sum_probs=249.9
Q ss_pred ccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000330 989 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1067 (1652)
Q Consensus 989 ~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~- 1067 (1652)
.+...+.|..+|..+.+.+. ++.|+.+|.++|+.+|.++.+|+.++.++...+...++.++++++++..|++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~-----~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~ 119 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQ-----WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANL 119 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45666778888888877754 699999999999999999999999999999999999999999999999999876
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc--
Q 000330 1068 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT-- 1143 (1652)
Q Consensus 1068 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al-- 1143 (1652)
++.+|...+ .+++|+.+|+++.+.. |+. .++++.+..++...|..++|+..++++....-
T Consensus 120 ~~la~~l~~~g--------~~~~Al~~l~~al~~~-P~~-------~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~ 183 (765)
T PRK10049 120 LALAYVYKRAG--------RHWDELRAMTQALPRA-PQT-------QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK 183 (765)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence 566677777 8899999999999998 566 88989999999999999999998877664000
Q ss_pred CCCCcccchHHHHHHhhccCCcc--------hh-----hHHHH-------H--HHHhhcc-chHHHhhhhhhhhhhccCC
Q 000330 1144 GSNDRHSLFLSDILTCLTISDKL--------IF-----WVCCV-------Y--LVIYRKL-PDAVLQLLECEKELFAIDW 1200 (1652)
Q Consensus 1144 ~g~sE~~lSLsKi~~YLt~sDR~--------~A-----WL~~i-------Y--llrYrvL-PGd~y~q~e~~KEAf~I~W 1200 (1652)
.... .......++.++...... .| .+... + ....+.. .+.+ ...+..++|...
T Consensus 184 ~~l~-~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~-- 259 (765)
T PRK10049 184 RDLE-ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISE-- 259 (765)
T ss_pred HHHH-HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHH--
Confidence 0000 001223344444332210 01 11111 0 1111111 3334 455788889888
Q ss_pred CCcccchhh---HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh----------HhHHHHHHHHHHhcCHHHHHHHHH
Q 000330 1201 PPVQLEDDE---KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH----------CFAVNHIWCMAVLNGLECSMNLLE 1267 (1652)
Q Consensus 1201 ~y~~vlk~E---PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~----------~fKLN~IR~lI~LEDse~A~~Lfd 1267 (1652)
|..+++.. |+.+...+ | ++|-. .++.+.+...-.++.. .....+...+...++.++|+.+++
T Consensus 260 -~~~ll~~~~~~P~~a~~~l--a-~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 260 -YQRLKAEGQIIPPWAQRWV--A-SAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred -HHHhhccCCCCCHHHHHHH--H-HHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88888774 66655543 3 33333 5666655554222211 111122223334679999999999
Q ss_pred HHHHhCCCch---------------hH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChH
Q 000330 1268 KYIKLYPSCL---------------EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHD 1331 (1652)
Q Consensus 1268 klLk~~P~d~---------------eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d 1331 (1652)
++++..|... ++ .+.+..+...+..++|+..|++++...|+|.. +|+.++......|+++
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQARGWPR 410 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCHH
Confidence 9999987432 23 44555555555689999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000330 1332 FAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1411 (1652)
Q Consensus 1332 ~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAY 1411 (1652)
+|+.++++ ++.. .|- ..+++ -.++..+.. .|++++|...+
T Consensus 411 ~A~~~l~~--------------al~l-----~Pd--------~~~l~-----------~~~a~~al~--~~~~~~A~~~~ 450 (765)
T PRK10049 411 AAENELKK--------------AEVL-----EPR--------NINLE-----------VEQAWTALD--LQEWRQMDVLT 450 (765)
T ss_pred HHHHHHHH--------------HHhh-----CCC--------ChHHH-----------HHHHHHHHH--hCCHHHHHHHH
Confidence 99998865 1111 010 11222 344445555 89999999999
Q ss_pred HHHHhhccCC
Q 000330 1412 DAALKAAASE 1421 (1652)
Q Consensus 1412 DKALkanp~N 1421 (1652)
+++++..|++
T Consensus 451 ~~ll~~~Pd~ 460 (765)
T PRK10049 451 DDVVAREPQD 460 (765)
T ss_pred HHHHHhCCCC
Confidence 9999999988
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-12 Score=158.55 Aligned_cols=209 Identities=8% Similarity=-0.105 Sum_probs=149.2
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1064 (1652)
.|.+.|...+.+-.++...+. .|+++.|+..|.++++++|+++.+|+.++.+|.+.+...++.+.|++|++++|+
T Consensus 68 ~l~~~p~~~~~l~~l~~~~l~-----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 68 RVLTAKNGRDLLRRWVISPLA-----SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG 142 (656)
T ss_pred HHHhCCCchhHHHHHhhhHhh-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455556777777777755553 367899999999999999999999999999999999999999999999999999
Q ss_pred CHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1065 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1065 NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
+.. +...|...+ .+++|+.+|..+.... |+. .+.+..++ .+...|++++|+..+.++..
T Consensus 143 ~~~a~~~la~~l~~~g--------~~~eA~~~~~~~~~~~-P~~-------~~a~~~~~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 143 NSQIFALHLRTLVLMD--------KELQAISLARTQAQEV-PPR-------GDMIATCL-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred cHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHhC-CCC-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 987 445666666 8899999999888777 454 44444443 36788999999999888765
Q ss_pred cccCCCCcccchHHHHHHhhccCCcchh--hHHH---HH--HHHhhccchHHHhhhhhhhh----hhccCCCCcccchhh
Q 000330 1141 PATGSNDRHSLFLSDILTCLTISDKLIF--WVCC---VY--LVIYRKLPDAVLQLLECEKE----LFAIDWPPVQLEDDE 1209 (1652)
Q Consensus 1141 ~Al~g~sE~~lSLsKi~~YLt~sDR~~A--WL~~---iY--llrYrvLPGd~y~q~e~~KE----Af~I~W~y~~vlk~E 1209 (1652)
..-.. .+ .........+...++...| .+.. .+ .......+|..|...|...+ |... +.++++.+
T Consensus 206 ~~~~~-~~-~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~---~~~Al~l~ 280 (656)
T PRK15174 206 FFALE-RQ-ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEH---WRHALQFN 280 (656)
T ss_pred cCCCc-ch-hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHH---HHHHHhhC
Confidence 21111 11 1112223455555655444 1111 11 23344557888888887765 6777 77777778
Q ss_pred HHHHHHHHHHH
Q 000330 1210 KQRAIKLIEMA 1220 (1652)
Q Consensus 1210 PdnalAL~smA 1220 (1652)
|+++.++..+|
T Consensus 281 P~~~~a~~~lg 291 (656)
T PRK15174 281 SDNVRIVTLYA 291 (656)
T ss_pred CCCHHHHHHHH
Confidence 87777776664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=139.21 Aligned_cols=296 Identities=15% Similarity=0.099 Sum_probs=207.5
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC--------
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------- 1065 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N-------- 1065 (1652)
..+.-.+..++.. |+++.|+.+|.++++.+|.++.+|+.++.+|...+...++..+++++++..+..
T Consensus 36 ~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 36 SRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred cHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3444445555444 456899999999999999999999999999999999999999999999864322
Q ss_pred HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000330 1066 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1145 (1652)
Q Consensus 1066 Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g 1145 (1652)
+.|+.+|...+ .|++|+.+|.++.... +.. .+.+..++.+|...|++++|+..+.++.. ...
T Consensus 111 ~~La~~~~~~g--------~~~~A~~~~~~~l~~~-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~ 172 (389)
T PRK11788 111 QELGQDYLKAG--------LLDRAEELFLQLVDEG-DFA-------EGALQQLLEIYQQEKDWQKAIDVAERLEK--LGG 172 (389)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCC-cch-------HHHHHHHHHHHHHhchHHHHHHHHHHHHH--hcC
Confidence 12788888888 8999999999988766 444 68899999999999999999998888764 111
Q ss_pred CCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000330 1146 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1225 (1652)
Q Consensus 1146 ~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~ 1225 (1652)
... .. . ...|....+..+...+...+|... +.+.++.+|+...+.+.+| ..|.
T Consensus 173 ~~~---------------~~---~-----~~~~~~~la~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~la-~~~~ 225 (389)
T PRK11788 173 DSL---------------RV---E-----IAHFYCELAQQALARGDLDAARAL---LKKALAADPQCVRASILLG-DLAL 225 (389)
T ss_pred Ccc---------------hH---H-----HHHHHHHHHHHHHhCCCHHHHHHH---HHHHHhHCcCCHHHHHHHH-HHHH
Confidence 110 00 0 011122256666677777778777 7777777777777776665 4443
Q ss_pred hhcCCcchhhhhhhchhhHhHH-------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHH
Q 000330 1226 LYSNGESLEKETNLRSAHCFAV-------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1298 (1652)
Q Consensus 1226 ~~~ndesla~~~~~kt~~~fKL-------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~sv 1298 (1652)
. .|+...+...-.++...-|- .++..+...++.++|+.+|.++++..|....+...+..+...+..++|+..
T Consensus 226 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 226 A-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred H-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 3 45444444432222221111 223444457799999999999999999875554444444444458899999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhh
Q 000330 1299 FEEALIKWPKGVPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSVW 1345 (1652)
Q Consensus 1299 le~AL~~~PkNa~g~~caW~QLIq~al~---~en~d~ai~Lc~~ff~gia 1345 (1652)
|++++...|++.. +..++...+. .|+.++++.++++.+....
T Consensus 305 l~~~l~~~P~~~~-----~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 305 LREQLRRHPSLRG-----FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHhCcCHHH-----HHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 9999999999876 3344444442 4588899999988765443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-10 Score=146.27 Aligned_cols=380 Identities=13% Similarity=0.016 Sum_probs=238.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--H--HHHHHhcCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--L--WLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--L--wlmYInsr~slddrl~~Yd 1087 (1652)
|+++.|++.|.+||+++|+++.+.+.++.++...++..++..+|++|+.-.|.++. + +..|.+.+ .|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--------dyd 119 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK--------RWD 119 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CHH
Confidence 77899999999999999999755449999999999999999999999955555565 4 56999999 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhc---cCC
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT---ISD 1164 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt---~sD 1164 (1652)
+|+++|+++.+.. |+. .++++.++.+|...|++++|+..+.++++ ..+ ......++.|+. .+.
T Consensus 120 ~Aiely~kaL~~d-P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp----~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 120 QALALWQSSLKKD-PTN-------PDLISGMIMTQADAGRGGVVLKQATELAE--RDP----TVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHHHhhC-CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCc----chHHHHHHHHHHHhcchH
Confidence 9999999999999 666 89999999999999999999999999997 333 233446666766 222
Q ss_pred cchh----hHHHHH--HHHhhccchHHHhhhhhhhhhhccCCCCcccc------hhhHHHHHHHHHHHHHHHhhhcCCc-
Q 000330 1165 KLIF----WVCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLE------DDEKQRAIKLIEMAVNSVELYSNGE- 1231 (1652)
Q Consensus 1165 R~~A----WL~~iY--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vl------k~EPdnalAL~smA~dYY~~~~nde- 1231 (1652)
...+ .+...+ ...+-...-..+-.+|-..-|+.+-+.+.... -.+-+.+..++..|. .. +..+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~-~~---~~~~~ 261 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV-LP---TRSET 261 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc-cc---cccch
Confidence 1111 222222 11221111222333333333332222222111 111122222222110 00 0000
Q ss_pred --------chhhhh-----hhchhhHhHH------HHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhc
Q 000330 1232 --------SLEKET-----NLRSAHCFAV------NHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKH 1289 (1652)
Q Consensus 1232 --------sla~~~-----~~kt~~~fKL------N~IR~lI~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K 1289 (1652)
.++.-+ -.+.+...+. -.|--+...++...|+..|+.+-... |.-+.-++..+||..+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 000000 0011111111 11222223669999999999998554 7777779999999888
Q ss_pred ccCCccHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCC
Q 000330 1290 DFGDLSSVGFEEALIKWPKGVP--GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSP 1367 (1652)
Q Consensus 1290 ~m~~~A~svle~AL~~~PkNa~--g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~ 1367 (1652)
. |++|..+|.+++...|...+ .-...-.-|.--.++.+++++|..++.+.....++ + +..+ .++..+
T Consensus 342 ~-P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~------~~~~-~~~~~~-- 410 (822)
T PRK14574 342 L-PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-Q------VGVY-GLPGKE-- 410 (822)
T ss_pred C-cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-E------Eecc-CCCCCC--
Confidence 7 99999999999998753211 00111234566688999999999999886432221 0 0000 112221
Q ss_pred CCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000330 1368 ESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1446 (1652)
Q Consensus 1368 es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1446 (1652)
-+.|.. + ++...+.+....|++.+|...+|+.+..+|.| ..+++.+|-..+-.+. ...|++
T Consensus 411 -----pn~d~~-----~-----~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~-p~~A~~ 471 (822)
T PRK14574 411 -----PNDDWI-----E-----GQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDL-PRKAEQ 471 (822)
T ss_pred -----CCccHH-----H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC-HHHHHH
Confidence 234422 2 23333333344899999999999999999999 9999999998877664 444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-11 Score=142.94 Aligned_cols=381 Identities=15% Similarity=0.090 Sum_probs=270.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1086 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1086 (1652)
.|+++.|+.+|..++|+.|+.+++|..++..+...+..+.+.+.|..|++++|++|- +..+--.. ||+
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~-----Grl--- 200 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE-----GRL--- 200 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh-----ccc---
Confidence 467899999999999999999999999999999999999999999999999999998 44332222 333
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcc
Q 000330 1087 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1166 (1652)
Q Consensus 1087 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~ 1166 (1652)
++|-..|-++.... |.- -=+|--|--++..+|+..-||+.++.-.. ..|+
T Consensus 201 ~ea~~cYlkAi~~q-p~f-------AiawsnLg~~f~~~Gei~~aiq~y~eAvk-----ldP~----------------- 250 (966)
T KOG4626|consen 201 EEAKACYLKAIETQ-PCF-------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----LDPN----------------- 250 (966)
T ss_pred chhHHHHHHHHhhC-Cce-------eeeehhcchHHhhcchHHHHHHHHHHhhc-----CCCc-----------------
Confidence 56666665555544 331 22455677788899999999996654443 2331
Q ss_pred hhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh---
Q 000330 1167 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH--- 1243 (1652)
Q Consensus 1167 ~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~--- 1243 (1652)
|.-.|-. +|++|--.+...+|... |.+.+..-|..|++.=.||.=||+ -|+-+++...++++..
T Consensus 251 -------f~dAYiN-LGnV~ke~~~~d~Avs~---Y~rAl~lrpn~A~a~gNla~iYye--qG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 251 -------FLDAYIN-LGNVYKEARIFDRAVSC---YLRALNLRPNHAVAHGNLACIYYE--QGLLDLAIDTYKRALELQP 317 (966)
T ss_pred -------chHHHhh-HHHHHHHHhcchHHHHH---HHHHHhcCCcchhhccceEEEEec--cccHHHHHHHHHHHHhcCC
Confidence 2333545 58888888888999999 999999999999999999888998 4788888888766653
Q ss_pred HhHH--HHHHHH-HHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHH
Q 000330 1244 CFAV--NHIWCM-AVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWN 1318 (1652)
Q Consensus 1244 ~fKL--N~IR~l-I~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~ 1318 (1652)
.||. |-|... -..++.++|...|.++|.+||.-++- -|.-.|.+..+ -++|...|+.||+..|.=+. +.+
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa----a~n 392 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA----AHN 392 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh----hhh
Confidence 4444 214333 23779999999999999999999998 67777766664 88999999999999999998 999
Q ss_pred HHHHHHHHcCChHHHHHHHHH-------HHHhhhhccc------ccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000330 1319 QYVEYALQNGRHDFAAELMDR-------WFHSVWKVQY------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1385 (1652)
Q Consensus 1319 QLIq~al~~en~d~ai~Lc~~-------ff~gia~~Q~------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~ 1385 (1652)
-|.-...++|++++|+.--++ |-.+....+. +-.+|+.-+-+.. ++ ++.+ .|-
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~----nPt~-AeA-------- 458 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QI----NPTF-AEA-------- 458 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hc----CcHH-HHH--------
Confidence 999999999999999876655 3333333322 4444544433330 01 1111 221
Q ss_pred hhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccc
Q 000330 1386 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLP 1465 (1652)
Q Consensus 1386 d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf 1465 (1652)
|+=|+-++-- .|+..||..+|+.||+.+|+=-=-.|=.=|+.=...+..| -++.|-..+.+|.+-|. -|.||
T Consensus 459 ---hsNLasi~kD--sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D--~d~~~~kl~sivrdql~-~~rlp 530 (966)
T KOG4626|consen 459 ---HSNLASIYKD--SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD--YDKRMKKLVSIVRDQLE-KNRLP 530 (966)
T ss_pred ---HhhHHHHhhc--cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHh-hhcCC
Confidence 2455666666 8999999999999999999521144444444444455543 34444432233333331 26666
Q ss_pred cccc
Q 000330 1466 YLKL 1469 (1652)
Q Consensus 1466 ~~~~ 1469 (1652)
.--|
T Consensus 531 svhP 534 (966)
T KOG4626|consen 531 SVHP 534 (966)
T ss_pred ccCc
Confidence 6555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-09 Score=122.16 Aligned_cols=470 Identities=17% Similarity=0.160 Sum_probs=334.4
Q ss_pred hhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000330 984 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1063 (1652)
Q Consensus 984 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1063 (1652)
-+|...-++.+.||++|.--..|.. +.-|.+++.|||+.+-.+..+|..|+.+.++.+..+.+...+.+||..=|
T Consensus 64 d~irrnR~~~~~WikYaqwEesq~e-----~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQKE-----IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 3777788899999999988877754 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000330 1064 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1143 (1652)
Q Consensus 1064 ~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al 1143 (1652)
.-..||.-|+-.+-+|+ +-..|+++|++-..-. || ...|+..+++....++++-|...+.|..-
T Consensus 139 RVdqlWyKY~ymEE~Lg----Ni~gaRqiferW~~w~-P~--------eqaW~sfI~fElRykeieraR~IYerfV~--- 202 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLG----NIAGARQIFERWMEWE-PD--------EQAWLSFIKFELRYKEIERARSIYERFVL--- 202 (677)
T ss_pred hHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHcCC-Cc--------HHHHHHHHHHHHHhhHHHHHHHHHHHHhe---
Confidence 99999999998775555 6699999999988887 77 68999999999999999999998888774
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHH
Q 000330 1144 GSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVN 1222 (1652)
Q Consensus 1144 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~d 1222 (1652)
+.| +-..|+.+.- +.+.+.. .++..+++.|++
T Consensus 203 --~HP----------------~v~~wikyarFE~k~g~~-----------------------------~~aR~VyerAie 235 (677)
T KOG1915|consen 203 --VHP----------------KVSNWIKYARFEEKHGNV-----------------------------ALARSVYERAIE 235 (677)
T ss_pred --ecc----------------cHHHHHHHHHHHHhcCcH-----------------------------HHHHHHHHHHHH
Confidence 444 2225887764 5555544 678888888877
Q ss_pred HHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH--hhcccCC----ccH
Q 000330 1223 SVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL--QKHDFGD----LSS 1296 (1652)
Q Consensus 1223 YY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL--~~K~m~~----~A~ 1296 (1652)
+... +..+. .+-.-|+. +-......+.|+-+|.-++..-|.+-.-.|+..|+ +++-+.. +++
T Consensus 236 ~~~~----d~~~e----~lfvaFA~----fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 236 FLGD----DEEAE----ILFVAFAE----FEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred Hhhh----HHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7752 22111 11111211 11223378899999999999999998777887776 3443322 222
Q ss_pred -----HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCC
Q 000330 1297 -----VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPEST 1370 (1652)
Q Consensus 1297 -----svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~ 1370 (1652)
..|+..+..+|-|.. .|.-|+.+.=..|+-+.+.++-++ .|+.+.. .....-
T Consensus 304 v~KRk~qYE~~v~~np~nYD----sWfdylrL~e~~g~~~~Ire~yEr---AIanvpp~~ekr~W--------------- 361 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYD----SWFDYLRLEESVGDKDRIRETYER---AIANVPPASEKRYW--------------- 361 (677)
T ss_pred hhhhhhHHHHHHHhCCCCch----HHHHHHHHHHhcCCHHHHHHHHHH---HHccCCchhHHHHH---------------
Confidence 579999999999999 999999999999999999888766 3333322 000000
Q ss_pred CCCCcccccccccchhhHHHHHHH--HHH-HhhhcCHHHHHHHHHHHHhhccC--CcHHHHHHHHHHHHhcCCCCCCccc
Q 000330 1371 STSDPEFSVSNRNQMDVMFGYLNL--SLH-RLLQNDWNEARLAIDAALKAAAS--EHFKHCVREHAMLLLINESEPKEGA 1445 (1652)
Q Consensus 1371 s~~vSDfy~~~~~q~d~~fa~LGD--~L~-q~Lqg~~~EAfaAYDKALkanp~--N~~i~cLNNYAYFLS~e~~dL~KAe 1445 (1652)
--| .|||+ ++| .+.-.+.+.+...|..||+.=|- =.|--.|-=||.|.- ...+|.+|-
T Consensus 362 -----~RY-----------IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~AR 424 (677)
T KOG1915|consen 362 -----RRY-----------IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGAR 424 (677)
T ss_pred -----HHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHH
Confidence 013 45555 444 45567888899999999999993 456788999999975 344566655
Q ss_pred chhhhHHHHHHHHhhhcccccccc-cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccch
Q 000330 1446 PISWQLKLLNSYLDRARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDL 1524 (1652)
Q Consensus 1446 qMS~~~KtVsTYLDTAWILf~~~~-lAR~YI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi 1524 (1652)
++=. +.| -.| .+. +=|.|| +++..|.-... -
T Consensus 425 kiLG--~AI----G~c-----PK~KlFk~YI------------------------elElqL~efDR-------------c 456 (677)
T KOG1915|consen 425 KILG--NAI----GKC-----PKDKLFKGYI------------------------ELELQLREFDR-------------C 456 (677)
T ss_pred HHHH--HHh----ccC-----CchhHHHHHH------------------------HHHHHHhhHHH-------------H
Confidence 4222 111 000 111 335566 23333332210 1
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHH
Q 000330 1525 VDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEE 1604 (1652)
Q Consensus 1525 ~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~ 1604 (1652)
...-|+++|.-|.|-.-=+..+-|...- +-..- |..+.-=||.+-.--.||-+|.--+++.=.....+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~L-------gdtdR----aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSL-------GDTDR----ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHh-------hhHHH----HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 2356777888888877666555544321 11111 222222344443445799999999999888887666
Q ss_pred HHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000330 1605 ISERFFKRALSVYPFSIKLWKCYYDLSKT 1633 (1652)
Q Consensus 1605 i~~rfy~~AlsvyPfs~~LW~~y~~~~~~ 1633 (1652)
- +-+|++-|.--+.+- .|-.+-+|+.+
T Consensus 526 a-R~LYerlL~rt~h~k-vWisFA~fe~s 552 (677)
T KOG1915|consen 526 A-RALYERLLDRTQHVK-VWISFAKFEAS 552 (677)
T ss_pred H-HHHHHHHHHhcccch-HHHhHHHHhcc
Confidence 5 999999998877765 99999999983
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-10 Score=144.06 Aligned_cols=187 Identities=6% Similarity=-0.057 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000330 1258 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1336 (1652)
Q Consensus 1258 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~L 1336 (1652)
+.++|+..|.+++...|.+.. .|..++. ...+..++|+..|++++...|.+ . .|.++...+++.|++++|+..
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----DLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----HHHHHHHHHHHCCCHHHHHHH
Confidence 344677777777777776544 3333332 23333667777777776665553 3 467777788888888888888
Q ss_pred HHHH----------HHhhhhcc---cccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000330 1337 MDRW----------FHSVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1403 (1652)
Q Consensus 1337 c~~f----------f~gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~ 1403 (1652)
+++. +..++... .+.++|+..+++....- +. .+.| .-+|.++.+ .|+
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-----P~--~~a~-----------~~LA~~l~~--lG~ 624 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-----PS--ANAY-----------VARATIYRQ--RHN 624 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CC--HHHH-----------HHHHHHHHH--CCC
Confidence 8761 11223233 47888888888764331 11 3444 567778888 999
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc--cchhh
Q 000330 1404 WNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL--LPRQF 1474 (1652)
Q Consensus 1404 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~--lAR~Y 1474 (1652)
.++|..+|++||..+|++ ...+++++++|...+ +.++|..+-. +.+ ..++.. ||++...++ +|..+
T Consensus 625 ~deA~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G-~~eeAi~~l~--~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 625 VPAAVSDLRAALELEPNN--SNYQAALGYALWDSG-DIAQSREMLE--RAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCC-CHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999 899999999988765 4666666444 555 455555 999999999 88888
Q ss_pred h
Q 000330 1475 I 1475 (1652)
Q Consensus 1475 I 1475 (1652)
+
T Consensus 700 l 700 (987)
T PRK09782 700 A 700 (987)
T ss_pred H
Confidence 8
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-12 Score=143.67 Aligned_cols=260 Identities=16% Similarity=0.165 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000330 995 QCVEMALLILNQDANKLEGMKKALSLLSRAL-EA-DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1072 (1652)
Q Consensus 995 lWLelAl~~Lnq~~n~~g~ydAALdLLsrAL-EI-NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1072 (1652)
..|.+|..++.. |++++|+.+|...+ .+ .|++++.|..++.+....+....+.++|++.++.++.+......+
T Consensus 10 ~~l~~A~~~~~~-----~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l 84 (280)
T PF13429_consen 10 EALRLARLLYQR-----GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445667777755 55699999996554 55 599999999999999999999999999999999988766522222
Q ss_pred ---HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000330 1073 ---INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149 (1652)
Q Consensus 1073 ---Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~ 1149 (1652)
+..+ .|++|+.+++.....+ ++ .+.|..++++|...|+++++...|.+++. ....
T Consensus 85 ~~l~~~~--------~~~~A~~~~~~~~~~~-~~--------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~--- 142 (280)
T PF13429_consen 85 IQLLQDG--------DPEEALKLAEKAYERD-GD--------PRYLLSALQLYYRLGDYDEAEELLEKLEE--LPAA--- 142 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH---T-----
T ss_pred ccccccc--------cccccccccccccccc-cc--------cchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCC---
Confidence 3344 7899999998888776 45 57788899999999999999998888774 1110
Q ss_pred cchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcC
Q 000330 1150 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSN 1229 (1652)
Q Consensus 1150 ~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~n 1229 (1652)
.+. ..|-.+.|.++.+.|..++|..+ +.++++.+|++..++..+
T Consensus 143 -------------~~~----------~~~~~~~a~~~~~~G~~~~A~~~---~~~al~~~P~~~~~~~~l---------- 186 (280)
T PF13429_consen 143 -------------PDS----------ARFWLALAEIYEQLGDPDKALRD---YRKALELDPDDPDARNAL---------- 186 (280)
T ss_dssp --------------T-----------HHHHHHHHHHHHHCCHHHHHHHH---HHHHHHH-TT-HHHHHHH----------
T ss_pred -------------CCC----------HHHHHHHHHHHHHcCCHHHHHHH---HHHHHHcCCCCHHHHHHH----------
Confidence 111 12333467788889999999999 888899899888877665
Q ss_pred CcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCC
Q 000330 1230 GESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWP 1307 (1652)
Q Consensus 1230 desla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~P 1307 (1652)
+..+|..++.++++.++..+.+..|.+..+ .+..+|+..++ +++|+..|++++..+|
T Consensus 187 --------------------~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 187 --------------------AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNP 245 (280)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHST
T ss_pred --------------------HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccc
Confidence 334455667777888999999999999999 67777777665 9999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000330 1308 KGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1342 (1652)
Q Consensus 1308 kNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~ 1342 (1652)
+++. ....|+......|+.++|.++-++.+.
T Consensus 246 ~d~~----~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPL----WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HH----HHHHHHHHHT-----------------
T ss_pred cccc----ccccccccccccccccccccccccccc
Confidence 9999 888999999999999999998877544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=136.54 Aligned_cols=463 Identities=14% Similarity=0.140 Sum_probs=291.6
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC-------
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN------- 1062 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln------- 1062 (1652)
|..+...+-|+.--+++.. ++.|+.|+.+|+++..+||.+|.+..+|+.+|+..++-+.+....++|+...
T Consensus 230 p~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 5777888877777776654 5889999999999999999999999999999999999999999999998766
Q ss_pred CCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 000330 1063 EGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1142 (1652)
Q Consensus 1063 P~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~A 1142 (1652)
...||++-+|=.++ +|++|-..|.+..... ++. . +=.++=+.|.|...|+++.|+.+..++..
T Consensus 308 es~Y~~gRs~Ha~G--------d~ekA~~yY~~s~k~~-~d~-----~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k-- 370 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQG--------DFEKAFKYYMESLKAD-NDN-----F-VLPLVGLGQMYIKRGDLEESKFCFEKVLK-- 370 (1018)
T ss_pred HHHHHHHHHHHhhc--------cHHHHHHHHHHHHccC-CCC-----c-cccccchhHHHHHhchHHHHHHHHHHHHH--
Confidence 23567999999999 9999999998877776 442 1 22456789999999999999998888875
Q ss_pred cCCCCcccchHHHHHHhhccCC-c--chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCccc-chhhHHHHHHHHH
Q 000330 1143 TGSNDRHSLFLSDILTCLTISD-K--LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-EDDEKQRAIKLIE 1218 (1652)
Q Consensus 1143 l~g~sE~~lSLsKi~~YLt~sD-R--~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~v-lk~EPdnalAL~s 1218 (1652)
..-.+ .-.-+|.-||-... + .+...+-.| .|...-+.-+.-++|.. ..++ ...||--.+-.+.
T Consensus 371 ~~p~~---~etm~iLG~Lya~~~~~~~~~d~a~~~-------l~K~~~~~~~d~~a~l~---laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 371 QLPNN---YETMKILGCLYAHSAKKQEKRDKASNV-------LGKVLEQTPVDSEAWLE---LAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred hCcch---HHHHHHHHhHHHhhhhhhHHHHHHHHH-------HHHHHhcccccHHHHHH---HHHHHHhcChHHHHHHHH
Confidence 22111 11224443332222 1 111222222 23333333344444332 2222 3456666677777
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHH---HHHHHHHH-hcCHHHHHHHHHHHHHhCC-----Cc---hhH---HHHH
Q 000330 1219 MAVNSVELYSNGESLEKETNLRSAHCFAV---NHIWCMAV-LNGLECSMNLLEKYIKLYP-----SC---LEL---VLMK 1283 (1652)
Q Consensus 1219 mA~dYY~~~~ndesla~~~~~kt~~~fKL---N~IR~lI~-LEDse~A~~LfdklLk~~P-----~d---~eL---~L~A 1283 (1652)
+|.+.+.. .+. + +|. |-+..+.. ++..+.|...|+.++..+- +. +.| -..|
T Consensus 438 ~A~d~L~~-~~~------------~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 438 NALDILES-KGK------------Q-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHHHHHHH-cCC------------C-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 77666653 221 1 444 22444433 7788999999998887722 21 223 3334
Q ss_pred HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc--
Q 000330 1284 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-- 1349 (1652)
Q Consensus 1284 AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~------------ff~gia~~Q~-- 1349 (1652)
..++.-++.+.|-..|..++...|.-.. ++.-|.-++..+++..+|+.+++. -|.|.++..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId----~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYID----AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHH----HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 4455555677888999999998887666 666677778888888888888887 4445444444
Q ss_pred ---ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH------HHHHhhh------cCHHHHHHHHHHH
Q 000330 1350 ---SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL------SLHRLLQ------NDWNEARLAIDAA 1414 (1652)
Q Consensus 1350 ---~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD------~L~q~Lq------g~~~EAfaAYDKA 1414 (1652)
-+....-++++.... .|-| ++|++ .+|+|-. +..++|+..|.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~----------~D~Y-----------sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTK----------TDAY-----------SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred hcccccHHHHHHhhhccC----------Cchh-----------HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 222222233322111 6778 55555 3333333 3478899999999
Q ss_pred HhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH--------HHHHhhhcccccccccchhhhccccchhhHHH
Q 000330 1415 LKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL--------NSYLDRARSLPYLKLLPRQFINNIERPRLQQL 1486 (1652)
Q Consensus 1415 Lkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV--------sTYLDTAWILf~~~~lAR~YI~~i~k~rv~~l 1486 (1652)
|.-+|.| +.|=|=-+--|+..+. +.+|-. .|.-| .+||+-|-+++.++ .|+. --|.
T Consensus 639 L~~dpkN--~yAANGIgiVLA~kg~-~~~A~d---IFsqVrEa~~~~~dv~lNlah~~~e~~----qy~~------AIqm 702 (1018)
T KOG2002|consen 639 LRNDPKN--MYAANGIGIVLAEKGR-FSEARD---IFSQVREATSDFEDVWLNLAHCYVEQG----QYRL------AIQM 702 (1018)
T ss_pred HhcCcch--hhhccchhhhhhhccC-chHHHH---HHHHHHHHHhhCCceeeeHHHHHHHHH----HHHH------HHHH
Confidence 9999999 8888888888887664 666655 44333 22333344555553 3331 1122
Q ss_pred HhhhcCCC--CCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHH
Q 000330 1487 IDNLLSPV--SSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVF 1546 (1652)
Q Consensus 1487 iDqaL~~~--S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~ 1546 (1652)
-++.|+.. ..++....---+.|+.... -+.-+.-+...++..|+|+.|-+-++
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence 23444441 2223333334445642211 12234666677899999988665444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=125.19 Aligned_cols=274 Identities=14% Similarity=0.098 Sum_probs=191.5
Q ss_pred hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000330 987 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1062 (1652)
Q Consensus 987 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS----aeaWy~yl~lY~~~~~~eea~emlekAVeln 1062 (1652)
+..|.+.+.|..+|..+... |+++.|+.++..+++..+.. ..+|+.++.+|...+....+...|+++++.+
T Consensus 63 ~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 137 (389)
T PRK11788 63 KVDPETVELHLALGNLFRRR-----GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG 137 (389)
T ss_pred hcCcccHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 34466778899988888766 45699999999999864433 3688999999999999999999999999998
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000330 1063 EGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1063 P~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1138 (1652)
|.+.. ++.+|...+ .|++|++.|..+.... +.. ....+..++..+..+|...|++++|+..+.++
T Consensus 138 ~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 138 DFAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLG-GDS--LRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred cchHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhc-CCc--chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 87765 677888888 8999999999988766 332 11233445678889999999999999988777
Q ss_pred cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHH-HHH
Q 000330 1139 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-KLI 1217 (1652)
Q Consensus 1139 Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnal-AL~ 1217 (1652)
.. ..|. + .....+++.+|...|..++|..+ +.++++.+|++.. ++.
T Consensus 207 l~-----~~p~--------------~-----------~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 207 LA-----ADPQ--------------C-----------VRASILLGDLALAQGDYAAAIEA---LERVEEQDPEYLSEVLP 253 (389)
T ss_pred Hh-----HCcC--------------C-----------HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHChhhHHHHHH
Confidence 64 1221 0 00112367778888888888888 8888887887643 333
Q ss_pred HHHHHHHhhhcCCcchhhhhhhch-----hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcc-
Q 000330 1218 EMAVNSVELYSNGESLEKETNLRS-----AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD- 1290 (1652)
Q Consensus 1218 smA~dYY~~~~ndesla~~~~~kt-----~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~- 1290 (1652)
.++ ..|.. .|+.+.+...-.++ ....-+.....+...++.++|+.+|.++++..|++..+ .++..++...+
T Consensus 254 ~l~-~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 254 KLM-ECYQA-LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHH-HHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 443 33333 44444443331111 11111333444455779999999999999999999998 56666664432
Q ss_pred -cCCccHHHHHHHHHhCCCCCc
Q 000330 1291 -FGDLSSVGFEEALIKWPKGVP 1311 (1652)
Q Consensus 1291 -m~~~A~svle~AL~~~PkNa~ 1311 (1652)
...+++.+|++.+..-.+..|
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCC
Confidence 366788888877754434344
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-11 Score=150.26 Aligned_cols=145 Identities=7% Similarity=-0.024 Sum_probs=109.0
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCC
Q 000330 1302 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPE 1368 (1652)
Q Consensus 1302 AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~e 1368 (1652)
+....|.|.. +|.|||..+.+.+++++|+++|++ ||.|+-+++. +.+.+.-+ .+..-.+.+
T Consensus 23 ~~~~~p~n~~----a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 23 ANNYSLSKFK----ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred cccCCcchHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4566788888 999999999999999999999999 8888866666 44444333 233333445
Q ss_pred CCCCCCcccccccccchhhHHHHH--HHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000330 1369 STSTSDPEFSVSNRNQMDVMFGYL--NLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1446 (1652)
Q Consensus 1369 s~s~~vSDfy~~~~~q~d~~fa~L--GD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1446 (1652)
.+..+++++|.+--.--+--+++. ++||=+ .|+.+||+++||++|+++|.| .+||||||||++.. +|+||.+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk--~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~--dL~KA~~ 170 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAK--LNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE--DKEKAIT 170 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh--hHHHHHH
Confidence 555677877711111001111222 224444 599999999999999999999 99999999999999 9999999
Q ss_pred hhhhHHHHHHHHhh
Q 000330 1447 ISWQLKLLNSYLDR 1460 (1652)
Q Consensus 1447 MS~~~KtVsTYLDT 1460 (1652)
|+. |+|.+|+|+
T Consensus 171 m~~--KAV~~~i~~ 182 (906)
T PRK14720 171 YLK--KAIYRFIKK 182 (906)
T ss_pred HHH--HHHHHHHhh
Confidence 999 999999997
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-08 Score=121.99 Aligned_cols=574 Identities=15% Similarity=0.147 Sum_probs=313.8
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1071 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1071 (1652)
+.+..|-.|.....+ |+++.|.-++.-++..+|.++++|+.|+.+|-++|.-+.+....-.|.-++|.++.+|-.
T Consensus 138 ~l~~ll~eAN~lfar-----g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFAR-----GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 456777777776666 567999999999999999999999999999999998888899999999999999998855
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC--cc
Q 000330 1072 YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND--RH 1149 (1652)
Q Consensus 1072 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s--E~ 1149 (1652)
....-..++ .++.|+-.|-++.+.+ |+. -..++-.+.||..+|.+..|..+.-+|++ ..+.. ++
T Consensus 213 ladls~~~~----~i~qA~~cy~rAI~~~-p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~~p~~d~er 278 (895)
T KOG2076|consen 213 LADLSEQLG----NINQARYCYSRAIQAN-PSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQ--LDPPVDIER 278 (895)
T ss_pred HHHHHHhcc----cHHHHHHHHHHHHhcC-Ccc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHh--hCCchhHHH
Confidence 444332333 7899999999999998 454 78999999999999999999999999997 44311 11
Q ss_pred --cchHHHHHHhhccCCcchhhHH-HHHHH----Hh----hccchHHHhhhhh---------------------------
Q 000330 1150 --SLFLSDILTCLTISDKLIFWVC-CVYLV----IY----RKLPDAVLQLLEC--------------------------- 1191 (1652)
Q Consensus 1150 --~lSLsKi~~YLt~sDR~~AWL~-~iYll----rY----rvLPGd~y~q~e~--------------------------- 1191 (1652)
++---.++.|.+.+++..||=+ .-|.. ++ -.+...+|+-+..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 1222236678888888666211 11100 00 0112222322221
Q ss_pred -------------hhhhhccCC-C----Ccccchhh---------------HHHHHHHHHHHHHHHhhhcCCcchhhhh-
Q 000330 1192 -------------EKELFAIDW-P----PVQLEDDE---------------KQRAIKLIEMAVNSVELYSNGESLEKET- 1237 (1652)
Q Consensus 1192 -------------~KEAf~I~W-~----y~~vlk~E---------------PdnalAL~smA~dYY~~~~ndesla~~~- 1237 (1652)
++..+.|+= + ..++-..+ |+...-|+-..++.|.. .+.-..+-..
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cccHHHHHHHH
Confidence 111122210 0 00111111 21111121111232321 1111111111
Q ss_pred ----hhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCC
Q 000330 1238 ----NLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1309 (1652)
Q Consensus 1238 ----~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkN 1309 (1652)
+....+..-+ .+.+||..++.-+.|+..|.++|...|.+.+. .|.+.| +..+.+++|..+++..+.-+|++
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhcccCCCccc
Confidence 2222333222 56799888889999999999999999999999 444444 44444999999999888555555
Q ss_pred CchHHHHHHH-------HHHHHHHcCChHHHHHHHHH----HHHhhhhccc-ccccchhhhc--------------ccCC
Q 000330 1310 VPGIQCIWNQ-------YVEYALQNGRHDFAAELMDR----WFHSVWKVQY-SQVEISDPLV--------------ADMS 1363 (1652)
Q Consensus 1310 a~g~~caW~Q-------LIq~al~~en~d~ai~Lc~~----ff~gia~~Q~-~~deALDaLr--------------kgns 1363 (1652)
++ .|+|.+ +.......|+.++=+.+... |+.-..-.+. ++.+..-..+ .+..
T Consensus 517 ~e--~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 517 AE--ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred hh--hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 55 444433 34455566676665555544 2221111111 0111111111 0000
Q ss_pred CCCC-------CCCCC--CCcccccccccchhhH---HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC--CcHHH-HHH
Q 000330 1364 HSSP-------ESTST--SDPEFSVSNRNQMDVM---FGYLNLSLHRLLQNDWNEARLAIDAALKAAAS--EHFKH-CVR 1428 (1652)
Q Consensus 1364 ~i~~-------es~s~--~vSDfy~~~~~q~d~~---fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~--N~~i~-cLN 1428 (1652)
..+. -.+.. ..+++- .-.+|-. |.-+=++|.. .+++.||......|+.+.-. -.-+- -|.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~---~Lsiddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~ 669 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELR---GLSIDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQ 669 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhc---cCcHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 0000 00110 001110 0112222 3333447777 99999999999999988772 11133 444
Q ss_pred HHHHHHhcCCCCCCcccchhhhHHHH-H---HHHhh----hcccccccccchhhhccccchhhHHHHhhhcCCCCCChhh
Q 000330 1429 EHAMLLLINESEPKEGAPISWQLKLL-N---SYLDR----ARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSL 1500 (1652)
Q Consensus 1429 NYAYFLS~e~~dL~KAeqMS~~~KtV-s---TYLDT----AWILf~~~~lAR~YI~~i~k~rv~~liDqaL~~~S~dss~ 1500 (1652)
.-.++.++...+-..|.. + ++-+ . -|+|+ .|.| --..+++.+..-+..-||-.++.+...++
T Consensus 670 ~~~l~~s~~~~d~~~a~~--~-lR~~i~~~~~~~~~~q~~l~n~-----~~s~~~~~~q~v~~~R~~~~~~~~~~~~~-- 739 (895)
T KOG2076|consen 670 FLGLKASLYARDPGDAFS--Y-LRSVITQFQFYLDVYQLNLWNL-----DFSYFSKYGQRVCYLRLIMRLLVKNKDDT-- 739 (895)
T ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHHHhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCccCC--
Confidence 444555565555555543 2 3322 2 24554 5775 11333334444444344444554433221
Q ss_pred HHHHHhhccCC-CCcccccccccchhHHHHHHHhhcCcch----hhHHHHHH------HhhccCCCCCCCCCchhHHHHH
Q 000330 1501 VNLVLEVCYGP-SLLPRNFSKLKDLVDFVEGIMEIVPSNY----QLAFSVFK------LLNKDHNPNITDAVPESVLFWA 1569 (1652)
Q Consensus 1501 ~nkALE~W~g~-slLpqKI~~kKyi~dfVE~ime~~P~Ny----~Lal~v~k------ll~k~~~~~~~d~~s~~~~fwA 1569 (1652)
.+|-+-+|- .++...+ |+-...-=++-..+|.+. -||+++.- .+.+|+. -+++
T Consensus 740 --~~l~~i~gh~~~~~~s~---~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~-----------i~qG 803 (895)
T KOG2076|consen 740 --PPLALIYGHNLFVNASF---KHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQ-----------IAQG 803 (895)
T ss_pred --cceeeeechhHhhccch---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHH
Confidence 122222111 0111111 111122223445677744 34444332 2333333 4566
Q ss_pred hhhh--hhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHH
Q 000330 1570 SSSL--VSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIK 1622 (1652)
Q Consensus 1570 ~s~l--~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfs~~ 1622 (1652)
.++| +.-+..+- -.-|... .-|-..++ .|+..++..||.+||.++|.+..
T Consensus 804 ~afL~RY~~lR~~~-~~QEa~Y-NigRayh~-~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 804 FAFLKRYKELRRCE-EKQEAFY-NIGRAYHQ-IGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHHHHhhccH-HHHHHHH-HHHHHHHH-cccHHHHHHHHHHHhCCCccccc
Confidence 6677 67765111 1123333 33344444 58899999999999999998763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-08 Score=118.62 Aligned_cols=288 Identities=9% Similarity=0.071 Sum_probs=199.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIF-YSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY-~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1084 (1652)
.|+++.|..++.++-+.. +.+.++|.++... .++++.+.++++|++|++.+|++.. .+.+|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-------- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-------- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC--------
Confidence 488999996666655442 2377777775555 7888889999999999999999864 367999999
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1164 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1164 (1652)
.|+.|+..|+++.+.. |+. .+++..+.++|.+.|+++.|+.++.+|.. ....++
T Consensus 168 ~~~~Al~~l~~~~~~~-P~~-------~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~---------------- 221 (398)
T PRK10747 168 ENHAARHGVDKLLEVA-PRH-------PEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDE---------------- 221 (398)
T ss_pred CHHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCH----------------
Confidence 9999999999999998 666 89999999999999999999999998885 111111
Q ss_pred cchhhHH-HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000330 1165 KLIFWVC-CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1243 (1652)
Q Consensus 1165 R~~AWL~-~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1243 (1652)
....-+. ..| ..+....... ...+++.=-|. .+.+..|++ .
T Consensus 222 ~~~~~l~~~a~----~~l~~~~~~~--~~~~~l~~~w~--~lp~~~~~~------------------------------~ 263 (398)
T PRK10747 222 EHRAMLEQQAW----IGLMDQAMAD--QGSEGLKRWWK--NQSRKTRHQ------------------------------V 263 (398)
T ss_pred HHHHHHHHHHH----HHHHHHHHHh--cCHHHHHHHHH--hCCHHHhCC------------------------------H
Confidence 0000000 011 1110000000 00111110000 011111111 2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000330 1244 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1323 (1652)
Q Consensus 1244 ~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1323 (1652)
..-+.+.+.++..++.++|..++.+.++. |.+.++.+...++...+ +.+++..++..+...|+++. .+..+.+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~-~~~al~~~e~~lk~~P~~~~----l~l~lgrl 337 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNN-PEQLEKVLRQQIKQHGDTPL----LWSTLGQL 337 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Confidence 22223456667788999999999999995 55778866666665544 78899999999999999999 77788999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000330 1324 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1403 (1652)
Q Consensus 1324 al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~ 1403 (1652)
+++.++|++|....++.. . ..| | +..+..|+.++-+ .|+
T Consensus 338 ~~~~~~~~~A~~~le~al-----------------~--~~P-----------~---------~~~~~~La~~~~~--~g~ 376 (398)
T PRK10747 338 LMKHGEWQEASLAFRAAL-----------------K--QRP-----------D---------AYDYAWLADALDR--LHK 376 (398)
T ss_pred HHHCCCHHHHHHHHHHHH-----------------h--cCC-----------C---------HHHHHHHHHHHHH--cCC
Confidence 999999999998886511 1 011 0 1123688888888 999
Q ss_pred HHHHHHHHHHHHhhc
Q 000330 1404 WNEARLAIDAALKAA 1418 (1652)
Q Consensus 1404 ~~EAfaAYDKALkan 1418 (1652)
.++|...|.++|...
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-09 Score=133.58 Aligned_cols=318 Identities=14% Similarity=0.050 Sum_probs=212.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-HHHHH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMY 1072 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-LwlmY 1072 (1652)
..-+-+|..+.++ |+|+.|+.+|.++|+.+|+++.+++.++.+|...++.+++.+.++++++.+|.+.. +.+.|
T Consensus 103 ~~llalA~ly~~~-----gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 103 RGLASAARAYRNE-----KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 3333334455554 55799999999999999999999999999999999999999999999999999877 55666
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc------------c
Q 000330 1073 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL------------I 1140 (1652)
Q Consensus 1073 Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE------------q 1140 (1652)
+..+ . ..+.+|+..|+++...+ |+. .++++.++..+...|-...|++-+..-- -
T Consensus 178 L~~~--~----~~~~~AL~~~ekll~~~-P~n-------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 178 LNRA--T----DRNYDALQASSEAVRLA-PTS-------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred HHHh--c----chHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 6633 1 14556999999999999 676 8999999999999999888887333111 0
Q ss_pred --------cc---cCCCCcc----cchHHHHHHhhc---cCCcchh-h----------HHHH--H---HHHhhcc-----
Q 000330 1141 --------PA---TGSNDRH----SLFLSDILTCLT---ISDKLIF-W----------VCCV--Y---LVIYRKL----- 1181 (1652)
Q Consensus 1141 --------~A---l~g~sE~----~lSLsKi~~YLt---~sDR~~A-W----------L~~i--Y---llrYrvL----- 1181 (1652)
.+ .....|+ +-.|+.+..++. ....... | |..- | .-+|..|
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 00 0001111 114445555444 1111001 1 1110 1 2223222
Q ss_pred ---------chHHHhhhhhhhhhhccCCCCcccchhhH------HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhH
Q 000330 1182 ---------PDAVLQLLECEKELFAIDWPPVQLEDDEK------QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA 1246 (1652)
Q Consensus 1182 ---------PGd~y~q~e~~KEAf~I~W~y~~vlk~EP------dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fK 1246 (1652)
-++-|+-.+.+.+|..| |.+++..+| ........+.+.|.++ ++-+.+...-.++....|
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l---~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~--e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPI---LSSLYYSDGKTFRNSDDLLDADDLYYSLNES--EQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHH---HHHHhhccccccCCCcchHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCC
Confidence 24668888889999999 888877653 2232223333333331 221122222111111122
Q ss_pred ---------------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHH
Q 000330 1247 ---------------------VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALI 1304 (1652)
Q Consensus 1247 ---------------------LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~ 1304 (1652)
...++.++-.++..+|.+++++++..-|.+..|++..+-+.... -|.+|...++.++.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 01133334477999999999999999999999955555554444 49999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1305 KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1305 ~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
++|++.. +..+++..++..++|.+|..++..
T Consensus 479 l~P~~~~----~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 479 LAPRSLI----LERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred hCCccHH----HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999 888899999999999999988855
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-08 Score=118.12 Aligned_cols=460 Identities=15% Similarity=0.121 Sum_probs=283.3
Q ss_pred ccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHH
Q 000330 989 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1068 (1652)
Q Consensus 989 ~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~L 1068 (1652)
......+||++|.--+.-+. ..-|.+++.||+.+-|----+||.|..+.-..++-.++.+.|++=.+..| ...-
T Consensus 103 d~r~itLWlkYae~Emknk~-----vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqa 176 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQ-----VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQA 176 (677)
T ss_pred ccccchHHHHHHHHHHhhhh-----HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHH
Confidence 34445899999987665543 47899999999999999999999999999899999999999999999997 5679
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-
Q 000330 1069 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND- 1147 (1652)
Q Consensus 1069 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s- 1147 (1652)
|+.||+.+.+.- ..++|+++|++-+-.+ |+ ..-|+--+.+...-|++..|.+++.+--. .-|..
T Consensus 177 W~sfI~fElRyk----eieraR~IYerfV~~H-P~--------v~~wikyarFE~k~g~~~~aR~VyerAie--~~~~d~ 241 (677)
T KOG1915|consen 177 WLSFIKFELRYK----EIERARSIYERFVLVH-PK--------VSNWIKYARFEEKHGNVALARSVYERAIE--FLGDDE 241 (677)
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHheec-cc--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhhhHH
Confidence 999999884443 5699999999999998 67 67889999999999999999987765443 11111
Q ss_pred cccchHHHHHHhhccC-CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhh
Q 000330 1148 RHSLFLSDILTCLTIS-DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1226 (1652)
Q Consensus 1148 E~~lSLsKi~~YLt~s-DR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~ 1226 (1652)
+..+..-.|..+.... .-.-|-..+.| ....+| .|+..++|.- + +..=.+
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iyky--Ald~~p------k~raeeL~k~---------------~------~~fEKq 292 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKY--ALDHIP------KGRAEELYKK---------------Y------TAFEKQ 292 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC------cccHHHHHHH---------------H------HHHHHH
Confidence 1011222222222110 00001111111 112222 2222222221 1 111112
Q ss_pred hcCCcchhhhh-------hhchhhHhHHHH------HHHHHHhcCHHHHHHHHHHHHHhCCCchh---------HHHHHH
Q 000330 1227 YSNGESLEKET-------NLRSAHCFAVNH------IWCMAVLNGLECSMNLLEKYIKLYPSCLE---------LVLMKA 1284 (1652)
Q Consensus 1227 ~~ndesla~~~-------~~kt~~~fKLN~------IR~lI~LEDse~A~~LfdklLk~~P~d~e---------L~L~AA 1284 (1652)
|...+...... +++....-|.|+ ++..-..++.+.+++.|.+++...|.-.+ ||+-.+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 11112222211 233333344443 44433366999999999999998887544 333332
Q ss_pred -H--HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--c------ccc
Q 000330 1285 -R--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--S------QVE 1353 (1652)
Q Consensus 1285 -y--L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~--~------~de 1353 (1652)
| |..++ .+.++.||+..|.+-|...=--..+|+.|+++.+++.+.+.|.+++-....-+++.-. . +=.
T Consensus 373 lyeEle~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 373 LYEELEAED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 3 34454 7788899999999999988888889999999999999999999998663333332221 0 000
Q ss_pred chhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000330 1354 ISDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1432 (1652)
Q Consensus 1354 ALDaLrkg-ns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAY 1432 (1652)
-.|-+++. -.- ++ + +|.++- +.++-+-..-..|+.+.|.+.|+=|++-.....-+..|.-|.-
T Consensus 452 efDRcRkLYEkf--le---------~-~Pe~c~----~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 452 EFDRCRKLYEKF--LE---------F-SPENCY----AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hHHHHHHHHHHH--Hh---------c-ChHhhH----HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 11112211 000 00 0 111221 5666666666677778888888887777666666777777777
Q ss_pred HHhcCCCCCCcccchhhhHHHHHHHHhh-----hcccccccc-----------cchhhhccccchhhHHHHhhhcCC--C
Q 000330 1433 LLLINESEPKEGAPISWQLKLLNSYLDR-----ARSLPYLKL-----------LPRQFINNIERPRLQQLIDNLLSP--V 1494 (1652)
Q Consensus 1433 FLS~e~~dL~KAeqMS~~~KtVsTYLDT-----AWILf~~~~-----------lAR~YI~~i~k~rv~~liDqaL~~--~ 1494 (1652)
|=-.++. ..||- ++-..|||+ .||-|.+-. ++..=|+.--.-|-|+..|.|+.. .
T Consensus 516 FEi~~~E-~ekaR------~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 516 FEIEEGE-FEKAR------ALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred hhhhcch-HHHHH------HHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 7554332 22211 223788997 399886433 334444433445667788888765 2
Q ss_pred CCChhhHHHHHhhc------cC--------CCCccccccccc
Q 000330 1495 SSDFSLVNLVLEVC------YG--------PSLLPRNFSKLK 1522 (1652)
Q Consensus 1495 S~dss~~nkALE~W------~g--------~slLpqKI~~kK 1522 (1652)
+.+-...=..||.| +| .+.+|+||++++
T Consensus 589 ~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr 630 (677)
T KOG1915|consen 589 STPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRR 630 (677)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhh
Confidence 22222333378889 33 344777776655
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-10 Score=122.51 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=105.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000330 1250 IWCMAVLNGLECSMNLLEKYIKLY--PSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1326 (1652)
Q Consensus 1250 IR~lI~LEDse~A~~LfdklLk~~--P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1326 (1652)
+..+...++.+.+..++.++.+.. |.+..+++..+.+..+. .+++|+..|++||...|+|.. ++..|+-..+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~ 192 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLID 192 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHH
Confidence 444455678899999999988766 77888866555554443 488999999999999999999 99999999999
Q ss_pred cCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHH
Q 000330 1327 NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1406 (1652)
Q Consensus 1327 ~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~E 1406 (1652)
.|+.++++++++.|-... +. .++++ ..++.++.. .|+.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~-------------------~~--------~~~~~-----------~~la~~~~~--lg~~~~ 232 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-------------------PD--------DPDLW-----------DALAAAYLQ--LGRYEE 232 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--------------------HT--------SCCHC-----------HHHHHHHHH--HT-HHH
T ss_pred CCChHHHHHHHHHHHHHC-------------------cC--------HHHHH-----------HHHHHHhcc--cccccc
Confidence 999999999997754433 01 12333 667888888 899999
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000330 1407 ARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1449 (1652)
Q Consensus 1407 AfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1449 (1652)
|..+|+++++.+|++ ...+..||..|...|. .++|.++-.
T Consensus 233 Al~~~~~~~~~~p~d--~~~~~~~a~~l~~~g~-~~~A~~~~~ 272 (280)
T PF13429_consen 233 ALEYLEKALKLNPDD--PLWLLAYADALEQAGR-KDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccc--cccccccccccccccc-ccccccccc
Confidence 999999999999999 8999999999988774 666666443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=131.98 Aligned_cols=322 Identities=13% Similarity=0.057 Sum_probs=225.2
Q ss_pred hhhhccccHHHHHHHHHHHhcccc-----------------------------cchhhHHHHHHHHHHHHHhCCCCHHHH
Q 000330 985 KLKQVELSNEQCVEMALLILNQDA-----------------------------NKLEGMKKALSLLSRALEADPTSEILW 1035 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~-----------------------------n~~g~ydAALdLLsrALEINPtSaeaW 1035 (1652)
-||-+|.-++.||-+|--+..+.. ...|++..|..-|.+|+++.|.=+++|
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 455567777999998865555542 135667778888999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh
Q 000330 1036 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1110 (1652)
Q Consensus 1036 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~ 1110 (1652)
..|+..|...|+-.++...|++||+++| ||. |+..|-..+ .|++|+..|+++..-. |.-
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~--------~~d~Avs~Y~rAl~lr-pn~------ 285 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEAR--------IFDRAVSCYLRALNLR-PNH------ 285 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHh--------cchHHHHHHHHHHhcC-Ccc------
Confidence 9999999999998999999999999997 443 777777777 7899999998876654 332
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh-----------hHHHHH-HHHh
Q 000330 1111 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----------WVCCVY-LVIY 1178 (1652)
Q Consensus 1111 iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----------WL~~iY-llrY 1178 (1652)
-.+.--|.-.|-.+|.+|-||.++.|-.. ..|+ .--+.=-+--..+|+.-. .||-.| +.-|
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-----~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-----LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-----cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 33444556678899999999999988775 2331 111111111112222222 333334 2222
Q ss_pred hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhh---hchhhHhHH---HHHHH
Q 000330 1179 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN---LRSAHCFAV---NHIWC 1252 (1652)
Q Consensus 1179 rvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~---~kt~~~fKL---N~IR~ 1252 (1652)
=+|++|+--++-.+|-.+ |...+...|+-+.+...+| ..|.+ -|+-+.+..-+ .++..-|+- |+.--
T Consensus 359 --NLgni~~E~~~~e~A~~l---y~~al~v~p~~aaa~nNLa-~i~kq-qgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 359 --NLGNIYREQGKIEEATRL---YLKALEVFPEFAAAHNNLA-SIYKQ-QGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred --HHHHHHHHhccchHHHHH---HHHHHhhChhhhhhhhhHH-HHHHh-cccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 268999999999999999 9999999999999999996 66665 22222111112 222233332 43333
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000330 1253 MAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1330 (1652)
Q Consensus 1253 lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1330 (1652)
|-..+|.+.|+..+.+++...|+=++- -|.+.|=... ...+|+..|++||.+.||-+. .-|-..-.+|+.-...|+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPDfpd-A~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPDFPD-AYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCCCch-hhhHHHHHHHHHhcccch
Confidence 444669999999999999999999999 6777774443 377999999999999999888 344445566666677777
Q ss_pred HHHHHHHH
Q 000330 1331 DFAAELMD 1338 (1652)
Q Consensus 1331 d~ai~Lc~ 1338 (1652)
|+-.+-+.
T Consensus 510 d~~~~kl~ 517 (966)
T KOG4626|consen 510 DKRMKKLV 517 (966)
T ss_pred HHHHHHHH
Confidence 76554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-09 Score=125.99 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=98.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---------CCchHHHHHHHHHhhCCCCHH----HHHHHHhcC
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT---------NSVGKDDMFSYSVKHNEGSYA----LWLMYINSR 1076 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~---------~~eea~emlekAVelnP~NY~----LwlmYInsr 1076 (1652)
..+.++.|+.+|.+|++++|+.+.+|..++.+|.... ...++.+.+++|++++|++.. ++.+|...+
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 4577899999999999999999999999988765332 135688999999999999988 555667777
Q ss_pred CCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1077 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1077 ~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.|++|+..|+++.+.+ |+. .+.++.+..+|.+.|++++|+..+.+...
T Consensus 353 --------~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 353 --------EYIVGSLLFKQANLLS-PIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred --------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7899999999999998 565 78899999999999999999998888775
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=126.88 Aligned_cols=358 Identities=15% Similarity=0.119 Sum_probs=239.6
Q ss_pred hhhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000330 983 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKH 1061 (1652)
Q Consensus 983 i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-aeaWy~yl~lY~~~~~~eea~emlekAVel 1061 (1652)
.+=|.++|-.+-..|=-|...+|- ++|-.|+.+|..+|.++|.. +.+-+-.++.|-+++..+.+.-.|++|.++
T Consensus 154 ~~Vl~~sp~Nil~LlGkA~i~ynk-----kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 154 HFVLKQSPDNILALLGKARIAYNK-----KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred HHHHhhCCcchHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 345677777777777777776665 56899999999999999984 445455556777778888999999999999
Q ss_pred CCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000330 1062 NEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1062 nP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1139 (1652)
+|.+-. +++-++... +.+ ...|.+|++.+-+.+.-+ +.. -+++..|..-|.+.|+|..+++.-...+
T Consensus 229 dp~~v~alv~L~~~~l~--~~d-~~s~~~~~~ll~~ay~~n-~~n-------P~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLN--FND-SDSYKKGVQLLQRAYKEN-NEN-------PVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred ChhhHHHHHHHHHHHHH--ccc-hHHHHHHHHHHHHHHhhc-CCC-------cHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 997776 445444444 122 248999999999998888 455 7999999999999999999999333333
Q ss_pred ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHH-HHHHHH
Q 000330 1140 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQR-AIKLIE 1218 (1652)
Q Consensus 1140 q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdn-alAL~s 1218 (1652)
..+ .+.. +++ ....|+.. -|...|...+||.. |.+.++.+|++ ++.++.
T Consensus 298 ~~t---~~~~-----------~~a-es~Y~~gR------------s~Ha~Gd~ekA~~y---Y~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 298 KNT---ENKS-----------IKA-ESFYQLGR------------SYHAQGDFEKAFKY---YMESLKADNDNFVLPLVG 347 (1018)
T ss_pred Hhh---hhhH-----------HHH-HHHHHHHH------------HHHhhccHHHHHHH---HHHHHccCCCCccccccc
Confidence 211 0110 011 11124433 33444555566666 55555555555 333333
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhh-c-cc-CC
Q 000330 1219 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQK-H-DF-GD 1293 (1652)
Q Consensus 1219 mA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~-K-~m-~~ 1293 (1652)
+ .+-+|..++.+++.-.|+++++.+|.+.+. .|-..|... + .+ -+
T Consensus 348 l------------------------------gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 348 L------------------------------GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred h------------------------------hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 2 344466779999999999999999999998 444444433 2 12 56
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCC
Q 000330 1294 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1373 (1652)
Q Consensus 1294 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~ 1373 (1652)
.|+.++.+++...|.+.. +|..+.++.... |.-...... ..|+|.|.....++++
T Consensus 398 ~a~~~l~K~~~~~~~d~~----a~l~laql~e~~-d~~~sL~~~--------------~~A~d~L~~~~~~ip~------ 452 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTPVDSE----AWLELAQLLEQT-DPWASLDAY--------------GNALDILESKGKQIPP------ 452 (1018)
T ss_pred HHHHHHHHHHhcccccHH----HHHHHHHHHHhc-ChHHHHHHH--------------HHHHHHHHHcCCCCCH------
Confidence 889999999999999999 998888866544 555444444 3577777766666643
Q ss_pred CcccccccccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhh-----ccCCc-HHHHHHHHHHHHhcCC-CCCCccc
Q 000330 1374 DPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKA-----AASEH-FKHCVREHAMLLLINE-SEPKEGA 1445 (1652)
Q Consensus 1374 vSDfy~~~~~q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALka-----np~N~-~i~cLNNYAYFLS~e~-~dL~KAe 1445 (1652)
-+|+. +-.++..|++.+|..-|++||+- |++++ -+.+=..|-.=.+++. .+-..|+
T Consensus 453 ----------------E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 453 ----------------EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred ----------------HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 33444 44445789999999999999966 44442 1122233433333333 3556666
Q ss_pred chhhhHHHH----HHHHhh
Q 000330 1446 PISWQLKLL----NSYLDR 1460 (1652)
Q Consensus 1446 qMS~~~KtV----sTYLDT 1460 (1652)
+| +|-| ++|+|-
T Consensus 517 e~---Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 517 EM---YKSILKEHPGYIDA 532 (1018)
T ss_pred HH---HHHHHHHCchhHHH
Confidence 64 3444 888885
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-08 Score=120.71 Aligned_cols=387 Identities=10% Similarity=-0.021 Sum_probs=246.6
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh--hCCCCHH---
Q 000330 995 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLLIFYSNTNSVGKDDMFSYSVK--HNEGSYA--- 1067 (1652)
Q Consensus 995 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~lY~~~~~~eea~emlekAVe--lnP~NY~--- 1067 (1652)
.|-.+...+... |+++.|+.+|....+.. +-++..|-.++..+.+.+....+.+.+...++ +.|+.+.
T Consensus 89 ~~~~~i~~l~~~-----g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 89 SLCSQIEKLVAC-----GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 455555555443 55799999999988754 34778899999999888887778888888775 4555444
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1147 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1147 (1652)
|..+|.+.+ .+++|+.+|.+|.. ++ .-.|..|+..|+..|++++|+..+.++.. .|..
T Consensus 164 Li~~y~k~g--------~~~~A~~lf~~m~~---~~--------~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~ 221 (697)
T PLN03081 164 VLLMHVKCG--------MLIDARRLFDEMPE---RN--------LASWGTIIGGLVDAGNYREAFALFREMWE---DGSD 221 (697)
T ss_pred HHHHHhcCC--------CHHHHHHHHhcCCC---CC--------eeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCC
Confidence 778898888 78999999999864 34 45789999999999999999999998874 3333
Q ss_pred cccchHH-HHHHhhccCCcchhhHHHHHHHHhh--------ccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHH
Q 000330 1148 RHSLFLS-DILTCLTISDKLIFWVCCVYLVIYR--------KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1218 (1652)
Q Consensus 1148 E~~lSLs-Ki~~YLt~sDR~~AWL~~iYllrYr--------vLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~s 1218 (1652)
+...+.. -+..|...++-..+.-...+.++.. ..+-+.|...|...+|..+ +....+. ++...-.
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~---~~vt~n~ 295 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV---FDGMPEK---TTVAWNS 295 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH---HHhCCCC---ChhHHHH
Confidence 3223333 3345555554433322222222222 2245677788888888776 5444322 3333334
Q ss_pred HHHHHHhhhcCCcchhhhh-------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhH--HHHHHHHhh
Q 000330 1219 MAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQK 1288 (1652)
Q Consensus 1219 mA~dYY~~~~ndesla~~~-------~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~-P~d~eL--~L~AAyL~~ 1288 (1652)
| +..|.. .|+-+.+... +.+.+..|=..+|+.+..+++.+.|..++..+++.. +.++.+ .|...|...
T Consensus 296 l-i~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 296 M-LAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred H-HHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 4 344443 3433333332 122233343355666666889999999999999986 555555 788888665
Q ss_pred cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----------H----hhhhccccccc
Q 000330 1289 HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF-----------H----SVWKVQYSQVE 1353 (1652)
Q Consensus 1289 K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff-----------~----gia~~Q~~~de 1353 (1652)
.. .++|..+|+++.. | |.. .|+-+|....+.|+.++|+++.++.. . ++++.+ ..++
T Consensus 374 G~-~~~A~~vf~~m~~--~-d~~----t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~ 444 (697)
T PLN03081 374 GR-MEDARNVFDRMPR--K-NLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQ 444 (697)
T ss_pred CC-HHHHHHHHHhCCC--C-Cee----eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHH
Confidence 44 8899999998754 3 555 79999999999999999999999822 1 111111 4555
Q ss_pred chhhhcccCC--CCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000330 1354 ISDPLVADMS--HSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1431 (1652)
Q Consensus 1354 ALDaLrkgns--~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1431 (1652)
+...|+.-.. .+.+ ....| ..|-++|.+ .|+++||+..|+++ ...|+- .+|+--+
T Consensus 445 a~~~f~~m~~~~g~~p------~~~~y-----------~~li~~l~r--~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll 501 (697)
T PLN03081 445 GWEIFQSMSENHRIKP------RAMHY-----------ACMIELLGR--EGLLDEAYAMIRRA-PFKPTV---NMWAALL 501 (697)
T ss_pred HHHHHHHHHHhcCCCC------Cccch-----------HhHHHHHHh--cCCHHHHHHHHHHC-CCCCCH---HHHHHHH
Confidence 6666553211 1111 11234 778888888 88888888888775 233432 3344333
Q ss_pred HHHhcCCCCCCcccchhh
Q 000330 1432 MLLLINESEPKEGAPISW 1449 (1652)
Q Consensus 1432 YFLS~e~~dL~KAeqMS~ 1449 (1652)
--.. ...+++.|+.+..
T Consensus 502 ~a~~-~~g~~~~a~~~~~ 518 (697)
T PLN03081 502 TACR-IHKNLELGRLAAE 518 (697)
T ss_pred HHHH-HcCCcHHHHHHHH
Confidence 2222 2334555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=119.13 Aligned_cols=300 Identities=9% Similarity=-0.081 Sum_probs=192.2
Q ss_pred hhccccHHHHHHH-----HHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000330 987 KQVELSNEQCVEM-----ALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1059 (1652)
Q Consensus 987 e~~~~d~qlWLel-----Al~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1059 (1652)
-..|.-...|... |...+.+.. ...|++..|...+.++.+..|+....+...+.++.++++.+.++++|++|.
T Consensus 66 ~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 66 FRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444444443 344444433 346889999999999999999988888888999999999999999999999
Q ss_pred hhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000330 1060 KHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1134 (1652)
Q Consensus 1060 elnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1134 (1652)
+..|++.. .+.+++..+ .|+.|+..++.+.+.. |+. .+++..+..+|.++|+++.|+..
T Consensus 146 ~~~p~~~l~~~~~~a~l~l~~~--------~~~~Al~~l~~l~~~~-P~~-------~~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 146 ELAGNDNILVEIARTRILLAQN--------ELHAARHGVDKLLEMA-PRH-------KEVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred HhCCcCchHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 99998852 477888888 8999999999999998 554 79999999999999999999998
Q ss_pred HHhhcccccCCCCcccchHHHHHHh---hccCCc--chh-----hHHH--HH--HHHhhccchHHHhhhhhhhhhhccCC
Q 000330 1135 ISRLLIPATGSNDRHSLFLSDILTC---LTISDK--LIF-----WVCC--VY--LVIYRKLPDAVLQLLECEKELFAIDW 1200 (1652)
Q Consensus 1135 i~rLEq~Al~g~sE~~lSLsKi~~Y---Lt~sDR--~~A-----WL~~--iY--llrYrvLPGd~y~q~e~~KEAf~I~W 1200 (1652)
+.++...... ++....-.....+ +...+. ... |-.. .+ ........+..+...|...+|+.+
T Consensus 210 l~~l~k~~~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~-- 285 (409)
T TIGR00540 210 IDNMAKAGLF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI-- 285 (409)
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH--
Confidence 8888863221 1111110111111 100000 000 1000 00 112222222333333333333332
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCch-
Q 000330 1201 PPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCL- 1277 (1652)
Q Consensus 1201 ~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~--LEDse~A~~LfdklLk~~P~d~- 1277 (1652)
..+.++..|++.... +-.++.++. .++.+.++.++++.++.+|.++
T Consensus 286 -l~~~l~~~pd~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~ 334 (409)
T TIGR00540 286 -IFDGLKKLGDDRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK 334 (409)
T ss_pred -HHHHHhhCCCcccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh
Confidence 222222222221100 012444433 3477888999999999999999
Q ss_pred -hHHHHHHHHhhcc-cCCccHHHHH--HHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000330 1278 -ELVLMKARLQKHD-FGDLSSVGFE--EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1342 (1652)
Q Consensus 1278 -eL~L~AAyL~~K~-m~~~A~svle--~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~ 1342 (1652)
.+.+...++..+. ...+|+..|+ .++...|++.. .. -|....++.|+.++|.++-++...
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~----~~-~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND----LA-MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7744444443332 2778999999 68888898876 22 568889999999999888776433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-07 Score=121.28 Aligned_cols=406 Identities=13% Similarity=0.105 Sum_probs=246.6
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA 1067 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~ 1067 (1652)
|...|=.+...|... |+++.|+.+|...++. .| +...|..++..+...+....+.+++..+++. .|+-+.
T Consensus 252 d~~s~n~li~~~~~~-----g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 252 DCISWNAMISGYFEN-----GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CcchhHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 445676666666654 5569999999998775 45 4556667777778888888888898888764 344444
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000330 1068 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1144 (1652)
Q Consensus 1068 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~ 1144 (1652)
|-.+|.+.+ .+++|+.+|++|.. ++ ...|..|+..|++.|++++|+..+.++.. .
T Consensus 326 ~n~Li~~y~k~g--------~~~~A~~vf~~m~~---~d--------~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~ 383 (857)
T PLN03077 326 CNSLIQMYLSLG--------SWGEAEKVFSRMET---KD--------AVSWTAMISGYEKNGLPDKALETYALMEQ---D 383 (857)
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHhhCCC---CC--------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH---h
Confidence 788999998 78999999999854 34 45799999999999999999999998875 3
Q ss_pred CCCcccchHHHHH-HhhccCCcchhhHHHHHHHHhhcc--------chHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000330 1145 SNDRHSLFLSDIL-TCLTISDKLIFWVCCVYLVIYRKL--------PDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1215 (1652)
Q Consensus 1145 g~sE~~lSLsKi~-~YLt~sDR~~AWL~~iYllrYrvL--------PGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalA 1215 (1652)
|..|...++..+. .|-..++-..+.-...+..+.+.. +-+.|...|+.++|+.+ +.+..+.+. ..
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~d~---vs 457 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV---FHNIPEKDV---IS 457 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH---HHhCCCCCe---ee
Confidence 3334344544444 555555554443333332222222 23556667777777666 444432211 11
Q ss_pred HHHHHHHHHhhhcCCcchhhhhh------hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhH--HHHHHHH
Q 000330 1216 LIEMAVNSVELYSNGESLEKETN------LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS-CLEL--VLMKARL 1286 (1652)
Q Consensus 1216 L~smA~dYY~~~~ndesla~~~~------~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~-d~eL--~L~AAyL 1286 (1652)
.-.| +..|.. .+.-..+...- .+.+..+=...|..+...++.+.+.+++..+++.... +.-+ .|...|.
T Consensus 458 ~~~m-i~~~~~-~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSI-IAGLRL-NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHH-HHHHHH-CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 1112 111211 11111111110 0111111122233333355667777777776665432 1222 5556664
Q ss_pred hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH---------------HHhhhhccccc
Q 000330 1287 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW---------------FHSVWKVQYSQ 1351 (1652)
Q Consensus 1287 ~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~f---------------f~gia~~Q~~~ 1351 (1652)
.... .++|+.+|+.. +.+.. .|+-+|....+.|+.++|+++.++- +.++++.+ .-
T Consensus 536 k~G~-~~~A~~~f~~~----~~d~~----s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v 605 (857)
T PLN03077 536 RCGR-MNYAWNQFNSH----EKDVV----SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG-MV 605 (857)
T ss_pred HcCC-HHHHHHHHHhc----CCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hH
Confidence 4443 67888888775 55666 8999999999999999999999871 11122111 44
Q ss_pred ccchhhhcccC--CCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHH
Q 000330 1352 VEISDPLVADM--SHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVRE 1429 (1652)
Q Consensus 1352 deALDaLrkgn--s~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNN 1429 (1652)
++|+..|..-. ..+.+ ..+. |..|.++|.+ .|+++||...|++. ...|+-.+..+|.+
T Consensus 606 ~ea~~~f~~M~~~~gi~P------~~~~-----------y~~lv~~l~r--~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITP------NLKH-----------YACVVDLLGR--AGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHHHHHHHHhCCCC------chHH-----------HHHHHHHHHh--CCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 55666555321 11111 1233 4899999999 99999999999985 46676545555555
Q ss_pred HHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc
Q 000330 1430 HAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL 1469 (1652)
Q Consensus 1430 YAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~ 1469 (1652)
|+.+ ..+++.|+.+.. +++ .+|... +|++...++
T Consensus 666 -ac~~---~~~~e~~e~~a~--~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 666 -ACRI---HRHVELGELAAQ--HIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred -HHHH---cCChHHHHHHHH--HHHhhCCCCcchHHHHHHHHHHCCC
Confidence 3322 456777776655 444 344444 777777777
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-07 Score=109.17 Aligned_cols=276 Identities=16% Similarity=0.186 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh-------CCCC------HHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEA-------DPTS------EILWITYLLIFYSNTNSVGKDDMFSYSVK 1060 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI-------NPtS------aeaWy~yl~lY~~~~~~eea~emlekAVe 1060 (1652)
+.-+..|+.+|-.... +.|+.|.+.+...... |--+ ++++.+-+-++.-.++..++++.|.+||+
T Consensus 277 Da~l~~~l~~l~~~~~--e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 277 DAALAEALEALEKGLE--EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred hhhHHHHHHHHHhhCc--hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 4445555555554433 4566666555443321 1111 34444444444455667789999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000330 1061 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1136 (1652)
Q Consensus 1061 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~ 1136 (1652)
+.|.+-. ++.+|+... +=++....|-.+..-+ |.. -|+++.+.|++...++|+.|+.-
T Consensus 355 l~~~~~~lyI~~a~~y~d~~--------~~~~~~~~F~~A~~ld-p~n-------~dvYyHRgQm~flL~q~e~A~aD-- 416 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADEN--------QSEKMWKDFNKAEDLD-PEN-------PDVYYHRGQMRFLLQQYEEAIAD-- 416 (606)
T ss_pred cCcccchHHHHHHHHHhhhh--------ccHHHHHHHHHHHhcC-CCC-------CchhHhHHHHHHHHHHHHHHHHH--
Confidence 9987655 778888776 4567777776555555 666 89999999999999999999981
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000330 1137 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1216 (1652)
Q Consensus 1137 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1216 (1652)
++ +....+|+++++.
T Consensus 417 --F~---------------------------------------------------------------Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 417 --FQ---------------------------------------------------------------KAISLDPENAYAY 431 (606)
T ss_pred --HH---------------------------------------------------------------HHhhcChhhhHHH
Confidence 11 1122478999999
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCcc
Q 000330 1217 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLS 1295 (1652)
Q Consensus 1217 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A 1295 (1652)
+.+++-.|++ ...+++...|....+.-|.|+++ .+.+.-|.-++.=++|
T Consensus 432 iQl~~a~Yr~------------------------------~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 432 IQLCCALYRQ------------------------------HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 9987666663 04567888999999999999999 8998888776668899
Q ss_pred HHHHHHHHHhCCC------CCc-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCC
Q 000330 1296 SVGFEEALIKWPK------GVP-GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1368 (1652)
Q Consensus 1296 ~svle~AL~~~Pk------Na~-g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~e 1368 (1652)
...|+.|+.++|+ |+. ++..+ ++...|. +++++|+.||++ ++. +.+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka---~l~~qwk-~d~~~a~~Ll~K-----------------A~e-----~Dp- 534 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKA---LLVLQWK-EDINQAENLLRK-----------------AIE-----LDP- 534 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhh---Hhhhchh-hhHHHHHHHHHH-----------------HHc-----cCc-
Confidence 9999999999999 665 44433 2444576 699999999976 222 111
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHH
Q 000330 1369 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1430 (1652)
Q Consensus 1369 s~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNY 1430 (1652)
.+| | ++.+++-....+|+.+||.+.||+++.++... ..-++=|
T Consensus 535 -----kce-------~-----A~~tlaq~~lQ~~~i~eAielFEksa~lArt~--~E~~~a~ 577 (606)
T KOG0547|consen 535 -----KCE-------Q-----AYETLAQFELQRGKIDEAIELFEKSAQLARTE--SEMVHAY 577 (606)
T ss_pred -----hHH-------H-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 122 3 78787766666999999999999999999876 4444433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-08 Score=113.45 Aligned_cols=156 Identities=24% Similarity=0.285 Sum_probs=128.5
Q ss_pred hhhhccccHHHHHHHHHHHhcccc-------cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHH
Q 000330 985 KLKQVELSNEQCVEMALLILNQDA-------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 1057 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~-------n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlek 1057 (1652)
.+...|.|+++||+++...-.-.. ....-.+..+++|.+||+.||.+..+|..|+.++.+.-..+.+.+.+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 678889999999999954333221 2234467889999999999999999999999999999888889999999
Q ss_pred HHhhCCCCHHHHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC---CCCcchhhhhhHHHHHHHHHHHHHhcCH
Q 000330 1058 SVKHNEGSYALWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS---DGDEMHASACILDLFLQMLQCFCMSGNT 1128 (1652)
Q Consensus 1058 AVelnP~NY~LwlmYInsr~------slddrl~~YdkAI~aLe~las~~---~~Dr~~~Sa~iLDILL~LvqLY~qSGny 1128 (1652)
+++.+|+++.||..||+..- ++.+-...|.+++..|....... ..+..+..-.++++++.+..+..++|-.
T Consensus 91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 99999999999999999653 35667778888888886654432 1234456779999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 000330 1129 EKAIQRISRLLI 1140 (1652)
Q Consensus 1129 dKAI~ti~rLEq 1140 (1652)
+.|++.+..+..
T Consensus 171 E~Ava~~Qa~lE 182 (321)
T PF08424_consen 171 ERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999998888775
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.7e-07 Score=90.30 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=104.7
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000330 991 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1067 (1652)
Q Consensus 991 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1067 (1652)
...+.++.+|..++.. |+++.|+..|.++++.+|+++.+|+.++.+|...+...++.++|++|+++.|.+..
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3457788888888776 45799999999999999999999999999999999888899999999999988765
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC-CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1068 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASD-GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1068 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~-~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
++.+|...+ .|++|+..|.+.....+ +.. .+++..+..+|...|++++|+..+.+...
T Consensus 104 ~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 104 NYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQP-------ARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHcc--------cHHHHHHHHHHHHhccccccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777 78899998888766421 122 46677788888899999999887766664
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=116.41 Aligned_cols=192 Identities=14% Similarity=0.002 Sum_probs=145.9
Q ss_pred hhhhccccHHHHHHHHHHHhcccc----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000330 985 KLKQVELSNEQCVEMALLILNQDA----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1060 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVe 1060 (1652)
-++..|.....|..+|.-++.... ...+.++.|...+.+|++++|+++.+|..++.++...+...++...|++|++
T Consensus 287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345557777888888876553321 2456789999999999999999999999999999999999999999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000330 1061 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1136 (1652)
Q Consensus 1061 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~ 1136 (1652)
++|++.. ++..|...+ .|++|+..|+++.+.+ |+. ....+.++.++...|++++|+..+.
T Consensus 367 l~P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~-P~~-------~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAG--------QLEEALQTINECLKLD-PTR-------AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCC-------hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999876 666777777 7899999999999888 453 3344444555667899999999777
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000330 1137 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1216 (1652)
Q Consensus 1137 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1216 (1652)
++.. .. .| .+. .+..++|.+|...|..+||... +.++...+|+...+.
T Consensus 431 ~~l~--~~--~p--------------~~~-----------~~~~~la~~l~~~G~~~eA~~~---~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 431 ELRS--QH--LQ--------------DNP-----------ILLSMQVMFLSLKGKHELARKL---TKEISTQEITGLIAV 478 (553)
T ss_pred HHHH--hc--cc--------------cCH-----------HHHHHHHHHHHhCCCHHHHHHH---HHHhhhccchhHHHH
Confidence 6653 11 11 111 1223457777888999999888 788888888888888
Q ss_pred HHHHHHHHh
Q 000330 1217 IEMAVNSVE 1225 (1652)
Q Consensus 1217 ~smA~dYY~ 1225 (1652)
..++ .+|.
T Consensus 479 ~~l~-~~~~ 486 (553)
T PRK12370 479 NLLY-AEYC 486 (553)
T ss_pred HHHH-HHHh
Confidence 7774 4443
|
|
| >PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-09 Score=80.63 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=21.1
Q ss_pred cceeecccc-cccCCCCchhhhh
Q 000330 839 PLCMYELRG-KCNNDECPWQHVK 860 (1652)
Q Consensus 839 ~lC~fel~G-~CNd~~C~wQH~~ 860 (1652)
|||+|||+| +|||++|.|||+|
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCCCCCCccccC
Confidence 699999998 9999999999996
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-06 Score=110.12 Aligned_cols=272 Identities=13% Similarity=0.066 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhh
Q 000330 1012 EGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~ 1085 (1652)
++++.|+.+|....+.... +..+|..++..|.+.+.-.++.+.|+...+.. |+... |...|.+.+ .
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--------~ 522 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--------Q 522 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------C
Confidence 5567888888888776544 56777788888888887777778887777543 32222 555666666 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000330 1086 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1163 (1652)
Q Consensus 1086 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1163 (1652)
+++|+.+|.+|.+.. .|| .-++..|+..|++.|++++|.+.+..+... ..|..|...+.. -|..|...+
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD--------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPD--------RVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCC
Confidence 788888887775542 355 567788888888888888888877776531 122223112222 222344444
Q ss_pred CcchhhHHHHHHH---------HhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000330 1164 DKLIFWVCCVYLV---------IYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1234 (1652)
Q Consensus 1164 DR~~AWL~~iYll---------rYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1234 (1652)
+-..|+-.+.... .|..| ...|.+.|...+|+. ++... . . .
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsL-I~ay~k~G~~deAl~------------------lf~eM-~---~-~------ 643 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIA-VNSCSQKGDWDFALS------------------IYDDM-K---K-K------ 643 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhcCCHHHHHH------------------HHHHH-H---H-c------
Confidence 3322211111111 11111 112222222222222 22110 0 0 0
Q ss_pred hhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCC
Q 000330 1235 KETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--PSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKG 1309 (1652)
Q Consensus 1235 ~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkN 1309 (1652)
.-..+..+=..+|..+...++.+.|.++|+.+.+.. |...-. .|..+|....+ .++|+.+|+++... .|+
T Consensus 644 ---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd- 718 (1060)
T PLN03218 644 ---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT- 718 (1060)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-
Confidence 001111111233444445678888888888888764 333333 77777765554 77888888887653 443
Q ss_pred CchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1310 VPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1310 a~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
.. .|+.||....+.|++++|.++..+
T Consensus 719 vv----tyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 719 VS----TMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23 688888888888888888888876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-06 Score=104.45 Aligned_cols=338 Identities=10% Similarity=0.025 Sum_probs=187.5
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH-
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA- 1067 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~- 1067 (1652)
|...|=.+...+... |+++.|+.+|...++..+. +...|..++..+...+.-..+.+.+..+++.. |+-+.
T Consensus 188 ~~~t~n~li~~~~~~-----g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~ 262 (697)
T PLN03081 188 NLASWGTIIGGLVDA-----GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262 (697)
T ss_pred CeeeHHHHHHHHHHC-----cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence 344555555555544 5578888888888876553 45667777777777777666777777666543 22222
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000330 1068 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1145 (1652)
Q Consensus 1068 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g 1145 (1652)
|-.+|.+.+ .+++|+.+|++|... + ...|-.|+..|++.|++++|+..+.++.. .|
T Consensus 263 n~Li~~y~k~g--------~~~~A~~vf~~m~~~---~--------~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g 320 (697)
T PLN03081 263 CALIDMYSKCG--------DIEDARCVFDGMPEK---T--------TVAWNSMLAGYALHGYSEEALCLYYEMRD---SG 320 (697)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHhCCCC---C--------hhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC
Confidence 778999988 789999999888543 3 56899999999999999999999988874 33
Q ss_pred CCcccchHHH-HHHhhccCCcchhhHHHHHHHHhhc--------cchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000330 1146 NDRHSLFLSD-ILTCLTISDKLIFWVCCVYLVIYRK--------LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1216 (1652)
Q Consensus 1146 ~sE~~lSLsK-i~~YLt~sDR~~AWL~~iYllrYrv--------LPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1216 (1652)
..+...+... +..|...++-..+.-...+.++.+. .+.+.|...|.-++|..+ +....+ | ++...
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v---f~~m~~--~-d~~t~ 394 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV---FDRMPR--K-NLISW 394 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH---HHhCCC--C-CeeeH
Confidence 3332334333 4456655554444222222222211 122333344444444433 222211 1 11111
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCchhH-HHHHHHHhhcccCC
Q 000330 1217 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK--LYPSCLEL-VLMKARLQKHDFGD 1293 (1652)
Q Consensus 1217 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk--~~P~d~eL-~L~AAyL~~K~m~~ 1293 (1652)
- .+|..|...++.++|+++|+++++ ..|+.+.. .|..++-... ..+
T Consensus 395 n------------------------------~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~ 443 (697)
T PLN03081 395 N------------------------------ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSE 443 (697)
T ss_pred H------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHH
Confidence 1 224444445566666666666554 23444444 4444443322 255
Q ss_pred ccHHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHH---hhhhcccccccchhhhc
Q 000330 1294 LSSVGFEEALIK---WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFH---SVWKVQYSQVEISDPLV 1359 (1652)
Q Consensus 1294 ~A~svle~AL~~---~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~--------ff~---gia~~Q~~~deALDaLr 1359 (1652)
+|..+|+.+... .|+-. .|.-+|...-+.|++++|.++.++ .|. +.+......+.|..+++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~-----~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAM-----HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHhcCCCCCcc-----chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 566666665543 22221 234445666666666666665544 011 11111112233333333
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000330 1360 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1417 (1652)
Q Consensus 1360 kgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1417 (1652)
+.... .+. ....| .+|..+|.. .|+++||...++.....
T Consensus 519 ~l~~~-----~p~-~~~~y-----------~~L~~~y~~--~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 519 KLYGM-----GPE-KLNNY-----------VVLLNLYNS--SGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCC-----CCC-CCcch-----------HHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 22111 111 12345 788889999 99999999999876643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=102.10 Aligned_cols=355 Identities=13% Similarity=0.035 Sum_probs=222.4
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1067 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1067 (1652)
+.|++--+++-...|.. ++|..||.-|-.|+|.||++=.++|.-+-.|..+|....+..-|.+-+++-|+=+.
T Consensus 35 ~advekhlElGk~lla~-----~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 35 PADVEKHLELGKELLAR-----GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 55666666666665554 66799999999999999999999999999999999988899999999999997665
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC---cchhh--hhhHHHHH--HHHHHHHHhcCHHHHHHHHHhh
Q 000330 1068 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD---EMHAS--ACILDLFL--QMLQCFCMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1068 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D---r~~~S--a~iLDILL--~LvqLY~qSGnydKAI~ti~rL 1138 (1652)
-+.+.++++ .++.|..=+.......+.. ++..| +-|.+-+. +++.-+.-+|++..||..|+.|
T Consensus 110 iQRg~vllK~G--------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 110 IQRGVVLLKQG--------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHhchhhhhcc--------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 556778888 8899988887666655222 12222 23444443 3444455678999999999999
Q ss_pred cccccCCCCcccchHHHHH--HhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000330 1139 LIPATGSNDRHSLFLSDIL--TCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1216 (1652)
Q Consensus 1139 Eq~Al~g~sE~~lSLsKi~--~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1216 (1652)
+. ..+=+.+|-.++ -|+..++. ...||+++. +.+-.-|+.-.+
T Consensus 182 lE-----i~~Wda~l~~~Rakc~i~~~e~----k~AI~Dlk~--------------------------askLs~DnTe~~ 226 (504)
T KOG0624|consen 182 LE-----IQPWDASLRQARAKCYIAEGEP----KKAIHDLKQ--------------------------ASKLSQDNTEGH 226 (504)
T ss_pred Hh-----cCcchhHHHHHHHHHHHhcCcH----HHHHHHHHH--------------------------HHhccccchHHH
Confidence 86 333122332222 23333333 233444433 212222444455
Q ss_pred HHHHHHHHhhhcCCcchhhhh-------hhchhhHhHH-----------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchh
Q 000330 1217 IEMAVNSVELYSNGESLEKET-------NLRSAHCFAV-----------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLE 1278 (1652)
Q Consensus 1217 ~smA~dYY~~~~ndesla~~~-------~~kt~~~fKL-----------N~IR~lI~LEDse~A~~LfdklLk~~P~d~e 1278 (1652)
++++-=+|. +|+-+.+-.. ++.--.|||- .-+.+.|...+++.|++-..++|+..|+.+.
T Consensus 227 ykis~L~Y~--vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 227 YKISQLLYT--VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 555444666 4443333221 2222233332 0133333344999999999999999999877
Q ss_pred HHHH-----HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccc
Q 000330 1279 LVLM-----KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVE 1353 (1652)
Q Consensus 1279 L~L~-----AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~de 1353 (1652)
+.+- +.-....+.+.+|+.++.++|.++|+++. +..+-++..+-.+.||.||.--+....--... .+-.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~----~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~re 379 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ----VLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRARE 379 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHH
Confidence 7222 22223333477999999999999999999 44444777777778888887654422111111 12222
Q ss_pred chhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHH-HHhhccCC
Q 000330 1354 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA-ALKAAASE 1421 (1652)
Q Consensus 1354 ALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDK-ALkanp~N 1421 (1652)
.++--++.-.+. -.-|+| -|||.=.- -+..|-..||-| |.+|-|+|
T Consensus 380 Gle~Akrlkkqs-------~kRDYY-----------KILGVkRn----AsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 380 GLERAKRLKKQS-------GKRDYY-----------KILGVKRN----ASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHh-------ccchHH-----------HHhhhccc----ccHHHHHHHHHHHHHhcCCcc
Confidence 233222221221 236888 78887443 356677788877 57999999
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-06 Score=100.08 Aligned_cols=286 Identities=9% Similarity=0.000 Sum_probs=182.7
Q ss_pred HHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHH
Q 000330 1041 IFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFL 1116 (1652)
Q Consensus 1041 lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL 1116 (1652)
+-...|....+...+.++.++.|+... .+..+...+ .+++|...|.+..+.++.+. +.+.+
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--------~~~~A~~~l~~a~~~~p~~~-------l~~~~ 157 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--------DEARANQHLEEAAELAGNDN-------ILVEI 157 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCcCc-------hHHHH
Confidence 334667788899999999999987533 456777778 89999999999888874444 56777
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhh
Q 000330 1117 QMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELF 1196 (1652)
Q Consensus 1117 ~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf 1196 (1652)
..++++.++|++++|+..+.++.. ....++ .....-...|+..+|- +++.
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~-~~l~ll~~~~~~~~d~---------------------------~~a~ 207 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLE--MAPRHK-EVLKLAEEAYIRSGAW---------------------------QALD 207 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhH---------------------------HHHH
Confidence 789999999999999999999886 222232 3333333344444443 3332
Q ss_pred ccCCCCcccch---hhHHHHHHHHHHHH-HHHhh---hcCCcchhhhh--hh---chhhHhHHHHHHHHHHhcCHHHHHH
Q 000330 1197 AIDWPPVQLED---DEKQRAIKLIEMAV-NSVEL---YSNGESLEKET--NL---RSAHCFAVNHIWCMAVLNGLECSMN 1264 (1652)
Q Consensus 1197 ~I~W~y~~vlk---~EPdnalAL~smA~-dYY~~---~~ndesla~~~--~~---kt~~~fKLN~IR~lI~LEDse~A~~ 1264 (1652)
.+ +..+++ .+|.....+..++. ..... ..+-+.+..-. .+ +-...+-+.+...++..++.++|.+
T Consensus 208 ~~---l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 208 DI---IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 22 222221 12222211111110 00100 00000110000 11 1133444455666677889999999
Q ss_pred HHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000330 1265 LLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELMD 1338 (1652)
Q Consensus 1265 LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL~~~PkNa--~g~~caW~QLIq~al~~en~d~ai~Lc~ 1338 (1652)
++.+.++..|++..+ .....++... .+..++..+++++...|+++ . +...|...+.+.|+|++|.+..+
T Consensus 285 ~l~~~l~~~pd~~~~~~~~l~~~~~l~~~-~~~~~~~~~e~~lk~~p~~~~~~----ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 285 IIFDGLKKLGDDRAISLPLCLPIPRLKPE-DNEKLEKLIEKQAKNVDDKPKCC----INRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHhhCCCcccchhHHHHHhhhcCCC-ChHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999974 3333333332 26678899999999999999 6 67777889999999999998774
Q ss_pred HHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000330 1339 RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1418 (1652)
Q Consensus 1339 ~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1418 (1652)
+ ..++.. .| | . ....-++..+++ .|+.++|...|.++|+..
T Consensus 360 ~---------------a~a~~~--~p-----------~-------~--~~~~~La~ll~~--~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 360 N---------------VAACKE--QL-----------D-------A--NDLAMAADAFDQ--AGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred H---------------hHHhhc--CC-----------C-------H--HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 2 001110 01 1 0 012677888888 999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-06 Score=101.26 Aligned_cols=144 Identities=15% Similarity=0.046 Sum_probs=94.9
Q ss_pred hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHH--HHHHHcCCh
Q 000330 1256 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYV--EYALQNGRH 1330 (1652)
Q Consensus 1256 LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLI--q~al~~en~ 1330 (1652)
.++...+...|+.+++++|....| -+.+.|++..+ +++....|..|..++|.|+. ||+..=+-+| +++-...++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~-~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ-SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc-cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999996 88888888887 99999999999999999999 5554422111 122233344
Q ss_pred HHHHHHHHH---HHH--hhhhccc-ccccchhhhccc--CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc
Q 000330 1331 DFAAELMDR---WFH--SVWKVQY-SQVEISDPLVAD--MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1402 (1652)
Q Consensus 1331 d~ai~Lc~~---ff~--gia~~Q~-~~deALDaLrkg--ns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg 1402 (1652)
++++.|--. -|- +++.|.. +-.++..+|... -+|. -++.| .+.+.+|-- ++
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------~~Evy-----------~~fAeiLtD--qq 476 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------CPEVY-----------NLFAEILTD--QQ 476 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHH-----------HHHHHHHhh--HH
Confidence 444444333 111 1222211 333344444333 2221 24556 677777777 78
Q ss_pred CHHHHHHHHHHHHhhccCC
Q 000330 1403 DWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1403 ~~~EAfaAYDKALkanp~N 1421 (1652)
+++.|..-||+|+...|.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred hHHHHHHHHHHHHhhcccc
Confidence 8888888888888888875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-05 Score=105.50 Aligned_cols=339 Identities=11% Similarity=0.085 Sum_probs=189.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhhH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDAY 1086 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~Y 1086 (1652)
+.++.|+.+|....+ | +...|-.++..|.+.+...++.++|++..+.. |+.+. |..+|.+.+ .+
T Consensus 420 g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--------~v 488 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--------KV 488 (1060)
T ss_pred CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--------CH
Confidence 345556655554443 3 45566666666666666666666666666542 32222 556666665 55
Q ss_pred HHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000330 1087 DAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1165 (1652)
Q Consensus 1087 dkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1165 (1652)
++|+++|++|.... .|| ...|..|+..|++.|++++|++.+..+.. .|..|..
T Consensus 489 d~A~~vf~eM~~~Gv~Pd--------vvTynaLI~gy~k~G~~eeAl~lf~~M~~---~Gv~PD~--------------- 542 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEAN--------VHTFGALIDGCARAGQVAKAFGAYGIMRS---KNVKPDR--------------- 542 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH---cCCCCCH---------------
Confidence 67777776666542 234 45666777777777777777776665553 2222211
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch----hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhh--
Q 000330 1166 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED----DEKQRAIKLIEMAVNSVELYSNGESLEKETNL-- 1239 (1652)
Q Consensus 1166 ~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk----~EPdnalAL~smA~dYY~~~~ndesla~~~~~-- 1239 (1652)
..|..| -..|.+.|..++|+.+ +....+ ..|+.... ..+ ++.|.. .|+-+.+...-.
T Consensus 543 ----------vTYnsL-I~a~~k~G~~deA~~l---f~eM~~~~~gi~PD~vTy-naL-I~ay~k-~G~ldeA~elf~~M 605 (1060)
T PLN03218 543 ----------VVFNAL-ISACGQSGAVDRAFDV---LAEMKAETHPIDPDHITV-GAL-MKACAN-AGQVDRAKEVYQMI 605 (1060)
T ss_pred ----------HHHHHH-HHHHHHCCCHHHHHHH---HHHHHHhcCCCCCcHHHH-HHH-HHHHHH-CCCHHHHHHHHHHH
Confidence 112221 1223333444444444 333321 23443211 122 232322 333232222211
Q ss_pred ---ch--hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCC-CCC
Q 000330 1240 ---RS--AHCFAVNHIWCMAVLNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWP-KGV 1310 (1652)
Q Consensus 1240 ---kt--~~~fKLN~IR~lI~LEDse~A~~LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~P-kNa 1310 (1652)
.+ ...+=-.+|..|...++.++|..+|+.+.+. .|+.... .|..+|....+ .++|..+|+.++.... -+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCH
Confidence 11 1111113466666678999999999999887 6776666 77777765554 7889999999887542 233
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHh-hhhc-cc-ccccchhhhcccCCCCCCCCCCCCCcc
Q 000330 1311 PGIQCIWNQYVEYALQNGRHDFAAELMDRW-----------FHS-VWKV-QY-SQVEISDPLVADMSHSSPESTSTSDPE 1376 (1652)
Q Consensus 1311 ~g~~caW~QLIq~al~~en~d~ai~Lc~~f-----------f~g-ia~~-Q~-~~deALDaLrkgns~i~~es~s~~vSD 1376 (1652)
. .|+-||....+.|++++|.++.... |.. |.-+ +. +.++|+++|+.-... .+..|
T Consensus 685 ~----tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-------Gi~Pd 753 (1060)
T PLN03218 685 V----SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-------GLCPN 753 (1060)
T ss_pred H----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCC
Confidence 3 7889999999999999999998762 111 1111 11 667777777743111 11123
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh--ccCCcHHHHH
Q 000330 1377 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA--AASEHFKHCV 1427 (1652)
Q Consensus 1377 fy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka--np~N~~i~cL 1427 (1652)
. .+|..|-.++.+ .|++++|...|+.+++. .|+-....||
T Consensus 754 ~---------~Ty~sLL~a~~k--~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 754 T---------ITYSILLVASER--KDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred H---------HHHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1 234555567777 88999999999988854 4444333344
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.2e-06 Score=92.68 Aligned_cols=124 Identities=12% Similarity=-0.025 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----H
Q 000330 993 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1068 (1652)
Q Consensus 993 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----L 1068 (1652)
.+.|..++..+... |.++.|...|.++|+++|+.+.+|+.++.+|...+...++.+.|++|++++|++.. +
T Consensus 64 a~~~~~~g~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSL-----GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36788888876655 45699999999999999999999999999999999999999999999999999876 5
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000330 1069 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1069 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1138 (1652)
+..|...+ .|++|++.|.+..+.+|.+. .......+....+++++|+..+.+.
T Consensus 139 g~~l~~~g--------~~~eA~~~~~~al~~~P~~~---------~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 139 GIALYYGG--------RYELAQDDLLAFYQDDPNDP---------YRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 56677777 88999999999999884332 1122223445678899999977543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=98.57 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000330 1011 LEGMKKALSLLSRALEA---DPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1082 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEI---NPtS-aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1082 (1652)
.+..+.++.-|...|+. +|.. +.+|+.++.+|...+...++...|++|++++|++.. ++.+|...+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------ 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG------ 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------
Confidence 45668899999999974 4443 778999999999999999999999999999999877 677888888
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1083 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1083 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.|++|+..|.+..+.. |+. .+.++.+..+|...|+++.|++.+.+...
T Consensus 113 --~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 113 --NFDAAYEAFDSVLELD-PTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred --CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999998887 565 78899999999999999999998877775
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.6e-06 Score=104.09 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=190.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH---HHHHHHhcCCCcccchhh
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA---LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~---LwlmYInsr~slddrl~~ 1085 (1652)
.|+++.|..+|....+ .+...|..++..|.+.+..+++.++|+...+. .|+.+. +...|.+.+ .
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--------~ 404 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--------D 404 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--------h
Confidence 3667888888887543 45677888888888888888888888866543 366555 444556666 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000330 1086 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1163 (1652)
Q Consensus 1086 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1163 (1652)
+++|.++++.+.+.. .++ ..++-.|++.|+..|++++|++.++++.. .+ ..+.. -|..|.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~--------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d--~vs~~~mi~~~~--- 466 (857)
T PLN03077 405 LDVGVKLHELAERKGLISY--------VVVANALIEMYSKCKCIDKALEVFHNIPE-----KD--VISWTSIIAGLR--- 466 (857)
T ss_pred HHHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CC--eeeHHHHHHHHH---
Confidence 788888888877653 233 56788899999999999999997777653 11 11211 222222
Q ss_pred CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhh-----
Q 000330 1164 DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKET----- 1237 (1652)
Q Consensus 1164 DR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk-~EPdnalAL~smA~dYY~~~~ndesla~~~----- 1237 (1652)
++|...||+.+ +.+.++ ..|+......- +..|.. .++-+...+.
T Consensus 467 ------------------------~~g~~~eA~~l---f~~m~~~~~pd~~t~~~l--L~a~~~-~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 467 ------------------------LNNRCFEALIF---FRQMLLTLKPNSVTLIAA--LSACAR-IGALMCGKEIHAHVL 516 (857)
T ss_pred ------------------------HCCCHHHHHHH---HHHHHhCCCCCHhHHHHH--HHHHhh-hchHHHhHHHHHHHH
Confidence 23333333333 222211 12332222211 222322 2222221111
Q ss_pred --hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHH--hCCCCCch
Q 000330 1238 --NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALI--KWPKGVPG 1312 (1652)
Q Consensus 1238 --~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~--~~PkNa~g 1312 (1652)
....+..+.-.+|..|...++.+.|..+|+.. .|+-+.. .|..+|....+ .++|+.+|++... ..|+...
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T- 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVT- 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCccc-
Confidence 11111112223344444466777777777664 3333333 55556644443 6677777776665 3455544
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhcc---cccccchhhhcccCCCCCCCCCCCCCccc
Q 000330 1313 IQCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEF 1377 (1652)
Q Consensus 1313 ~~caW~QLIq~al~~en~d~ai~Lc~~ff~------------gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDf 1377 (1652)
++-+|...-+.|.++++.++...--. .+-..- .+.++|.+.+++- ++.++ ...
T Consensus 592 ----~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~pd------~~~ 659 (857)
T PLN03077 592 ----FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM--PITPD------PAV 659 (857)
T ss_pred ----HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC--CCCCC------HHH
Confidence 55556666666777776666655221 000000 0456666666532 11110 122
Q ss_pred ccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000330 1378 SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1449 (1652)
Q Consensus 1378 y~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1449 (1652)
| -++|+-| .. +|+.+.|..+.++.++..|++.-..++.=-.|. .....++|+++..
T Consensus 660 ~----------~aLl~ac-~~--~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya---~~g~~~~a~~vr~ 715 (857)
T PLN03077 660 W----------GALLNAC-RI--HRHVELGELAAQHIFELDPNSVGYYILLCNLYA---DAGKWDEVARVRK 715 (857)
T ss_pred H----------HHHHHHH-HH--cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH---HCCChHHHHHHHH
Confidence 3 1455533 33 899999999999999999976333333222332 2344777777666
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-05 Score=97.70 Aligned_cols=373 Identities=14% Similarity=0.099 Sum_probs=215.8
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1067 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1067 (1652)
++++.+..|..+++- |+|..|+.+|..++...+. ++.+|+.++.+|+..+..++|.++|+++|.++|+++.
T Consensus 413 ~~dL~~d~a~al~~~-----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 413 DVDLYLDLADALTNI-----GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred hHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 347788888877776 5689999999999887775 5789999999999999999999999999999999999
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC----cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc--
Q 000330 1068 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI-- 1140 (1652)
Q Consensus 1068 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D----r~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq-- 1140 (1652)
|+.+|..++ .-++|+++|+++. + +| ..++.-...-++.-++++|.+.|+.++-|.+-.-|..
T Consensus 488 ~Lasl~~~~g--------~~EkalEtL~~~~--~-~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 488 TLASLYQQLG--------NHEKALETLEQII--N-PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hHHHHHHhcC--------CHHHHHHHHhccc--C-CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999 8899999999876 2 44 2223334455678889999999999988875544431
Q ss_pred ----------------cccC---CCCcccchHHHHHHhhccCCcchh--hHHHH--H-HHHhhccc-hHH----------
Q 000330 1141 ----------------PATG---SNDRHSLFLSDILTCLTISDKLIF--WVCCV--Y-LVIYRKLP-DAV---------- 1185 (1652)
Q Consensus 1141 ----------------~Al~---g~sE~~lSLsKi~~YLt~sDR~~A--WL~~i--Y-llrYrvLP-Gd~---------- 1185 (1652)
++.. +-.. ++.-..++.-...+|.-.+ -++.- . -...+.|. .+|
T Consensus 557 ~~~~~~f~~~~k~r~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~ 635 (895)
T KOG2076|consen 557 LKKRYIFPRNKKKRRRAIAGTTSKRYS-ELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILS 635 (895)
T ss_pred HHHHHhcchHHHHHHHhhccccccccc-hhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 0000 0010 1111122222222221111 00000 0 00001110 111
Q ss_pred HhhhhhhhhhhccCCCC--cccchhhHHH--HHHHHHHHHHHHhhhcCCcchhhhh----------hhchhhHhHHH-HH
Q 000330 1186 LQLLECEKELFAIDWPP--VQLEDDEKQR--AIKLIEMAVNSVELYSNGESLEKET----------NLRSAHCFAVN-HI 1250 (1652)
Q Consensus 1186 y~q~e~~KEAf~I~W~y--~~vlk~EPdn--alAL~smA~dYY~~~~ndesla~~~----------~~kt~~~fKLN-~I 1250 (1652)
+...++..||+.|---- ..+.-.+++. -+.-+.++..+|.. +...+-+- +.++-+.+--| .+
T Consensus 636 L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~---d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~ 712 (895)
T KOG2076|consen 636 LAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYAR---DPGDAFSYLRSVITQFQFYLDVYQLNLWNLDF 712 (895)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 12223344443320000 0000001110 01111111112211 11110000 11222222223 23
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCc-hhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcC
Q 000330 1251 WCMAVLNGLECSMNLLEKYIKLYPSC-LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNG 1328 (1652)
Q Consensus 1251 R~lI~LEDse~A~~LfdklLk~~P~d-~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~e 1328 (1652)
..+....+-.+-..++.+++..+|.+ ..+ .+++-++.....-..|+..|-+|+..+|+++-.-.|+=..+|.++++.
T Consensus 713 s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr- 791 (895)
T KOG2076|consen 713 SYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQR- 791 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-
Confidence 33333445566777888888888888 455 777777666654567888999999999999997777766677777655
Q ss_pred ChHHHHHHHHH---HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000330 1329 RHDFAAELMDR---WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1405 (1652)
Q Consensus 1329 n~d~ai~Lc~~---ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1405 (1652)
.+.++ -++||+..+. +.+ +|.+ ..+|+ .|==||-+||+ -|-..
T Consensus 792 ------~v~~Rh~~i~qG~afL~R-Y~~----lR~~-------------------~~~QE--a~YNigRayh~--~gl~~ 837 (895)
T KOG2076|consen 792 ------RVSNRHAQIAQGFAFLKR-YKE----LRRC-------------------EEKQE--AFYNIGRAYHQ--IGLVH 837 (895)
T ss_pred ------HHhhhHHHHHHHHHHHHH-HHH----hhcc-------------------HHHHH--HHHHHHHHHHH--cccHH
Confidence 22333 3556665532 111 1100 01222 22346779999 99999
Q ss_pred HHHHHHHHHHhhcc
Q 000330 1406 EARLAIDAALKAAA 1419 (1652)
Q Consensus 1406 EAfaAYDKALkanp 1419 (1652)
=|..-|+|+|...|
T Consensus 838 LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 838 LAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-06 Score=96.41 Aligned_cols=257 Identities=15% Similarity=0.109 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHHhcCCCcccchh
Q 000330 1014 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1014 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYInsr~slddrl~ 1084 (1652)
-|+|.++|...++.+|...++...|..+|.++|+...+..+-+.-+ ..|+-.. |+.=|...+
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~aG-------- 121 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMAAG-------- 121 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHhh--------
Confidence 3999999999999999999999999999999998777766655443 3433221 788888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHH-----HHh
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI-----LTC 1159 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi-----~~Y 1159 (1652)
-||+|-++|..+..-- + .....+.+|+.+|.++.+++|||.+=.+|.. +.+..- .+-++-| +.+
T Consensus 122 l~DRAE~~f~~L~de~--e------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k--~~~q~~-~~eIAqfyCELAq~~ 190 (389)
T COG2956 122 LLDRAEDIFNQLVDEG--E------FAEGALQQLLNIYQATREWEKAIDVAERLVK--LGGQTY-RVEIAQFYCELAQQA 190 (389)
T ss_pred hhhHHHHHHHHHhcch--h------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--cCCccc-hhHHHHHHHHHHHHH
Confidence 8999999998886632 2 1278899999999999999999998888885 443221 1111111 112
Q ss_pred hccCCcchh--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcc
Q 000330 1160 LTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGES 1232 (1652)
Q Consensus 1160 Lt~sDR~~A--WL~~iY-----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndes 1232 (1652)
+..+|-..| ||...+ -+|=.+++|++++..|....|... +..++.-||+.+--+..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~---~e~v~eQn~~yl~evl~-------------- 253 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA---LERVLEQNPEYLSEVLE-------------- 253 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH---HHHHHHhChHHHHHHHH--------------
Confidence 222222222 555554 233456666666666666655555 44444444443333322
Q ss_pred hhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCch
Q 000330 1233 LEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG 1312 (1652)
Q Consensus 1233 la~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g 1312 (1652)
.+.-||..+++.+..++.+.++|+..+...-+.+++.+++.+++++.|...+-+-|...|.=.
T Consensus 254 ---------------~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-- 316 (389)
T COG2956 254 ---------------MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-- 316 (389)
T ss_pred ---------------HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH--
Confidence 235566667788888888888888888776666667777777778888888888888888643
Q ss_pred HHHHHHHHHHHHHHc
Q 000330 1313 IQCIWNQYVEYALQN 1327 (1652)
Q Consensus 1313 ~~caW~QLIq~al~~ 1327 (1652)
.+..|+++.+..
T Consensus 317 ---gf~rl~~~~l~d 328 (389)
T COG2956 317 ---GFHRLMDYHLAD 328 (389)
T ss_pred ---HHHHHHHhhhcc
Confidence 356667666543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-06 Score=109.00 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=170.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-CCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000330 1020 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH-NEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1094 (1652)
Q Consensus 1020 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel-nP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1094 (1652)
=|.|-+..+|+++.+|..|..++.+..+-+++++.+++|+.- |+.-.. +|--|+|.+..++.. +.-..++|
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e----esl~kVFe 1521 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE----ESLKKVFE 1521 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH----HHHHHHHH
Confidence 378889999999999999999999999999999999999853 443333 999999999655521 34455666
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000330 1095 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1174 (1652)
Q Consensus 1095 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1174 (1652)
++..-. |- .=+++.|..+|..++.++.|++.++.++. || ++.+..|+.+.-
T Consensus 1522 RAcqyc--d~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~K--------------KF------~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1522 RACQYC--DA-------YTVHLKLLGIYEKSEKNDEADELLRLMLK--------------KF------GQTRKVWIMYAD 1572 (1710)
T ss_pred HHHHhc--ch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHH--------------Hh------cchhhHHHHHHH
Confidence 655544 33 67999999999999999999997777663 12 356677876543
Q ss_pred HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH----HHH
Q 000330 1175 LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV----NHI 1250 (1652)
Q Consensus 1175 llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL----N~I 1250 (1652)
+++..+..++|-. ++. ++..++|- ..|
T Consensus 1573 ----------fLl~~ne~~aa~~------------------lL~---------------------rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1573 ----------FLLRQNEAEAARE------------------LLK---------------------RALKSLPKQEHVEFI 1603 (1710)
T ss_pred ----------HHhcccHHHHHHH------------------HHH---------------------HHHhhcchhhhHHHH
Confidence 2233222222222 222 23333333 235
Q ss_pred HHHHH----hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHh--CCCCCchHHHHHHHHHHH
Q 000330 1251 WCMAV----LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEY 1323 (1652)
Q Consensus 1251 R~lI~----LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~ 1323 (1652)
+.++. .+|.+.++.||.-+|..||.=.+||++...|+.+.+ ....+.+|++|+.+ -|+...-.-..| ++|
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw---Ley 1680 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW---LEY 1680 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH---HHH
Confidence 55544 459999999999999999999999999999999975 55777999999875 466666444455 666
Q ss_pred HHHc---CChHHHHHHHHHHHHhhh
Q 000330 1324 ALQN---GRHDFAAELMDRWFHSVW 1345 (1652)
Q Consensus 1324 al~~---en~d~ai~Lc~~ff~gia 1345 (1652)
+-.. ++.+.++.=+.+|..++.
T Consensus 1681 Ek~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred HHhcCchhhHHHHHHHHHHHHHHhh
Confidence 6654 455555555666776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=86.94 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=112.5
Q ss_pred hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC--C
Q 000330 987 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE--G 1064 (1652)
Q Consensus 987 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP--~ 1064 (1652)
+..|.+...|..+|..+...+ +++.|...|.++++.+|.+..+|+.++.+|...+...++..+|++|++..+ .
T Consensus 59 ~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQLG-----ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HhCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 345667788888888887764 569999999999999999999999999999999999999999999998642 2
Q ss_pred CHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1065 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1065 NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
... ++..|...+ .+++|+..|.+..... ++. .+.++.+..++...|++++|+..+.+...
T Consensus 134 ~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAG--------DFDKAEKYLTRALQID-PQR-------PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 667777777 8899999999988887 454 67899999999999999999998887775
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=94.80 Aligned_cols=122 Identities=9% Similarity=0.081 Sum_probs=103.1
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHH
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1089 (1652)
..+.++.+...|.++|+.+|+++++|+.++.+|...+....+.+.|++|++++|++-.++..|..--..-.++. .+++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~-~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH-MTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CcHHH
Confidence 45777999999999999999999999999999999999999999999999999999985554443210001111 36999
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1090 I~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
+.+|.+..+.. |+. .++++.+...+.+.|+|++|+..+.++..
T Consensus 130 ~~~l~~al~~d-P~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANE-------VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998 555 89999999999999999999999999876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-05 Score=94.28 Aligned_cols=250 Identities=14% Similarity=0.027 Sum_probs=157.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILW-ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaW-y~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1085 (1652)
.|+++.|...|.++.+.+|++..+. ...+.++...++.+.+.+.++++++.+|+|-+ +..+|+..+ .
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g--------d 202 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG--------A 202 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h
Confidence 3668999999999999999996443 44488999999999999999999999999986 888999998 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000330 1086 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1165 (1652)
Q Consensus 1086 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1165 (1652)
+++|+.+|..+.+...-+..+....-...++.++.......+-+...+.+..+-. ..+
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~----------------------~~~ 260 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR----------------------KTR 260 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH----------------------HHh
Confidence 9999999999887752221001100012333333333233333333332222211 001
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHh
Q 000330 1166 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF 1245 (1652)
Q Consensus 1166 ~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~f 1245 (1652)
....+... .+..+...|...+|.. ++..+.+ . ..+.
T Consensus 261 ~~~~~~~~--------~A~~l~~~g~~~~A~~------------------~L~~~l~---~---------------~~~~ 296 (398)
T PRK10747 261 HQVALQVA--------MAEHLIECDDHDTAQQ------------------IILDGLK---R---------------QYDE 296 (398)
T ss_pred CCHHHHHH--------HHHHHHHCCCHHHHHH------------------HHHHHHh---c---------------CCCH
Confidence 01111111 2223333344444433 3333211 0 0001
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000330 1246 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1324 (1652)
Q Consensus 1246 KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1324 (1652)
.+-.+.-.+..++.+.++..+++.++.+|.++++.+..+++..+. .-.+|+..|+.++...|++.. +.-|.+..
T Consensus 297 ~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-----~~~La~~~ 371 (398)
T PRK10747 297 RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-----YAWLADAL 371 (398)
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-----HHHHHHHH
Confidence 111111112346899999999999999999999965555554443 377999999999999999866 33477788
Q ss_pred HHcCChHHHHHHHHH
Q 000330 1325 LQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1325 l~~en~d~ai~Lc~~ 1339 (1652)
.+.|+.++|.++-++
T Consensus 372 ~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 372 DRLHKPEEAAAMRRD 386 (398)
T ss_pred HHcCCHHHHHHHHHH
Confidence 889999999777665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.2e-07 Score=108.78 Aligned_cols=216 Identities=17% Similarity=0.168 Sum_probs=164.5
Q ss_pred HHHHHHHH-HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH---HHHHHHhcCCCcccchhhHHHHH
Q 000330 1016 KALSLLSR-ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA---LWLMYINSRTPLNHRLDAYDAAL 1090 (1652)
Q Consensus 1016 AALdLLsr-ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~---LwlmYInsr~slddrl~~YdkAI 1090 (1652)
-+|.+|++ .++.+|++|+.|+.++.+|+-+++-+.+..+|++||+++|+ .|. ++-=++-.+ .||+|.
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e--------e~d~a~ 475 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE--------EFDKAM 475 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH--------HHHhHH
Confidence 34555554 35789999999999999999999888999999999999983 222 334455555 899999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000330 1091 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1170 (1652)
Q Consensus 1091 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1170 (1652)
..|-.+.... +.- --.|+=|--.|..+++++.|.-- ++.|++ .||. .. +=+
T Consensus 476 ~~fr~Al~~~-~rh-------YnAwYGlG~vy~Kqek~e~Ae~~----fqkA~~-INP~--------------ns--vi~ 526 (638)
T KOG1126|consen 476 KSFRKALGVD-PRH-------YNAWYGLGTVYLKQEKLEFAEFH----FQKAVE-INPS--------------NS--VIL 526 (638)
T ss_pred HHHHhhhcCC-chh-------hHHHHhhhhheeccchhhHHHHH----HHhhhc-CCcc--------------ch--hHH
Confidence 9997777776 454 66888999999999999999884 443433 4661 22 334
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000330 1171 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1250 (1652)
Q Consensus 1171 ~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1250 (1652)
|| .|.++.+.+..++|+.+ +.++...||.+.+..|.+|
T Consensus 527 ~~---------~g~~~~~~k~~d~AL~~---~~~A~~ld~kn~l~~~~~~------------------------------ 564 (638)
T KOG1126|consen 527 CH---------IGRIQHQLKRKDKALQL---YEKAIHLDPKNPLCKYHRA------------------------------ 564 (638)
T ss_pred hh---------hhHHHHHhhhhhHHHHH---HHHHHhcCCCCchhHHHHH------------------------------
Confidence 44 35567777888888888 7777777777777777653
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000330 1251 WCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVP 1311 (1652)
Q Consensus 1251 R~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~ 1311 (1652)
+.+..+++-++|+..++.+-+..|++.-+ .|.+ .|-++. +...|+.-|--|+..+|+-..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~-~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG-NTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-cchHHHHhhHHHhcCCCccch
Confidence 45556779999999999999999999999 4433 343444 488999999999999999887
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-05 Score=88.15 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1069 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1069 (1652)
.+-|.+|+.||.+. ++.+|..-|..||++||++.-+|..++.+|...|..+.++++|++|+.++|+|=. .+
T Consensus 36 ~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 77899999999995 4699999999999999999999999999999999999999999999999999877 33
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000330 1070 LMYINSRTPLNHRLDAYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1148 (1652)
Q Consensus 1070 lmYInsr~slddrl~~YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE 1148 (1652)
++.=.++ .|+.|...|+++...- =+.. -|.|.-+.-|-.+.|..++|-..+.|-+. ++-..+
T Consensus 111 ~FLC~qg--------~~~eA~q~F~~Al~~P~Y~~~-------s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~ 173 (250)
T COG3063 111 AFLCAQG--------RPEEAMQQFERALADPAYGEP-------SDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFP 173 (250)
T ss_pred HHHHhCC--------ChHHHHHHHHHHHhCCCCCCc-------chhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCC
Confidence 3333344 5899999998876641 1233 78899999999999999999997766654 332232
Q ss_pred ccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000330 1149 HSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1228 (1652)
Q Consensus 1149 ~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ 1228 (1652)
...++..+.+...+|. -.|...+ +-|.+ +
T Consensus 174 -~~~l~~a~~~~~~~~y---------------------------------------------~~Ar~~~----~~~~~-~ 202 (250)
T COG3063 174 -PALLELARLHYKAGDY---------------------------------------------APARLYL----ERYQQ-R 202 (250)
T ss_pred -hHHHHHHHHHHhcccc---------------------------------------------hHHHHHH----HHHHh-c
Confidence 2223333333322222 1122222 22332 2
Q ss_pred CCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH
Q 000330 1229 NGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 1279 (1652)
Q Consensus 1229 ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL 1279 (1652)
+ .-.+..++|- ||+-..+||...+-..=.++.+..|...++
T Consensus 203 ~---------~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 203 G---------GAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred c---------cccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 2 1333556665 777666899999999999999999999887
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00028 Score=87.37 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1071 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1071 (1652)
.+||.+....+.|.. ...-...|.+||..-|= -.-+|-.|+.+-...+-++-...-|++=++++|....=..-
T Consensus 103 RIwl~Ylq~l~~Q~~-----iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-----ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcch-----HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 789999988888864 34555666666666664 34577777777766666666667777777777766554444
Q ss_pred HHhcCCCcccchhhHHHH-----------------HHHHHHhhhcCCCCcch--------------hhhhhHHHHHHHHH
Q 000330 1072 YINSRTPLNHRLDAYDAA-----------------LSVLCRCASASDGDEMH--------------ASACILDLFLQMLQ 1120 (1652)
Q Consensus 1072 YInsr~slddrl~~YdkA-----------------I~aLe~las~~~~Dr~~--------------~Sa~iLDILL~Lvq 1120 (1652)
|+.....+++....|..- -..||++.+++ |++.+ -+-++.=+|..|++
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 444442222222122111 12234445554 33211 12245667888999
Q ss_pred HHHHhcCHHHHHHHHH
Q 000330 1121 CFCMSGNTEKAIQRIS 1136 (1652)
Q Consensus 1121 LY~qSGnydKAI~ti~ 1136 (1652)
-|..+|.++||..++.
T Consensus 257 YYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYE 272 (835)
T ss_pred HHHHhhhhHHHHHHHH
Confidence 9999999999998553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.4e-05 Score=92.99 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1087 (1652)
++|.+.|.+.+..|+-+|.-.+-.-..+.....++...++.++...|+..++.++. ++++|-..+ .|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--------~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--------KYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--------hHH
Confidence 56899999999999999999999999999989999999999999999999999998 556677777 899
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
+||..|-++..-. +|+ +.||--+.-|-.|-|+|+-...+-+++++
T Consensus 93 eaiKcy~nAl~~~-~dN-------~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDN-------LQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999998887776 888 99999999999999999999999999997
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=91.15 Aligned_cols=259 Identities=17% Similarity=0.134 Sum_probs=177.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000330 1052 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1131 (1652)
Q Consensus 1052 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1131 (1652)
++--..|-++. ..|.-.+.|+=++ .=|+|+..|-+++... +.- .|.-|.|-.||..-|.+|.|
T Consensus 26 q~~~~qa~~ls-r~Yv~GlNfLLs~--------Q~dKAvdlF~e~l~~d-~~t-------~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 26 QDKQDQANRLS-RDYVKGLNFLLSN--------QPDKAVDLFLEMLQED-PET-------FEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred hhHHHHHhhcc-HHHHhHHHHHhhc--------CcchHHHHHHHHHhcC-chh-------hHHHHHHHHHHHhcchHHHH
Confidence 34445554454 7888676666665 4599999999998876 555 89999999999999999999
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000330 1132 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1211 (1652)
Q Consensus 1132 I~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPd 1211 (1652)
|. |-|+-.+ +| +++ .. +
T Consensus 89 IR----iHQ~L~~--sp-dlT---------~~-----------------------------------------------q 105 (389)
T COG2956 89 IR----IHQTLLE--SP-DLT---------FE-----------------------------------------------Q 105 (389)
T ss_pred HH----HHHHHhc--CC-CCc---------hH-----------------------------------------------H
Confidence 99 4443333 44 222 11 2
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhh-h-hchhhHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhH------
Q 000330 1212 RAIKLIEMAVNSVELYSNGESLEKET-N-LRSAHCFAVNHIWCMAV----LNGLECSMNLLEKYIKLYPSCLEL------ 1279 (1652)
Q Consensus 1212 nalAL~smA~dYY~~~~ndesla~~~-~-~kt~~~fKLN~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL------ 1279 (1652)
.++|+.++|-||..+..- +-++.. . .--..+|..+-+|+++. -.++++|++...++++.-|+.-.+
T Consensus 106 r~lAl~qL~~Dym~aGl~--DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 106 RLLALQQLGRDYMAAGLL--DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHhhhh--hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 233334444444432111 001111 0 11124566665666643 339999999999999999887555
Q ss_pred -HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhh
Q 000330 1280 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1358 (1652)
Q Consensus 1280 -~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaL 1358 (1652)
.|.-+++...+ .+.|+..+.+|+..+|+.+. +=+++-..++.+|++..|++..+. ++
T Consensus 184 CELAq~~~~~~~-~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~AV~~~e~-----------------v~ 241 (389)
T COG2956 184 CELAQQALASSD-VDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQKAVEALER-----------------VL 241 (389)
T ss_pred HHHHHHHhhhhh-HHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHHHHHHHHH-----------------HH
Confidence 34445555554 77899999999999999999 888999999999999999887755 11
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000330 1359 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1438 (1652)
Q Consensus 1359 rkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1438 (1652)
+-|+++++++. ..|-.||++ .|+.+|...+.-+|...+++-..+.++ |=+.+..+|
T Consensus 242 ---------eQn~~yl~evl-----------~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g~~~~l~l--~~lie~~~G 297 (389)
T COG2956 242 ---------EQNPEYLSEVL-----------EMLYECYAQ--LGKPAEGLNFLRRAMETNTGADAELML--ADLIELQEG 297 (389)
T ss_pred ---------HhChHHHHHHH-----------HHHHHHHHH--hCCHHHHHHHHHHHHHccCCccHHHHH--HHHHHHhhC
Confidence 22444555555 677789999 999999999999999999987444444 444455555
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=97.31 Aligned_cols=291 Identities=15% Similarity=0.095 Sum_probs=214.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1091 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1091 (1652)
-+..+|+.+|.+.-++.++..=+...++..|..+..-.++...|+.+=+..|.--.=--+|--.-|++.+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 3469999999998899999997777889999999988889999999988886433322445555566666 44899
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000330 1092 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1171 (1652)
Q Consensus 1092 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1171 (1652)
+|++-.-..+++. -+.|-++-.||-.+++++.||..+.|-.| .+|+ .+
T Consensus 408 ~Laq~Li~~~~~s-------PesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~--------------------fa 455 (638)
T KOG1126|consen 408 YLAQDLIDTDPNS-------PESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPR--------------------FA 455 (638)
T ss_pred HHHHHHHhhCCCC-------cHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCc--------------------cc
Confidence 9988766666787 89999999999999999999996655554 3442 22
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000330 1172 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1251 (1652)
Q Consensus 1172 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1251 (1652)
|.| +|.|.=+-.++.-..|-.. |...+.-+|..=-|.+-+++-|++
T Consensus 456 Yay-----TLlGhE~~~~ee~d~a~~~---fr~Al~~~~rhYnAwYGlG~vy~K-------------------------- 501 (638)
T KOG1126|consen 456 YAY-----TLLGHESIATEEFDKAMKS---FRKALGVDPRHYNAWYGLGTVYLK-------------------------- 501 (638)
T ss_pred hhh-----hhcCChhhhhHHHHhHHHH---HHhhhcCCchhhHHHHhhhhheec--------------------------
Confidence 333 2333333444444445455 555666666666666555433333
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHH-HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000330 1252 CMAVLNGLECSMNLLEKYIKLYPSCLELVLM-KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1330 (1652)
Q Consensus 1252 ~lI~LEDse~A~~LfdklLk~~P~d~eL~L~-AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1330 (1652)
.|..+.|.--|.++++.+|.+..|+.+ +.-++..+-.++|+..|++|+.++|+|+- .+++-+......+++
T Consensus 502 ----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 502 ----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRASILFSLGRY 573 (638)
T ss_pred ----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHHHHHHhhcch
Confidence 345667777899999999999999444 44344444499999999999999999999 777888888888899
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000330 1331 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1410 (1652)
Q Consensus 1331 d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1410 (1652)
++|...+++ |.++ .| |.=.+|.+||.++=+ .|+.+.|..-
T Consensus 574 ~eal~~LEe---------------Lk~~----vP-------------------~es~v~~llgki~k~--~~~~~~Al~~ 613 (638)
T KOG1126|consen 574 VEALQELEE---------------LKEL----VP-------------------QESSVFALLGKIYKR--LGNTDLALLH 613 (638)
T ss_pred HHHHHHHHH---------------HHHh----Cc-------------------chHHHHHHHHHHHHH--HccchHHHHh
Confidence 888888754 2222 11 222467999999999 9999999999
Q ss_pred HHHHHhhccCC
Q 000330 1411 IDAALKAAASE 1421 (1652)
Q Consensus 1411 YDKALkanp~N 1421 (1652)
|==|+..+|..
T Consensus 614 f~~A~~ldpkg 624 (638)
T KOG1126|consen 614 FSWALDLDPKG 624 (638)
T ss_pred hHHHhcCCCcc
Confidence 99999999954
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8e-06 Score=95.00 Aligned_cols=308 Identities=17% Similarity=0.192 Sum_probs=204.0
Q ss_pred hhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000330 986 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 986 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
+|-.|...++...-|-.||.-..+ .+|+.=|.+.|+.-|+=..+-..-+.+..++|+-+.+.+-|.+-++++|.+
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGks-----k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKS-----KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCC-----ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 444566668888888888887665 889999999999999999999999999999999999999999999999966
Q ss_pred HH-------------HHH------HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhc
Q 000330 1066 YA-------------LWL------MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSG 1126 (1652)
Q Consensus 1066 Y~-------------Lwl------mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSG 1126 (1652)
-. -|. -|+..+ .|..||.++-.+.+-.+ |--.+..++.++|..-|
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~~--------Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQP--------WDASLRQARAKCYIAEG 203 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcCc--------chhHHHHHHHHHHHhcC
Confidence 54 111 122233 67888888877766553 33678889999999999
Q ss_pred CHHHHHHHHHh---hcccc------------cCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000330 1127 NTEKAIQRISR---LLIPA------------TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1191 (1652)
Q Consensus 1127 nydKAI~ti~r---LEq~A------------l~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1191 (1652)
...+||.-+.. |-+.. .-|+ ...||..|+.||..... -++|+-|.-..+++ .-+.+-
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd--~~~sL~~iRECLKldpd--HK~Cf~~YKklkKv----~K~les 275 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD--AENSLKEIRECLKLDPD--HKLCFPFYKKLKKV----VKSLES 275 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh--HHHHHHHHHHHHccCcc--hhhHHHHHHHHHHH----HHHHHH
Confidence 99999984422 22111 1222 24578888888888777 56676652222221 111111
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----HHHHHHhcCHHHHHHHHH
Q 000330 1192 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH----IWCMAVLNGLECSMNLLE 1267 (1652)
Q Consensus 1192 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----IR~lI~LEDse~A~~Lfd 1267 (1652)
-+++.. +.+-.-.+ + +|+.-+..+ -......+|. -+|+-.-|.+-+|+.-|.
T Consensus 276 ~e~~ie-----------~~~~t~cl-e---------~ge~vlk~e---p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 276 AEQAIE-----------EKHWTECL-E---------AGEKVLKNE---PEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHh-----------hhhHHHHH-H---------HHHHHHhcC---CcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 111111 00000000 1 111111110 0111111222 234333558899999999
Q ss_pred HHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-----H
Q 000330 1268 KYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----W 1340 (1652)
Q Consensus 1268 klLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~-----f 1340 (1652)
.+|...|+|+++ -=+-+||-.- |-++|+.-|+.|++.+|+|.. + .++.+.|.+|-++ |
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A~e~n~sn~~----~----------reGle~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKALELNESNTR----A----------REGLERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhcCcccHH----H----------HHHHHHHHHHHHHhccchH
Confidence 999999999999 5566676444 688999999999999999998 5 3467778877766 7
Q ss_pred HHhhhhccc-ccccchhhhccc
Q 000330 1341 FHSVWKVQY-SQVEISDPLVAD 1361 (1652)
Q Consensus 1341 f~gia~~Q~-~~deALDaLrkg 1361 (1652)
|+-+.--.. .+.+...++|+.
T Consensus 397 YKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 397 YKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHHhhhcccccHHHHHHHHHHH
Confidence 776655444 777888888765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-06 Score=81.54 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=94.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000330 1019 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1094 (1652)
Q Consensus 1019 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1094 (1652)
.+|.++++.+|++..+.+.++..|...+...++.++|+++++.+|.+.. ++..|...+ .|+.|+.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999998866 667777777 8999999999
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1095 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1095 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
+..... ++. .++++.+..+|...|++++|+..+.+...
T Consensus 76 ~~~~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 76 LAAALD-PDD-------PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHhcC-CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877 555 89999999999999999999998887776
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0001 Score=92.46 Aligned_cols=343 Identities=16% Similarity=0.102 Sum_probs=200.1
Q ss_pred ccccccccchhh----hhhhhhcc----ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 000330 971 RQSSFFRSRNGV----LNKLKQVE----LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLL 1040 (1652)
Q Consensus 971 ~~~rYF~~~~d~----i~~le~~~----~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~ 1040 (1652)
+...||....+. ..++|+.. -..+.|=.+|+-+..-..+ -+|.++++.++..- |.+..++.+-+.
T Consensus 327 d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~-----s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 327 DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD-----SKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc-----hHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445555555554 33677764 3349999999988877765 89999999999999 888888888877
Q ss_pred HHHhC-CCCchHHHHHHHHHhh--------CCCCHH-HHHHHHh---cCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000330 1041 IFYSN-TNSVGKDDMFSYSVKH--------NEGSYA-LWLMYIN---SRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1107 (1652)
Q Consensus 1041 lY~~~-~~~eea~emlekAVel--------nP~NY~-LwlmYIn---sr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1107 (1652)
+++.. +..+++.+|-.||+.+ .|..|- ++..|-. +....+.|+.--.++++.|++.+...+.|
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d---- 477 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD---- 477 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 77754 4466788888888873 333333 3333322 23355566656688889998887776444
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc-CCCCc---------------------------------ccchH
Q 000330 1108 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT-GSNDR---------------------------------HSLFL 1153 (1652)
Q Consensus 1108 Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al-~g~sE---------------------------------~~lSL 1153 (1652)
.++++++.--|..+++++.|.+...+.+. + .|.+. +.+--
T Consensus 478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~--l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 478 ----PLVIFYLALQYAEQRQLTSALDYAREALA--LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 56677777777777777777766655554 2 11111 12222
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHh-hccchHH-Hhhhh---hhhhhhccCCCCcccchhhHHHHHHHH-----------
Q 000330 1154 SDILTCLTISDKLIFWVCCVYLVIY-RKLPDAV-LQLLE---CEKELFAIDWPPVQLEDDEKQRAIKLI----------- 1217 (1652)
Q Consensus 1154 sKi~~YLt~sDR~~AWL~~iYllrY-rvLPGd~-y~q~e---~~KEAf~I~W~y~~vlk~EPdnalAL~----------- 1217 (1652)
-|+.+=++.+|+|-+=--|+|.+.+ +..++-- -...| +.|.-+.+ ...-.++-+..-..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l---a~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL---ALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc---CcccccccchhhHHHHHHHHhhhhhcc
Confidence 2344445556666665555663332 2111100 00011 01111111 0000111111111111
Q ss_pred -------------------------HHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----H--HHHHHhcCHHHHHHHH
Q 000330 1218 -------------------------EMAVNSVELYSNGESLEKETNLRSAHCFAVNH----I--WCMAVLNGLECSMNLL 1266 (1652)
Q Consensus 1218 -------------------------smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----I--R~lI~LEDse~A~~Lf 1266 (1652)
.+|++++..+-+++..-.- =.++..-.++.+ + +.+...+..++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C-L~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC-LLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 2334444442232221000 001112223322 2 2223356899999999
Q ss_pred HHHHHhCCCchhH--HHHHHHHhhcccCCccH--HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Q 000330 1267 EKYIKLYPSCLEL--VLMKARLQKHDFGDLSS--VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1337 (1652)
Q Consensus 1267 dklLk~~P~d~eL--~L~AAyL~~K~m~~~A~--svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc 1337 (1652)
..++...|.++.. .|...+++... +.-+. .++..|+.++|.|.. +|++|.......|+.++|..-.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~e----aW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHE----AWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccchHHHHHHH
Confidence 9999999999999 44444444443 44333 599999999999999 9999999999999999776533
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.7e-06 Score=88.94 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=94.1
Q ss_pred hhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCC--CchHHHHHHHHHh
Q 000330 984 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI-FYSNTN--SVGKDDMFSYSVK 1060 (1652)
Q Consensus 984 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~l-Y~~~~~--~eea~emlekAVe 1060 (1652)
..|+..|.+.+.|+.++.-++..+ +++.|+..|.+|++++|+++.+|+.|+.. |...+. ..++.++|++|++
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~g-----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWRN-----DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 467778999999999999998775 46999999999999999999999999985 566665 4789999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000330 1061 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1061 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1103 (1652)
.+|++-. |+..|...+ .|++|+..|+++....+++
T Consensus 139 ~dP~~~~al~~LA~~~~~~g--------~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQA--------DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCC
Confidence 9999877 788888888 9999999999998887555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.7e-06 Score=83.69 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000330 1019 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1094 (1652)
Q Consensus 1019 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1094 (1652)
.+|.+||+++|++ |+.++..+.+.+.-.++.++|.+|+.++|.++. ++.++...+ .|++|+..|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFYG 82 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHHH
Confidence 5678888888775 556677777777777788888888888887777 555666666 7788888888
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1095 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1095 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
+..+..| +. -+.++.+..++...|+++.||..+.+...
T Consensus 83 ~Al~l~p-~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 83 HALMLDA-SH-------PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHhcCC-CC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8777763 43 67888888888888888888887766654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-05 Score=83.41 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=108.8
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1066 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1066 (1652)
+...+.++.+|..++..+ +++.|...|.++++.+|+++ .+|+.++.+|...++..++.+.|+++++..|++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG-----DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 444588999999888764 46999999999999999987 6889999999999999999999999999999766
Q ss_pred H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh--h--------hHHHHHHHHHHHHHhcCHH
Q 000330 1067 A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA--C--------ILDLFLQMLQCFCMSGNTE 1129 (1652)
Q Consensus 1067 ~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa--~--------iLDILL~LvqLY~qSGnyd 1129 (1652)
. ++..|.+.........-.+++|++.|.+....+ |+....-. . +....+.+..+|...|+++
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 4 344454441111112236899999999999988 44311100 0 1112346788999999999
Q ss_pred HHHHHHHhhcc
Q 000330 1130 KAIQRISRLLI 1140 (1652)
Q Consensus 1130 KAI~ti~rLEq 1140 (1652)
+|+..+.++..
T Consensus 184 ~A~~~~~~al~ 194 (235)
T TIGR03302 184 AAINRFETVVE 194 (235)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.7e-05 Score=96.09 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=159.5
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000330 1060 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1135 (1652)
Q Consensus 1060 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1135 (1652)
-++|.|+. |..+|...+ .|++|+.+++.+.+.+ |+. +.+++++.-||.+.+++++|.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~--------~~deai~i~~~~l~~~-P~~-------i~~yy~~G~l~~q~~~~~~~~lv- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSEN--------LTDEAKDICEEHLKEH-KKS-------ISALYISGILSLSRRPLNDSNLL- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhC-Ccc-------eehHHHHHHHHHhhcchhhhhhh-
Confidence 45666666 556676777 8899999998888888 677 88888888899999999998885
Q ss_pred HhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHH----H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhh
Q 000330 1136 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCV----Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE 1209 (1652)
Q Consensus 1136 ~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~i----Y--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~E 1209 (1652)
++.. +-..+.+. .+.. ++|.. + .-.++. +|..|...|..++++.+ |.++++-+
T Consensus 88 -~~l~--~~~~~~~~----~~ve----------~~~~~i~~~~~~k~Al~~-LA~~Ydk~g~~~ka~~~---yer~L~~D 146 (906)
T PRK14720 88 -NLID--SFSQNLKW----AIVE----------HICDKILLYGENKLALRT-LAEAYAKLNENKKLKGV---WERLVKAD 146 (906)
T ss_pred -hhhh--hcccccch----hHHH----------HHHHHHHhhhhhhHHHHH-HHHHHHHcCChHHHHHH---HHHHHhcC
Confidence 4443 11111100 1111 22211 1 112333 68889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 000330 1210 KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKH 1289 (1652)
Q Consensus 1210 PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K 1289 (1652)
|+|+.+|=.+| .+|+. . +.++|+.++.++++. |+..+
T Consensus 147 ~~n~~aLNn~A-Y~~ae-----------------------------~-dL~KA~~m~~KAV~~------------~i~~k 183 (906)
T PRK14720 147 RDNPEIVKKLA-TSYEE-----------------------------E-DKEKAITYLKKAIYR------------FIKKK 183 (906)
T ss_pred cccHHHHHHHH-HHHHH-----------------------------h-hHHHHHHHHHHHHHH------------HHhhh
Confidence 99999998875 34432 0 345555555555554 44444
Q ss_pred ccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCC
Q 000330 1290 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1369 (1652)
Q Consensus 1290 ~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es 1369 (1652)
+ ..+...+|++.+..+|++.. .+.++++.....-....+..++.+-|..+.. ....++++++|+.....-+
T Consensus 184 q-~~~~~e~W~k~~~~~~~d~d----~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~--- 254 (906)
T PRK14720 184 Q-YVGIEEIWSKLVHYNSDDFD----FFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDN--- 254 (906)
T ss_pred c-chHHHHHHHHHHhcCcccch----HHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCC---
Confidence 3 44555666666666666666 5555555555544445555554442222111 0144555666655433311
Q ss_pred CCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc----CCcHHHHHHHHHHHHhcC
Q 000330 1370 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVREHAMLLLIN 1437 (1652)
Q Consensus 1370 ~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp----~N~~i~cLNNYAYFLS~e 1437 (1652)
.+++ +.-+++.+. .+++.. ..-|+.+|+... ...|..|+.+|--++++.
T Consensus 255 -----~n~~-----------a~~~l~~~y--~~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~ 307 (906)
T PRK14720 255 -----KNNK-----------AREELIRFY--KEKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFD 307 (906)
T ss_pred -----cchh-----------hHHHHHHHH--HHHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHeeec
Confidence 2334 444554444 444444 555666665433 123566777666666553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.5e-05 Score=81.86 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhC--------CCCchHHHHHHHHHhhC
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI---LWITYLLIFYSN--------TNSVGKDDMFSYSVKHN 1062 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSae---aWy~yl~lY~~~--------~~~eea~emlekAVeln 1062 (1652)
+.|+.+|.-++.. ++++.|+..|.++++.+|+++. +|+.++.+|+.. +....+.+.|+++++..
T Consensus 71 ~a~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKS-----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 6788888877776 4579999999999999998887 688888888875 45667899999999999
Q ss_pred CCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000330 1063 EGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1121 (1652)
Q Consensus 1063 P~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqL 1121 (1652)
|++-. ++.+|++.+ .|.+|+..|.+....+ |+ +....+.++.+..+
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~-p~----~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENY-PD----TPATEEALARLVEA 212 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHC-CC----CcchHHHHHHHHHH
Confidence 99843 345667777 8999999999998887 33 12347899999999
Q ss_pred HHHhcCHHHHHHHHHhhc
Q 000330 1122 FCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1122 Y~qSGnydKAI~ti~rLE 1139 (1652)
|...|++++|+..+..|.
T Consensus 213 ~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999777765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=71.27 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCC
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNE 1063 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP 1063 (1652)
+.+.|..+|..++.. ++|+.|+..|.+||++||+++.+|+.++.+|..++ ...++..+|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-----GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 457899999988887 56799999999999999999999999999999999 68899999999999998
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0003 Score=90.12 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1069 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1069 (1652)
..|+..-.-|++ .++.-.|..-|++||.++|.+-.+|.-+...|...|..+.+...|-||..++|.+.. .+
T Consensus 563 ~nW~~rG~yyLe-----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 563 ENWVQRGPYYLE-----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hhhhhccccccC-----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence 556663333333 355689999999999999999999999999999999999999999999999998766 34
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh--hHHHHHHHHHHHHHhcCHHHHHH
Q 000330 1070 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC--ILDLFLQMLQCFCMSGNTEKAIQ 1133 (1652)
Q Consensus 1070 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~--iLDILL~LvqLY~qSGnydKAI~ 1133 (1652)
-|--..+ .|.+|+.+|....... .+ +++++ +-+.++.+...+..+|=+.||..
T Consensus 638 ~~ecd~G--------kYkeald~l~~ii~~~-s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 638 VMECDNG--------KYKEALDALGLIIYAF-SL--ERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHHH-HH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4433444 8999999997766554 22 35554 36788888888888888777776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=83.90 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHhhCCCCHHHHH----HHHhcCCCcccchhhH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAY 1086 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~-eea~emlekAVelnP~NY~Lwl----mYInsr~slddrl~~Y 1086 (1652)
+.++.|+.++..+|++||.+..+|.....++...+.. +++.+.+.+|++.+|.||.+|. ++.+.+ . ..+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~----~--~~~ 124 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG----P--DAA 124 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC----c--hhh
Confidence 3458999999999999999999999999998888743 6789999999999999999875 333332 1 135
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1087 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1087 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
++++.++..+.+.+ +.. -.+|..+.-++...|+|++||+..+++..
T Consensus 125 ~~el~~~~kal~~d-pkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 125 NKELEFTRKILSLD-AKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 78899999999888 555 88999999999999999999998888875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0032 Score=75.20 Aligned_cols=312 Identities=15% Similarity=0.076 Sum_probs=220.5
Q ss_pred hccccHHHHHH-----HHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000330 988 QVELSNEQCVE-----MALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1060 (1652)
Q Consensus 988 ~~~~d~qlWLe-----lAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVe 1060 (1652)
..|.....|.. -|.+.++..- -.-|+|.+|--++.++=+.-+.-..++..=+..=-++++...++.++.+|.+
T Consensus 67 ~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae 146 (400)
T COG3071 67 RTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE 146 (400)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 33455566665 3555555543 2458899999999998888888777777777777788888889999999999
Q ss_pred hCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000330 1061 HNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1135 (1652)
Q Consensus 1061 lnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1135 (1652)
..++.-. ....-++++ .|+.|+.-+.++.+.. |-. .+++..++++|..+|+++..+..+
T Consensus 147 ~~~~~~l~v~ltrarlll~~~--------d~~aA~~~v~~ll~~~-pr~-------~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 147 LAGDDTLAVELTRARLLLNRR--------DYPAARENVDQLLEMT-PRH-------PEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred cCCCchHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHhccHHHHHHHH
Confidence 9765554 556777888 8899999999888888 444 799999999999999999999988
Q ss_pred HhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000330 1136 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1215 (1652)
Q Consensus 1136 ~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalA 1215 (1652)
..|....+-+++| +..+... .|..+ +++.... .-+..
T Consensus 211 ~~L~ka~~l~~~e-------~~~le~~--------------a~~gl----L~q~~~~------------------~~~~g 247 (400)
T COG3071 211 PKLRKAGLLSDEE-------AARLEQQ--------------AWEGL----LQQARDD------------------NGSEG 247 (400)
T ss_pred HHHHHccCCChHH-------HHHHHHH--------------HHHHH----HHHHhcc------------------ccchH
Confidence 7777533322222 1111110 11111 1111000 00000
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCcc
Q 000330 1216 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLS 1295 (1652)
Q Consensus 1216 L~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A 1295 (1652)
| .+..+. +.. ..|.+....+.++..+|.+++.+.|..+....++..-+.- |.....++.-.+ +.+=
T Consensus 248 L----~~~W~~------~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d-~~~l 313 (400)
T COG3071 248 L----KTWWKN------QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGD-PEPL 313 (400)
T ss_pred H----HHHHHh------ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCC-chHH
Confidence 1 011111 000 2466677777888888999999999999999999887766 655555666665 7777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCc
Q 000330 1296 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1375 (1652)
Q Consensus 1296 ~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vS 1375 (1652)
+...++.+...|+++. +|.-|-+.++.++.|.+|..-.+. ++....+ .+
T Consensus 314 ~k~~e~~l~~h~~~p~----L~~tLG~L~~k~~~w~kA~~~lea-----------------Al~~~~s----------~~ 362 (400)
T COG3071 314 IKAAEKWLKQHPEDPL----LLSTLGRLALKNKLWGKASEALEA-----------------ALKLRPS----------AS 362 (400)
T ss_pred HHHHHHHHHhCCCChh----HHHHHHHHHHHhhHHHHHHHHHHH-----------------HHhcCCC----------hh
Confidence 8999999999999995 999999999999999999887743 2222211 13
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000330 1376 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1417 (1652)
Q Consensus 1376 Dfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1417 (1652)
| | .++++.+-+ .|...+|...++.+|-.
T Consensus 363 ~-~-----------~~la~~~~~--~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 363 D-Y-----------AELADALDQ--LGEPEEAEQVRREALLL 390 (400)
T ss_pred h-H-----------HHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 3 4 889999999 99999999999999943
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0048 Score=70.47 Aligned_cols=321 Identities=12% Similarity=-0.055 Sum_probs=187.6
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADP---TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1066 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINP---tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1066 (1652)
|.....|.-+|..+..... .+.|...+.++++.+| +..+.++..+.++...+..+++.++++++++.+|++.
T Consensus 3 p~~~~a~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 3 PDFALGHAAAALLLLLGGE-----RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CccHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 4555677777766665543 3444556666666666 5577888888888889988999999999999999998
Q ss_pred HHHH---HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000330 1067 ALWL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1143 (1652)
Q Consensus 1067 ~Lwl---mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al 1143 (1652)
..+. .|..... +.+ ..+.+..++......+ ++. ...+..+..++...|+++.|+..+.+...
T Consensus 78 ~a~~~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~-~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 142 (355)
T cd05804 78 LALKLHLGAFGLGD-FSG---MRDHVARVLPLWAPEN-PDY-------WYLLGMLAFGLEEAGQYDRAEEAARRALE--- 142 (355)
T ss_pred HHHHHhHHHHHhcc-ccc---CchhHHHHHhccCcCC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 7554 3433332 123 3355555554433333 443 56677788899999999999998877775
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHH
Q 000330 1144 GSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNS 1223 (1652)
Q Consensus 1144 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dY 1223 (1652)
..|. + .| ...+++.+|...|..+++... +.+.++..|......
T Consensus 143 --~~p~--------------~---~~--------~~~~la~i~~~~g~~~eA~~~---l~~~l~~~~~~~~~~------- 185 (355)
T cd05804 143 --LNPD--------------D---AW--------AVHAVAHVLEMQGRFKEGIAF---MESWRDTWDCSSMLR------- 185 (355)
T ss_pred --hCCC--------------C---cH--------HHHHHHHHHHHcCCHHHHHHH---HHhhhhccCCCcchh-------
Confidence 2331 1 11 123356667777777777665 444444333210000
Q ss_pred HhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HH-----HHHHHhhcccCCccHH
Q 000330 1224 VELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VL-----MKARLQKHDFGDLSSV 1297 (1652)
Q Consensus 1224 Y~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L-----~AAyL~~K~m~~~A~s 1297 (1652)
...=..+.+++...++.+.|+.+|++++...|....+ .+ ...++...+ ......
T Consensus 186 -------------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~ 245 (355)
T cd05804 186 -------------------GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGD 245 (355)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHH
Confidence 0001122455566889999999999998777743333 22 222233332 233334
Q ss_pred HHHHHHHhCCCC-C-chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCc
Q 000330 1298 GFEEALIKWPKG-V-PGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1375 (1652)
Q Consensus 1298 vle~AL~~~PkN-a-~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vS 1375 (1652)
-|+.+....+.. . +.+...+.-.+...+..++.+.|..+..+--. .+.-. .... ....
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~-~~~~~-------~~~~--~~~~---------- 305 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG-RASSA-------DDNK--QPAR---------- 305 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcc-------Cchh--hhHH----------
Confidence 454444332111 0 33333444567778888899999888866111 00000 0000 0000
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000330 1376 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1418 (1652)
Q Consensus 1376 Dfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1418 (1652)
.+ .+-.+...++|. +|+..+|......||...
T Consensus 306 --------~~-~~~~l~A~~~~~--~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 306 --------DV-GLPLAEALYAFA--EGNYATALELLGPVRDDL 337 (355)
T ss_pred --------hh-hHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 00 011445556667 999999999999999765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00047 Score=85.67 Aligned_cols=304 Identities=18% Similarity=0.203 Sum_probs=200.7
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1084 (1652)
++.|+-+.|++.-.++|.+|+.+..+|..|+.+|..-++-.++..+|..|....|+|-.+| ++=+..|
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-------- 123 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-------- 123 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------
Confidence 4678889999999999999999999999999999888888899999999999999999844 4444445
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccch------------
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF------------ 1152 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lS------------ 1152 (1652)
.|+.....=-++.... +.. ..-|+-.+--+...|+|..|+..++..+++...+.+...+.
T Consensus 124 d~~~~~~tr~~LLql~-~~~-------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLR-PSQ-------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred hhhhHHHHHHHHHHhh-hhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 5554444433334444 333 45566666667778999999999999988665333321111
Q ss_pred -----HHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHH--------
Q 000330 1153 -----LSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM-------- 1219 (1652)
Q Consensus 1153 -----LsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~sm-------- 1219 (1652)
+.+.+..|....++++ -.+.|....+++++..+..+||..+ |..++.-+|||......+
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~-----Dkla~~e~ka~l~~kl~~lEeA~~~---y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIV-----DKLAFEETKADLLMKLGQLEEAVKV---YRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHH-----HHHHHhhhHHHHHHHHhhHHhHHHH---HHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 1222233333333222 0455666778888888888888777 777777777775432211
Q ss_pred ----HH-HHHhh-----------------hcCCcchhhhh----------------------hhc---------------
Q 000330 1220 ----AV-NSVEL-----------------YSNGESLEKET----------------------NLR--------------- 1240 (1652)
Q Consensus 1220 ----A~-dYY~~-----------------~~ndesla~~~----------------------~~k--------------- 1240 (1652)
++ .-|.. +.+++++.... ++.
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 01 01110 01111111100 000
Q ss_pred --------------hhhHhHHHHHHHH-------HHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHH
Q 000330 1241 --------------SAHCFAVNHIWCM-------AVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVG 1298 (1652)
Q Consensus 1241 --------------t~~~fKLN~IR~l-------I~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~sv 1298 (1652)
-.++-|...+.++ -..++.+.|..+.+.++..+|+=+++-+.-++|.+..+ .+.|...
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0011122222221 12559999999999999999999999888888877664 6678888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000330 1299 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 1340 (1652)
Q Consensus 1299 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~f 1340 (1652)
+++|-+.+--+.- +=--++.+.++.+..++|..+|..|
T Consensus 428 l~ea~elD~aDR~----INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 428 LDEAQELDTADRA----INSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHhccchhHH----HHHHHHHHHHHccccHHHHHHHHHh
Confidence 8999988866665 2113567899999999999999773
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0018 Score=80.03 Aligned_cols=314 Identities=13% Similarity=0.148 Sum_probs=187.7
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH----HHHHHHhcCCCcccch
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA----LWLMYINSRTPLNHRL 1083 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~----LwlmYInsr~slddrl 1083 (1652)
...|+|++||++|+|.++.+-.+-+.-.....+-. ..-..++ ..++|...|. +|. .+..||..+
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~g------- 189 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQVQ--LLQSVPEVPEDSYELLYNTACILIENG------- 189 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcc-------
Confidence 34588999999999999999998887776544421 1111222 6677777776 555 788999999
Q ss_pred hhHHHHHHHHHHh----hhc-CCCCc--chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc--------------
Q 000330 1084 DAYDAALSVLCRC----ASA-SDGDE--MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA-------------- 1142 (1652)
Q Consensus 1084 ~~YdkAI~aLe~l----as~-~~~Dr--~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~A-------------- 1142 (1652)
.|+.|++.|+.. -+. .+.|. ++-=..|-=|-+||+..+.+.|+.++|.+.+..+....
T Consensus 190 -ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 190 -KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred -cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999776 111 12232 12223444566888889999999999999777776411
Q ss_pred --cCCCC---cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000330 1143 --TGSND---RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1216 (1652)
Q Consensus 1143 --l~g~s---E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1216 (1652)
+.+.. ++++..++=..+.+..+.+.+.|...+ ..+|+. .+.+-|-.|+......+ ...+-.+-|+-.+-.
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N-~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ 344 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN-NALLALFTNKMDQVREL---SASLPGMSPESLFPI 344 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHH---HHhCCccCchHHHHH
Confidence 11111 112222334455566666666777777 444443 33444445543333322 222222222222211
Q ss_pred HHHHHHHHhh--hcCCcchhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHH--------HHHHhCCCchhH-HHH
Q 000330 1217 IEMAVNSVEL--YSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLE--------KYIKLYPSCLEL-VLM 1282 (1652)
Q Consensus 1217 ~smA~dYY~~--~~ndesla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~Lfd--------klLk~~P~d~eL-~L~ 1282 (1652)
+-.+.-.+.. ..+-..+-... .+.-....++-.++..|..++++.|+..+. .+.+.--.=.-+ .+.
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence 1110000000 00000000000 011123344454666666779999998888 555544333344 666
Q ss_pred HHHHhhcccCCccHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1283 KARLQKHDFGDLSSVGFEEALIKWPKGVP---GIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1283 AAyL~~K~m~~~A~svle~AL~~~PkNa~---g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
+.|...++ ...|..+|++|+.-|-+... ...|.|-+++...++.|+..+|..+.++
T Consensus 425 ~l~~~~~~-~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 425 ALYYKIKD-NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred HHHHhccC-CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 67766665 77788999999998887766 7889999999999999999999999877
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.9e-05 Score=73.71 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=88.6
Q ss_pred hhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000330 986 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 986 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
|+..|.+...-+.+|..++.. |+++.|..+|..+++++|+++.+|+.++.+|...+....+..+|++|++.+|.+
T Consensus 10 l~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 10 LGLDSEQLEQIYALAYNLYQQ-----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HcCChhhHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344556666677777777766 457999999999999999999999999999999998889999999999999998
Q ss_pred HH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000330 1066 YA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1066 Y~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1103 (1652)
.. ++..|...+ .+++|+..|....+.. |+
T Consensus 85 ~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~-p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLALG--------EPESALKALDLAIEIC-GE 117 (135)
T ss_pred hHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhc-cc
Confidence 66 677788888 8999999998888877 44
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00035 Score=86.50 Aligned_cols=362 Identities=17% Similarity=0.152 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000330 1112 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1191 (1652)
Q Consensus 1112 LDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1191 (1652)
.|++|+.++++..+|++++|+..|...+. .+-|+ +.+..+-+.+|+..|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~--------------------~I~Dk----------~~~~E~rA~ll~kLg~ 53 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK--------------------QILDK----------LAVLEKRAELLLKLGR 53 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh--------------------hCCCH----------HHHHHHHHHHHHHcCC
Confidence 58999999999999999999996644432 12343 3345567888999999
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000330 1192 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 1271 (1652)
Q Consensus 1192 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk 1271 (1652)
.+||..+ |..+++.+|+|....-.+. ...-. .. -+.-++.+...++|+.+-+
T Consensus 54 ~~eA~~~---y~~Li~rNPdn~~Yy~~L~-~~~g~---------------------~~---~~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 54 KEEAEKI---YRELIDRNPDNYDYYRGLE-EALGL---------------------QL---QLSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHHHHHH---HHHHHHHCCCcHHHHHHHH-HHHhh---------------------hc---ccccccHHHHHHHHHHHHH
Confidence 9999999 9999999999987665431 11100 00 0011133444445555555
Q ss_pred hCCCchhH-H-------------HHHHHHhh--cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChH----
Q 000330 1272 LYPSCLEL-V-------------LMKARLQK--HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHD---- 1331 (1652)
Q Consensus 1272 ~~P~d~eL-~-------------L~AAyL~~--K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d---- 1331 (1652)
.+|.+.-+ . ++..||.. ++ +..+..+-.+.|-.+|.....+..+-..|+...-..+.+.
T Consensus 106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 55443332 1 12222211 11 2222222122222233333322222222222111111110
Q ss_pred -----HHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000330 1332 -----FAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1405 (1652)
Q Consensus 1332 -----~ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1405 (1652)
-..-|..-||.+--+... ..++|++.+.++..+.+. +-|+| ...+-+|-. .|+++
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely-----------~~KarilKh--~G~~~ 245 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELY-----------MTKARILKH--AGDLK 245 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHH-----------HHHHHHHHH--CCCHH
Confidence 000111123333222222 444555555555444321 35667 677778877 88888
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHH
Q 000330 1406 EARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQ 1485 (1652)
Q Consensus 1406 EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~lAR~YI~~i~k~rv~~ 1485 (1652)
+|..++|.|-+.+... -..-+..|.|+.-.+ ..++|+.|-. +|.+...
T Consensus 246 ~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~-~~e~A~~~~~--------------~Ftr~~~--------------- 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD--RYINSKCAKYLLRAG-RIEEAEKTAS--------------LFTREDV--------------- 293 (517)
T ss_pred HHHHHHHHHHhCChhh--HHHHHHHHHHHHHCC-CHHHHHHHHH--------------hhcCCCC---------------
Confidence 8888888888888866 333445555655444 3555555433 3433221
Q ss_pred HHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhH
Q 000330 1486 LIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESV 1565 (1652)
Q Consensus 1486 liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~ 1565 (1652)
+..++.+..=-+|+ +..+.++..- =.+|++||--+..+.+||. +---.+.
T Consensus 294 ----------~~~~~L~~mQc~Wf--------------~~e~a~a~~r--~~~~~~ALk~~~~v~k~f~----~~~~DQf 343 (517)
T PF12569_consen 294 ----------DPLSNLNDMQCMWF--------------ETECAEAYLR--QGDYGLALKRFHAVLKHFD----DFEEDQF 343 (517)
T ss_pred ----------CcccCHHHHHHHHH--------------HHHHHHHHHH--HhhHHHHHHHHHHHHHHHH----HHhcccc
Confidence 01112333334675 3444444443 2689999999999999988 4444455
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000330 1566 LFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1633 (1652)
Q Consensus 1566 ~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfs~~LW~~y~~~~~~ 1633 (1652)
-|-.-.+==..+ ..||+--.|.+.|.+ +.||-+|. ..+++.|+.+--.
T Consensus 344 DFH~Yc~RK~t~---------r~Y~~~L~~ed~l~~-----~~~y~raa------~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 344 DFHSYCLRKMTL---------RAYVDMLRWEDKLRS-----HPFYRRAA------KGAIRIYLELHDK 391 (517)
T ss_pred cHHHHHHhhccH---------HHHHHHHHHHHHhhc-----CHHHHHHH------HHHHHHHHHHhcC
Confidence 555443333333 467999999999998 89999986 5677888877543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0024 Score=72.80 Aligned_cols=128 Identities=16% Similarity=0.064 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT---YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1067 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~---yl~lY~~~~~~eea~emlekAVelnP~NY~- 1067 (1652)
..+.+.-.|..+... |+++.|+.++.++|+.+|++..+|.. ++......+....+...++.+....|....
T Consensus 42 ~~e~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 116 (355)
T cd05804 42 ERERAHVEALSAWIA-----GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL 116 (355)
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHH
Confidence 345565556655554 45699999999999999999999883 222222223333344445444466666655
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1068 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1068 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
++..|...+ .|++|+..+++..... |+. ..++..+.++|.+.|++++|+..+.+...
T Consensus 117 ~~~~a~~~~~~G--------~~~~A~~~~~~al~~~-p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 117 LGMLAFGLEEAG--------QYDRAEEAARRALELN-PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHhhC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 445777788 8899999999999988 443 57788999999999999999997776664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-05 Score=76.66 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=82.3
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHH
Q 000330 996 CVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM 1071 (1652)
Q Consensus 996 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwlm 1071 (1652)
|..++..+.. .|+++.|+..|.+++.++|.++.+|+.++.++...+...++.+.|++|++++|++.. ++..
T Consensus 27 ~~~~g~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQ-----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4455554443 467899999999999999999999999999999999999999999999999999977 6678
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000330 1072 YINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1072 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1104 (1652)
|...+ .+++|+..|....+.. |+.
T Consensus 102 l~~~g--------~~~eAi~~~~~Al~~~-p~~ 125 (144)
T PRK15359 102 LKMMG--------EPGLAREAFQTAIKMS-YAD 125 (144)
T ss_pred HHHcC--------CHHHHHHHHHHHHHhC-CCC
Confidence 88888 8899999999988887 443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0027 Score=78.66 Aligned_cols=384 Identities=15% Similarity=0.110 Sum_probs=205.3
Q ss_pred hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHHHH-HHHhhhcCCC
Q 000330 1027 ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSV-LCRCASASDG 1102 (1652)
Q Consensus 1027 INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI~a-Le~las~~~~ 1102 (1652)
.++.+.-+.-..++++|+.+.-.++.+-|++-++++-+.+. -..|- +-..|+.+ +.+.....+.
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~------------a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL------------AVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH------------HHHHhhhHHHHHhccCCCc
Confidence 45555556666666666666666666666666666655555 11111 11122222 2222222222
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH---HHHhh
Q 000330 1103 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY---LVIYR 1179 (1652)
Q Consensus 1103 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY---llrYr 1179 (1652)
+- -|.++-.+=.+.-.|+|.+||+ |+.+|.. .-+.-|..+|.+ -..| +--.+
T Consensus 173 ~s-------yel~yN~Ac~~i~~gky~qA~e----lL~kA~~----------~~~e~l~~~d~~----eEeie~el~~Ir 227 (652)
T KOG2376|consen 173 DS-------YELLYNTACILIENGKYNQAIE----LLEKALR----------ICREKLEDEDTN----EEEIEEELNPIR 227 (652)
T ss_pred ch-------HHHHHHHHHHHHhcccHHHHHH----HHHHHHH----------HHHHhhcccccc----hhhHHHHHHHHH
Confidence 22 5777778888899999999999 5543311 112223445554 2223 22235
Q ss_pred ccchHHHhhhhhhhhhhccCCCCcccchhhHHHH----HHHHHHHHHHHhhhcCCcchhhhh--hhchhhHhHH------
Q 000330 1180 KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA----IKLIEMAVNSVELYSNGESLEKET--NLRSAHCFAV------ 1247 (1652)
Q Consensus 1180 vLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdna----lAL~smA~dYY~~~~ndesla~~~--~~kt~~~fKL------ 1247 (1652)
+.+.=+++..|..+|+..| |+.+++.+|-.. ++.-.+ . ++.++.....+. -.+-.+++++
T Consensus 228 vQlayVlQ~~Gqt~ea~~i---y~~~i~~~~~D~~~~Av~~NNL----v-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSI---YVDIIKRNPADEPSLAVAVNNL----V-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHhcchHHHHHH---HHHHHHhcCCCchHHHHHhcch----h-hhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 5667778888999999998 887766554333 322111 1 112222221111 0011111111
Q ss_pred --------HHHHHHH---H-hcCHHHHHHHHHHHHHhCCCch-hHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHH
Q 000330 1248 --------NHIWCMA---V-LNGLECSMNLLEKYIKLYPSCL-ELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQ 1314 (1652)
Q Consensus 1248 --------N~IR~lI---~-LEDse~A~~LfdklLk~~P~d~-eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~ 1314 (1652)
+.++... . .+--.++++++-++-...|... ++.|-.+++...+...++..++..-....|.+.-.+.
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 1111111 1 3366777777777666665543 3455555543333477889999999999999954333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----hhhhccc--ccccchhhhcccCCCCCCCCCCC-------CCccccccc
Q 000330 1315 CIWNQYVEYALQNGRHDFAAELMDRWFH----SVWKVQY--SQVEISDPLVADMSHSSPESTST-------SDPEFSVSN 1381 (1652)
Q Consensus 1315 caW~QLIq~al~~en~d~ai~Lc~~ff~----gia~~Q~--~~deALDaLrkgns~i~~es~s~-------~vSDfy~~~ 1381 (1652)
.-.+|+.+.+|++..|+++...|.. ++...+. ....++.++.....-. ++.++ ....-.++.
T Consensus 380 ---L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~--~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 380 ---LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDN--DSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCC--ccHHHHHHHHHHHHHHhcccc
Confidence 3348889999999999999996442 2222222 3333333333221110 00000 000000000
Q ss_pred ccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHH--
Q 000330 1382 RNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYL-- 1458 (1652)
Q Consensus 1382 ~~q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYL-- 1458 (1652)
-+.-.+|++ +=+....|+-+||..-||.-++++|+. .++|---..= ....|-++|+.|+..+.-..+..
T Consensus 455 ----~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a--~~~~d~eka~~l~k~L~p~~~l~~v 526 (652)
T KOG2376|consen 455 ----IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTA--YARLDPEKAESLSKKLPPLKGLKAV 526 (652)
T ss_pred ----hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHH--HHhcCHHHHHHHhhcCCCcccchhc
Confidence 011245555 445567899999999999999999976 4444332222 12346789999998442222222
Q ss_pred --h----hhccccccc
Q 000330 1459 --D----RARSLPYLK 1468 (1652)
Q Consensus 1459 --D----TAWILf~~~ 1468 (1652)
| +.|+.+-++
T Consensus 527 dVd~LE~s~ga~~~~~ 542 (652)
T KOG2376|consen 527 DVDALEKSDGAKYSEA 542 (652)
T ss_pred CchHhhhccCcchhhh
Confidence 2 258888776
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0015 Score=78.29 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHH
Q 000330 1014 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAAL 1090 (1652)
Q Consensus 1014 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI 1090 (1652)
+..+..++-+-+...|++..+...++.+|+..|+..++..-|+++--++|++.. ++-|.+..+. .|++--
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-------~~e~~~ 286 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-------GCEQDS 286 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-------CHhhHH
Confidence 577888889999999999999999999999999888899999999999998877 7777777762 344444
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000330 1091 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1170 (1652)
Q Consensus 1091 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1170 (1652)
..-|.+.+..+.. + .-|+.-.+++--.++|.-|+. +-..++.. +|+ .+..|
T Consensus 287 ~L~~~Lf~~~~~t---a-----~~wfV~~~~l~~~K~~~rAL~----~~eK~I~~-~~r-----~~~al----------- 337 (564)
T KOG1174|consen 287 ALMDYLFAKVKYT---A-----SHWFVHAQLLYDEKKFERALN----FVEKCIDS-EPR-----NHEAL----------- 337 (564)
T ss_pred HHHHHHHhhhhcc---h-----hhhhhhhhhhhhhhhHHHHHH----HHHHHhcc-Ccc-----cchHH-----------
Confidence 4445565544222 2 334455566667788888887 33333332 222 12222
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhc-cCCCCcccchhhHHHHHHHH-HHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000330 1171 CCVYLVIYRKLPDAVLQLLECEKELFA-IDWPPVQLEDDEKQRAIKLI-EMAVNSVELYSNGESLEKETNLRSAHCFAVN 1248 (1652)
Q Consensus 1171 ~~iYllrYrvLPGd~y~q~e~~KEAf~-I~W~y~~vlk~EPdnalAL~-smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1248 (1652)
.|-|+++.+.++..+|.- . -.|.-|- .. .+.|+ -
T Consensus 338 ---------ilKG~lL~~~~R~~~A~IaF------------R~Aq~Lap~r-L~~Y~----------------------G 373 (564)
T KOG1174|consen 338 ---------ILKGRLLIALERHTQAVIAF------------RTAQMLAPYR-LEIYR----------------------G 373 (564)
T ss_pred ---------HhccHHHHhccchHHHHHHH------------HHHHhcchhh-HHHHH----------------------H
Confidence 345666777777666522 1 0111111 11 23333 2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHH--hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000330 1249 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARL--QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1325 (1652)
Q Consensus 1249 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL--~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1325 (1652)
++-+|.+.+...+|+-+..-.++.-|.++.- .|+++-+ ..--|-++|...++++|.++|.-.+ +=+-+++...
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~----AV~~~AEL~~ 449 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP----AVNLIAELCQ 449 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH----HHHHHHHHHH
Confidence 4667777779999999999999999999987 7775443 3333567899999999999999999 6677799999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000330 1326 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1405 (1652)
Q Consensus 1326 ~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1405 (1652)
..|.+..++.|+++++.-++ | |..--.|||.+-- .+.++
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~------------------------------D---------~~LH~~Lgd~~~A--~Ne~Q 488 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFP------------------------------D---------VNLHNHLGDIMRA--QNEPQ 488 (564)
T ss_pred hhCccchHHHHHHHHHhhcc------------------------------c---------cHHHHHHHHHHHH--hhhHH
Confidence 99999999999988554322 1 1122678998888 99999
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHH
Q 000330 1406 EARLAIDAALKAAASEHFKHCVRE 1429 (1652)
Q Consensus 1406 EAfaAYDKALkanp~N~~i~cLNN 1429 (1652)
+|.+-|-+||..+|.+ ...+.-
T Consensus 489 ~am~~y~~ALr~dP~~--~~sl~G 510 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKS--KRTLRG 510 (564)
T ss_pred HHHHHHHHHHhcCccc--hHHHHH
Confidence 9999999999999988 665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0016 Score=78.91 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=95.5
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000330 1250 IWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1326 (1652)
Q Consensus 1250 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1326 (1652)
|..|.. ..+.|.|+..|+++|+++|.-..+ .|.+ -||++|+ ...|+..|.+|+.++|.+-. +|+=|-|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyR----AWYGLGQ---- 406 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYR----AWYGLGQ---- 406 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHH----HHhhhhH----
Confidence 445544 449999999999999999999999 4554 5789997 88999999999999999999 9976655
Q ss_pred cCChHHHHHHHHHHHHhhhhccc-----------------------ccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000330 1327 NGRHDFAAELMDRWFHSVWKVQY-----------------------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1383 (1652)
Q Consensus 1327 ~en~d~ai~Lc~~ff~gia~~Q~-----------------------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1383 (1652)
+.+++.-=|-++.|+|+ +.++|+.-+++...... ...+-|
T Consensus 407 ------aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l----- 469 (559)
T KOG1155|consen 407 ------AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSAL----- 469 (559)
T ss_pred ------HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHH-----
Confidence 33333332223333332 66677776665522211 023334
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000330 1384 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1417 (1652)
Q Consensus 1384 q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1417 (1652)
..||..+-+ .++.+||-.+|+++++.
T Consensus 470 ------~~LakLye~--l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 470 ------VRLAKLYEE--LKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ------HHHHHHHHH--HHhHHHHHHHHHHHHHH
Confidence 778888888 78888999999998874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00025 Score=85.51 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1087 (1652)
+..++|.-.|+|||.+||....+|..+++=|..+++...+.+.|++||+.||.+|. |+++|.-.. +=.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh~ 415 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MHF 415 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------chH
Confidence 34589999999999999999999999999999999999999999999999999998 889998877 444
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1167 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1167 (1652)
=|+-.|-++..--|.| .-+|.+|-++|-..++.+.||.-+.|--. -|+-++.....--..|..++|-..
T Consensus 416 YaLyYfqkA~~~kPnD--------sRlw~aLG~CY~kl~~~~eAiKCykrai~---~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 416 YALYYFQKALELKPND--------SRLWVALGECYEKLNRLEEAIKCYKRAIL---LGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHHHhcCCCc--------hHHHHHHHHHHHHhccHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHHhHHH
Confidence 4565555555555456 46999999999999999999997766552 222333444444456777777666
Q ss_pred hhHH
Q 000330 1168 FWVC 1171 (1652)
Q Consensus 1168 AWL~ 1171 (1652)
|..+
T Consensus 485 Aa~~ 488 (559)
T KOG1155|consen 485 AAQY 488 (559)
T ss_pred HHHH
Confidence 6333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00019 Score=84.60 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1086 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1086 (1652)
.|+|+.|+.+|.+||+.+|+++.+|+.++.+|...+...++...|++|++++|++.. ++..|...+ .|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg--------~~ 86 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE--------EY 86 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC--------CH
Confidence 367899999999999999999999999999999999999999999999999998776 677888888 99
Q ss_pred HHHHHHHHHhhhcCCCC
Q 000330 1087 DAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1087 dkAI~aLe~las~~~~D 1103 (1652)
+.|+..|+++....+.+
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999887333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=85.08 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----
Q 000330 995 QCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1067 (1652)
Q Consensus 995 lWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----- 1067 (1652)
-..++|..+=+++. -+.++|.+|++.|..||+++|++++.|+.-+..|++.+.-+.+..-|++|++++| +|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~R 154 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGR 154 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHH
Confidence 47788888888875 3578999999999999999999999999999999999999999999999999996 666
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1104 (1652)
|++.|..++ .|++|+++|-....-. |+.
T Consensus 155 LG~A~~~~g--------k~~~A~~aykKaLeld-P~N 182 (304)
T KOG0553|consen 155 LGLAYLALG--------KYEEAIEAYKKALELD-PDN 182 (304)
T ss_pred HHHHHHccC--------cHHHHHHHHHhhhccC-CCc
Confidence 889999999 8999999997766665 776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00033 Score=89.37 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=105.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1085 (1652)
.-|.|+.|..+|.+|++..|+.+.++..++.+..+.+.-+++..-+++|++.+|+|.. ++......+ .
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g--------~ 169 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG--------Q 169 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--------c
Confidence 3467899999999999999999999999999999999999999999999999999999 666677777 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1086 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1086 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
|++|+.+|+++.+.+ ++. .+.++.+.+++...|+.+.|...+.+-..
T Consensus 170 ~~~A~~~y~~~~~~~-p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 170 SEQADACFERLSRQH-PEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hHHHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999977 566 89999999999999999999998777665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=87.00 Aligned_cols=230 Identities=18% Similarity=0.273 Sum_probs=157.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000330 1052 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1131 (1652)
Q Consensus 1052 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1131 (1652)
.+-|++-|.-+|++--+|.-|+.-...+. ..++|+.+.|++...-+.- ...--+-+|.+++.|+.+-|.-+..
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~Lels----EiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELS----EIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhh----hhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 36789999999999999999998775555 5689999999987653111 1223389999999999999966655
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000330 1132 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1211 (1652)
Q Consensus 1132 I~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPd 1211 (1652)
..++.|.-+ +|..| ..|.. +..+|.-.++.++|-.+
T Consensus 1517 ~kVFeRAcq-----------------------------ycd~~-~V~~~-L~~iy~k~ek~~~A~el------------- 1552 (1710)
T KOG1070|consen 1517 KKVFERACQ-----------------------------YCDAY-TVHLK-LLGIYEKSEKNDEADEL------------- 1552 (1710)
T ss_pred HHHHHHHHH-----------------------------hcchH-HHHHH-HHHHHHHhhcchhHHHH-------------
Confidence 555444443 11111 12333 23455556666655444
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC--chhHHHHHHHHh
Q 000330 1212 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPS--CLELVLMKARLQ 1287 (1652)
Q Consensus 1212 nalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~--d~eL~L~AAyL~ 1287 (1652)
+.+ | .. +.-+.-++ .++..++..++-++|+.++.++|+.-|. -+++.=.-|.|+
T Consensus 1553 --l~~--m----~K--------------KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1553 --LRL--M----LK--------------KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred --HHH--H----HH--------------HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 111 1 11 11112222 2233434455779999999999999999 666644444555
Q ss_pred hccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-------------HHHhhhhccc--cc
Q 000330 1288 KHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------------WFHSVWKVQY--SQ 1351 (1652)
Q Consensus 1288 ~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~-------------ff~gia~~Q~--~~ 1351 (1652)
-|++ ++.++..|+..|...||..- .|+-||.+.+..++.+-+..|.+| ||+-+=.|-+ ..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtD----lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTD----LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchh----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 5554 88999999999999999999 999999999999999999999999 6766666555 24
Q ss_pred ccchhhh
Q 000330 1352 VEISDPL 1358 (1652)
Q Consensus 1352 deALDaL 1358 (1652)
++.++..
T Consensus 1687 e~~vE~V 1693 (1710)
T KOG1070|consen 1687 EKNVEYV 1693 (1710)
T ss_pred hhhHHHH
Confidence 4444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0025 Score=79.19 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=71.3
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000330 1250 IWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1327 (1652)
Q Consensus 1250 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1327 (1652)
+.|... .++.++|+++.+++++.-|+.+++-+.-+++ ...+...+|...++.|..+++.+-- +=...+.+.++.
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy----iNsK~aKy~LRa 275 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY----INSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH----HHHHHHHHHHHC
Confidence 444444 7799999999999999999999994444454 4444478999999999999999887 555568999999
Q ss_pred CChHHHHHHHHHH
Q 000330 1328 GRHDFAAELMDRW 1340 (1652)
Q Consensus 1328 en~d~ai~Lc~~f 1340 (1652)
|..++|..++..|
T Consensus 276 ~~~e~A~~~~~~F 288 (517)
T PF12569_consen 276 GRIEEAEKTASLF 288 (517)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0044 Score=77.31 Aligned_cols=110 Identities=20% Similarity=0.385 Sum_probs=75.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccch----hhHHHHHHHHHHh
Q 000330 1021 LSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRL----DAYDAALSVLCRC 1096 (1652)
Q Consensus 1021 LsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl----~~YdkAI~aLe~l 1096 (1652)
|..=|--||.+.-.|..|...-.+. ......-.||+|.+.=|.+|-||.-||+.|+.---.+ -+|+.--..||+.
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~s-p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAGS-PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHccC-ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 3444556899999999998885442 2445677899999999999999999997663222111 2333333334433
Q ss_pred hhc-CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1097 ASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1097 as~-~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.-- ++-+ -||+.-+++...+|++-.-..+++|-+.
T Consensus 95 lv~mHkmp---------RIwl~Ylq~l~~Q~~iT~tR~tfdrALr 130 (835)
T KOG2047|consen 95 LVFMHKMP---------RIWLDYLQFLIKQGLITRTRRTFDRALR 130 (835)
T ss_pred HHHHhcCC---------HHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 321 2223 3899999999999999998888888774
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=85.31 Aligned_cols=109 Identities=18% Similarity=0.330 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHH----HHHHHhcCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL----WLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~L----wlmYInsr~slddrl~~Yd 1087 (1652)
++++.|+++|.+..+.+|+ +++.++.+|...++..++...+.+|++.+|.++.| +.++++.+ .|+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--------~~~ 251 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--------KYE 251 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHH
Confidence 5689999999999999975 67778999988888888999999999999999994 45566777 889
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1139 (1652)
.|+.+..++.... |+. .+.|..|+++|...|++++|+.+||-+=
T Consensus 252 lAL~iAk~av~ls-P~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSE-------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chh-------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999998 565 8999999999999999999999888655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0068 Score=75.00 Aligned_cols=284 Identities=14% Similarity=0.076 Sum_probs=167.9
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1067 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1067 (1652)
+.++-.+.|..+.-.- +|..-+.++.-.||.||=...++...+..++..+++.+...+=-+-|+..|.+-.
T Consensus 243 ~~dll~~~ad~~y~~c-----~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGC-----RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcC-----hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3466677776666553 4577778888888888887777777777777777777766666677777777654
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1147 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1147 (1652)
++.+|.-.+ .|.+|+..|-....-. +.= -..|+...+-|.-.|..|+|++.+.+--+. ..|..
T Consensus 318 Vg~YYl~i~--------k~seARry~SKat~lD-~~f-------gpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~h 380 (611)
T KOG1173|consen 318 VGCYYLMIG--------KYSEARRYFSKATTLD-PTF-------GPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCH 380 (611)
T ss_pred HHHHHHHhc--------CcHHHHHHHHHHhhcC-ccc-------cHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCc
Confidence 667777777 7788888885544433 221 346778888888888888888755433221 12332
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhh
Q 000330 1148 RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1226 (1652)
Q Consensus 1148 E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~ 1226 (1652)
. ...---+ .|-.++. ..|+..| ...|.+-|-+-+.-++.--=+|. ..+-.-|...|..|+.-...
T Consensus 381 l-P~LYlgm-ey~~t~n---~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~---------~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 381 L-PSLYLGM-EYMRTNN---LKLAEKFFKQALAIAPSDPLVLHELGVVAYT---------YEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred c-hHHHHHH-HHHHhcc---HHHHHHHHHHHHhcCCCcchhhhhhhheeeh---------HhhhHHHHHHHHHHHHHhhh
Confidence 2 1111111 1221111 2455555 44444444443333332111111 12223344444443211111
Q ss_pred hcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHH
Q 000330 1227 YSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEA 1302 (1652)
Q Consensus 1227 ~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~A 1302 (1652)
.+ +++. -.-|+ |+.-.+--++..++|+..|+++|.++|.++.. .+..-|..+++ .+.|+.-|.+|
T Consensus 447 -~~--------~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKa 515 (611)
T KOG1173|consen 447 -VL--------NEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKA 515 (611)
T ss_pred -cc--------cccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 11 1122 34444 32222222668899999999999999999999 55555545554 99999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHc
Q 000330 1303 LIKWPKGVPGIQCIWNQYVEYALQN 1327 (1652)
Q Consensus 1303 L~~~PkNa~g~~caW~QLIq~al~~ 1327 (1652)
|.+.|+|.- + -+++..+++.
T Consensus 516 L~l~p~n~~----~-~~lL~~aie~ 535 (611)
T KOG1173|consen 516 LALKPDNIF----I-SELLKLAIED 535 (611)
T ss_pred HhcCCccHH----H-HHHHHHHHHh
Confidence 999999977 3 2455555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00028 Score=60.58 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH
Q 000330 995 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1070 (1652)
Q Consensus 995 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl 1070 (1652)
.|..+|..++.+ |+++.|+.+|.++++.+|.+..+|+.++.+|...+....+.++|+++++..|.+.. ++.
T Consensus 2 ~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKL-----GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHH-----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 467777777664 56799999999999999999999999999999999889999999999999998875 556
Q ss_pred HHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000330 1071 MYINSRTPLNHRLDAYDAALSVLCRCASAS 1100 (1652)
Q Consensus 1071 mYInsr~slddrl~~YdkAI~aLe~las~~ 1100 (1652)
+|...+ .+++|+..+.+.....
T Consensus 77 ~~~~~~--------~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLG--------KYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHH--------hHHHHHHHHHHHHccC
Confidence 777777 7899999887766554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0012 Score=81.58 Aligned_cols=240 Identities=15% Similarity=0.095 Sum_probs=143.5
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1064 (1652)
-+++.|.+.+.|..|-.....-+.. ..|...|.+||++||++-++...|+-.|...+-...+..||.+=++..|.
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E-----~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENE-----QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccch-----HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 3444567777777776554433222 56777777777777777777777777777777666777777777777765
Q ss_pred CHHHHHHHHhcC----CCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000330 1065 SYALWLMYINSR----TPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1065 NY~LwlmYInsr----~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1138 (1652)
-+++.---.+.. .++.+.. ...+-.+.|-+++...+ .| -||-..|-=||..+|+|++||..+.-.
T Consensus 386 y~~l~~a~~~~~~~~~~s~~~~~-~l~~i~~~fLeaa~~~~~~~D--------pdvQ~~LGVLy~ls~efdraiDcf~~A 456 (579)
T KOG1125|consen 386 YVHLVSAGENEDFENTKSFLDSS-HLAHIQELFLEAARQLPTKID--------PDVQSGLGVLYNLSGEFDRAVDCFEAA 456 (579)
T ss_pred chhccccCccccccCCcCCCCHH-HHHHHHHHHHHHHHhCCCCCC--------hhHHhhhHHHHhcchHHHHHHHHHHHH
Confidence 444322111111 1223322 45555555555555553 23 466666666777777777777743333
Q ss_pred cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHH
Q 000330 1139 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1218 (1652)
Q Consensus 1139 Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~s 1218 (1652)
++ +.| ++...==.
T Consensus 457 L~-----v~P--------------------------------------------------------------nd~~lWNR 469 (579)
T KOG1125|consen 457 LQ-----VKP--------------------------------------------------------------NDYLLWNR 469 (579)
T ss_pred Hh-----cCC--------------------------------------------------------------chHHHHHH
Confidence 32 232 11111101
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCcc
Q 000330 1219 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLS 1295 (1652)
Q Consensus 1219 mA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A 1295 (1652)
++ .- .+ -+.+++|++.|.++|++.|.-+-. -|.-++|.... -++|
T Consensus 470 LG------------------------------At-LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA 517 (579)
T KOG1125|consen 470 LG------------------------------AT-LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEA 517 (579)
T ss_pred hh------------------------------HH-hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHH
Confidence 10 01 12 238899999999999999999988 77777877664 7789
Q ss_pred HHHHHHHHHhCCCCCc----h--HHHHHHHHHHHHHHcCChHHHHHHH
Q 000330 1296 SVGFEEALIKWPKGVP----G--IQCIWNQYVEYALQNGRHDFAAELM 1337 (1652)
Q Consensus 1296 ~svle~AL~~~PkNa~----g--~~caW~QLIq~al~~en~d~ai~Lc 1337 (1652)
+.-|..||.+.+++.. . ---+|..|=...+.-++.|.+.+.+
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9999999999998332 1 1236644433334445555455554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=65.34 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000330 998 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 998 elAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
.+|..++.. |+++.|..+|..+++.+|.++.+|+.++.++..++...++..+|++|++.+|+|
T Consensus 2 ~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQ-----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHC-----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555554 678999999999999999999999999999999999999999999999999986
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00035 Score=80.86 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=94.1
Q ss_pred hhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHh
Q 000330 984 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---SVGKDDMFSYSVK 1060 (1652)
Q Consensus 984 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~---~eea~emlekAVe 1060 (1652)
.+|-+.|.|.+.|+.|+.-|+..+. ++.|+..|.+|+++.|+++++|--|+..++...+ ..++.++|.+|++
T Consensus 147 ~~L~~nP~d~egW~~Lg~~ym~~~~-----~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 147 THLQQNPGDAEGWDLLGRAYMALGR-----ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHhCCCCchhHHHHHHHHHHhcc-----hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3677789999999999999999965 5999999999999999999999999888775554 4458999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000330 1061 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1061 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1103 (1652)
++|.|.. |+.-|..++ .|.+|+...+.|.+..+++
T Consensus 222 ~D~~~iral~lLA~~afe~g--------~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQG--------DYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cCCccHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCCCC
Confidence 9999988 777788888 8999999999999988555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=80.25 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1090 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~ee-a~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1090 (1652)
++.++|..+|.+|++-.+....+|..+|.+.+...++.. |...||.+++.-|.+..+|+.|++....++ ..+.|+
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~----d~~~aR 90 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN----DINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-----HHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC----cHHHHH
Confidence 457999999999998888899999999999888666666 999999999999999999999999886665 458999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1091 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1091 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.+||+..+.. +.. .....+|-..++++..-|+++.+.....|+.+
T Consensus 91 ~lfer~i~~l-~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 91 ALFERAISSL-PKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHCCTS-SCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-Cch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887 342 01467999999999999999998887777765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.032 Score=69.77 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=68.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhh
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~ 1085 (1652)
+.|..+.+..+|.+|+..-|.+..+|..|...-..... ++.+++.|++|+.++--.|. ||.+||..... .. .
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~-qk---s 166 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG-QK---S 166 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc-cc---c
Confidence 46778999999999999999999999999888765444 44599999999999987777 99999987621 11 4
Q ss_pred HHHHHHHHHHhhhc
Q 000330 1086 YDAALSVLCRCASA 1099 (1652)
Q Consensus 1086 YdkAI~aLe~las~ 1099 (1652)
+.+-..+|++..+.
T Consensus 167 ~k~v~~iyeRilei 180 (577)
T KOG1258|consen 167 WKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHHhh
Confidence 56666777666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0062 Score=71.59 Aligned_cols=247 Identities=12% Similarity=0.093 Sum_probs=140.4
Q ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000330 1247 VNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1323 (1652)
Q Consensus 1247 LN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1323 (1652)
+.++|-++. .+.++.|+.+++++++.+|.+.++|.+-..+..+-+ ..+++..+++|+..+|+|.+ +|+--...
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq----aW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ----IWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH----HhHHHHHH
Confidence 345666655 789999999999999999999999766555433322 46899999999999999999 66432222
Q ss_pred HHHcCC--hHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhh
Q 000330 1324 ALQNGR--HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1401 (1652)
Q Consensus 1324 al~~en--~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lq 1401 (1652)
....+. ++.++.++.+ ++. + .+.-| ..+...|-++.. .
T Consensus 116 l~~l~~~~~~~el~~~~k-----------------al~-----~--------dpkNy--------~AW~~R~w~l~~--l 155 (320)
T PLN02789 116 AEKLGPDAANKELEFTRK-----------------ILS-----L--------DAKNY--------HAWSHRQWVLRT--L 155 (320)
T ss_pred HHHcCchhhHHHHHHHHH-----------------HHH-----h--------CcccH--------HHHHHHHHHHHH--h
Confidence 222222 1333333321 111 1 01212 234677778888 7
Q ss_pred cCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCc-----ccchhhhHHHHHHHHhh--hc-----ccccccc
Q 000330 1402 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKE-----GAPISWQLKLLNSYLDR--AR-----SLPYLKL 1469 (1652)
Q Consensus 1402 g~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~K-----AeqMS~~~KtVsTYLDT--AW-----ILf~~~~ 1469 (1652)
|++++|.+.|+++|+.+|.| ..+|+.-. |+......+.+ .+++.+..+.|..--+- || +|...+.
T Consensus 156 ~~~~eeL~~~~~~I~~d~~N--~sAW~~R~-~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDVRN--NSAWNQRY-FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhHHHHHHHHHHHHHHCCCc--hhHHHHHH-HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc
Confidence 88999999999999999999 89998765 44332211211 23344443444222221 44 2222100
Q ss_pred cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHh
Q 000330 1470 LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLL 1549 (1652)
Q Consensus 1470 lAR~YI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll 1549 (1652)
+ . ++.+.+..+.++++......+--++-.+..+.. .........+-|+++ ...++....|+.+|.+|
T Consensus 233 -~--l---~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 233 -A--L---VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE------GLQPTAEFRDTVDTL-AEELSDSTLAQAVCSEL 299 (320)
T ss_pred -c--c---ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh------hhccchhhhhhhhcc-ccccccHHHHHHHHHHH
Confidence 0 0 122334445555555322111122222222211 011112244555555 66677889999999999
Q ss_pred hccCC
Q 000330 1550 NKDHN 1554 (1652)
Q Consensus 1550 ~k~~~ 1554 (1652)
.+++
T Consensus 300 -~~~d 303 (320)
T PLN02789 300 -EVAD 303 (320)
T ss_pred -HhhC
Confidence 5777
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00079 Score=78.00 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH------HHHhcCCCcccchhh
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL------MYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl------mYInsr~slddrl~~ 1085 (1652)
...+....-|+.-|..||++++=|..|+.+|+..+.-..+...|.+|+++.|+|-.++. ||.... + +
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-~------~ 208 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-Q------M 208 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-c------c
Confidence 44677888899999999999999999999999999999999999999999999999544 444432 1 3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1086 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1086 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
-.+|..+|.++.+.. ++. ...+.+|.--+.++|+|..|+.++..|+.
T Consensus 209 ta~a~~ll~~al~~D-~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 209 TAKARALLRQALALD-PAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cHHHHHHHHHHHhcC-Ccc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 378888998888877 565 88999999999999999999999999996
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00094 Score=75.38 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=116.8
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1064 (1652)
-|+..|.....|+-+|.-|-...++ +.|...|.+||.++|++..|+-.|.-+.+.++..+++..+|++|++ +|.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~-----~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~ 134 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGEN-----DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPA 134 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCh-----hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCC
Confidence 5777899999999999999998877 9999999999999999999999999999999999999999999964 443
Q ss_pred CHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 000330 1065 SYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1137 (1652)
Q Consensus 1065 NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~r 1137 (1652)
-+. +.+.-++.+ ..+.|...|.+..... ++. .-.++.|.++....|+|-.|-..+++
T Consensus 135 Y~~~s~t~eN~G~Cal~~g--------q~~~A~~~l~raL~~d-p~~-------~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 135 YGEPSDTLENLGLCALKAG--------QFDQAEEYLKRALELD-PQF-------PPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred CCCcchhhhhhHHHHhhcC--------CchhHHHHHHHHHHhC-cCC-------ChHHHHHHHHHHhcccchHHHHHHHH
Confidence 333 667777776 5678888887777766 676 78899999999999999999999988
Q ss_pred hcc
Q 000330 1138 LLI 1140 (1652)
Q Consensus 1138 LEq 1140 (1652)
..+
T Consensus 199 ~~~ 201 (250)
T COG3063 199 YQQ 201 (250)
T ss_pred HHh
Confidence 886
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=63.42 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1073 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1073 (1652)
.|+++.|+.+|.++++.+|++.++++.|+.+|+..+...++.++|+++++.+|++-.+|.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999766665543
|
... |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=73.35 Aligned_cols=262 Identities=15% Similarity=0.073 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1073 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1073 (1652)
+....+|-.|..+ |+|+.|..++.+||++ +-...+- +++.-|-.++ +++.+|.
T Consensus 200 ~~~~~La~~y~~~-----g~~e~A~~l~k~Al~~-------------l~k~~G~-----~hl~va~~l~----~~a~~y~ 252 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQ-----GRLEKAEPLCKQALRI-------------LEKTSGL-----KHLVVASMLN----ILALVYR 252 (508)
T ss_pred HHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH-------------HHHccCc-----cCHHHHHHHH----HHHHHHH
Confidence 5555566666655 4568888888888887 1111111 1111111111 7889999
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000330 1074 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1153 (1652)
Q Consensus 1074 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSL 1153 (1652)
++. ++.+.+..|.+|++++++..... ....--++.-|..+|+.+|+++.|-..+.+... .-+
T Consensus 253 ~~~-k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----I~~----- 314 (508)
T KOG1840|consen 253 SLG-KYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----IYE----- 314 (508)
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----HHH-----
Confidence 998 55555555666666665544433 233466788899999999999999986655442 100
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000330 1154 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1233 (1652)
Q Consensus 1154 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1233 (1652)
+ ++.+...+=.+-|+. .+.++...+...++..+ +.-|+..|....+...
T Consensus 315 -~--~~~~~~~~v~~~l~~---------~~~~~~~~~~~Eea~~l------------------~q~al~i~~~~~g~~~- 363 (508)
T KOG1840|consen 315 -K--LLGASHPEVAAQLSE---------LAAILQSMNEYEEAKKL------------------LQKALKIYLDAPGEDN- 363 (508)
T ss_pred -H--hhccChHHHHHHHHH---------HHHHHHHhcchhHHHHH------------------HHHHHHHHHhhccccc-
Confidence 0 122222221112222 23344444444444443 3333333332122111
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC-chhH-HHHHHHHhhcccCCccHHHHHHHH
Q 000330 1234 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--------PS-CLEL-VLMKARLQKHDFGDLSSVGFEEAL 1303 (1652)
Q Consensus 1234 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--------P~-d~eL-~L~AAyL~~K~m~~~A~svle~AL 1303 (1652)
-....++-|+-+.|...+..++|.++|.++++.- +. ...| .|..+|.+.++ ...|...|++++
T Consensus 364 ------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 364 ------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAK 436 (508)
T ss_pred ------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 1334566677777777889999999999999865 22 3445 88889988887 888999999999
Q ss_pred HhCCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1304 IKWPKGVP----GIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1304 ~~~PkNa~----g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
.+- +... .......-|+...-+.|+++.|++|...
T Consensus 437 ~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 437 DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 887 3322 4566666788888899999999999876
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.001 Score=82.00 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000330 1245 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1323 (1652)
Q Consensus 1245 fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1323 (1652)
=|......++..||.-+|+=+|+.+++..|++++.|++.-..+...- -..|+.+|+++|+++|+|.. +-+-|+-.
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVS 362 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVS 362 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHH
Confidence 34443344456888888988999999999999999998888766653 45788999999999999999 76677777
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCC---------------CCCCCCCcccccccccchhh
Q 000330 1324 ALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSP---------------ESTSTSDPEFSVSNRNQMDV 1387 (1652)
Q Consensus 1324 al~~en~d~ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~---------------es~s~~vSDfy~~~~~q~d~ 1387 (1652)
...++.-..|...+..|...-+.+.. ....--+.+..+.+.... +....+-+|++
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ--------- 433 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ--------- 433 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH---------
Confidence 88888888999999999877655544 111000000000000000 00112456655
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000330 1388 MFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1449 (1652)
Q Consensus 1388 ~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1449 (1652)
.-||.+||- .|.+++|...|+.||.-+|.+ .-.||.+-.-|.--. ..+|.+++
T Consensus 434 --~~LGVLy~l--s~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~---~s~EAIsA 486 (579)
T KOG1125|consen 434 --SGLGVLYNL--SGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGN---RSEEAISA 486 (579)
T ss_pred --hhhHHHHhc--chHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCc---ccHHHHHH
Confidence 566777776 999999999999999999999 999999998877533 23444555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0017 Score=66.78 Aligned_cols=117 Identities=25% Similarity=0.204 Sum_probs=88.6
Q ss_pred hcCHHHHHHHHHHHHHhCCCch--hH-HH--HHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000330 1256 LNGLECSMNLLEKYIKLYPSCL--EL-VL--MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1330 (1652)
Q Consensus 1256 LEDse~A~~LfdklLk~~P~d~--eL-~L--~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1330 (1652)
.++...+..+++.+++.+|... .+ .| ...++..++ .++|...|+.++...|+. .+..-+++.|....+..|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCH
Confidence 4588999999999999999992 22 33 334444444 889999999999998666 44555788899999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000330 1331 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1410 (1652)
Q Consensus 1331 d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1410 (1652)
++|+.++.. .. +..+.+. +..++||+|.. +|++++|..+
T Consensus 102 d~Al~~L~~------------------~~----------~~~~~~~-----------~~~~~Gdi~~~--~g~~~~A~~~ 140 (145)
T PF09976_consen 102 DEALATLQQ------------------IP----------DEAFKAL-----------AAELLGDIYLA--QGDYDEARAA 140 (145)
T ss_pred HHHHHHHHh------------------cc----------CcchHHH-----------HHHHHHHHHHH--CCCHHHHHHH
Confidence 998888733 00 0011122 23789999999 9999999999
Q ss_pred HHHHH
Q 000330 1411 IDAAL 1415 (1652)
Q Consensus 1411 YDKAL 1415 (1652)
|++||
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99996
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=62.75 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH---
Q 000330 993 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY--- 1066 (1652)
Q Consensus 993 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY--- 1066 (1652)
.+.++..|..++.+ |+++.|...|..+++.+|++ +.+++.++.+|...+...++.++|+.+++..|++.
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKA-----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 35677788888776 45799999999999999987 68999999999999999999999999999998852
Q ss_pred ----HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCC
Q 000330 1067 ----ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1102 (1652)
Q Consensus 1067 ----~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~ 1102 (1652)
.++.+|...+ .+++|+..|.++...+|.
T Consensus 77 ~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 77 DALLKLGMSLQELG--------DKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHHhC--------ChHHHHHHHHHHHHHCcC
Confidence 1677888877 889999999999998843
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=56.31 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000330 1034 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1109 (1652)
Q Consensus 1034 aWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1109 (1652)
+|+.++.+|...+...++...|+++++..|.+.. ++.+|...+ .+++|+..|.+..... +..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~----- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDN----- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-Ccc-----
Confidence 6888999999999999999999999999998744 667777776 8899999998888877 443
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1110 CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1110 ~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.+++..+..++...|++++|+..+.+...
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 48899999999999999999997777653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0032 Score=75.65 Aligned_cols=291 Identities=15% Similarity=0.098 Sum_probs=191.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1088 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1088 (1652)
.+...|..||..|..|++..|.+++.|.--+..|+..+.-+++.--.++.|++.|+-.+ -..++..|-.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k-----------~~~r~~~c~~ 128 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK-----------GQLREGQCHL 128 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------cccchhhhhh
Confidence 34567999999999999999999999999999988888777777777888888876554 1223446666
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh
Q 000330 1089 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1168 (1652)
Q Consensus 1089 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A 1168 (1652)
|+..+....... .+. +.+..-+|+.++.++-+ ..+. ..
T Consensus 129 a~~~~i~A~~~~-~~~-------------------~~~~~anal~~~~~~~~----s~s~--------------~p---- 166 (486)
T KOG0550|consen 129 ALSDLIEAEEKL-KSK-------------------QAYKAANALPTLEKLAP----SHSR--------------EP---- 166 (486)
T ss_pred hhHHHHHHHHHh-hhh-------------------hhhHHhhhhhhhhcccc----cccC--------------Cc----
Confidence 666665544433 221 11122334443333332 1111 01
Q ss_pred hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000330 1169 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1248 (1652)
Q Consensus 1169 WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1248 (1652)
-...++.|-...|+..+...+|..+ ...+++.++.++.++.--
T Consensus 167 -----ac~~a~~lka~cl~~~~~~~~a~~e---a~~ilkld~~n~~al~vr----------------------------- 209 (486)
T KOG0550|consen 167 -----ACFKAKLLKAECLAFLGDYDEAQSE---AIDILKLDATNAEALYVR----------------------------- 209 (486)
T ss_pred -----hhhHHHHhhhhhhhhcccchhHHHH---HHHHHhcccchhHHHHhc-----------------------------
Confidence 1233455566677778888888888 888899999999888532
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhh----------cccCCccHHHHHHHHHhCCCCCc-hHH
Q 000330 1249 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQK----------HDFGDLSSVGFEEALIKWPKGVP-GIQ 1314 (1652)
Q Consensus 1249 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~----------K~m~~~A~svle~AL~~~PkNa~-g~~ 1314 (1652)
.+++.-+.+.+.++.-|.+.|.+.|.+-+. .+..-.|+. ++.-.+|-..|.+||.++|+|.. ...
T Consensus 210 -g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 210 -GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred -ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 123333335666677777777777777666 111111211 11133566889999999999998 666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH
Q 000330 1315 CIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL 1394 (1652)
Q Consensus 1315 caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD 1394 (1652)
|-|++-.- -++-++..+|+.-|.. |+. + .+-| +-++|--
T Consensus 289 lY~nra~v-~~rLgrl~eaisdc~~--------------Al~--------i---------D~sy---------ikall~r 327 (486)
T KOG0550|consen 289 LYGNRALV-NIRLGRLREAISDCNE--------------ALK--------I---------DSSY---------IKALLRR 327 (486)
T ss_pred HHHHhHhh-hcccCCchhhhhhhhh--------------hhh--------c---------CHHH---------HHHHHHH
Confidence 66665443 4567788888888854 221 1 1112 1277777
Q ss_pred HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000330 1395 SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1431 (1652)
Q Consensus 1395 ~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1431 (1652)
+.+.++.++++||..-|++|++..-+-.....|++=.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 7888889999999999999999888755577777644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0074 Score=74.98 Aligned_cols=244 Identities=20% Similarity=0.112 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhh-ccchHHHhh
Q 000330 1111 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYR-KLPDAVLQL 1188 (1652)
Q Consensus 1111 iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYr-vLPGd~y~q 1188 (1652)
.+-++..++..|..+|+|++|+. +...|+. . -|..|- ..| +++=. .-.|.+|+.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~----l~k~Al~----------~---------l~k~~G-~~hl~va~~l~~~a~~y~~ 253 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEP----LCKQALR----------I---------LEKTSG-LKHLVVASMLNILALVYRS 253 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH----HHHHHHH----------H---------HHHccC-ccCHHHHHHHHHHHHHHHH
Confidence 38888889999999999999999 3321111 0 000111 111 11111 125666777
Q ss_pred hhhhhhhhccCCCCcccc--------hhhHHHHHHHHHHHHHHHhhhcCCcchhhhh-------hhc----hhhHhHHHH
Q 000330 1189 LECEKELFAIDWPPVQLE--------DDEKQRAIKLIEMAVNSVELYSNGESLEKET-------NLR----SAHCFAVNH 1249 (1652)
Q Consensus 1189 ~e~~KEAf~I~W~y~~vl--------k~EPdnalAL~smA~dYY~~~~ndesla~~~-------~~k----t~~~fKLN~ 1249 (1652)
.++.+||..+ |...+ ++.|.-+..+.++|+-||+. |+-.-+... .++ .....+..+
T Consensus 254 ~~k~~eAv~l---y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 254 LGKYDEAVNL---YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred hccHHHHHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 7776666666 55554 45889999999999888874 433322222 000 111111111
Q ss_pred ---HHHHHHhcCHHHHHHHHHHHHHhCC---Cchh--H-----HHHHHHHhhcccCCccHHHHHHHHHhC----CCCCch
Q 000330 1250 ---IWCMAVLNGLECSMNLLEKYIKLYP---SCLE--L-----VLMKARLQKHDFGDLSSVGFEEALIKW----PKGVPG 1312 (1652)
Q Consensus 1250 ---IR~lI~LEDse~A~~LfdklLk~~P---~d~e--L-----~L~AAyL~~K~m~~~A~svle~AL~~~----PkNa~g 1312 (1652)
...+...++.++|..|+.++++.+- .+.+ + -|...|+.+.+ ..+|...|++|+++. =+...+
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChh
Confidence 1111113366677777666666542 2222 2 33334444443 566666677776665 222223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHH
Q 000330 1313 IQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1392 (1652)
Q Consensus 1313 ~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~L 1392 (1652)
..-.-+||.....+.+++..|-++..+ +.+++ +.-.+ ..-|++|.|.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~--------------~~~i~-~~~g~------------------~~~~~~~~~~ 454 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEE--------------AKDIM-KLCGP------------------DHPDVTYTYL 454 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHH--------------HHHHH-HHhCC------------------CCCchHHHHH
Confidence 222333455544555566655555533 44444 22111 1225677999
Q ss_pred HH--HHHHhhhcCHHHHHHHHHHHHhhcc
Q 000330 1393 NL--SLHRLLQNDWNEARLAIDAALKAAA 1419 (1652)
Q Consensus 1393 GD--~L~q~Lqg~~~EAfaAYDKALkanp 1419 (1652)
|+ .|-. +|++++|+..-++++.|..
T Consensus 455 nL~~~Y~~--~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 455 NLAALYRA--QGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHH--cccHHHHHHHHHHHHHHHH
Confidence 99 4555 9999999999999997765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0034 Score=77.53 Aligned_cols=226 Identities=15% Similarity=0.155 Sum_probs=152.8
Q ss_pred hhhhc-cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000330 985 KLKQV-ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1063 (1652)
Q Consensus 985 ~le~~-~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1063 (1652)
+|... |...-.|+..+.-|++-+.+ ..|...|++|-.+||+=..+|..|++.|...++-+.+...|.+|.++=|
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~-----seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKY-----SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCc-----HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 34333 56667788888888877544 8888888888888888888888888888888887888888888888888
Q ss_pred CCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH-HHhcCHHHHHHHHHhh
Q 000330 1064 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF-CMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1064 ~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY-~qSGnydKAI~ti~rL 1138 (1652)
+.+. ++.-|-... .+..|-.+|.++.+..|.|. +.+--+-+. -..+.|.+|+. +
T Consensus 378 G~hlP~LYlgmey~~t~--------n~kLAe~Ff~~A~ai~P~Dp---------lv~~Elgvvay~~~~y~~A~~----~ 436 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTN--------NLKLAEKFFKQALAIAPSDP---------LVLHELGVVAYTYEEYPEALK----Y 436 (611)
T ss_pred CCcchHHHHHHHHHHhc--------cHHHHHHHHHHHHhcCCCcc---------hhhhhhhheeehHhhhHHHHH----H
Confidence 8776 555555555 67888888888888775553 222223333 33667888887 5
Q ss_pred cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHH
Q 000330 1139 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1218 (1652)
Q Consensus 1139 Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~s 1218 (1652)
++.++.-. . ........|-.- ...+|..|-..++..||+.. +++.+...|.++-.+.+
T Consensus 437 f~~~l~~i----------k---~~~~e~~~w~p~------~~NLGH~~Rkl~~~~eAI~~---~q~aL~l~~k~~~~~as 494 (611)
T KOG1173|consen 437 FQKALEVI----------K---SVLNEKIFWEPT------LNNLGHAYRKLNKYEEAIDY---YQKALLLSPKDASTHAS 494 (611)
T ss_pred HHHHHHHh----------h---hccccccchhHH------HHhHHHHHHHHhhHHHHHHH---HHHHHHcCCCchhHHHH
Confidence 54333111 0 112222244322 22356666666777788777 77777777777666655
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000330 1219 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1288 (1652)
Q Consensus 1219 mA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1288 (1652)
.| -++..++.++.|++-|.+.|.+.|.|.-+ .|....|+.
T Consensus 495 ig------------------------------~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 495 IG------------------------------YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HH------------------------------HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 32 33445778999999999999999999877 555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.001 Score=76.13 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000330 1248 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1325 (1652)
Q Consensus 1248 N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1325 (1652)
.+|+++-..++.+.|+.+|.++++..+.+.+|++..|.|+.... +..|+.+||.++..-|++.. .|+.||.+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~ 81 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHH
Confidence 44666555778999999999999877788999999999987743 33489999999999999999 9999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH--HHHHhhhcC
Q 000330 1326 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQND 1403 (1652)
Q Consensus 1326 ~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD--~L~q~Lqg~ 1403 (1652)
..++.+.|..|.++++..++.... + ..||+ +-|+...|+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~-----------------------------------~----~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQ-----------------------------------S----KKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHH-----------------------------------C----HHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhH-----------------------------------H----HHHHHHHHHHHHHcCC
Confidence 999999999999773322111110 1 33444 556667899
Q ss_pred HHHHHHHHHHHHhhccC-CcHHHHHHHH
Q 000330 1404 WNEARLAIDAALKAAAS-EHFKHCVREH 1430 (1652)
Q Consensus 1404 ~~EAfaAYDKALkanp~-N~~i~cLNNY 1430 (1652)
++.....++++..+-|. +.+...++.|
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999985 5455555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0028 Score=81.23 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000330 1258 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1336 (1652)
Q Consensus 1258 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~L 1336 (1652)
-..+++.=+..++.-||.+++.....+++ +..+-.++|...|+.+++..|++.. +|.-++....+.+.+++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHH
Confidence 34455555566778888888884444443 3333378888888888888888888 888888888888888888888
Q ss_pred HHHHH------------Hhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000330 1337 MDRWF------------HSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1403 (1652)
Q Consensus 1337 c~~ff------------~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~ 1403 (1652)
+++.+ ++++-.+. +.++|.+++++...+.+ |+ .. ++++.+.--.-.|+
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p---------~~-----~~-----~~~~~a~~l~~~G~ 203 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP---------EF-----EN-----GYVGWAQSLTRRGA 203 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---------Cc-----HH-----HHHHHHHHHHHcCC
Confidence 88833 33333333 88888888887754421 10 11 55665444333799
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh--------c--CCCCCCcccchhhhHHHHHHHHhh
Q 000330 1404 WNEARLAIDAALKAAASEHFKHCVREHAMLLL--------I--NESEPKEGAPISWQLKLLNSYLDR 1460 (1652)
Q Consensus 1404 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS--------~--e~~dL~KAeqMS~~~KtVsTYLDT 1460 (1652)
.++|.++|++|+....+. ..-++||+.=|. + ++.--.+..++-.+.++|--|=|+
T Consensus 204 ~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 204 LWRARDVLQAGLDAIGDG--ARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 999999999999999988 566666654332 2 333344445555545566555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0026 Score=77.46 Aligned_cols=134 Identities=15% Similarity=0.049 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1073 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1073 (1652)
..|--.|..++-- +.+|.|+..|.-.+...|+|+-.|-....++...++..++.+++++|+.+.|++.+||.+|.
T Consensus 307 aa~YG~A~~~~~~-----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLA-----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHh-----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4555556555544 44699999999999999999999999999999999999999999999999999999666555
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000330 1074 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1146 (1652)
Q Consensus 1074 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~ 1146 (1652)
+--...+ .+.+||.+|-+..... |+. -+.|.+|.+-|..+|+..+|.... -|.-+..|.
T Consensus 382 ~all~~g----~~~eai~~L~~~~~~~-p~d-------p~~w~~LAqay~~~g~~~~a~~A~--AE~~~~~G~ 440 (484)
T COG4783 382 QALLKGG----KPQEAIRILNRYLFND-PED-------PNGWDLLAQAYAELGNRAEALLAR--AEGYALAGR 440 (484)
T ss_pred HHHHhcC----ChHHHHHHHHHHhhcC-CCC-------chHHHHHHHHHHHhCchHHHHHHH--HHHHHhCCC
Confidence 4332222 6789999998888888 454 799999999999999998887744 333335554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0037 Score=71.64 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000330 992 SNEQCVEMALLI-LNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1067 (1652)
Q Consensus 992 d~qlWLelAl~~-Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1067 (1652)
+...|...|+.+ +.. ++|+.|+..|...++.+|++ +.+||.++.+|+..+...++...|+++|+..|++.+
T Consensus 141 ~e~~~Y~~A~~l~~~~-----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDK-----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 568888888876 444 56799999999999999998 689999999999999999999999999999998755
Q ss_pred -------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000330 1068 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1068 -------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1103 (1652)
++..|...+ .+++|+.+|++..+.+ |+
T Consensus 216 ~~dAl~klg~~~~~~g--------~~~~A~~~~~~vi~~y-P~ 249 (263)
T PRK10803 216 AADAMFKVGVIMQDKG--------DTAKAKAVYQQVIKKY-PG 249 (263)
T ss_pred hhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-cC
Confidence 556677777 8899999999999999 45
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.023 Score=72.48 Aligned_cols=328 Identities=17% Similarity=0.091 Sum_probs=173.8
Q ss_pred cceecCCccccccccccchhhhhhhhhccccH--HHHHHHHHHHhcccc-cc---hhhHHHHHHHHHHHHHhCCCCHHHH
Q 000330 962 RIECIGSWNRQSSFFRSRNGVLNKLKQVELSN--EQCVEMALLILNQDA-NK---LEGMKKALSLLSRALEADPTSEILW 1035 (1652)
Q Consensus 962 ri~~~~~~~~~~rYF~~~~d~i~~le~~~~d~--qlWLelAl~~Lnq~~-n~---~g~ydAALdLLsrALEINPtSaeaW 1035 (1652)
.++-++.+.+-.-|=+.--++. ..+.+-..- ++.+-.|++-..... ++ .....+++..|.+|++.+|+++-+.
T Consensus 403 c~e~l~~~eegldYA~kai~~~-~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLL-GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 4555544444444544222222 233333333 444444444444443 33 3447899999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc---ch-
Q 000330 1036 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE---MH- 1106 (1652)
Q Consensus 1036 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr---~~- 1106 (1652)
|+++.-|.-+.+-..+.++++.|.++++.... |++..--++ .|..|+.+......-+ +++ ++
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k--------r~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK--------RLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 99999998888888899999999999877666 555555566 4566666665544444 231 00
Q ss_pred ---h------hhhhHHHHHHHHHHHHHhcCHHHHHHHH------HhhcccccCCCCcccchHHHHHHhhccCCcchh---
Q 000330 1107 ---A------SACILDLFLQMLQCFCMSGNTEKAIQRI------SRLLIPATGSNDRHSLFLSDILTCLTISDKLIF--- 1168 (1652)
Q Consensus 1107 ---~------Sa~iLDILL~LvqLY~qSGnydKAI~ti------~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A--- 1168 (1652)
. ---.+|....++.|.-...-++.++..+ .++- .+...... .++.++-..-+-....+.+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~-la~~q~~~-a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH-LALSQPTD-AISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc-cCcccccc-cchhhHHHHHHHHhhhhhcccc
Confidence 0 0134677777777666333333332211 1111 01111111 1111111111111111111
Q ss_pred ---------------hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000330 1169 ---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1233 (1652)
Q Consensus 1169 ---------------WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1233 (1652)
|+.- ..--.+-++.++-.+-.++++.. .....+.+|.-+......| ..+.. .++..-
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~---~~lwllaa~~~~~~~~~~~a~~C---L~Ea~~~~~l~~~~~~~~G-~~~~~-~~~~~E 702 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLL---QKLWLLAADLFLLSGNDDEARSC---LLEASKIDPLSASVYYLRG-LLLEV-KGQLEE 702 (799)
T ss_pred cccCcccccCCCCchHHHH---HHHHHHHHHHHHhcCCchHHHHH---HHHHHhcchhhHHHHHHhh-HHHHH-HHhhHH
Confidence 2111 11111234445555555555443 3444444555555554433 22222 222221
Q ss_pred hhhhh--------hchhhHhHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHH
Q 000330 1234 EKETN--------LRSAHCFAVNHIWCMAVLN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEA 1302 (1652)
Q Consensus 1234 a~~~~--------~kt~~~fKLN~IR~lI~LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~A 1302 (1652)
+.+.. ..+...+.+ ..++...| ..-+.+.++.-+++..|.|.+.|.+..-+.++.+ ...|..-|+.|
T Consensus 703 A~~af~~Al~ldP~hv~s~~Al--a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTAL--AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHH--HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 11110 011111111 12222233 4555566999999999999999999999877775 66888999999
Q ss_pred HHhCCCCCc
Q 000330 1303 LIKWPKGVP 1311 (1652)
Q Consensus 1303 L~~~PkNa~ 1311 (1652)
++.++.++-
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999998875
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0081 Score=73.43 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=102.6
Q ss_pred cccH---HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhC----C-C----CchHH
Q 000330 990 ELSN---EQCVEMALLILNQDA--NKLEGMKKALSLLSRAL---EADPTSEILWITYLLIFYSN----T-N----SVGKD 1052 (1652)
Q Consensus 990 ~~d~---qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrAL---EINPtSaeaWy~yl~lY~~~----~-~----~eea~ 1052 (1652)
|.+. +.||..++.+--... ...+..++|+.+|.+|+ ++||.-+.+|..++..+..+ . . -.++.
T Consensus 245 ~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 245 KQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred CCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4555 778777644444332 34567899999999999 99999999988887776644 1 1 23477
Q ss_pred HHHHHHHhhCCCCHH-HHHHH---HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH
Q 000330 1053 DMFSYSVKHNEGSYA-LWLMY---INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 1128 (1652)
Q Consensus 1053 emlekAVelnP~NY~-LwlmY---Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny 1128 (1652)
+.-++||+++|.+-. +|.+= ...+ .++.|+..|+++..-+ |+- -+++++..-+..+.|+.
T Consensus 325 ~~A~rAveld~~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~-Pn~-------A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 325 ELLDYVSDITTVDGKILAIMGLITGLSG--------QAKVSHILFEQAKIHS-TDI-------ASLYYYRALVHFHNEKI 388 (458)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcC-Ccc-------HHHHHHHHHHHHHcCCH
Confidence 899999999999888 44332 2333 4689999999888888 565 89999999999999999
Q ss_pred HHHHHHHHhhc
Q 000330 1129 EKAIQRISRLL 1139 (1652)
Q Consensus 1129 dKAI~ti~rLE 1139 (1652)
+.|+..+++-.
T Consensus 389 ~~a~~~i~~al 399 (458)
T PRK11906 389 EEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHh
Confidence 99999888844
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00075 Score=63.14 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000330 1011 LEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1084 (1652)
.++|+.|+.+|.++++.+|+ +..+|+.++..|++.++-..+.+.+++ .+++|.+.. ++..|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-------- 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-------- 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC--------
Confidence 36799999999999999996 578899999999999999999999999 788887755 667788888
Q ss_pred hHHHHHHHHHH
Q 000330 1085 AYDAALSVLCR 1095 (1652)
Q Consensus 1085 ~YdkAI~aLe~ 1095 (1652)
.|++||.+|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999976
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0019 Score=58.13 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL 1070 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl 1070 (1652)
++++.|+.++.++++++|+++.+|+.++.+|...+...++.+.|+++++++|++-..-.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56899999999999999999999999999999999999999999999999998877433
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.038 Score=70.96 Aligned_cols=345 Identities=11% Similarity=0.019 Sum_probs=175.7
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHhhC
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-------SVGKDDMFSYSVKHN 1062 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-------~eea~emlekAVeln 1062 (1652)
|+...+|++++...+.-... +....+..+|.+||- |-+++.+|.+|+.|++..++ .......|++|++.-
T Consensus 144 pl~~~lWl~Wl~d~~~mt~s--~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 144 PLPPHLWLEWLKDELSMTQS--EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred CCChHHHHHHHHHHHhhccC--cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 66679999999877766543 666889999999985 55899999999999987665 223568899998776
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHH----HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000330 1063 EGSYA----LWLMYINSRTPLNHRLDAYDA----ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1134 (1652)
Q Consensus 1063 P~NY~----LwlmYInsr~slddrl~~Ydk----AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1134 (1652)
-.-+. +|.||+... ..+.|.. .+.++....... -|- +.-+|-+.-+.--=+-..+..++++|.++
T Consensus 221 g~~~t~G~~~we~~~E~e-----~~~l~n~~~~qv~a~~~~el~~~-~D~-~~~~~~~~~~sk~h~~~~~~~~~~~a~~~ 293 (881)
T KOG0128|consen 221 GSHITEGAAIWEMYREFE-----VTYLCNVEQRQVIALFVRELKQP-LDE-DTRGWDLSEQSKAHVYDVETKKLDDALKN 293 (881)
T ss_pred hhhhcccHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhcc-chh-hhhHHHHHHHHhcchHHHHhccHHHHHHH
Confidence 33333 999999987 2223333 444444433332 231 11111111111112233456788888888
Q ss_pred HHhhcccccCCCCcccchHHHHHHhhccCCcchh-----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCC----C
Q 000330 1135 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWP----P 1202 (1652)
Q Consensus 1135 i~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~----y 1202 (1652)
+..++... .... +.--.+.+.|+..-|-|+. -..-+| ..++..-++.|+...=-...-|.++=. +
T Consensus 294 l~~~~~~~--e~~~-q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~ 370 (881)
T KOG0128|consen 294 LAKILFKF--ERLV-QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH 370 (881)
T ss_pred HHHHHHHH--HHHh-hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence 77776411 1111 2222333333333333222 222222 222222233332221111111111000 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhcCCcch-----------------hhhhhhchhhHhHHHHHHHHHH-hcCHHHHHH
Q 000330 1203 VQLEDDEKQRAIKLIEMAVNSVELYSNGESL-----------------EKETNLRSAHCFAVNHIWCMAV-LNGLECSMN 1264 (1652)
Q Consensus 1203 ~~vlk~EPdnalAL~smA~dYY~~~~ndesl-----------------a~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~ 1264 (1652)
...+... -....|++-|.=..+ -+.++. +......--.||++-....|.. -+.++.|..
T Consensus 371 ~ra~R~c-p~tgdL~~rallAle--R~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~ 447 (881)
T KOG0128|consen 371 PRAVRSC-PWTGDLWKRALLALE--RNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWE 447 (881)
T ss_pred chhhcCC-chHHHHHHHHHHHHH--hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence 1111111 111222221100000 000000 0000001113344433444433 337778888
Q ss_pred HHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 000330 1265 LLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC-IWNQYVEYALQNGRHDFAAELMDRW 1340 (1652)
Q Consensus 1265 LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~c-aW~QLIq~al~~en~d~ai~Lc~~f 1340 (1652)
+|...+.. .+.+..+ +..--++...+..+.++.+|..++. ...+-.+ +|.+++++...-++...+..+.++
T Consensus 448 eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt----y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~- 522 (881)
T KOG0128|consen 448 ELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT----YGGGSIAGKWLEAINLEREYGDGPSARKVLRK- 522 (881)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc----CCcchHHHHHHHHHhHHHHhCCchhHHHHHHH-
Confidence 88887765 5555555 3333444444447888888877643 4444455 999999999999999998875544
Q ss_pred HHhhhhccc-ccccchhhhc
Q 000330 1341 FHSVWKVQY-SQVEISDPLV 1359 (1652)
Q Consensus 1341 f~gia~~Q~-~~deALDaLr 1359 (1652)
+|.+. ..+.+.+++.
T Consensus 523 ----ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 523 ----AYSQVVDPEDALEVLE 538 (881)
T ss_pred ----HHhcCcCchhHHHHHH
Confidence 55555 3333444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.033 Score=67.50 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=90.8
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHhCCCC-chHHHHHHHHHhhCCCCH
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD-PTSEILWITYL-LIFYSNTNS-VGKDDMFSYSVKHNEGSY 1066 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-PtSaeaWy~yl-~lY~~~~~~-eea~emlekAVelnP~NY 1066 (1652)
++-+++=|..|-.+|.++ ++..|..+|.--=.-| .+.+.+-..|. ..|.+.+.+ ..++.|-..|+..+-.|-
T Consensus 416 ~la~dlei~ka~~~lk~~-----d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNG-----DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred hhhhhhhhhHHHHHHhcc-----CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 445567777787888774 4688888876544333 34444444454 444444433 236677777775553332
Q ss_pred HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000330 1067 ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1146 (1652)
Q Consensus 1067 ~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~ 1146 (1652)
. ...|.+...=- --.|++|.++|-++.... +-|++.|+-+---+-..|+.+.|+.-+.+|-.--++
T Consensus 491 ~---a~~nkgn~~f~-ngd~dka~~~ykeal~nd--------asc~ealfniglt~e~~~~ldeald~f~klh~il~n-- 556 (840)
T KOG2003|consen 491 A---ALTNKGNIAFA-NGDLDKAAEFYKEALNND--------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-- 556 (840)
T ss_pred H---HhhcCCceeee-cCcHHHHHHHHHHHHcCc--------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--
Confidence 2 12233321110 015799999996665432 234777777777888999999999966655431122
Q ss_pred CcccchHHHHHHhhccCCcchh
Q 000330 1147 DRHSLFLSDILTCLTISDKLIF 1168 (1652)
Q Consensus 1147 sE~~lSLsKi~~YLt~sDR~~A 1168 (1652)
+- +...+..-+|+.+.|...|
T Consensus 557 n~-evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 557 NA-EVLVQIANIYELLEDPAQA 577 (840)
T ss_pred hH-HHHHHHHHHHHHhhCHHHH
Confidence 22 3444444455555555433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0091 Score=56.92 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000330 1032 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1032 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1104 (1652)
+.++|..+..+...++-.++.+.|+++++..|++. .++..|...+ .|+.|+..|..+...++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999999998762 2777888888 89999999999888763221
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1105 MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1105 ~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
...++++.+..+|...|++++|+..+.++..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 74 -----KAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred -----cccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 2267899999999999999999999988875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.012 Score=62.09 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=79.4
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1066 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1066 (1652)
+.....+..+|..+... |+++.|+..|.++++++|+. +.+|+.++.+|...+..+.+..+|++|++..|.+.
T Consensus 32 ~~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 32 AKEAFVYYRDGMSAQAD-----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred hhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 34445566666666555 56799999999999998874 57999999999999999999999999999999887
Q ss_pred H----HHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC
Q 000330 1067 A----LWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS 1100 (1652)
Q Consensus 1067 ~----LwlmYInsr~------slddrl~~YdkAI~aLe~las~~ 1100 (1652)
. ++.+|...+. .+...+..|++|++++.+..+..
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 7 5566665541 22333344677777777766655
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=61.33 Aligned_cols=109 Identities=9% Similarity=-0.023 Sum_probs=82.5
Q ss_pred hhcccc--HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000330 987 KQVELS--NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKH 1061 (1652)
Q Consensus 987 e~~~~d--~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVel 1061 (1652)
.+...+ ...|+.++..+... |+++.|+..|.+|+++.|+. +.+|+.++.+|...+..+++.++|++|++.
T Consensus 27 ~~~~~~~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 27 PTTSGEKEAFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred cCCchhHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444 47778887777655 45799999999999998773 459999999999999999999999999999
Q ss_pred CCCCHH----HHHHHHhcC------CCcccchhhHHHHHHHHHHhhhcC
Q 000330 1062 NEGSYA----LWLMYINSR------TPLNHRLDAYDAALSVLCRCASAS 1100 (1652)
Q Consensus 1062 nP~NY~----LwlmYInsr------~slddrl~~YdkAI~aLe~las~~ 1100 (1652)
.|.+.. ++.+|.+.+ ..+...+..|++|+.+|++.....
T Consensus 102 ~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 102 NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 988766 455555322 123333445778888888887777
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0057 Score=71.26 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=78.6
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHH
Q 000330 1243 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1320 (1652)
Q Consensus 1243 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QL 1320 (1652)
..+|.. .--+...++.++|+..|.+++++.|+++-+ .=.++|++.. +-+.|+..++.||.++|.... +|
T Consensus 82 E~LK~e-GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~ysk----ay--- 152 (304)
T KOG0553|consen 82 ESLKNE-GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSK----AY--- 152 (304)
T ss_pred HHHHHH-HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHH----HH---
Confidence 334443 333344568889999999999999999888 5566666666 488888888999999888777 54
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhh
Q 000330 1321 VEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLL 1400 (1652)
Q Consensus 1321 Iq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~L 1400 (1652)
+=||.+|+-
T Consensus 153 ---------------------------------------------------------------------~RLG~A~~~-- 161 (304)
T KOG0553|consen 153 ---------------------------------------------------------------------GRLGLAYLA-- 161 (304)
T ss_pred ---------------------------------------------------------------------HHHHHHHHc--
Confidence 557888888
Q ss_pred hcCHHHHHHHHHHHHhhccCC
Q 000330 1401 QNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1401 qg~~~EAfaAYDKALkanp~N 1421 (1652)
.|+++||..||-|||..+|+|
T Consensus 162 ~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc
Confidence 999999999999999999999
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0084 Score=72.32 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1087 (1652)
++-.+|+.+|..+-.+=|+++.++..|+.+|-+-+.++.+.+++-....+-|.|.. |+.+||... -.+
T Consensus 572 ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq--------f~e 643 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ--------FSE 643 (840)
T ss_pred hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH--------HHH
Confidence 34478999999999999999999999999999999888888888888889999875 888999988 679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1139 (1652)
+||..||+++--. |.. .-+-+..+-|+.++|||++|+.++..+-
T Consensus 644 kai~y~ekaaliq-p~~-------~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 644 KAINYFEKAALIQ-PNQ-------SKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHhcC-ccH-------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999987776 553 4556677889999999999999776555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0042 Score=73.48 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=72.0
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1064 (1652)
-|+..|.+.+.|+.+|.-++.. |+++.|+..|.+||+++|+.+.+|+.++.+|+..+...++...|++|++++|+
T Consensus 28 Al~~~P~~~~a~~~~a~~~~~~-----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 28 AIDLDPNNAELYADRAQANIKL-----GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 4556688889999999988876 56799999999999999999999999999999999999999999999999999
Q ss_pred CHHH
Q 000330 1065 SYAL 1068 (1652)
Q Consensus 1065 NY~L 1068 (1652)
+..+
T Consensus 103 ~~~~ 106 (356)
T PLN03088 103 DSRF 106 (356)
T ss_pred CHHH
Confidence 9884
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0056 Score=74.03 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1069 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1069 (1652)
+.++-+|.-++..+. -..|..++.++|..+|.+++++...+.++.++++.+.|....++||++.|+++. |+
T Consensus 201 ev~~~LA~v~l~~~~-----E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 201 EVAVLLARVYLLMNE-----EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred cHHHHHHHHHHhcCc-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 456667776665443 278999999999999999999999999999999999999999999999999997 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000330 1070 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1099 (1652)
Q Consensus 1070 lmYInsr~slddrl~~YdkAI~aLe~las~ 1099 (1652)
..|+..+ .|+.|+.+|..+.-.
T Consensus 276 ~~Yi~~~--------d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 276 ECYIQLG--------DFENALLALNSCPML 297 (395)
T ss_pred HHHHhcC--------CHHHHHHHHhcCcCC
Confidence 8999999 999999999776544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.019 Score=59.06 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCccc
Q 000330 1012 EGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNH 1081 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~sldd 1081 (1652)
++.+.+-..+...++-+|++ .-+++.++..++..+.-+++...|+.+++..|+... |+.+|+..+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~----- 99 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG----- 99 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 44577777899999999999 778888999999999999999999999999877643 788899999
Q ss_pred chhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000330 1082 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1136 (1652)
Q Consensus 1082 rl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~ 1136 (1652)
.|++|+..|... ... + +--.++..+-++|...|++++|+..+.
T Consensus 100 ---~~d~Al~~L~~~-~~~-~-------~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 100 ---QYDEALATLQQI-PDE-A-------FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred ---CHHHHHHHHHhc-cCc-c-------hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999552 111 1 114467789999999999999999553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.29 Score=56.23 Aligned_cols=242 Identities=15% Similarity=0.104 Sum_probs=144.9
Q ss_pred cHHHHHHHHHHHhccc--c-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000330 992 SNEQCVEMALLILNQD--A-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 992 d~qlWLelAl~~Lnq~--~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1064 (1652)
+.+..|+.|.+.+... . ....+|+.|.++|.+| +..|...+.-.++-++|.+|.+..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~-- 65 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCY-- 65 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHH--
Confidence 3466788899998854 1 1346889988888776 777777788888888999886543
Q ss_pred CHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000330 1065 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1144 (1652)
Q Consensus 1065 NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~ 1144 (1652)
.+.+..+ +....|..|..+|.+. . ++ ...+.+...+++|...|+...|-..+.+|-.
T Consensus 66 --------~~~~~~~-~Aa~~~~~Aa~~~k~~---~-~~------~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~---- 122 (282)
T PF14938_consen 66 --------EKLGDKF-EAAKAYEEAANCYKKG---D-PD------EAIECYEKAIEIYREAGRFSQAAKCLKELAE---- 122 (282)
T ss_dssp --------HHTT-HH-HHHHHHHHHHHHHHHT---T-HH------HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH----
T ss_pred --------HHcCCHH-HHHHHHHHHHHHHHhh---C-HH------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----
Confidence 3333100 0111344444444222 1 11 2356777778888888888877764433321
Q ss_pred CCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHH
Q 000330 1145 SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSV 1224 (1652)
Q Consensus 1145 g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY 1224 (1652)
+ |...+ .+++.|+.++..|+++|
T Consensus 123 -------------~-------------------ye~~~-------------------------~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 123 -------------I-------------------YEEQL-------------------------GDYEKAIEYYQKAAELY 145 (282)
T ss_dssp -------------H-------------------HCCTT---------------------------HHHHHHHHHHHHHHH
T ss_pred -------------H-------------------HHHHc-------------------------CCHHHHHHHHHHHHHHH
Confidence 0 11110 24588888999999999
Q ss_pred hhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-------HHHHH--HHhhcccCCcc
Q 000330 1225 ELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-------VLMKA--RLQKHDFGDLS 1295 (1652)
Q Consensus 1225 ~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-------~L~AA--yL~~K~m~~~A 1295 (1652)
+. .+. ........++...+++.+++.++|+++|+++.+.+-....+ .|.+. +|...+ +..|
T Consensus 146 ~~-e~~--------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A 215 (282)
T PF14938_consen 146 EQ-EGS--------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAA 215 (282)
T ss_dssp HH-TT---------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HH-CCC--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHH
Confidence 86 221 22334455565666677889999999999999987654322 23333 333333 6678
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1296 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1296 ~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
...|+.....+|.=...-.|....=|--+++.+|.+..-..+..
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999866554455555545566777776665555544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=3.3 Score=52.74 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1090 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1090 (1652)
.+..+++..+|...|--.|.---.|-.|+.+.++.++-.....-|+++|+--|-+-.||.-|++.---.-+.- +.-.
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~---~~lr 134 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDP---ETLR 134 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCH---HHHH
Confidence 3445999999999999999999999999999999999999999999999999999999999998663333332 4456
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1091 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1091 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
..||++.... . .+|..--+|-..+.....++++......+.||..
T Consensus 135 ~~fe~A~~~v--G---~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 135 DLFERAKSYV--G---LDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhc--c---cchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6666665554 2 3456667888889999999999999999999995
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.037 Score=69.13 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=91.2
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--C------chHHHHHHHHHhh--CCCC---
Q 000330 999 MALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN--S------VGKDDMFSYSVKH--NEGS--- 1065 (1652)
Q Consensus 999 lAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~--~------eea~emlekAVel--nP~N--- 1065 (1652)
.|..++++. ..+.+..|..+|.+|++++|+.+.+|-.++..|..+.. + ..+.+..++|+.+ +|..
T Consensus 345 rg~~~~~~~--~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 345 QAHHYLNSG--DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 345555543 35678999999999999999999999998776643311 1 1244555666554 4333
Q ss_pred HH-HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1066 YA-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1066 Y~-LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
|. ++.+++..+ .+++|...|+++...+ ++ -+.+..+.++|...|+++.|+..+.+-+.
T Consensus 423 ~~ala~~~~~~g--------~~~~A~~~l~rAl~L~-ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 423 YEILAVQALVKG--------KTDEAYQAINKAIDLE-MS--------WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHHHHHHcC-CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33 777777777 8899999999998887 44 46899999999999999999997766654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.1 Score=58.42 Aligned_cols=317 Identities=11% Similarity=-0.011 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHH
Q 000330 1012 EGMKKALSLLSRALEADPT---------SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYI 1073 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPt---------SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYI 1073 (1652)
++++.|..++.++++.-+. ..++...++.++...+...++..+++.|++..|.... ++.+|.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 4568888888888765332 1233344556677788888899999999986554432 344455
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000330 1074 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1153 (1652)
Q Consensus 1074 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSL 1153 (1652)
..+ .|++|+..|++..... ... .......-.+..+..++...|+++.|...+.+....+...
T Consensus 503 ~~G--------~~~~A~~~~~~al~~~-~~~-g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-------- 564 (903)
T PRK04841 503 CKG--------ELARALAMMQQTEQMA-RQH-DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ-------- 564 (903)
T ss_pred HcC--------CHHHHHHHHHHHHHHH-hhh-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------
Confidence 555 6788888887765543 111 0112223356677888899999999999666555311110
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000330 1154 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1233 (1652)
Q Consensus 1154 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1233 (1652)
+..........+ .+.+.++...|...+|. .++..|...+.. .+.
T Consensus 565 ---------~~~~~~~~~~~~-----~~la~~~~~~G~~~~A~------------------~~~~~al~~~~~-~~~--- 608 (903)
T PRK04841 565 ---------HLEQLPMHEFLL-----RIRAQLLWEWARLDEAE------------------QCARKGLEVLSN-YQP--- 608 (903)
T ss_pred ---------ccccccHHHHHH-----HHHHHHHHHhcCHHHHH------------------HHHHHhHHhhhc-cCc---
Confidence 110001011111 11244444444444443 333333222221 110
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---hhH-----HHHHHHHhhcccCCccHHHHHHHHHh
Q 000330 1234 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC---LEL-----VLMKARLQKHDFGDLSSVGFEEALIK 1305 (1652)
Q Consensus 1234 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d---~eL-----~L~AAyL~~K~m~~~A~svle~AL~~ 1305 (1652)
......-....+.+...++.+.|...+..++...+.. ... .+...++...+..+.+...+......
T Consensus 609 ------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 609 ------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 0001111122233334778999999998887654322 111 11222323333244555555554432
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000330 1306 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1385 (1652)
Q Consensus 1306 ~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~ 1385 (1652)
.+.........+..+....+..+++++|..++.+... ..+..... .
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~--------------~~~~~g~~--------------------~ 728 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE--------------NARSLRLM--------------------S 728 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------HHHHhCch--------------------H
Confidence 2222211222345667778888899999888766322 21111100 0
Q ss_pred hhHH--HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHH
Q 000330 1386 DVMF--GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1424 (1652)
Q Consensus 1386 d~~f--a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i 1424 (1652)
+.+. ..++.+|+. .|+.++|..++.+||.......+.
T Consensus 729 ~~a~~~~~la~a~~~--~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 729 DLNRNLILLNQLYWQ--QGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhCccchh
Confidence 1111 455666766 999999999999999988876554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0053 Score=74.88 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=66.5
Q ss_pred hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000330 987 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNSVGKDDMFSYSVKHNE 1063 (1652)
Q Consensus 987 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaea---Wy~yl~lY~~~~~~eea~emlekAVelnP 1063 (1652)
+..|.+.+.|+.++.-+... |+|+.|+..|++||+++|+++++ ||.++..|..++..+++.++|++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l-----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK-----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 46688889999999988776 56899999999999999999965 99999999999999999999999999853
Q ss_pred CCH
Q 000330 1064 GSY 1066 (1652)
Q Consensus 1064 ~NY 1066 (1652)
..|
T Consensus 144 ~~f 146 (453)
T PLN03098 144 LKF 146 (453)
T ss_pred hhH
Confidence 333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.019 Score=66.02 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=82.7
Q ss_pred CHHHHHHHHHH-HHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCC
Q 000330 1031 SEILWITYLLI-FYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1102 (1652)
Q Consensus 1031 SaeaWy~yl~l-Y~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~ 1102 (1652)
++..||..+.- +...+...++...|++.++..|++ |||+..|.+.+ .|++|+..|...++.+ |
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--------~~~~A~~~f~~vv~~y-P 211 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--------KKDDAAYYFASVVKNY-P 211 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-C
Confidence 45788888664 455677778999999999999987 66889999999 9999999999999988 4
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1103 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1103 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
+ |....|.++.+..+|...|++++|+.++..+..
T Consensus 212 ~----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 K----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred C----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 345699999999999999999999999888774
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.042 Score=62.27 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000330 991 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW---ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1067 (1652)
Q Consensus 991 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW---y~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1067 (1652)
.+.+.+...|...+.. |+|+.|+..|..+++.+|.++.+- +.++..|++.++-.++...|++.++..|++-.
T Consensus 30 ~~~~~~Y~~A~~~~~~-----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQD-----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 3556677888888775 568999999999999999988776 88899999999999999999999999999876
Q ss_pred HH-HHHHh------cC-------CC--cccch-hhHHHHHHHHHHhhhcCCCCcch---hhhhhH-------HHHHHHHH
Q 000330 1068 LW-LMYIN------SR-------TP--LNHRL-DAYDAALSVLCRCASASDGDEMH---ASACIL-------DLFLQMLQ 1120 (1652)
Q Consensus 1068 Lw-lmYIn------sr-------~s--lddrl-~~YdkAI~aLe~las~~~~Dr~~---~Sa~iL-------DILL~Lvq 1120 (1652)
.- -+|.. .. .. ..+++ ..-.+|+..|.+....+ |+-.. +-..+. +-=+....
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12221 11 00 11222 12367999999999999 45211 111222 22245567
Q ss_pred HHHHhcCHHHHHHHHHhhcc
Q 000330 1121 CFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1121 LY~qSGnydKAI~ti~rLEq 1140 (1652)
+|...|.|.-||.++..+..
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 78888888888888877774
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0078 Score=68.73 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=87.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH--------HHHHHHhc-CCCc
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA--------LWLMYINS-RTPL 1079 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~--------LwlmYIns-r~sl 1079 (1652)
.+.|..|-.++.+ +.....++.+|..-+.+|... ...++.++|++|+++. -++.. ++.+|.+. +
T Consensus 55 ~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--- 129 (282)
T PF14938_consen 55 AEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--- 129 (282)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---
Confidence 3334444444433 222233555666666676555 6778889999998752 23333 66777776 5
Q ss_pred ccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc----ccchHHH
Q 000330 1080 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR----HSLFLSD 1155 (1652)
Q Consensus 1080 ddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE----~~lSLsK 1155 (1652)
.|++|++.|.+++.-+..+ .......++++.+..|+...|+|++||..+.++....++...- +...+..
T Consensus 130 -----d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 130 -----DYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp ------HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 7888999888877765222 2556778999999999999999999999888876533322111 1233445
Q ss_pred HHHhhccCCc
Q 000330 1156 ILTCLTISDK 1165 (1652)
Q Consensus 1156 i~~YLt~sDR 1165 (1652)
+..||.++|-
T Consensus 203 ~l~~L~~~D~ 212 (282)
T PF14938_consen 203 ILCHLAMGDY 212 (282)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHcCCH
Confidence 5555655553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.32 Score=60.87 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=76.2
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHcCC
Q 000330 1253 MAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEYALQNGR 1329 (1652)
Q Consensus 1253 lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~al~~en 1329 (1652)
|....|.+-|...|...|+.+|++... .-+..||.--+-..-++.+|++++.. .|+... .+|.-.|.++-.=||
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~---~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK---EIWDRMLEYESNVGD 487 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH---HHHHHHHHHHHhccc
Confidence 333448888889999999999999999 77778876655466888999999998 554443 699999999999999
Q ss_pred hHHHHHHHHHHHHhhhhc
Q 000330 1330 HDFAAELMDRWFHSVWKV 1347 (1652)
Q Consensus 1330 ~d~ai~Lc~~ff~gia~~ 1347 (1652)
+..++.|-++.|..+...
T Consensus 488 L~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 999999999988877644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=60.65 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=73.9
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHH
Q 000330 1021 LSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCR 1095 (1652)
Q Consensus 1021 LsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~ 1095 (1652)
|.-...+. ++.=+..|.|+..+++.++-.++..+|+..+.++|.+.. |+.+|...+ .|.+||.+|..
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~ 94 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGR 94 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 34445666 777777777777777777777777888888888877766 667777777 77888888877
Q ss_pred hhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000330 1096 CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1096 las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1138 (1652)
+..-. ++- -...+.+..+|.+-|+.+.|++.+..-
T Consensus 95 A~~L~-~dd-------p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 95 AAQIK-IDA-------PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHhcC-CCC-------chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77766 343 567777788888888888877754433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.032 Score=58.93 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-----H--HHHHHHhcCCCcccchhhHHH
Q 000330 1018 LSLLSRALEADP--TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-----A--LWLMYINSRTPLNHRLDAYDA 1088 (1652)
Q Consensus 1018 LdLLsrALEINP--tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-----~--LwlmYInsr~slddrl~~Ydk 1088 (1652)
.+++...+.+++ ..+.+++.++.+|...+..+++.++|++|++..|+.. + ++.+|...+ .|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~ 90 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDK 90 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHH
Confidence 344445555444 4566778889999999999999999999999877532 1 677788777 8999
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcC
Q 000330 1089 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGN 1127 (1652)
Q Consensus 1089 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGn 1127 (1652)
|+.+|.+..... ++. .+.+..+..+|...|+
T Consensus 91 A~~~~~~al~~~-p~~-------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 91 ALEYYHQALELN-PKQ-------PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHcCC
Confidence 999999988877 454 5667777778877766
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.039 Score=64.20 Aligned_cols=225 Identities=14% Similarity=0.052 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1164 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1164 (1652)
+|..+|.-.. .....+... ++...++...|...|.++.+|.- |. ++.+|.-..+.-+..|+...+
T Consensus 16 ~Y~~~i~e~~-~~~~~~~~~-------~e~~~~~~Rs~iAlg~~~~vl~e---i~----~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 16 NYQQCINEAS-LKSFSPENK-------LERDFYQYRSYIALGQYDSVLSE---IK----KSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp -HHHHCHHHH-CHTSTCHHH-------HHHHHHHHHHHHHTT-HHHHHHH---S-----TTSSCCCHHHHHHHHHHCTST
T ss_pred hHHHHHHHhh-ccCCCchhH-------HHHHHHHHHHHHHcCChhHHHHH---hc----cCCChhHHHHHHHHHHHhCcc
Confidence 6788886554 333332234 77888888999999999987762 22 222332334555667776633
Q ss_pred cc-hh------hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000330 1165 KL-IF------WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1234 (1652)
Q Consensus 1165 R~-~A------WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1234 (1652)
+. .+ |+...+ ...++++-+-+|...|...+|+.+ +.+.-.-|+-... +..|=. .|.-+++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~---l~~~~~lE~~al~------Vqi~L~-~~R~dlA 150 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKL---LHKGGSLELLALA------VQILLK-MNRPDLA 150 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCC---CTTTTCHHHHHHH------HHHHHH-TT-HHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHH---HHccCcccHHHHH------HHHHHH-cCCHHHH
Confidence 22 11 333332 234566677777777888888887 5554222222111 222211 3444444
Q ss_pred hhh---h-----hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHH
Q 000330 1235 KET---N-----LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1304 (1652)
Q Consensus 1235 ~~~---~-----~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~ 1304 (1652)
... - ..+...+...++..+..-+....|.-.|+.+.+.+|..+.+ .+..++|..++ .++|...+++|+.
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~ 229 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 443 1 11112222222222222335778888888888887777777 56666666665 7778888888888
Q ss_pred hCCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHHH
Q 000330 1305 KWPKGVPGIQCIWNQYVEYALQNGRH-DFAAELMDR 1339 (1652)
Q Consensus 1305 ~~PkNa~g~~caW~QLIq~al~~en~-d~ai~Lc~~ 1339 (1652)
.+|+++. ...-+|-.....|+. +.+.+...+
T Consensus 230 ~~~~~~d----~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 230 KDPNDPD----TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp C-CCHHH----HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hccCCHH----HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 8888777 444445555555555 444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.24 Score=60.38 Aligned_cols=292 Identities=13% Similarity=0.007 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH-HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000330 1031 SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1109 (1652)
Q Consensus 1031 SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw-lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1109 (1652)
.+.++-++..+..-.-+..+.-.|-..+|...|.-.|+| |.|.--.-... +- .|..+....-+.-..+ +++
T Consensus 160 cp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~-~h-s~a~~t~l~le~~~~l-r~N----- 231 (564)
T KOG1174|consen 160 CPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNF-KH-SDASQTFLMLHDNTTL-RCN----- 231 (564)
T ss_pred cchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhc-cc-chhhhHHHHHHhhccC-Ccc-----
Confidence 455555555555444556667788889999998888866 44433220000 00 3344555544555666 677
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhh
Q 000330 1110 CILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLL 1189 (1652)
Q Consensus 1110 ~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~ 1189 (1652)
.+++..+.++|...|++++|+.+..... ..+| ..+..|-+ |..|+ .+.
T Consensus 232 --vhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dp--y~i~~MD~-------------------Ya~LL----~~e 279 (564)
T KOG1174|consen 232 --EHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANP--DNVEAMDL-------------------YAVLL----GQE 279 (564)
T ss_pred --HHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCCh--hhhhhHHH-------------------HHHHH----Hhc
Confidence 9999999999999999999999443332 2333 11111111 22211 111
Q ss_pred hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH
Q 000330 1190 ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY 1269 (1652)
Q Consensus 1190 e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl 1269 (1652)
+. |.++ -.-.-.||+- +-| +....=+. ...+..-.+...|+.+-.+.
T Consensus 280 g~----------~e~~----~~L~~~Lf~~--~~~----------------ta~~wfV~-~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 280 GG----------CEQD----SALMDYLFAK--VKY----------------TASHWFVH-AQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred cC----------HhhH----HHHHHHHHhh--hhc----------------chhhhhhh-hhhhhhhhhHHHHHHHHHHH
Confidence 10 0000 0000112221 101 11111111 11212233888899999999
Q ss_pred HHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcc
Q 000330 1270 IKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQ 1348 (1652)
Q Consensus 1270 Lk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q 1348 (1652)
+...|..++- .|++..|..-+-++.|+-.|..|..+.|-.-. ++.=|+...+..+++.+|.-+.+.-|..+..+.
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~----~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE----IYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 9999999998 88888764444499999999999999998888 777789999999999999999877665554432
Q ss_pred cccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHH
Q 000330 1349 YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVR 1428 (1652)
Q Consensus 1349 ~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLN 1428 (1652)
+ +|..+ |--.|..--..-++|...|||+|+.+|+= +...+
T Consensus 403 ~----~LtL~----------------------------------g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~ 442 (564)
T KOG1174|consen 403 R----SLTLF----------------------------------GTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVN 442 (564)
T ss_pred h----hhhhh----------------------------------cceeeccCchhHHHHHHHHHhhhccCCcc--HHHHH
Confidence 2 22222 21111111334589999999999999987 99999
Q ss_pred HHHHHHhcCCC
Q 000330 1429 EHAMLLLINES 1439 (1652)
Q Consensus 1429 NYAYFLS~e~~ 1439 (1652)
--|-.++.+|+
T Consensus 443 ~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 443 LIAELCQVEGP 453 (564)
T ss_pred HHHHHHHhhCc
Confidence 99999999886
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.044 Score=65.23 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=84.7
Q ss_pred hhhhccc-cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000330 985 KLKQVEL-SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1063 (1652)
Q Consensus 985 ~le~~~~-d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1063 (1652)
+++.-.. +.++||..+.-+| |+|+.|++.|.-+.+-+--.+++|..++..+...|.-.++...-++| |
T Consensus 50 ~~~~EEE~~~~lWia~C~fhL-------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~ 118 (557)
T KOG3785|consen 50 NLDREEEDSLQLWIAHCYFHL-------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----P 118 (557)
T ss_pred ccchhhhHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----C
Confidence 4444333 5599999988776 77999999999999988889999999988877777666665554444 5
Q ss_pred CCHH----HHHHHHhcCCCcccchhhHHHHHHHH-HHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000330 1064 GSYA----LWLMYINSRTPLNHRLDAYDAALSVL-CRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1064 ~NY~----LwlmYInsr~slddrl~~YdkAI~aL-e~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1138 (1652)
.+-. |..+-.+.. | ++-+..+ +++ .|- ++=-|.|+-..-|--.|+.||.++.|+
T Consensus 119 k~pL~~RLlfhlahkln----d-----Ek~~~~fh~~L-----qD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLN----D-----EKRILTFHSSL-----QDT-------LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred CChHHHHHHHHHHHHhC----c-----HHHHHHHHHHH-----hhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 222222222 1 3333333 222 232 344566777777778899999999999
Q ss_pred cc
Q 000330 1139 LI 1140 (1652)
Q Consensus 1139 Eq 1140 (1652)
++
T Consensus 178 L~ 179 (557)
T KOG3785|consen 178 LQ 179 (557)
T ss_pred Hh
Confidence 97
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=63.93 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=78.9
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1084 (1652)
..+|+|+.|..+|..|+.++|++-.+|..-+..|...++-++++.--.+.++++|+=-. ++--.+..+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg-------- 84 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG-------- 84 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc--------
Confidence 45799999999999999999999999999999999999988888889999999984211 445555555
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1122 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1122 (1652)
.|++|+..|.+..+.. +++ --+.--|++.+
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n-------~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSN-------KQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcC-Cch-------HHHHHhHHHhh
Confidence 8999999999888887 665 33444455555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.04 Score=57.82 Aligned_cols=106 Identities=11% Similarity=0.037 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchh
Q 000330 1014 MKKALSLLSRALEADPTS--EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1014 ydAALdLLsrALEINPtS--aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~ 1084 (1652)
|..+.+.|...+..++.. +.+|+.++.++..++..+++...|++|+++.|+... ++.+|...+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------- 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------- 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------
Confidence 455566666666666666 778899999999999999999999999999776432 778888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHH-------HhcCHHHHHHHH
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-------MSGNTEKAIQRI 1135 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~-------qSGnydKAI~ti 1135 (1652)
.+++|+..|++..+.. ++. .+.+..+..+|. ..|+++.|+..+
T Consensus 87 ~~~eA~~~~~~Al~~~-~~~-------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 87 EHTKALEYYFQALERN-PFL-------PQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred CHHHHHHHHHHHHHhC-cCc-------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8999999999988876 565 455666666666 778877665533
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.061 Score=68.52 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000330 1112 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1191 (1652)
Q Consensus 1112 LDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1191 (1652)
++.|-..+.||+..|..+||-..+.+... ..| |. .|+| ++||+..+..+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-----k~~---------------d~--~lyc---------~LGDv~~d~s~ 472 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-----KDP---------------DP--RLYC---------LLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-----CCC---------------cc--hhHH---------HhhhhccChHH
Confidence 45666778899999988888776655552 111 11 3443 36777777777
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH---------HHHHHhcCHHHH
Q 000330 1192 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI---------WCMAVLNGLECS 1262 (1652)
Q Consensus 1192 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I---------R~lI~LEDse~A 1262 (1652)
..+|+.+ .+.-++.|..+.|--.|+. .. +++..+.....+.+|.+ -+.+.+++.+.+
T Consensus 473 yEkawEl---------sn~~sarA~r~~~~~~~~~----~~-fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 473 YEKAWEL---------SNYISARAQRSLALLILSN----KD-FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHH---------hhhhhHHHHHhhccccccc----hh-HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777776 2233444554433222321 11 11112233334444432 222347799999
Q ss_pred HHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1263 MNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1263 ~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
...|...+.+.|...+- -|.++||.+++ ..+|+..+.+|+.-+=++-. +|.-|.-.+..-+.+++|++.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~----iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQ----IWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCe----eeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999 89999999887 88999999999999988888 999999999999999999998866
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.015 Score=52.02 Aligned_cols=64 Identities=13% Similarity=0.257 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000330 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1100 (1652)
Q Consensus 1030 tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~ 1100 (1652)
.++.+|+.++.+|...++-.++..+|++|++++|++.. ++..|...+ ..|++|+..+.+..+.+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------KDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999998877 566777775 15889999988776654
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=61.98 Aligned_cols=92 Identities=10% Similarity=-0.018 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1069 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1069 (1652)
+.--.+|.....+ |+++.|..+|.-...+||.++.-||-|+..+-.+++-.++.+.|.+|+.++|+++. ++
T Consensus 36 ~~lY~~A~~ly~~-----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEV-----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 5555666666665 56799999999999999999999999999999999999999999999999999988 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000330 1070 LMYINSRTPLNHRLDAYDAALSVLCRCAS 1098 (1652)
Q Consensus 1070 lmYInsr~slddrl~~YdkAI~aLe~las 1098 (1652)
..|+..+ ..+.|+..|.....
T Consensus 111 ~c~L~lG--------~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACD--------NVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcC--------CHHHHHHHHHHHHH
Confidence 8999988 66888888865444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.015 Score=54.45 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHHhhCCCC----HH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH
Q 000330 1046 TNSVGKDDMFSYSVKHNEGS----YA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML 1119 (1652)
Q Consensus 1046 ~~~eea~emlekAVelnP~N----Y~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lv 1119 (1652)
+.-+.+..+|+++++..|.+ ++ ++..|.+.+ .|++|+.+|.+ .... +.. .++.+.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--------~y~~A~~~~~~-~~~~-~~~-------~~~~~l~a 65 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--------KYEEAIELLQK-LKLD-PSN-------PDIHYLLA 65 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--------HHHHHHHHHHC-HTHH-HCH-------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--------CHHHHHHHHHH-hCCC-CCC-------HHHHHHHH
Confidence 34456889999999999964 34 588999999 99999999977 3333 333 67777889
Q ss_pred HHHHHhcCHHHHHHHHHh
Q 000330 1120 QCFCMSGNTEKAIQRISR 1137 (1652)
Q Consensus 1120 qLY~qSGnydKAI~ti~r 1137 (1652)
+++...|+|++||..|.+
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 999999999999997754
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0072 Score=53.64 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=46.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH--HhhcccCCccHHHHHHHHHhCCCCC
Q 000330 1250 IWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR--LQKHDFGDLSSVGFEEALIKWPKGV 1310 (1652)
Q Consensus 1250 IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy--L~~K~m~~~A~svle~AL~~~PkNa 1310 (1652)
.+.++..++.++|+.+|+++++..|.+.+.++..+. +..+ -.++|+..|++++...|+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCC
Confidence 345566779999999999999999999999333333 3333 38899999999999999874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.10 E-value=6.5 Score=49.94 Aligned_cols=388 Identities=11% Similarity=0.072 Sum_probs=207.8
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1064 (1652)
.||..|.|...|-.|..-+=.+. ++++...|..-+...|.++.+|..|+.-.+..+.-+.+...|.+-+.-. -
T Consensus 12 rie~nP~di~sw~~lire~qt~~------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L 84 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQP------IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L 84 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccCC------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h
Confidence 67889999999999888777773 4999999999999999999999999999888887777777777776544 4
Q ss_pred CHHHHHHHHhcCCCcccchhhH-HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH------HHHhcCHHHHHHHHHh
Q 000330 1065 SYALWLMYINSRTPLNHRLDAY-DAALSVLCRCASASDGDEMHASACILDLFLQMLQC------FCMSGNTEKAIQRISR 1137 (1652)
Q Consensus 1065 NY~LwlmYInsr~slddrl~~Y-dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqL------Y~qSGnydKAI~ti~r 1137 (1652)
|..||-+||.=-....+++.-| +...++|.=......-|. .|..|-+-+...+.= |..+.++++....+.|
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di--~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDI--KSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 6779988886322222222121 233334422222211233 455544444433332 3344456655555555
Q ss_pred hcccccCCCCcccchHHHHH-HhhccC--------CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhcc----------
Q 000330 1138 LLIPATGSNDRHSLFLSDIL-TCLTIS--------DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAI---------- 1198 (1652)
Q Consensus 1138 LEq~Al~g~sE~~lSLsKi~-~YLt~s--------DR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I---------- 1198 (1652)
... .| -..|+++. .|.+-. .|-++-..-+|--..++.-.=-.+..|-...++.+
T Consensus 163 al~------tP-m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 163 ALV------TP-MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred Hhc------Cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 553 44 44566665 332211 11111223333111111111112223322333333
Q ss_pred ---------CCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH--H----------HHHH-HH
Q 000330 1199 ---------DWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN--H----------IWCM-AV 1255 (1652)
Q Consensus 1199 ---------~W~y~~vlk-~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN--~----------IR~l-I~ 1255 (1652)
.|.-..-++ .+-++...-+.-|+ +++..++... + +..+ ..
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay-----------------eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY-----------------EQCLLYLGYHPEIWYDYSMYLIEISDLLTE 298 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHH-----------------HHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence 333222222 11111111112111 1222222220 0 1111 11
Q ss_pred hcC-------HHHHHHHHHHHHHhCCCchhH--HHHHHHHh--hcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000330 1256 LNG-------LECSMNLLEKYIKLYPSCLEL--VLMKARLQ--KHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEY 1323 (1652)
Q Consensus 1256 LED-------se~A~~LfdklLk~~P~d~eL--~L~AAyL~--~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~ 1323 (1652)
.+| .+++.+++++.+..--..-.+ ..++.|=+ .++...+.. ..+++++.+.-.+.. =.|.||+..
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~ 375 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNF 375 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHH
Confidence 122 556666666666543332222 33333311 111123344 777888877766665 267889999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH-HHHHhhhc
Q 000330 1324 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQN 1402 (1652)
Q Consensus 1324 al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD-~L~q~Lqg 1402 (1652)
+.+.++...|..|..+ |-+.-+ +. -++| ..-.. =||- .+
T Consensus 376 irR~eGlkaaR~iF~k--------------aR~~~r-~~------------hhVf-----------Va~A~mEy~c--sk 415 (656)
T KOG1914|consen 376 IRRAEGLKAARKIFKK--------------AREDKR-TR------------HHVF-----------VAAALMEYYC--SK 415 (656)
T ss_pred HHHhhhHHHHHHHHHH--------------HhhccC-Cc------------chhh-----------HHHHHHHHHh--cC
Confidence 9999999999988865 111001 00 1223 22222 2333 68
Q ss_pred CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000330 1403 DWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1454 (1652)
Q Consensus 1403 ~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV 1454 (1652)
+.+=||..|+--|+.=++. -...+.|+-||+- |.+++.....|+.+
T Consensus 416 D~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~----lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDS--PEYVLKYLDFLSH----LNDDNNARALFERV 461 (656)
T ss_pred ChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHH----hCcchhHHHHHHHH
Confidence 8889999999999988877 6677888888886 55666666655433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.7 Score=59.94 Aligned_cols=361 Identities=11% Similarity=0.102 Sum_probs=209.7
Q ss_pred hcccc-cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC------------CCchHHHHHHHHHhhCCCCHH--H
Q 000330 1004 LNQDA-NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT------------NSVGKDDMFSYSVKHNEGSYA--L 1068 (1652)
Q Consensus 1004 Lnq~~-n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~------------~~eea~emlekAVelnP~NY~--L 1068 (1652)
|++.. -..|++|+||.-.+-. .+..+|-.++.+-.+.. +..-....+++|.+.. ++.. +
T Consensus 733 l~FSfyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-~e~eakv 806 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-EEDEAKV 806 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-cchhhHH
Confidence 44443 3578999998655443 57788998887654221 1122346678885544 4444 8
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000330 1069 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1148 (1652)
Q Consensus 1069 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE 1148 (1652)
+-+-|..+ +.++|+.+|-+. +++ |+ |=+||..+|.++.|.+ |-. +-+...-
T Consensus 807 AvLAieLg--------MlEeA~~lYr~c-kR~------------DL---lNKlyQs~g~w~eA~e----iAE-~~DRiHL 857 (1416)
T KOG3617|consen 807 AVLAIELG--------MLEEALILYRQC-KRY------------DL---LNKLYQSQGMWSEAFE----IAE-TKDRIHL 857 (1416)
T ss_pred HHHHHHHh--------hHHHHHHHHHHH-HHH------------HH---HHHHHHhcccHHHHHH----HHh-hccceeh
Confidence 88888888 889999988332 222 33 4578889999999998 332 0111100
Q ss_pred ccchHHHHHHhhccCCcchhhHHHH-----H-HHHhhcc---chHH--HhhhhhhhhhhccCCC-CcccchhhHHHHHHH
Q 000330 1149 HSLFLSDILTCLTISDKLIFWVCCV-----Y-LVIYRKL---PDAV--LQLLECEKELFAIDWP-PVQLEDDEKQRAIKL 1216 (1652)
Q Consensus 1149 ~~lSLsKi~~YLt~sDR~~AWL~~i-----Y-llrYrvL---PGd~--y~q~e~~KEAf~I~W~-y~~vlk~EPdnalAL 1216 (1652)
--+--...-||...-+|.+-|.|- | .-.+|-| |+.+ |-+..+++.+|.. |- |-. ...|-|-|+..
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlE-S~GemdaAl~~ 934 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLE-SVGEMDAALSF 934 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHh-cccchHHHHHH
Confidence 001223445566555555544432 2 2222222 2222 4555555555655 43 322 33567888888
Q ss_pred HHHHHHHHhh-----hcCCcchhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH------HHhCCCc------
Q 000330 1217 IEMAVNSVEL-----YSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY------IKLYPSC------ 1276 (1652)
Q Consensus 1217 ~smA~dYY~~-----~~ndesla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl------Lk~~P~d------ 1276 (1652)
.+.|-|||.. +.|+-+.+... +.+.+.|.-+ -|.|...|+..+|+..|.++ +.+|-++
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhl--aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHL--ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9998888875 22333333333 3333444433 24444455777776655443 3333221
Q ss_pred ---------hhHHHHHHHHhhccc-CCccHHHHHHH------HHhC--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000330 1277 ---------LELVLMKARLQKHDF-GDLSSVGFEEA------LIKW--PKGVPGIQCIWNQYVEYALQNGRHDFAAELMD 1338 (1652)
Q Consensus 1277 ---------~eL~L~AAyL~~K~m-~~~A~svle~A------L~~~--PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~ 1338 (1652)
-++..+|.|.+.+++ -..|+..|.+| |++. -.-.. =.|||---+..+.=.+.++=|.
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~-----aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS-----ALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH-----HHHHHHHhcCCCCCHHHHHHHH
Confidence 234566778877763 55666655543 3222 11122 2466766777777777888888
Q ss_pred HHHHhhhhccc---------ccccchhhhcccCCCCCCCCC----CCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000330 1339 RWFHSVWKVQY---------SQVEISDPLVADMSHSSPEST----STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1405 (1652)
Q Consensus 1339 ~ff~gia~~Q~---------~~deALDaLrkgns~i~~es~----s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1405 (1652)
.||.....+++ ...+||.++...|-+++.+.. +.-.+||-...+. .+.-+++++..+ +|.+.
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~---~vLeqvae~c~q--QG~Yh 1162 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERK---QVLEQVAELCLQ--QGAYH 1162 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHH---HHHHHHHHHHHh--ccchH
Confidence 89999999987 788888888877777765542 2112333322223 356889999999 99998
Q ss_pred HHHHHHHHH
Q 000330 1406 EARLAIDAA 1414 (1652)
Q Consensus 1406 EAfaAYDKA 1414 (1652)
-|-.-|-.|
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 887766554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.041 Score=67.61 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHH-HHHhcCCCcccchhh
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWL-MYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----Lwl-mYInsr~slddrl~~ 1085 (1652)
++++.|+.+|.+|+++||+.+.+||.++.+-.-.|..+++.+.+++|++++|--.. ||. ||-..+ +
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~------~-- 423 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP------L-- 423 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc------h--
Confidence 34799999999999999999999999999888888889999999999999997765 998 999888 3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhh-hhHHHHHHHHHH
Q 000330 1086 YDAALSVLCRCASASDGDEMHASA-CILDLFLQMLQC 1121 (1652)
Q Consensus 1086 YdkAI~aLe~las~~~~Dr~~~Sa-~iLDILL~LvqL 1121 (1652)
+.||.+|-...+.. |+ -|.|-+|.+-||
T Consensus 424 -~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 452 (458)
T PRK11906 424 -KNNIKLYYKETESE-------SHRVIIDNILKLKQL 452 (458)
T ss_pred -hhhHHHHhhccccc-------cchhhHHHHHHHHHH
Confidence 88999993332221 22 456766666655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.063 Score=61.85 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1087 (1652)
|+|..|...|.++.+.+|++.++|.-++-.|.+.+...+++..|.+|.++.|.+-. |+-.|+=.+ .++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g--------d~~ 185 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG--------DLE 185 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC--------CHH
Confidence 67899999999999999999999999999999999999999999999999988766 443333334 469
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1136 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~ 1136 (1652)
+|...|...+..-+.| .-|..-|+-+....|+++-|-.++.
T Consensus 186 ~A~~lll~a~l~~~ad--------~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 186 DAETLLLPAYLSPAAD--------SRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHhCCCCc--------hHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999998888776334 4577778888899999999888443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.96 Score=59.87 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHH
Q 000330 1014 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAA 1089 (1652)
Q Consensus 1014 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkA 1089 (1652)
...||..|=++|.+||+=+.+|..+++||.....-.-+..+|.+|.+++|..+. ++-+|.... ..+.|
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cHHHH
Confidence 588999999999999999999999999998777666688999999999998888 556676665 55555
Q ss_pred HHHHHHhhhcCCCCc----------------chh--------hh-----hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1090 LSVLCRCASASDGDE----------------MHA--------SA-----CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1090 I~aLe~las~~~~Dr----------------~~~--------Sa-----~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
..+.-+.+... +-. ... || -=...|+.+.+.|..+|+|..|+.+.++.-+
T Consensus 546 ~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 55532211111 000 000 11 1156788888888888888888886666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.032 Score=70.87 Aligned_cols=129 Identities=18% Similarity=0.108 Sum_probs=103.6
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhc
Q 000330 1000 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINS 1075 (1652)
Q Consensus 1000 Al~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYIns 1075 (1652)
|..+++...-..++|.+|..-|.+.|++||--...||.+...+.+..+-..+.++|-++|.++|++.. |.-.||..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 55665555544578899999999999999999999999999998999888899999999999999998 44556666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000330 1076 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1144 (1652)
Q Consensus 1076 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~ 1144 (1652)
+ +-.+|...+-++.+.+ -+. --+|.--+-+....|+++.|++.+-|++.-..+
T Consensus 567 ~--------~k~ra~~~l~EAlKcn-~~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 567 K--------KKKRAFRKLKEALKCN-YQH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred h--------hhHHHHHHHHHHhhcC-CCC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 6 5578888887777766 444 557777788888999999999999998863333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.2 Score=59.97 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=125.1
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1147 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1147 (1652)
++..|-..+ +|++|+.+|..+....+++ -++++.|+=++..-|.|..|-+ |-..|.+ +
T Consensus 63 ia~C~fhLg--------dY~~Al~~Y~~~~~~~~~~--------~el~vnLAcc~FyLg~Y~eA~~----~~~ka~k--~ 120 (557)
T KOG3785|consen 63 IAHCYFHLG--------DYEEALNVYTFLMNKDDAP--------AELGVNLACCKFYLGQYIEAKS----IAEKAPK--T 120 (557)
T ss_pred HHHHHHhhc--------cHHHHHHHHHHHhccCCCC--------cccchhHHHHHHHHHHHHHHHH----HHhhCCC--C
Confidence 444555555 8999999998776654344 4556666666666678888777 3332222 2
Q ss_pred cccchHHHHH--HhhccCCcchhhHHHHH----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHH
Q 000330 1148 RHSLFLSDIL--TCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1221 (1652)
Q Consensus 1148 E~~lSLsKi~--~YLt~sDR~~AWL~~iY----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~ 1221 (1652)
| .-.++. +-...+|.+. |+..-- -++-+.-++.+--..-..+||.++ |.+++.++|+....-+.||+
T Consensus 121 p---L~~RLlfhlahklndEk~-~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv---YkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 121 P---LCIRLLFHLAHKLNDEKR-ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV---YKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred h---HHHHHHHHHHHHhCcHHH-HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhcChhhhhhHHHHHH
Confidence 2 000111 1122223211 221110 001111111221112257899999 99999999998877778877
Q ss_pred HHHhhhcCC---cchhhhhhhchhhHhHHHHHHHHH--H-hc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000330 1222 NSVELYSNG---ESLEKETNLRSAHCFAVNHIWCMA--V-LN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1293 (1652)
Q Consensus 1222 dYY~~~~nd---esla~~~~~kt~~~fKLN~IR~lI--~-LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1293 (1652)
=||..+--+ +-+..-...--+.-+++|+..|.. . ++ --++..+|.+-+-+.+|.-.+| +--.|-.-.+.+
T Consensus 194 CyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l--~rHNLVvFrngE 271 (557)
T KOG3785|consen 194 CYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL--CRHNLVVFRNGE 271 (557)
T ss_pred HHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH--HHcCeEEEeCCc
Confidence 666642221 111111111122223333322221 1 22 2344455666666555543333 111121222367
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1294 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1294 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
.|..|+-..+..-|. +|.-||-+.++++|..+|+.||+.
T Consensus 272 gALqVLP~L~~~IPE-------ARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPE-------ARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred cHHHhchHHHhhChH-------hhhhheeeecccccHHHHHHHHhh
Confidence 777787777777663 788889999999999999999998
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.2 Score=59.60 Aligned_cols=229 Identities=18% Similarity=0.126 Sum_probs=144.6
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1147 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1147 (1652)
++-.|+..+ .|-+|-..|-...+.+ +- .|.++.|.+.|..-..-..|+.+|..-+. .-
T Consensus 229 ~gkCylrLg--------m~r~AekqlqssL~q~-~~--------~dTfllLskvY~ridQP~~AL~~~~~gld-----~f 286 (478)
T KOG1129|consen 229 MGKCYLRLG--------MPRRAEKQLQSSLTQF-PH--------PDTFLLLSKVYQRIDQPERALLVIGEGLD-----SF 286 (478)
T ss_pred HHHHHHHhc--------ChhhhHHHHHHHhhcC-Cc--------hhHHHHHHHHHHHhccHHHHHHHHhhhhh-----cC
Confidence 445677777 7888888886666666 33 68888888888888887777775533221 11
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhh
Q 000330 1148 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1227 (1652)
Q Consensus 1148 E~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~ 1227 (1652)
| +++.|..=-+-++.--|...+++.+ |..++|-+|.|+-++..-|+.||=
T Consensus 287 P-------------------------~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY-- 336 (478)
T KOG1129|consen 287 P-------------------------FDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFY-- 336 (478)
T ss_pred C-------------------------chhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeecccc--
Confidence 1 0122222222223333444455555 555666666666555544433332
Q ss_pred cCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHH
Q 000330 1228 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEAL 1303 (1652)
Q Consensus 1228 ~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL 1303 (1652)
-+..|-|+..|.++|++--.+.+| -|++-|-+.- +-+.+-|++|+
T Consensus 337 ----------------------------~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~---D~~L~sf~RAl 385 (478)
T KOG1129|consen 337 ----------------------------DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI---DLVLPSFQRAL 385 (478)
T ss_pred ----------------------------CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch---hhhHHHHHHHH
Confidence 125666777788888888888877 6777664443 46678889998
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000330 1304 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1383 (1652)
Q Consensus 1304 ~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1383 (1652)
+..-+..+ ..-+|+-|-..++.-||+..|.+-.+- +|-..+.+ ++
T Consensus 386 stat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrl-----------------aL~~d~~h----------~e------- 430 (478)
T KOG1129|consen 386 STATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRL-----------------ALTSDAQH----------GE------- 430 (478)
T ss_pred hhccCcch-hhhhhhccceeEEeccchHHHHHHHHH-----------------HhccCcch----------HH-------
Confidence 87654333 345899988889988888887765422 11111111 11
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC
Q 000330 1384 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1420 (1652)
Q Consensus 1384 q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~ 1420 (1652)
++-|++....-+|+..+|...|..|-..+|+
T Consensus 431 ------alnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 431 ------ALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred ------HHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 6666766666699999999999999988885
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.021 Score=48.32 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL 1040 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~ 1040 (1652)
+.|+.+|.-+...+ +++.|..+|+++|+.+|+++++|+.|+.
T Consensus 2 ~~~~~la~~~~~~G-----~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-----QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35666666666653 3477777777777777777777776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.037 Score=49.23 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.|++|+..|.++...+ |+. .++++.|+++|..+|++++|...+.++..
T Consensus 6 ~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRN-PDN-------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHT-TTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7999999999999999 566 89999999999999999999999988886
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=56.01 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000330 993 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1067 (1652)
Q Consensus 993 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1067 (1652)
.+.+...|...+.. |+|..|...|...+...|+ .+.+++.++..|+..+.-..+...|++-++..|.+-.
T Consensus 5 ~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 5 AEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 45666777777776 5689999999999999987 5688999999999999999999999999999998765
Q ss_pred -----HHHHHHhcCCCc---ccchhhHHHHHHHHHHhhhcCCCCcchhh----------hhhHHHHHHHHHHHHHhcCHH
Q 000330 1068 -----LWLMYINSRTPL---NHRLDAYDAALSVLCRCASASDGDEMHAS----------ACILDLFLQMLQCFCMSGNTE 1129 (1652)
Q Consensus 1068 -----LwlmYInsr~sl---ddrl~~YdkAI~aLe~las~~~~Dr~~~S----------a~iLDILL~LvqLY~qSGnyd 1129 (1652)
+++.|.+..... .-+.....+|+..|..+...+ |+-.+.. -.+-+--+...++|...|.|.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 334443332112 333445678999999999999 4422221 133333466788888899999
Q ss_pred HHHHHHHhhcc
Q 000330 1130 KAIQRISRLLI 1140 (1652)
Q Consensus 1130 KAI~ti~rLEq 1140 (1652)
.|+.+++.+..
T Consensus 159 aA~~r~~~v~~ 169 (203)
T PF13525_consen 159 AAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888888774
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.11 Score=56.76 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=94.4
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000330 991 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1067 (1652)
Q Consensus 991 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1067 (1652)
.+.+.|.+.-..-+..+.+ |.-...+.+..=+..|.++--+++.|+-.++..+|+-.+-++|.|+.
T Consensus 7 ~~~~~~~~~i~~al~~G~t-----------lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~ 75 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGAT-----------LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTM 75 (165)
T ss_pred hhHHHHHHHHHHHHHCCCC-----------HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4456677776777776654 66667788888888899999999999999999999999999998877
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000330 1068 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1135 (1652)
Q Consensus 1068 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1135 (1652)
|+..|.-.+ .|++|+.+|.-.+.-...| --+.+.+.+||.+-|+.++|+..+
T Consensus 76 GLaa~~Q~~k--------~y~~Ai~~Y~~A~~l~~~d--------p~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 76 GLAAVCQLKK--------QFQKACDLYAVAFTLLKND--------YRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHcccCC--------CCccchHHHHHHHhCCHHHHHHHH
Confidence 777888888 9999999997665544223 346899999999999999999944
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.14 Score=59.13 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1260 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1260 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
..+..-+-......|.|.++..++.-+.+.+-.+.+..+..+++...|+....+.. ++...++.|++..|+...++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~----~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA----QGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH----HHHHHHHhcchHHHHHHHHH
Confidence 34666777888899999999333333344433778889999999999998773322 68889999999998888755
Q ss_pred HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000330 1340 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1419 (1652)
Q Consensus 1340 ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1419 (1652)
+.+ ..| . ...++ ..+|.+|-+ -|+.++|..+|-+||+..|
T Consensus 126 -----------------A~~--l~p--~------d~~~~-----------~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 126 -----------------AAR--LAP--T------DWEAW-----------NLLGAALDQ--LGRFDEARRAYRQALELAP 165 (257)
T ss_pred -----------------Hhc--cCC--C------Chhhh-----------hHHHHHHHH--ccChhHHHHHHHHHHHhcc
Confidence 111 122 1 24456 778899999 9999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000330 1420 SEHFKHCVREHAMLLLINESEPKEGAP 1446 (1652)
Q Consensus 1420 ~N~~i~cLNNYAYFLS~e~~dL~KAeq 1446 (1652)
.+ -..+||.+|-+.+++. +.+|+.
T Consensus 166 ~~--p~~~nNlgms~~L~gd-~~~A~~ 189 (257)
T COG5010 166 NE--PSIANNLGMSLLLRGD-LEDAET 189 (257)
T ss_pred CC--chhhhhHHHHHHHcCC-HHHHHH
Confidence 99 8899999999998873 444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.71 Score=53.75 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHH
Q 000330 1208 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKAR 1285 (1652)
Q Consensus 1208 ~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAy 1285 (1652)
-.|+.++++.+--..|+... + ..-+..+-+.++-+... .+...-|....+++-..-|.+.-+ -|+|-+
T Consensus 26 rnseevv~l~~~~~~~~k~~-----~-----~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-----A-----LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-----c-----cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 46788888886534455431 0 12224444442222222 447777777888888888999999 899999
Q ss_pred HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccc
Q 000330 1286 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQV 1352 (1652)
Q Consensus 1286 L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~gia~~Q~-------------~~d 1352 (1652)
|+.+++-++|+..|+..|+.+|.|.. ++-.=|-....+|+--.||+-...|..-|.-.+. ...
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 99988888999999999999999988 4444466677777777888888887666655543 222
Q ss_pred cchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc---CHHHHHHHHHHHHhhccCC
Q 000330 1353 EISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN---DWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1353 eALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg---~~~EAfaAYDKALkanp~N 1421 (1652)
.|.=-+..-+ +..|.+- +.|.-+++.+|. +| ++.-|..-|++||+.+|.+
T Consensus 172 kA~fClEE~l---------------l~~P~n~--l~f~rlae~~Yt--~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 172 KAAFCLEELL---------------LIQPFNP--LYFQRLAEVLYT--QGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHH---------------HcCCCcH--HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhChHh
Confidence 2222222110 0111111 457788887776 55 4556778888888888865
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.035 Score=46.99 Aligned_cols=43 Identities=5% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHh
Q 000330 1032 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYIN 1074 (1652)
Q Consensus 1032 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYIn 1074 (1652)
+++|+.|+..|...|+..++.++|+++|+.+|+|...|.++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5789999999999999999999999999999999999988753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.25 Score=54.13 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=98.1
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCC-----------ch
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNS-----------VG 1050 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~-----------ee 1050 (1652)
+--.++.-.+.++.+|..+... |+|+.|...|.+-++.+|+++ .++|..+..++....+ ..
T Consensus 34 ~~P~s~~a~~A~l~la~a~y~~-----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~ 108 (203)
T PF13525_consen 34 RYPNSPYAPQAQLMLAYAYYKQ-----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRK 108 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHH
T ss_pred HCCCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHH
Confidence 3334455557888888877766 568999999999999999966 5788877776654322 24
Q ss_pred HHHHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000330 1051 KDDMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1109 (1652)
Q Consensus 1051 a~emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1109 (1652)
+...|+.-|+.-|++.. ++.+|.+.+ .|..|+.-+..+...+ |+ |-
T Consensus 109 A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~--------~y~aA~~r~~~v~~~y-p~----t~ 175 (203)
T PF13525_consen 109 AIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG--------KYKAAIIRFQYVIENY-PD----TP 175 (203)
T ss_dssp HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------HHHHHHHHHHHHHHS-TT----SH
T ss_pred HHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHC-CC----Cc
Confidence 77899999999998865 678888888 9999999999999999 55 35
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHH
Q 000330 1110 CILDLFLQMLQCFCMSGNTEKAI 1132 (1652)
Q Consensus 1110 ~iLDILL~LvqLY~qSGnydKAI 1132 (1652)
...|.+..|+..|..-|..+.|-
T Consensus 176 ~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 176 AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHH
Confidence 67899999999999999988443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.023 Score=46.47 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchH
Q 000330 1020 LLSRALEADPTSEILWITYLLIFYSNTNSVGK 1051 (1652)
Q Consensus 1020 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea 1051 (1652)
.|.+|||+||+++.+|+.|+.+|...|..+++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 37899999999999999999999988875544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.31 Score=59.42 Aligned_cols=185 Identities=18% Similarity=0.070 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1091 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1091 (1652)
+.|+.|.++=-+.|..|++++++.|.-..++|...+-..+...|++|+.++|+-+..-.+|..-+
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k--------------- 247 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK--------------- 247 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH---------------
Confidence 56799999999999999999999999999988888888899999999999999999888887666
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000330 1092 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1171 (1652)
Q Consensus 1092 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1171 (1652)
.|+..-.+ . .-...+|+|.+|-..+ ..|+.. +| +.+ .-++
T Consensus 248 ~le~~k~~---g----------------N~~fk~G~y~~A~E~Y----teal~i-dP--------------~n~--~~na 287 (486)
T KOG0550|consen 248 KLEVKKER---G----------------NDAFKNGNYRKAYECY----TEALNI-DP--------------SNK--KTNA 287 (486)
T ss_pred HHHHHHhh---h----------------hhHhhccchhHHHHHH----HHhhcC-Cc--------------ccc--chhH
Confidence 22222111 1 1234689999998844 333442 44 122 1122
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000330 1172 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1251 (1652)
Q Consensus 1172 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1251 (1652)
..|. . .+-+....++.+|++.- +..+++.||...-+++-- -+
T Consensus 288 klY~----n-ra~v~~rLgrl~eaisd---c~~Al~iD~syikall~r------------------------------a~ 329 (486)
T KOG0550|consen 288 KLYG----N-RALVNIRLGRLREAISD---CNEALKIDSSYIKALLRR------------------------------AN 329 (486)
T ss_pred HHHH----H-hHhhhcccCCchhhhhh---hhhhhhcCHHHHHHHHHH------------------------------HH
Confidence 2221 1 12334456777888876 677777777777777654 35
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcc
Q 000330 1252 CMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHD 1290 (1652)
Q Consensus 1252 ~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~ 1290 (1652)
|++++|+++.|++-|.++|+.-.+ +++ +|.-+-+..|+
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 677889999999999999999988 666 66666655553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.9 Score=51.77 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCC---------------CC---chHH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNT---------------NS---VGKD 1052 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~---------------~~---eea~ 1052 (1652)
+..+.+|.-++.. ++|+.|...|++.++.+|+++ .++|.++..+...+ +. ..+.
T Consensus 70 ~a~l~la~ayy~~-----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 70 QVQLDLIYAYYKN-----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 5556666666665 457999999999999999865 45666665432221 01 2356
Q ss_pred HHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000330 1053 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1111 (1652)
Q Consensus 1053 emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~i 1111 (1652)
+.|+.-|+.-|++-. ++-+|.+.+ .|..|+.-+..+...+ |+ |-..
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~--------~y~AA~~r~~~v~~~Y-p~----t~~~ 211 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG--------AYVAVVNRVEQMLRDY-PD----TQAT 211 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------chHHHHHHHHHHHHHC-CC----CchH
Confidence 889999999998876 566788877 8999999999999998 44 3456
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1112 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1112 LDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.|.|..|+.-|...|..+.|..++..|..
T Consensus 212 ~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 212 RDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999999999999999987776653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.11 Score=63.94 Aligned_cols=66 Identities=14% Similarity=-0.013 Sum_probs=58.7
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000330 1026 EADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1098 (1652)
Q Consensus 1026 EINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las 1098 (1652)
+.+|+.+++|+.++..|+..+..+++.++|++|++++|++. .++..|..++ .+++|+..|.++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG--------r~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE--------EGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999963 4999999998 77888888877766
Q ss_pred c
Q 000330 1099 A 1099 (1652)
Q Consensus 1099 ~ 1099 (1652)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 4
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.4 Score=59.87 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=80.2
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1084 (1652)
++.|+|..|...|..||.-+|+++.+|+..+..|...+....+..-++++++++|.....| ..+.-.+
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-------- 440 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-------- 440 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--------
Confidence 6789999999999999999999999999999999999999999999999999998776632 2222333
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHH
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM 1124 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~q 1124 (1652)
.|++|+++|.+..... |+. .+++-..-+++..
T Consensus 441 ~ydkAleay~eale~d-p~~-------~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD-PSN-------AEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhcC-chh-------HHHHHHHHHHHHH
Confidence 7999999998887776 554 4444444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.081 Score=41.26 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000330 1032 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 1032 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
|++|+.++.+|+..++-.++.+.|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.19 Score=45.29 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000330 1039 LLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1039 l~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1104 (1652)
..+|.+.+.-..+.+.++++++++|++.. .+.+|...+ .|.+|+..|++..+.. |+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~l~~~l~~~-p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG--------RYEEALEDLERALELS-PDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--------cHHHHHHHHHHHHHHC-CCc
Confidence 46778888889999999999999999988 456777777 8999999999999888 554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.67 Score=55.40 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000330 991 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1067 (1652)
Q Consensus 991 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1067 (1652)
.|.=+.|..++.++.|. ..||.++...|+..|.+....+..+.++-.+++-+++.++|..++++.|.|..
T Consensus 256 ~dTfllLskvY~ridQP-------~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-------ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred hhHHHHHHHHHHHhccH-------HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 34456677777778776 78999999999999999999999999999999999999999999999999888
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000330 1068 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1144 (1652)
Q Consensus 1068 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~ 1144 (1652)
...+|=+.- +-|+..|-+...---.. -+++.-+-=|-.-.+.||-++..+.|-+.+|.+
T Consensus 329 cia~~yfY~~~P----------E~AlryYRRiLqmG~~s--------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~ 390 (478)
T KOG1129|consen 329 CIAVGYFYDNNP----------EMALRYYRRILQMGAQS--------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ 390 (478)
T ss_pred eeeeccccCCCh----------HHHHHHHHHHHHhcCCC--------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC
Confidence 334555555 88888886654321011 345555554444556799999988887765553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.53 Score=57.28 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000330 1247 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1324 (1652)
Q Consensus 1247 LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1324 (1652)
+|+..|++-+.+..+|+..|.++|+..|.++.- .=--++|.+.. -+.|+..|++|+..+|.|.. +..||+.+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka----~~~el~~l~ 335 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKA----ARAELIKLK 335 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHH----HHHHHHHHH
Confidence 377777777889999999999999999999987 33334455554 77999999999999999998 998888877
Q ss_pred HHcCChHHHHHHHHHHHHhhhh
Q 000330 1325 LQNGRHDFAAELMDRWFHSVWK 1346 (1652)
Q Consensus 1325 l~~en~d~ai~Lc~~ff~gia~ 1346 (1652)
.+-..+... -+++|..++.
T Consensus 336 ~k~~~~~~k---ekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEK---EKKMYANMFA 354 (397)
T ss_pred HHHHHHHHH---HHHHHHHHhh
Confidence 654333332 2334555443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.64 Score=54.83 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHc---CChHHHHH
Q 000330 1260 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQN---GRHDFAAE 1335 (1652)
Q Consensus 1260 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~---en~d~ai~ 1335 (1652)
+.-+.+++++|+.+|.+..|++....+-.+-.+.+.+ .-|+.++...|++.. +|..||.+.... -.++.+..
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~----LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE----LWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHHhccCcHHHHHH
Confidence 4567899999999999999965544443332244444 899999999999999 999999988874 24556666
Q ss_pred HHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 000330 1336 LMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAAL 1415 (1652)
Q Consensus 1336 Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKAL 1415 (1652)
+..+.+..+....... ..++ .-..+ ....++..++..|.+.+--|-.+.|++++...|
T Consensus 124 ~y~~~l~~L~~~~~~~---------~~~~-------~~~~~------~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGR---------MTSH-------PDLPE------LEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHHHhhccc---------cccc-------cchhh------HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 5555443333222211 0011 00111 123355677777888888999999999998888
Q ss_pred hhcc
Q 000330 1416 KAAA 1419 (1652)
Q Consensus 1416 kanp 1419 (1652)
..|=
T Consensus 182 E~n~ 185 (321)
T PF08424_consen 182 EFNF 185 (321)
T ss_pred HHHc
Confidence 7764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.57 Score=48.57 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcc
Q 000330 1033 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM 1105 (1652)
Q Consensus 1033 eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~ 1105 (1652)
+++|+++..|-..|..+++...|++|++.-.+... |+..|.+.+ .|++|+.+|.+....+|.+-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDE- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCcc-
Confidence 45666666666666666666666666665444332 444555555 56666666666665552211
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000330 1106 HASACILDLFLQMLQCFCMSGNTEKAIQRI 1135 (1652)
Q Consensus 1106 ~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1135 (1652)
.+.. +.+++.| .+...|+++.|+..+
T Consensus 73 -~~~~-l~~f~Al--~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 73 -LNAA-LRVFLAL--ALYNLGRPKEALEWL 98 (120)
T ss_pred -ccHH-HHHHHHH--HHHHCCCHHHHHHHH
Confidence 1111 2233332 444556666666644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.2 Score=58.52 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHh--cCCCcccchhhHH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYIN--SRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYIn--sr~slddrl~~Yd 1087 (1652)
|+++.|+.+|..+ .+.|+.....++|..++....+..+++.+-+.+.++.- |+.-|++ .+ + ..|.
T Consensus 116 ~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g---~---e~~~ 184 (290)
T PF04733_consen 116 GDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG---G---EKYQ 184 (290)
T ss_dssp CHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT---T---TCCC
T ss_pred CCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC---c---hhHH
Confidence 6789999999875 67888888889999999999999999999999876665 4444444 44 1 2679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1088 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1139 (1652)
+|.-+|+++...++ .. ..++.-++-+..+.|+|+.|...|..-.
T Consensus 185 ~A~y~f~El~~~~~-~t-------~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 185 DAFYIFEELSDKFG-ST-------PKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHHCCS---S-------HHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC-CC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998883 33 6778899999999999999999765544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.1 Score=56.41 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=91.8
Q ss_pred hhhhccccHHHHHHHHHHHhcccc---cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000330 985 KLKQVELSNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1059 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1059 (1652)
-++..|.....|-.+|.-+..... ...+.+.+|...+.+++++ +|..+.+|..++......++.+++..+|++|+
T Consensus 368 Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl 447 (517)
T PRK10153 368 ILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI 447 (517)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344557777778777765544322 2235678888888888885 88899999999888888888999999999999
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHH
Q 000330 1060 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1132 (1652)
Q Consensus 1060 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI 1132 (1652)
+++| +.. ++..|.-.+ .+++|+..|.++..-.|.+. -+++.+=..+.-|++...
T Consensus 448 ~L~p-s~~a~~~lG~~~~~~G--------~~~eA~~~~~~A~~L~P~~p----------t~~~~~~~~f~~~~~~~~ 505 (517)
T PRK10153 448 DLEM-SWLNYVLLGKVYELKG--------DNRLAADAYSTAFNLRPGEN----------TLYWIENLVFQTSVETVV 505 (517)
T ss_pred HcCC-CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCc----------hHHHHHhccccccHHHHH
Confidence 9998 433 445555577 78999999999888774432 244445455555555433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=5.4 Score=49.96 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=88.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000330 1024 ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLDAYDAALSVLCRCASA 1099 (1652)
Q Consensus 1024 ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~~YdkAI~aLe~las~ 1099 (1652)
....+|.-.++||-.+.-++..++..++...+..-++.-|+|-|+| .+|+... .+.+|++.|.++.+.
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l 369 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALAL 369 (484)
T ss_pred HHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhc
Confidence 3344499999999999999999999999999999999999999965 5677777 789999999999998
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1100 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1100 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
. |+. .=+.+.+.+.|...|+.++||..|++..-
T Consensus 370 ~-P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 370 D-PNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred C-CCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 8 665 55778889999999999999999888874
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.5 Score=54.55 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1084 (1652)
.....|+.|.+-|.+||-+||+.+.-|..-+..|.+++.=+.+.+-|.+|+++.|+.-- |.+-.+.+.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-------- 92 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-------- 92 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc--------
Confidence 34678999999999999999999999999999999988888889999999999975433 555555566
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHh
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1125 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qS 1125 (1652)
.|+.||..|-++++-. .. +.=-..+|+..+|...--+-
T Consensus 93 ~~~eaI~~Lqra~sl~-r~--~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLL-RE--QPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred cccHHHHHHHHHHHHH-hc--CCCCCcchHHHHHHHHHhCc
Confidence 7889999987764432 00 00112377777776544333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.1 Score=41.25 Aligned_cols=34 Identities=0% Similarity=0.024 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000330 1032 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 1032 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
+.+|+.++.+|..++.-.++.+.|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5688899999999998888999999999998864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.7 Score=52.12 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=69.1
Q ss_pred HhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHH
Q 000330 1255 VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1333 (1652)
Q Consensus 1255 ~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~a 1333 (1652)
..+|..-|-..|...|...|++.-. .-+..||-..+....|+..|+.++..--+. + .-.+|.-.|.++-.=|++..|
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~-q-~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT-Q-LKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh-h-hhHHHHHHHHHHHhhcchHHH
Confidence 3446667777899999999988877 666667655543667889999888766665 1 123888889999999999999
Q ss_pred HHHHHHHHHhhhh
Q 000330 1334 AELMDRWFHSVWK 1346 (1652)
Q Consensus 1334 i~Lc~~ff~gia~ 1346 (1652)
+.|-++|+.-++.
T Consensus 522 ~sLe~rf~e~~pQ 534 (660)
T COG5107 522 YSLEERFRELVPQ 534 (660)
T ss_pred HhHHHHHHHHcCc
Confidence 9999998876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=4.6 Score=52.89 Aligned_cols=120 Identities=12% Similarity=-0.104 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC---HH-------HHHHHHhc
Q 000330 1011 LEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS---YA-------LWLMYINS 1075 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSa-----eaWy~yl~lY~~~~~~eea~emlekAVelnP~N---Y~-------LwlmYIns 1075 (1652)
.|+++.|...+.++++..|... .++..++.++...+...++..+|++|++..... +. ++.+|...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 3678999999999999766533 355667777888888888999999999764321 11 45566666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1076 RTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1076 r~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
+ .++.|+..+.+...... ... .+....-+...+..++...|+++.|+..+.+...
T Consensus 545 G--------~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 545 G--------FLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred C--------CHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 6 66777777766443210 010 0111111234567778888999999997666553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=2.7 Score=40.57 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhCCC--CHH-----HHHHHHhcCCCcccc
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEG--SYA-----LWLMYINSRTPLNHR 1082 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~-lY~~~~~~eea~emlekAVelnP~--NY~-----LwlmYInsr~slddr 1082 (1652)
.+.+..|+.++..+++.++.....+..+.. +|...+.-..+...|++|+..+|. .+. +..+|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 181 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG------ 181 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc------
Confidence 345789999999999999988766666666 788888888899999999887763 332 222223333
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1083 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1083 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.++.|+..+.+.....+... ...+..+...|...+.+++|+..+.....
T Consensus 182 --~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 --RYEEALELLEKALKLNPDDD-------AEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred --CHHHHHHHHHHHHhhCcccc-------hHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 78999999988888773312 67888889999999999999997766664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.5 Score=54.06 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=72.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHH
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~Yd 1087 (1652)
-.|+||+|++.|.-.||.||+..=+...-+.-+|--+....+++-|.+-.+-+|.+-. ||++.+.++ ++ =.
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~d-----P~ 183 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--LD-----PK 183 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--CC-----HH
Confidence 3477899999999999999986554444433333444566777777777777776544 655444333 22 12
Q ss_pred HHHHHHHHh-----------------------------hhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000330 1088 AALSVLCRC-----------------------------ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1133 (1652)
Q Consensus 1088 kAI~aLe~l-----------------------------as~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1133 (1652)
+|..-|-+. +.++..+++...-.+++..+++.+.|.+.|..+.|..
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 333333333 3333233444555678888888888888888888877
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.23 Score=38.69 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000330 1390 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1390 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
-.||.+++. .|++++|..+|++||..+|+|
T Consensus 5 ~~lg~~~~~--~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 5 YYLGQAYYQ--LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHCcCC
Confidence 578888888 999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.16 Score=38.70 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=25.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHhhhc
Q 000330 1606 SERFFKRALSVYPFSIKLWKCYYDLSK 1632 (1652)
Q Consensus 1606 ~~rfy~~AlsvyPfs~~LW~~y~~~~~ 1632 (1652)
++..|++|+...|.+..+|.+|+.|+.
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 488999999999999999999999975
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.84 E-value=22 Score=47.53 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=87.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1084 (1652)
+++++.+|+..+...|.-.|++.-+-..=+....+.+...++...+ .|++.-+.+.. |=..|-.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~~tLq~l~~~y~d~~-------- 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYGLKGTDDLTLQFLQNVYRDLG-------- 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhccCCCCchHHHHHHHHHHHHHh--------
Confidence 5678899999999999999998877665555556778777787544 45555555544 566788888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH---HHHhhc
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ---RISRLL 1139 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~---ti~rLE 1139 (1652)
.+++|..+|++....+ |. ++.++.++-.|.+-++|.++-+ .+++++
T Consensus 92 ~~d~~~~~Ye~~~~~~-P~--------eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKY-PS--------EELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred hhhHHHHHHHHHHhhC-Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999998 56 7899999999999999977555 344444
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.83 E-value=8.6 Score=50.76 Aligned_cols=278 Identities=10% Similarity=0.034 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 000330 1015 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1094 (1652)
Q Consensus 1015 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe 1094 (1652)
+.-+-.|..-+.+|+-+-.+...|..+.-..+..+.....=+.+++..|-+-+||+-|+..+.....-. .-..+...++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~-~~~~v~~~~e 174 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSE-ERKEVEELFE 174 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCc-chhHHHHHHH
Confidence 334444555566666666666666555556666666666666677777777788888877664333221 2233444444
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHH---HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000330 1095 RCASASDGDEMHASACILDLFLQMLQCFC---MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1171 (1652)
Q Consensus 1095 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~---qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1171 (1652)
.+...+ -+ .+-| +|+..+++.+-. .++.|++......+.+. ...-| ++ +--++.++.-.-|+.|||
T Consensus 175 kal~dy-~~---v~iw-~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~----s~g~~-~t-~G~~~we~~~E~e~~~l~ 243 (881)
T KOG0128|consen 175 KALGDY-NS---VPIW-EEVVNYLVGFGNVAKKSEDYKKERSVFERALR----SLGSH-IT-EGAAIWEMYREFEVTYLC 243 (881)
T ss_pred HHhccc-cc---chHH-HHHHHHHHhccccccccccchhhhHHHHHHHh----hhhhh-hc-ccHHHHHHHHHHHHHHHH
Confidence 443333 11 1111 344444444433 33556666664444443 11000 00 011112222222333444
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCC--------CcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000330 1172 CVYLVIYRKLPDAVLQLLECEKELFAIDWP--------PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1243 (1652)
Q Consensus 1172 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~--------y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1243 (1652)
..- -+.+-.-+-..+.++-......|. +..+..-.+++++.-... +.++. .+..+
T Consensus 244 n~~---~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~-~~~~~-------------e~~~q 306 (881)
T KOG0128|consen 244 NVE---QRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAK-ILFKF-------------ERLVQ 306 (881)
T ss_pred hHH---HHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHH-HHHHH-------------HHHhh
Confidence 441 011111111111111111111111 122222233444333222 12222 23333
Q ss_pred HhHH--HHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhHHH-HHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHH
Q 000330 1244 CFAV--NHIWCMAV----LNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQC 1315 (1652)
Q Consensus 1244 ~fKL--N~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL~L-~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~c 1315 (1652)
.++. .-+..||. .++.....-.+.+++...+.+.++|+ +++|+.+.- .+..+..++-.++..+|--.-
T Consensus 307 ~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd---- 382 (881)
T KOG0128|consen 307 KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD---- 382 (881)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH----
Confidence 3333 33566665 45888999999999999999999966 556653332 366777899999999988888
Q ss_pred HHHHHHHHHHH
Q 000330 1316 IWNQYVEYALQ 1326 (1652)
Q Consensus 1316 aW~QLIq~al~ 1326 (1652)
.|.+++ .|+.
T Consensus 383 L~~ral-lAle 392 (881)
T KOG0128|consen 383 LWKRAL-LALE 392 (881)
T ss_pred HHHHHH-HHHH
Confidence 666666 4443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.2 Score=39.33 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000330 1032 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 1032 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
+++|+.++.+|...+..+++.++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999999999999999999999999854
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=7.8 Score=45.62 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhH
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAY 1086 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~Y 1086 (1652)
++.+-|-..+.+...-.|+|.-+--..+.++-..+...++.++|+.-++=+|-|.. |+..-...+ +
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK-----~---- 136 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK-----N---- 136 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC-----c----
Confidence 44567777777777777888888888888888888888888888888888888877 443333333 1
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1087 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1087 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
-.||+.+-+....|..| .|.|..+.++|..-|.|+||+--+..+.-
T Consensus 137 l~aIk~ln~YL~~F~~D--------~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMND--------QEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 26777777777888667 78999999999999999999987777664
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.5 Score=58.82 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCCHHH
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGSYAL 1068 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP~NY~L 1068 (1652)
+.|..+|+.++--.-..+ .+..--.+|..||..+|+++.+|..-+...+... +-+.+.++|.++++.+|++..|
T Consensus 102 ~~D~~lW~~yi~f~kk~~-----~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKK-----TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred CCCHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 458899988765443332 1455557899999999999999999877665444 4667999999999999999999
Q ss_pred HHHHHhcCCC
Q 000330 1069 WLMYINSRTP 1078 (1652)
Q Consensus 1069 wlmYInsr~s 1078 (1652)
|--|.+.+-+
T Consensus 177 w~eyfrmEL~ 186 (568)
T KOG2396|consen 177 WKEYFRMELM 186 (568)
T ss_pred HHHHHHHHHH
Confidence 9999998833
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.4 Score=53.27 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=58.9
Q ss_pred hhhhccccHHHHHHHHHHHhcccc-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-----------C
Q 000330 985 KLKQVELSNEQCVEMALLILNQDA-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-----------S 1048 (1652)
Q Consensus 985 ~le~~~~d~qlWLelAl~~Lnq~~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-----------~ 1048 (1652)
.....|+|.+.+...+.-++.... .+..-+..|..-|+.||.|||+...+++-++..|+.++. -
T Consensus 17 ~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F 96 (186)
T PF06552_consen 17 AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF 96 (186)
T ss_dssp HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 566779999988887655544432 244679999999999999999999999999888875542 2
Q ss_pred chHHHHHHHHHhhCCCCHH
Q 000330 1049 VGKDDMFSYSVKHNEGSYA 1067 (1652)
Q Consensus 1049 eea~emlekAVelnP~NY~ 1067 (1652)
+.+.++|++||..+|.|..
T Consensus 97 ~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHhcCCCcHH
Confidence 2367889999999998753
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.6 Score=45.36 Aligned_cols=80 Identities=19% Similarity=0.096 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC---CHHHH----HHHHhcCCCcc
Q 000330 1011 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG---SYALW----LMYINSRTPLN 1080 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~---NY~Lw----lmYInsr~sld 1080 (1652)
.|+.+.|..+|.++|+..+.. ..+++.++..|...|..+++..+|+++++-.|+ +-.++ +...+.+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g---- 89 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG---- 89 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC----
Confidence 366799999999999986665 679999999999999999999999999998888 44443 4444445
Q ss_pred cchhhHHHHHHHHHHhhh
Q 000330 1081 HRLDAYDAALSVLCRCAS 1098 (1652)
Q Consensus 1081 drl~~YdkAI~aLe~las 1098 (1652)
.+++|++.+.....
T Consensus 90 ----r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 ----RPKEALEWLLEALA 103 (120)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 56777777755443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.3 Score=38.59 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000330 1389 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1389 fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
+-.+|.+++. .|++++|...|++||+.+|++
T Consensus 4 ~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 4 YYNLGNAYFQ--LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHH--hCCchHHHHHHHHHHHHCcCC
Confidence 3567888888 999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.37 Score=37.88 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000330 1389 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1389 fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
+-.+|.++.+ .|++++|...|++|++++|+|
T Consensus 4 ~~~lg~~y~~--~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQ--LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 3678999999 999999999999999999954
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.22 Score=40.83 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHH
Q 000330 1299 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1335 (1652)
Q Consensus 1299 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~ 1335 (1652)
|++||+++|+|+. +|+.|.......|++++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 7899999999999 99999999999999999863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.91 E-value=14 Score=48.98 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=113.9
Q ss_pred cccHHH-HHHHHHHHhcccc-cc-hhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCCchHHHHHHHHHh-
Q 000330 990 ELSNEQ-CVEMALLILNQDA-NK-LEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSVK- 1060 (1652)
Q Consensus 990 ~~d~ql-WLelAl~~Lnq~~-n~-~g~ydAALdLLsrALEINPtS-----aeaWy~yl~lY~~~~~~eea~emlekAVe- 1060 (1652)
++-.|+ .|+.|+.++.+.. .+ ..++-++...++-|+|+--+- -..||.|+.+.-.++.-+.++++||||=-
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 444443 5777877776653 11 333445555556666654332 34688888888888888889999998732
Q ss_pred ---------hCCCCH-------------HHHHHHHhcCCCcccchhhHHHHHHHHHHh-hhcCCCCcchhhhhh------
Q 000330 1061 ---------HNEGSY-------------ALWLMYINSRTPLNHRLDAYDAALSVLCRC-ASASDGDEMHASACI------ 1111 (1652)
Q Consensus 1061 ---------lnP~NY-------------~LwlmYInsr~slddrl~~YdkAI~aLe~l-as~~~~Dr~~~Sa~i------ 1111 (1652)
-+|... .-|--||.+..-.+..+..|..|...|+.. ...+ ..+.+-.|+|
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGD 966 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhccc
Confidence 223222 267789999877777777777777776431 0011 0111111111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhc--ccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHH-hhccchHHHh
Q 000330 1112 LDLFLQMLQCFCMSGNTEKAIQRISRLL--IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVI-YRKLPDAVLQ 1187 (1652)
Q Consensus 1112 LDILL~LvqLY~qSGnydKAI~ti~rLE--q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llr-YrvLPGd~y~ 1187 (1652)
.-.-+.+...|--.|++.+|+.-+-|-. .+|+-=+.|+++-=.-+-++|+.+.+.++-.+.-| +.- |-.--.-+|.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYH 1046 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYH 1046 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHH
Confidence 1233567777888888888887332221 12211111111111122344555555444433333 111 2111234577
Q ss_pred hhhhhhhhhccCCCCcc
Q 000330 1188 LLECEKELFAIDWPPVQ 1204 (1652)
Q Consensus 1188 q~e~~KEAf~I~W~y~~ 1204 (1652)
..|.--+|+.+...+++
T Consensus 1047 kAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred hhcchHHHHHHHHhhcc
Confidence 77877777777444443
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.22 Score=58.88 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHH-HHH-HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000330 1258 GLECSMNLLEKYIKLYPSCLELVLM-KAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1326 (1652)
Q Consensus 1258 Dse~A~~LfdklLk~~P~d~eL~L~-AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1326 (1652)
-....-+.|..+++.||.+++||++ +++ +......+.+++.|..+|..+|+++. +|..|.++++.
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~----iw~eyfr~El~ 188 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR----IWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch----HHHHHHHHHHH
Confidence 4456677999999999999999877 555 45555577888999999999999999 99999988773
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.12 E-value=1.9 Score=50.36 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=75.0
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000330 1035 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1107 (1652)
Q Consensus 1035 Wy~yl~lY~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1107 (1652)
.|..+.=++..+.-.++.+-|..=|+.-|++ |||+..|..++ .|++|..+|..+++.+ |+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~-P~---- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDY-PK---- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhC-CC----
Confidence 4444444445555566777777777777764 78999999999 9999999999999998 44
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1108 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1108 Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
|.+.-|.+|.+..+....|+.++|..||..+..
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456789999999999999999999999988874
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.80 E-value=6.9 Score=46.26 Aligned_cols=218 Identities=16% Similarity=0.085 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHH---hhc
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT---CLT 1161 (1652)
Q Consensus 1085 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~---YLt 1161 (1652)
+|-.+|..-+.-.... .+ .+...+|..-|...|.|.-.|+.| .+ |..+ -+..|+. |+.
T Consensus 23 nyq~~ine~~~~~~~~-~~--------~e~d~y~~raylAlg~~~~~~~eI--~~-----~~~~---~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSSK-TD--------VELDVYMYRAYLALGQYQIVISEI--KE-----GKAT---PLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHHHHHhhcccc-ch--------hHHHHHHHHHHHHccccccccccc--cc-----ccCC---hHHHHHHHHHHhh
Confidence 6677777654443332 22 566677777888999998877744 22 2232 2344443 333
Q ss_pred cCCc---chh----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCc
Q 000330 1162 ISDK---LIF----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1231 (1652)
Q Consensus 1162 ~sDR---~~A----WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~nde 1231 (1652)
...+ .++ |++..+ ....+.+-+-+|+..+-..+|+.. .-.....|---.-+.+...+.-...+.+
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~---~~~~~~lE~~Al~VqI~lk~~r~d~A~~-- 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKA---LHLGENLEAAALNVQILLKMHRFDLAEK-- 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2222 222 777777 667888889999999999999887 4443333322211111111111111011
Q ss_pred chhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhC
Q 000330 1232 SLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKW 1306 (1652)
Q Consensus 1232 sla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~ 1306 (1652)
.+..-+ ..-+...++-.++...-.-+..+.|-=.|..+=+.+|..+.+ -++...|.+.+ .++|..+++.||...
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhcc
Confidence 111111 233333344444444333335666666777777766666666 66677777776 889999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHcCChH
Q 000330 1307 PKGVPGIQCIWNQYVEYALQNGRHD 1331 (1652)
Q Consensus 1307 PkNa~g~~caW~QLIq~al~~en~d 1331 (1652)
|+.+. .-.-+|-.+...|.-+
T Consensus 238 ~~dpe----tL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 238 AKDPE----TLANLIVLALHLGKDA 258 (299)
T ss_pred CCCHH----HHHHHHHHHHHhCCCh
Confidence 99988 4444455555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.54 E-value=6.1 Score=38.19 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH-HHHhcCCCcccch
Q 000330 1011 LEGMKKALSLLSRALE--ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL-MYINSRTPLNHRL 1083 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALE--INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl-mYInsr~slddrl 1083 (1652)
.+.+..++..+..++. ..+....+|+.++.++...+.-..+.+.+..++...+.+.. ... .|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 144 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG------- 144 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC-------
Confidence 3556889999999998 89999999999999999998888899999999998877633 222 566666
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1084 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1084 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
.++.|+..|.+..... +. .......++.+...+...++++.|+..+.+...
T Consensus 145 -~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 145 -DYEEALELYEKALELD-PE----LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred -CHHHHHHHHHHHHhcC-CC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7899999998886633 31 001255666666668889999999997777774
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.41 E-value=75 Score=40.71 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCC
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEAD---PTS----EILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN---PtS----aeaWy~yl~lY~~~~-~~eea~emlekAVelnP~N 1065 (1652)
..=|.++..++.... +.+-|.+-|.+|+-+- |+. -.++..++++|.+.. .-..+..+++|||++.-.+
T Consensus 47 rt~LqLg~lL~~yT~----N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 47 RTHLQLGALLLRYTK----NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 344555544444433 2466666666665543 332 345667778887766 4555889999999998433
Q ss_pred -HH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHH--HHHHHHHHHHhc---CHHHHH
Q 000330 1066 -YA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL--FLQMLQCFCMSG---NTEKAI 1132 (1652)
Q Consensus 1066 -Y~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDI--LL~LvqLY~qSG---nydKAI 1132 (1652)
|| |+.+.+-++ .|+.|+++|+--++.. | +.++--+-+ ++.+.++..+.. ++.+++
T Consensus 123 p~wsckllfQLaql~~idk--------D~~sA~elLavga~sA--d--~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll 190 (629)
T KOG2300|consen 123 PYWSCKLLFQLAQLHIIDK--------DFPSALELLAVGAESA--D--HICFPYLRMLFTLSMLMLLIMERDDYDVEKLL 190 (629)
T ss_pred chhhHHHHHHHHHHHhhhc--------cchhHHHHHhcccccc--c--hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 33 666666677 7899999985444333 1 223322222 234455555554 467777
Q ss_pred HHHHhhcc
Q 000330 1133 QRISRLLI 1140 (1652)
Q Consensus 1133 ~ti~rLEq 1140 (1652)
+++..|++
T Consensus 191 ~~~~qi~~ 198 (629)
T KOG2300|consen 191 QRCGQIWQ 198 (629)
T ss_pred HHHHHHHh
Confidence 77777776
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.8 Score=52.89 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=71.7
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH-H
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY-D 1087 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y-d 1087 (1652)
.+...|++|+..=.++|+++|+++-++|.-+..+...++-+.|...|++|+++.|.|-..-.-++... .++..| +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~----~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK----QKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999988544444433 122233 5
Q ss_pred HHHHHHHHhhhcC
Q 000330 1088 AALSVLCRCASAS 1100 (1652)
Q Consensus 1088 kAI~aLe~las~~ 1100 (1652)
+...+|-+|.+..
T Consensus 344 kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 344 KEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHhhcc
Confidence 5588888887765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.68 E-value=21 Score=41.99 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000330 1211 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1288 (1652)
Q Consensus 1211 dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1288 (1652)
..+.+.++.|.+||.. +++.+.. .++ .+| ..+|.+ +|.-.+|+..|.++-..--.+--| |=+-.|+.+
T Consensus 131 ekaI~~YE~Aae~yk~---ees~ssA--NKC--~lK---vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 131 EKAIAHYEQAAEYYKG---EESVSSA--NKC--LLK---VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred HHHHHHHHHHHHHHcc---hhhhhhH--HHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 6788999999999974 4443332 111 122 334544 888899999999999988888777 555555544
Q ss_pred ccc-------CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1289 HDF-------GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1289 K~m-------~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
.+| +..+...+++-.+++|.=...-.|.+.-=+..++..+|.+.--+.+..
T Consensus 201 AgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 201 AGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred HHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 442 234457889999999999888999998888899999998887777766
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.51 Score=55.91 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1067 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1067 (1652)
.-|+.++|--+|.|||...|+.+.++.++..+---..+-.+++.+|-+|+.++|.|..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3477899999999999999999999999988865555566799999999999999987
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.28 E-value=1.4 Score=48.34 Aligned_cols=93 Identities=10% Similarity=-0.037 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1069 (1652)
Q Consensus 994 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1069 (1652)
+.--..|+...++ |+|+.|..+|....-.||.++.-|.-|+..+-.+++-+++.++|..|.-++++++. .+
T Consensus 38 e~iY~~Ay~~y~~-----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQ-----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 4455556666655 67899999999999999999999999999999999999999999999999988877 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000330 1070 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1099 (1652)
Q Consensus 1070 lmYInsr~slddrl~~YdkAI~aLe~las~ 1099 (1652)
.-|+..+ .-+.|+..|+.....
T Consensus 113 qC~l~l~--------~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMR--------KAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhC--------CHHHHHHHHHHHHhC
Confidence 9999999 779999999766653
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.82 Score=34.76 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000330 1013 GMKKALSLLSRALEADPTSEILWITYLLIF 1042 (1652)
Q Consensus 1013 ~ydAALdLLsrALEINPtSaeaWy~yl~lY 1042 (1652)
..+.|..+|.++++..|.++.+|..|+.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 467888899999999999999999988773
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.93 E-value=2.5 Score=47.82 Aligned_cols=107 Identities=17% Similarity=0.054 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHHhh-----hhccc---ccccchhh
Q 000330 1294 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFHSV-----WKVQY---SQVEISDP 1357 (1652)
Q Consensus 1294 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~--------ff~gi-----a~~Q~---~~deALDa 1357 (1652)
+.....++....+|++.= .+-+=++++.-+++.+++++|+..++. -|..+ +.+|. ..++|+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Y-a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIY-AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444555555544443 333336667777777777777777664 23332 33332 77788887
Q ss_pred hcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000330 1358 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1358 Lrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
|.....+ .+++ .++-+-||+|-. +|+.+||+.+|++||...+++
T Consensus 149 L~t~~~~-------~w~~-----------~~~elrGDill~--kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDTIKEE-------SWAA-----------IVAELRGDILLA--KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred Hhccccc-------cHHH-----------HHHHHhhhHHHH--cCchHHHHHHHHHHHHccCCh
Confidence 7732222 1111 234688999999 999999999999999986654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.88 E-value=2.2 Score=45.92 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--------HHHHHHhcCCCcccc
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHR 1082 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--------LwlmYInsr~slddr 1082 (1652)
.|.++.|+..|.++|.+-|..+.+|-.-++.|.-.+.++++++-+.+|++++-+--. -+++|--.+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g------ 129 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG------ 129 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC------
Confidence 478999999999999999999999999999999999999999999999999854432 455665555
Q ss_pred hhhHHHHHHHHHHhhhc
Q 000330 1083 LDAYDAALSVLCRCASA 1099 (1652)
Q Consensus 1083 l~~YdkAI~aLe~las~ 1099 (1652)
.-++|+.=|+.++.-
T Consensus 130 --~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 --NDDAARADFEAAAQL 144 (175)
T ss_pred --chHHHHHhHHHHHHh
Confidence 337888878766553
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.32 E-value=0.62 Score=55.38 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHhCCCCchHHHHHHHHHhhCCCCHHH
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY-LLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1068 (1652)
Q Consensus 990 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~y-l~lY~~~~~~eea~emlekAVelnP~NY~L 1068 (1652)
+.|.-.|..+|-=...- +-|...-+++..||..+|+++++|... ..-|.-.++-+....||.+++.+||++-.+
T Consensus 104 f~D~k~w~~y~~Y~~k~-----k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYVIKK-----KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 46778898877433333 346777889999999999999999884 444556677777999999999999999999
Q ss_pred HHHHHhcC
Q 000330 1069 WLMYINSR 1076 (1652)
Q Consensus 1069 wlmYInsr 1076 (1652)
|.-|.+.+
T Consensus 179 w~eyfr~E 186 (435)
T COG5191 179 WIEYFRME 186 (435)
T ss_pred HHHHHHHH
Confidence 99888877
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=86.73 E-value=0.56 Score=43.05 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000330 995 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD-------PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1062 (1652)
Q Consensus 995 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-------PtSaeaWy~yl~lY~~~~~~eea~emlekAVeln 1062 (1652)
.+..+|.-+... |+|+.|+..|.+||++- |.-+.+|+.++.+|..+++..++.++|++|++..
T Consensus 7 ~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYREL-----GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344445444433 66899999999999762 2346788889999999999999999999998753
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.50 E-value=77 Score=37.54 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=107.7
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000330 1070 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1149 (1652)
Q Consensus 1070 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~ 1149 (1652)
+-=++.+ .|++|+..|+.+-+++|-+ .+...+.+.+++-+-..|+|+.|+..++|... +-+.++
T Consensus 42 ~~~L~~g--------n~~~A~~~fe~l~~~~p~s-----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~- 105 (254)
T COG4105 42 LTELQKG--------NYEEAIKYFEALDSRHPFS-----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHP- 105 (254)
T ss_pred HHHHhcC--------CHHHHHHHHHHHHHcCCCC-----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCC-
Confidence 4456677 8999999999999998433 46689999999999999999999999999886 444333
Q ss_pred cchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000330 1150 SLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1228 (1652)
Q Consensus 1150 ~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ 1228 (1652)
.+.++-++= +..|..+ +|+ .-||.-+..=+...-+....|-
T Consensus 106 ----------------n~dY~~YlkgLs~~~~i-----------------~~~-----~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 106 ----------------NADYAYYLKGLSYFFQI-----------------DDV-----TRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred ----------------ChhHHHHHHHHHHhccC-----------------Ccc-----ccCHHHHHHHHHHHHHHHHHCC
Confidence 223333332 2222221 111 1122222111111112222222
Q ss_pred CCcchhhhh-----hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-----HHHHHHHhhcccCCccHHH
Q 000330 1229 NGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-----VLMKARLQKHDFGDLSSVG 1298 (1652)
Q Consensus 1229 ndesla~~~-----~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-----~L~AAyL~~K~m~~~A~sv 1298 (1652)
|.+=..... =......-=+...+.|..-+-...|++=|+.+++.+|+-... +|.-+|+.++ +.+.|-.
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg-l~~~a~~- 225 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG-LTDEAKK- 225 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC-ChHHHHH-
Confidence 211110000 000011111222334344668999999999999999998776 6666675543 3555544
Q ss_pred HHHHHHhCCCCCc
Q 000330 1299 FEEALIKWPKGVP 1311 (1652)
Q Consensus 1299 le~AL~~~PkNa~ 1311 (1652)
...+|..++-+.+
T Consensus 226 ~~~vl~~N~p~s~ 238 (254)
T COG4105 226 TAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhcCCCCc
Confidence 4778888877776
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.43 E-value=4.5 Score=46.28 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=79.1
Q ss_pred hhhhhhccccH--HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhCCCCchHHH
Q 000330 983 LNKLKQVELSN--EQCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEI-----LWITYLLIFYSNTNSVGKDD 1053 (1652)
Q Consensus 983 i~~le~~~~d~--qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSae-----aWy~yl~lY~~~~~~eea~e 1053 (1652)
+.-+|.-+.|. +.-++.|-.+=..+. .+-|.|..|..-|+.||++=|..+. +|..-+..+.+++..+.+.+
T Consensus 76 mae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 76 MAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 44555555553 445666654444332 5669999999999999999998654 44444556667777888999
Q ss_pred HHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000330 1054 MFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1054 mlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1104 (1652)
-|.+|++++|.+.. -+-.|-+.. .|+.|++=|-...... |.+
T Consensus 156 dcsKaiel~pty~kAl~RRAeayek~e--------k~eealeDyKki~E~d-Ps~ 201 (271)
T KOG4234|consen 156 DCSKAIELNPTYEKALERRAEAYEKME--------KYEEALEDYKKILESD-PSR 201 (271)
T ss_pred HHHhhHhcCchhHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHhC-cch
Confidence 99999999984443 345666655 7888888887777766 443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.37 E-value=39 Score=40.40 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000330 1254 AVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1311 (1652)
Q Consensus 1254 I~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~ 1311 (1652)
+.+++.++|..++..+|..++.+.+. .+.++.+.-|. ++..-.-+.+.....|+.+-
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd-~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD-AEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhcCCcchH
Confidence 44789999999999999999999998 66677665554 33233666778888887765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=85.67 E-value=2.7 Score=43.11 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1059 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1059 (1652)
.|+++.|..++.+++++||.+..+|..++..|...|...++.+.|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999888888887764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.6 Score=40.05 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---CCCCH-H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000330 1029 PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH---NEGSY-A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1097 (1652)
Q Consensus 1029 PtSaeaWy~yl~lY~~~~~~eea~emlekAVel---nP~NY-~-------LwlmYInsr~slddrl~~YdkAI~aLe~la 1097 (1652)
|+-+.++..++.+|...+.-.++.++|++|+++ -+++. . ++..|...+ .|++|++.|++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG--------DYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Confidence 455788999999999999999999999999955 22222 2 666677777 8899999887764
Q ss_pred h
Q 000330 1098 S 1098 (1652)
Q Consensus 1098 s 1098 (1652)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 3
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.25 E-value=56 Score=37.75 Aligned_cols=156 Identities=14% Similarity=0.035 Sum_probs=95.1
Q ss_pred hCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hhhhccc
Q 000330 1272 LYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH-SVWKVQY 1349 (1652)
Q Consensus 1272 ~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ff~-gia~~Q~ 1349 (1652)
.....++.||..+.+..+.+ ..-|...+.++....+........+...++++.|..|+...|+.+++.... .+.....
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 35555566888888766654 667888888888877544332233677889999999999999999988766 3333221
Q ss_pred -ccccchh-hhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHh----hhcCHHHHHHHHHHHHhhccCCcH
Q 000330 1350 -SQVEISD-PLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL----LQNDWNEARLAIDAALKAAASEHF 1423 (1652)
Q Consensus 1350 -~~deALD-aLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~----Lqg~~~EAfaAYDKALkanp~N~~ 1423 (1652)
.....+. .+-.....+.... ...+ ...+.--+|-.+|.-.... -.+..+++...|.+|++..|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-- 291 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTN----LDKE---SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-- 291 (352)
T ss_pred cccHHHHhhccccccccccccc----hhhh---hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--
Confidence 1000000 0000000000000 0000 0112223346666655553 4589999999999999999988
Q ss_pred HHHHHHHHHHHhc
Q 000330 1424 KHCVREHAMLLLI 1436 (1652)
Q Consensus 1424 i~cLNNYAYFLS~ 1436 (1652)
..+|..+|.|...
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 7799998888663
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.83 E-value=99 Score=38.65 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=67.2
Q ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000330 1009 NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1082 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1082 (1652)
+..|+++.|-.+|.++-|. |++=+ +....+.+-..++.-..+.+-...+.+..|.+-. .-..|+.++
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g------ 201 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLA-VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG------ 201 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc------
Confidence 4568889999999999998 44433 3334466666788778899999999999999998 448899999
Q ss_pred hhhHHHHHHHHHHhhhcC
Q 000330 1083 LDAYDAALSVLCRCASAS 1100 (1652)
Q Consensus 1083 l~~YdkAI~aLe~las~~ 1100 (1652)
+|...+.++..+.+..
T Consensus 202 --~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 202 --AWQALLAILPKLRKAG 217 (400)
T ss_pred --cHHHHHHHHHHHHHcc
Confidence 9999999999988864
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=84.63 E-value=8.4 Score=48.14 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HHHHHHhcCCCcc
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LWLMYINSRTPLN 1080 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------LwlmYInsr~sld 1080 (1652)
....+.|-.+|...++..|+++-..++-++++...++.+++.+.|++|+... +.+ ++|.|+-..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~~~~~~---- 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWCHMFQH---- 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHHHHHHc----
Confidence 4567899999999999999999999999999999999999999999998433 222 778888888
Q ss_pred cchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH-------HHHHHHHHhhc
Q 000330 1081 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT-------EKAIQRISRLL 1139 (1652)
Q Consensus 1081 drl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny-------dKAI~ti~rLE 1139 (1652)
.|++|...+.++...+.-.+ + =.-++..=+|.+.|+. ++|..-+.++-
T Consensus 320 ----~w~~A~~~f~~L~~~s~WSk-----a--~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 320 ----DWEEAAEYFLRLLKESKWSK-----A--FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred ----hHHHHHHHHHHHHhccccHH-----H--HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 89999999999877552222 1 1234445577778877 77777554444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=84.31 E-value=8.3 Score=39.61 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH
Q 000330 1013 GMKKALSLLSRALEADPTSE------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1086 (1652)
Q Consensus 1013 ~ydAALdLLsrALEINPtSa------eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y 1086 (1652)
.-..+...|.+++.+..... .-|..-..- ....++..|++ .+...|+..+ .|
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--------~l~~~~~~~~~------~l~~~~~~~~--------~~ 78 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--------RLRELYLDALE------RLAEALLEAG--------DY 78 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--------HHHHHHHHHHH------HHHHHHHHTT---------H
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--------HHHHHHHHHHH------HHHHHHHhcc--------CH
Confidence 34788888888888875421 234442222 12233333322 2556777888 89
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000330 1087 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1087 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1140 (1652)
++|+..+..+.... |-. ++++..++.+|...|++..|+..+.++..
T Consensus 79 ~~a~~~~~~~l~~d-P~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYD-------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHS-TT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999998 455 89999999999999999999998888763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.28 E-value=2.9 Score=52.16 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1088 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1088 (1652)
.+...|+.|.++|+.||+++|+.++.|-.-+..+.+.+.--+++.-+.+|++++|...- -|...+ +...++..|-+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K---~Y~rrg-~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK---AYVRRG-TAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh---eeeecc-HHHHhHHHHHH
Confidence 45678999999999999999999999999988888888888899999999999974332 222221 22333448899
Q ss_pred HHHHHHHhhhcCCCCc
Q 000330 1089 ALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1089 AI~aLe~las~~~~Dr 1104 (1652)
|+..|+..++.. |++
T Consensus 91 A~~~l~~~~~l~-Pnd 105 (476)
T KOG0376|consen 91 ALLDLEKVKKLA-PND 105 (476)
T ss_pred HHHHHHHhhhcC-cCc
Confidence 999999888887 554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.85 E-value=1.3e+02 Score=40.79 Aligned_cols=289 Identities=18% Similarity=0.147 Sum_probs=162.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------------CCCCchHHHHHHHHHhhC---CCCHHHHHHHHhc
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYS-------------NTNSVGKDDMFSYSVKHN---EGSYALWLMYINS 1075 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~-------------~~~~eea~emlekAVeln---P~NY~LwlmYIns 1075 (1652)
+++..-+.+..+.|+-++++ |..|...+.+ ..-.......-++|.+.- -.+-.|+++-+..
T Consensus 240 ~~w~~l~~l~~~Ll~k~~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~k 316 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGNDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDK 316 (932)
T ss_pred cChHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHH
Confidence 34556666677777777777 3333221111 111112334444444333 3344577777777
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHH
Q 000330 1076 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD 1155 (1652)
Q Consensus 1076 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsK 1155 (1652)
+-.+.++ .++++..| .+.+ +++ +-|..|+-.++..| +.++...-++++.. ..+ ..+
T Consensus 317 r~~~~gd---~ee~~~~y---~~kf-g~k---pcc~~Dl~~yl~~l-----~~~q~~~l~~~l~~-----~~~-~~s--- 372 (932)
T KOG2053|consen 317 RYKLIGD---SEEMLSYY---FKKF-GDK---PCCAIDLNHYLGHL-----NIDQLKSLMSKLVL-----ADD-DSS--- 372 (932)
T ss_pred HhcccCC---hHHHHHHH---HHHh-CCC---cHhHhhHHHhhccC-----CHHHHHHHHHHhhc-----cCC-cch---
Confidence 7644443 37888888 4445 343 44566766555444 34445555555553 221 111
Q ss_pred HHHhhccCCcchhhH------HHHHHHHhhccchHHHhhhh-hhhhhhccCCC-CcccchhhHHHHHHHHHHH----HHH
Q 000330 1156 ILTCLTISDKLIFWV------CCVYLVIYRKLPDAVLQLLE-CEKELFAIDWP-PVQLEDDEKQRAIKLIEMA----VNS 1223 (1652)
Q Consensus 1156 i~~YLt~sDR~~AWL------~~iYllrYrvLPGd~y~q~e-~~KEAf~I~W~-y~~vlk~EPdnalAL~smA----~dY 1223 (1652)
+|.++.|. +-.+.-.|-.||.+=....- +-+-.|.-+-. ...++.+|-.....+..+| +|.
T Consensus 373 -------~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~ 445 (932)
T KOG2053|consen 373 -------GDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL 445 (932)
T ss_pred -------hhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence 55555532 22234456666665444433 22222322111 3445556655553333333 456
Q ss_pred HhhhcCCcchhhhh---------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCchhHHHHHHHHhhcccCC
Q 000330 1224 VELYSNGESLEKET---------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY-IKLYPSCLELVLMKARLQKHDFGD 1293 (1652)
Q Consensus 1224 Y~~~~ndesla~~~---------~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl-Lk~~P~d~eL~L~AAyL~~K~m~~ 1293 (1652)
|+. +||+..--+. +....-.+|+-.||.|-.++-...|.++|+.+ +|.-+.|.-=-+...++..-++-.
T Consensus 446 ~rk-tnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~ 524 (932)
T KOG2053|consen 446 WRK-TNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSS 524 (932)
T ss_pred HHh-cCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccch
Confidence 665 6765522221 45556677888888887788888888888776 444444433366777777777777
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000330 1294 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1294 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~ai~Lc~~ 1339 (1652)
.+...+...+.+--++.. =.--||..|.+.|.|+++++...-
T Consensus 525 ~~s~~~~~~lkfy~~~~k----E~~eyI~~AYr~g~ySkI~em~~f 566 (932)
T KOG2053|consen 525 FASNTFNEHLKFYDSSLK----ETPEYIALAYRRGAYSKIPEMLAF 566 (932)
T ss_pred hHHHHHHHHHHHHhhhhh----hhHHHHHHHHHcCchhhhHHHHHH
Confidence 778888888877666655 445678889999999999887643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=81.26 E-value=4.5 Score=50.98 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HH----------HHHHh
Q 000330 1015 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LW----------LMYIN 1074 (1652)
Q Consensus 1015 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------Lw----------lmYIn 1074 (1652)
.+-..+=.+||+++|+-+.+|.-++.-. -.+..++.++|++||+....++. .| .+|++
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 4444445789999999999999987752 22345788999999988776665 11 26666
Q ss_pred cC-----CCcccchhhHHHHHHHHHHhhhcCCC-CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000330 1075 SR-----TPLNHRLDAYDAALSVLCRCASASDG-DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1075 sr-----~slddrl~~YdkAI~aLe~las~~~~-Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1139 (1652)
-+ |+++ ...+||..+-++.+-+|. |. +-|-..|+..+.-.+.|..+-..|.+..
T Consensus 263 rRLAmCarklG----r~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLG----RLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhC----ChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 55 1122 228899999999887744 34 5567788899999999999888666654
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.49 E-value=6.2 Score=46.32 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=79.7
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000330 996 CVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1072 (1652)
Q Consensus 996 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1072 (1652)
--..|+.++.. |+|+.|-..|..-+.-.|+ .+.++|-|+..|+.+++.+++-..|..+++-.|++-+.--++
T Consensus 144 ~Y~~A~~~~ks-----gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKS-----GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34455655544 5689999999999999999 578999999999999999999999999999999988844444
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000330 1073 INSRTPLNHRLDAYDAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1073 Insr~slddrl~~YdkAI~aLe~las~~~~D 1103 (1652)
++....+. ++-+-++|...|.+..+.+ |+
T Consensus 219 lKlg~~~~-~l~~~d~A~atl~qv~k~Y-P~ 247 (262)
T COG1729 219 LKLGVSLG-RLGNTDEACATLQQVIKRY-PG 247 (262)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHC-CC
Confidence 44332111 2226799999999999999 55
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.44 E-value=70 Score=40.64 Aligned_cols=167 Identities=13% Similarity=0.202 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000330 1020 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1097 (1652)
Q Consensus 1020 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~la 1097 (1652)
-|.--+.-||++.--||.|.++|-.+++-.+..+||++-. +|-.|. .|-.|+..+.-++ .|..--.+|.+..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~----df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARK----DFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhh----hHHHHHHHHHHHH
Confidence 4666788899999999999999988888888899999874 444444 9999999884443 3433334443333
Q ss_pred hcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch--------hh
Q 000330 1098 SASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI--------FW 1169 (1652)
Q Consensus 1098 s~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~--------AW 1169 (1652)
+.. -. +|+|..-+.- |.+++-+-. |-. + .-..+.|.-.-. |+ +|
T Consensus 104 ~k~--l~-------ldLW~lYl~Y----------IRr~n~~~t----Gq~-r---~~i~~ayefv~~-~~~~e~~s~~~W 155 (660)
T COG5107 104 KKS--LN-------LDLWMLYLEY----------IRRVNNLIT----GQK-R---FKIYEAYEFVLG-CAIFEPQSENYW 155 (660)
T ss_pred hhh--cc-------HhHHHHHHHH----------HHhhCcccc----cch-h---hhhHHHHHHHHh-cccccccccchH
Confidence 332 12 6666543332 232222211 100 0 111222222111 22 38
Q ss_pred HHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000330 1170 VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1225 (1652)
Q Consensus 1170 L~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~ 1225 (1652)
=-+.-.++|..-.+.|-.|..- ...=.+ |.+.+.+.=+|.-+|-.. ++..+
T Consensus 156 ~ey~~fle~~~~~~kwEeQqri-d~iR~~---Y~ral~tP~~nleklW~d-y~~fE 206 (660)
T COG5107 156 DEYGLFLEYIEELGKWEEQQRI-DKIRNG---YMRALQTPMGNLEKLWKD-YENFE 206 (660)
T ss_pred HHHHHHHHhccccccHHHHHHH-HHHHHH---HHHHHcCccccHHHHHHH-HHHHH
Confidence 7777789998888888755531 111123 334444444666666654 44444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 5e-14
Identities = 115/830 (13%), Positives = 228/830 (27%), Gaps = 298/830 (35%)
Query: 782 NQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLC 841
+ H+H +FE E D +++ + V ++ C D
Sbjct: 1 HHHHHHMDFETGEHQYQYKD------ILSVFEDAFVD--------NFDCKDVQD------ 40
Query: 842 MYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDI 901
+ + +E H+ + T LSK ++
Sbjct: 41 --MPKSILSKEEI--DHI------------------IMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 902 LTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDG 961
+ V ++L+ + Y+ + L + P S++
Sbjct: 79 V---QKFVE-EVLRIN-YK------------F---LMSPIKTEQRQP-------SMMTRM 111
Query: 962 RIECIGS-WNRQSSF---FRSRNGVLNKLKQVELSNEQCVEMALLILNQDAN-KLEGMK- 1015
IE +N F SR KL+Q ALL L N ++G+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNVLIDGVLG 160
Query: 1016 --K----ALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1069
K LS ++ +I W+ + + S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN-----------LKNCN-----------SPETV 198
Query: 1070 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 1129
L + L +++D + S ++
Sbjct: 199 LEMLQK---LLYQID------PNWTSRSDHSSNIKL---------------------RIH 228
Query: 1130 KAIQRISRLLIPATGSNDRHSLF-LSDI----------LTC---LTISDKLIFWVCCVYL 1175
+ RLL + L L ++ L+C LT K +
Sbjct: 229 SIQAELRRLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 1176 VIYRKLPDAVLQLLECE-KELFA--IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGES 1232
+ L + L E K L +D P D + + ++ + ES
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSII-----AES 336
Query: 1233 LEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG 1292
+ + H+ C + +E S+N+LE P+ + F
Sbjct: 337 IRDGLA-TWDN---WKHVNCDKLTTIIESSLNVLE------PA----------EYRKMFD 376
Query: 1293 DLSSVGFEE-ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQ 1351
L SV F A I P + + IW ++ + +L
Sbjct: 377 RL-SV-FPPSAHI--PTIL--LSLIWFDVIKSDVM----VVVNKLHKY------------ 414
Query: 1352 VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1411
S+ + + ++ L ++ + NE L
Sbjct: 415 --------------------------SLVEKQPKESTISIPSIYLELKVKLE-NEYAL-- 445
Query: 1412 DAALKAAASEHFKHCVREHAMLL---LINESEPKEGAPISWQLKLLNSY--------LDR 1460
H ++ I ++ + + L+ Y L
Sbjct: 446 ------------------HRSIVDHYNIPKTFDSDDLIPPY----LDQYFYSHIGHHLKN 483
Query: 1461 ARSLPYLKLLPRQFINNIERPR-LQQLIDNLLSPVSSDFSLVNLVLEV-CYGPSLL---P 1515
+ L F++ R L+Q I + + ++ S++N + ++ Y P + P
Sbjct: 484 IEHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 1516 RNFSKLKDLVDFVEGIME-IVPSNY----QLAFSVFKLLNKDHNPNITDA 1560
+ + ++DF+ I E ++ S Y ++A L + +A
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIA------LMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 6e-13
Identities = 96/740 (12%), Positives = 215/740 (29%), Gaps = 211/740 (28%)
Query: 737 YHSKGNKFPTT-MNHSTSVLLSPPILRGAF------GHLKSELCIALSNQSGNQHNHGRN 789
+H F T + +L + AF ++ LS +
Sbjct: 2 HHHHHMDFETGEHQYQYKDIL--SVFEDAFVDNFDCKDVQDMPKSILSKE---------- 49
Query: 790 FEIEEVACVNSDKTQACYLI---ANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELR 846
EI+ + + L + + ++V+ +V + + + M ++
Sbjct: 50 -EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---------VLRINYKFLMSPIK 99
Query: 847 GKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPT 906
+ Y R++ L++D+ + + Q + + L + L P
Sbjct: 100 TEQRQPSMM--TRMYIEQRDR-LYNDNQVFA-KYNVSRLQPYLKLRQALLE----LRPAK 151
Query: 907 YIV-------GLDILKADSYQYQSVIARR-HGLCWQKCLSVSLAISSIYPKDLPADL-SL 957
++ G + D V + + W L++ S P+ + L L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNCNS---PETVLEMLQKL 205
Query: 958 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEM---ALLILN--QDANKLE 1012
+ +I+ +W +S + ++ ++ EL + LL+L Q+A
Sbjct: 206 LY--QIDP--NWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 1013 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1072
+ + +IL T F T+ + S+ H+ +
Sbjct: 261 AF-------------NLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTL------ 298
Query: 1073 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1132
TP D S+L + D L ++L +
Sbjct: 299 ----TP--------DEVKSLLLKYLDCRPQD----------LPREVLTTNPR------RL 330
Query: 1133 QRISRLLI--PATGSN------DRHSLFLSDILTCLTISD-KLIFWVCCVYLVIYR---K 1180
I+ + AT N D+ + + L L ++ + +F L ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAH 386
Query: 1181 LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1240
+P +L L+ W V D + VN + YS +EK+
Sbjct: 387 IPTILLSLI----------WFDVIKSDVM---------VVVNKLHKYS---LVEKQPKES 424
Query: 1241 SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFE 1300
+ + + Y++L + + +
Sbjct: 425 TIS------------IPSI---------YLELKVKLENEYALHRSI-------VDHYNIP 456
Query: 1301 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSV-W---KVQYSQVEISD 1356
+ P + + ++ + L+N H L F + K+++ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 1357 P-----LVADM----SHSSPESTSTSDPEFSVSNRNQMDVMFG---------YLNLSLHR 1398
+ + + +DP++ +D + Y +L L
Sbjct: 517 SGSILNTLQQLKFYKPYICD-----NDPKYERLVNAILDFLPKIEENLICSKYTDL-LRI 570
Query: 1399 LLQNDWNEARLAIDAALKAA 1418
L + +EA + +A +
Sbjct: 571 ALMAE-DEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-11
Identities = 90/605 (14%), Positives = 171/605 (28%), Gaps = 177/605 (29%)
Query: 668 EPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPE-----RRIQEAPFQIQD 722
+ + S E+ Q + + I+ +
Sbjct: 57 SKDAVSGTLRLFWT---------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQ 104
Query: 723 KCLVEKGLLEFHSTYHSKGNKF-------PTTMNHSTSVL--LSPP---ILRGAFGHLKS 770
++ + +E ++ F L L P ++ G G K+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 771 ELCIALSNQSGNQHNHGRNFEIE--EVACVNSDKT-----QA-CYLIA---NSKPDIVKG 819
+ + + Q +F+I + NS +T Q Y I S+ D
Sbjct: 165 WVALDVCLSYKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 820 YVGK--EMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAG 877
+ + + L + C+ L + + F NL
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNAF-----NL-------S 265
Query: 878 CQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCL 937
C+I L + T + D L A + + S+ L +
Sbjct: 266 CKI--------------L-----LTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 938 SVSLAISSIYPKDLPAD--------LSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQV 989
S+ L P+DLP + LS+I + + + +W+ ++ N +KL +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVN--CDKLTTI 358
Query: 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD---PTS--EILWITYLLIFYS 1044
E + + + M LS+ PT ++W F
Sbjct: 359 ---IESSLN------VLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIW------FDV 399
Query: 1045 NTNSVGK--DDMFSYSV--KHN-EGSYALWLMYINSRTPLN-----HR--LDAYDAALSV 1092
+ V + + YS+ K E + ++ +Y+ + L HR +D Y+ +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 1093 LCRCASASDGDEM-------HASAC------------ILDL-FLQMLQCFCMSGNTEKAI 1132
D+ H LD FL+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--------------- 504
Query: 1133 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQ-LLEC 1191
Q+I + S + + L L I C Y +L +A+L L +
Sbjct: 505 QKIRH-----DSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKI 555
Query: 1192 EKELF 1196
E+ L
Sbjct: 556 EENLI 560
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 102/718 (14%), Positives = 188/718 (26%), Gaps = 255/718 (35%)
Query: 403 NVDIQSLLDMEE--LLDKELEE-------AQEHRRICEIEERKALKAYRKAQRALIEAN- 452
N D + + DM + L +E++ R+ K + +K ++ N
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 453 ----ASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQ------------HETLGN---EF 493
+ RQ + + + + L++ Q + L E
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 494 DLSKHV-------SGNMHLA-----PTSTHQMQSGYVGY-NQGGYDSSMQCINGDLQNFS 540
+K+V SG +A + + N +S + LQ
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLL 206
Query: 541 H--------EHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEE 592
+ ++ N+ S Q L + +N L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------------------- 247
Query: 593 ACQLDLESVQ-PN----FEYQQKDQIAEGRQIS-TDYRHNNKLSAVSS---QDPLLLEAT 643
L L +VQ F K + R TD+ + +S L +
Sbjct: 248 ---LVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 644 LRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDI 703
L + + P
Sbjct: 304 K--SLLLK------------YLDCRPQ--------------------------------- 316
Query: 704 GGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTY----HSKGNKFPTTMNHSTSVLLSPP 759
D P + P ++ ++ + + + +T+ H +K T + S +V L P
Sbjct: 317 ---DLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPA 369
Query: 760 ILRGAFGHLKSELCIALSNQSGNQHNHGRNFE----I-EEVACV--NSDKTQACYLIANS 812
R F L + F I + + ++ N
Sbjct: 370 EYRKMF----DRLSV---------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 813 KPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHD- 871
V K+ T ++ P EL+ K N+ LH
Sbjct: 411 --LHKYSLVEKQPKESTISI------PSIYLELKVKLENE--------------YALHRS 448
Query: 872 --DSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRH 929
D + IP+ + D++ P D Y Y I H
Sbjct: 449 IVDHYN--------IPKTFDS--------DDLIPPY----------LDQYFYSH-IG-HH 480
Query: 930 GLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGS-WNRQSSFFRSRNGVLNKLKQ 988
+ ++L ++ D + + +I + WN S +LN L+Q
Sbjct: 481 LKNIEHPERMTL-FRMVF-----LDFRFL-EQKIRHDSTAWNASGS-------ILNTLQQ 526
Query: 989 VEL----------SNEQCVEMALL--ILNQDANKLEGMKKALSLLSRALEADPTSEIL 1034
++ E+ V A+L + + N + K LL AL I
Sbjct: 527 LKFYKPYICDNDPKYERLVN-AILDFLPKIEENLICS--KYTDLLRIALM-AEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-05
Identities = 83/621 (13%), Positives = 167/621 (26%), Gaps = 203/621 (32%)
Query: 57 SFSDDDSGSDTEDYRHKTAFENKSNTTRVDG-SGRPPTSSAVKV---KNLQQTARNVSKA 112
+F D+ D +D K+ + +D S L + V K
Sbjct: 28 AFVDNFDCKDVQDMP-KSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 113 IPKKLSPSRTLTTTRNHGGANSWV-------SRPPS------VDQRSRVRNFSIKTKLGS 159
+ + L N+ ++ R PS ++QR R+ N
Sbjct: 83 VEEVLRI--------NYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYN--------- 121
Query: 160 LECGDQVGLRNSKLQDLRQQ--IALRESELKLKAAQQ---------NKD-LVIDSCENY- 206
+QV +K R Q + LR++ L+L+ A+ K + +D C +Y
Sbjct: 122 ---DNQV---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 207 ------------HLGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPE 254
+L + E + L+ +++ + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTS---------RSDHSSNI 223
Query: 255 RSSLQDGNKVDR---SQKDIPRSRIESEIVK--WDKQNVANPNASC-------NQSDRDS 302
+ + R K + ++ + + N SC + D
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 303 RRVNTGPVLHNTSQLANMTSSN----FLKNAERIESDPASTAAGCHP---SSFLSNATRE 355
T + +T LK + D +P S A
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---AESI 337
Query: 356 QNVMENSEYTKAISGDKID---GPSFNNV----HQVNTASLGNFSGNGNVS--------- 399
++ + + K ++ DK+ S N + ++ L F + ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 400 GNSNVDIQ---------SLLDME-------------ELLDKELEEAQEHRRICEIEERKA 437
D+ SL++ + EL K E HR I ++
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNI 455
Query: 438 LKAY----------------------RKAQRALIEANASCTKLYRQRELCSARFRSFVMD 475
K + + + E ++ + R D
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVFLDFRFLEQKIRH---D 510
Query: 476 DSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGD 535
+ S TL L + Y+ N Y+ + +N
Sbjct: 511 STAWNASGSILNTLQ---QLKFY----------------KPYICDNDPKYE---RLVN-A 547
Query: 536 LQNFSHEHENGQNLGSEPCSE 556
+ +F + E +NL ++
Sbjct: 548 ILDFLPKIE--ENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 5e-04
Identities = 57/402 (14%), Positives = 121/402 (30%), Gaps = 115/402 (28%)
Query: 56 ISFSDDDSGSDTEDYRHKTAFENKSN-TTRVDGSGRPPT---SSAVKVKNLQQTA----- 106
++ + +S + K ++ N T+R D S S +++ L ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 107 ----RNV-SKAIPKKLSPS-RTLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSL 160
NV + + S + L TTR + + + + S+ +L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--------ATTTHISLDHHSMTL 298
Query: 161 ECGDQVGL----RNSKLQDLRQQIALRESELKLKAAQQNKDLVIDSCENYHLGRLDQ-KE 215
+ L + + QDL ++ L + +L ++ +S + L D K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLS-------IIAESIRD-GLATWDNWKH 349
Query: 216 PDKKRLK--VSGSYSHRLTTDGRQ------------DIPA-------------------- 241
+ +L + S + + R+ IP
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 242 ---TKSTVPVKEPTPERSSL----QDGNKVDRSQKDIPRSRIES--EIVKWDKQNVANPN 292
S V K+P S+ + ++ + RS ++ +D ++ P
Sbjct: 410 KLHKYSLV-EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 293 -------------ASCNQSDRDS--RRV------------NTGPVLHNTSQLANMTSSNF 325
+ +R + R V + + + + N
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-- 526
Query: 326 LKNAER--IESDPASTAAGCHPSSFLSNATREQNVMENSEYT 365
LK + ++DP FL E+N++ S+YT
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKI--EENLI-CSKYT 565
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 44.7 bits (104), Expect = 2e-04
Identities = 35/471 (7%), Positives = 120/471 (25%), Gaps = 60/471 (12%)
Query: 1006 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKD---DMFSYSVKHN 1062
+ L+ K+ + + P +W L + + + + + +
Sbjct: 74 KHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133
Query: 1063 EG--SYALWLM---YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQ 1117
G +LWL Y+ + + + + + S + +L
Sbjct: 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193
Query: 1118 MLQCFCMSGNTEKAIQRISR--------LLIPATGSNDRHSLFLSDILTCL-TISDKLIF 1168
L+ + E+ QR+ L P + + + I
Sbjct: 194 FLEHWKPVNKFEEQ-QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIG 252
Query: 1169 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE-KQRAIKLIEMAVNSVEL- 1226
+ Y+ D + ++ L + + + ++ + + + +
Sbjct: 253 ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWE 312
Query: 1227 YSNGESLEKETNLRSAHCF---AVNHI------------WCMAVLNGLECSMNLLEKYIK 1271
N L + + A H+ + L+ +
Sbjct: 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372
Query: 1272 LYPSCLELVLMKARL--QKHDFGDLSSVGFEEALIKWPKGV------------------P 1311
P+ L + ++ + + + +
Sbjct: 373 CIPNSAVLAFSLSEQYELNTKIPEIETT-ILSCIDRIHLDLAALMEDDPTNESAINQLKS 431
Query: 1312 GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTS 1371
+ ++ Y+ + + ++ + V + + + + ++
Sbjct: 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP-DIYLENAYIEYHISKDTKTAC 490
Query: 1372 TSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH 1422
+ + YL+ ++ N+ ++ + ++++ + H
Sbjct: 491 KVLELGLKYFATDGEYINKYLDFLIY---VNEESQVKSLFESSIDKISDSH 538
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1652 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.78 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.46 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.32 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.21 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.18 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.08 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.9 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.68 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.58 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.45 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.22 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.7 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.24 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.18 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 86.63 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7e-21 Score=153.91 Aligned_cols=363 Identities=13% Similarity=0.044 Sum_probs=247.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHH
Q ss_conf 99999873003554455999999999999829999899999999997288971289999999850998899----99999
Q 000330 997 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMY 1072 (1652)
Q Consensus 997 LelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmY 1072 (1652)
|++|..++. .|+|+.|...|..+++.+|+++.+|+.++.+|...+..+++.+.|++|++.+|.+.. ++..|
T Consensus 3 l~la~~~~~-----~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 77 (388)
T d1w3ba_ 3 MELAHREYQ-----AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77 (388)
T ss_dssp CTHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999998-----699999999999999868998999999999999869999999999999985999899999999996
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 83589766412359999999998620399993012120379999999998770689999999996305224999964230
Q 000330 1073 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1152 (1652)
Q Consensus 1073 Insr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lS 1152 (1652)
...+ .|++|+..+....... +.. .+........+...+.+..+......... ...... ...
T Consensus 78 ~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 138 (388)
T d1w3ba_ 78 KERG--------QLQEAIEHYRHALRLK-PDF-------IDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLY-CVR 138 (388)
T ss_dssp HHHT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCT-HHH
T ss_pred HHHC--------CCCCCCCCCCCCCCCC-CCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-CCC
T ss_conf 4200--------0222222222121122-222-------22222222222222222222222111222--222222-222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-------HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999986412773205688889-------998501606798620112332216899865531237889999999998886
Q 000330 1153 LSDILTCLTISDKLIFWVCCVY-------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1225 (1652)
Q Consensus 1153 LsKi~~YLt~sDKc~AWL~~iY-------llrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~ 1225 (1652)
......+........+.....- .......+|..+...+..++|... +.+.++.+|+++.++..+| ..|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~l~-~~~~ 214 (388)
T d1w3ba_ 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH---FEKAVTLDPNFLDAYINLG-NVLK 214 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHH---HHHHHHHCCCCHHHHHHHH-HHHH
T ss_conf 22222221100013567888874025861068998636301024719999999---9999984946499999971-5522
Q ss_pred HHCCCCCHHHHHHHCHHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHH
Q ss_conf 302884023433110136------867789999997139799999999999939984148--989999851026875099
Q 000330 1226 LYSNGESLEKETNLRSAH------CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSV 1297 (1652)
Q Consensus 1226 ~~~ndEsla~~~~~kt~~------~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Ais 1297 (1652)
. .++-+.+.....+... ..-.++...+...++.+.|+..|.++++..|.+++. .+...+...++ ..+|+.
T Consensus 215 ~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~ 292 (388)
T d1w3ba_ 215 E-ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAED 292 (388)
T ss_dssp T-TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHH
T ss_conf 0-05299999999985777554799999999999987899999999999998499989999999999997487-999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999982999983378999999999997399479999999999965010256111201110268999999999998522
Q 000330 1298 GFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEF 1377 (1652)
Q Consensus 1298 vle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDf 1377 (1652)
.|+.++...|.+.. .|..+.......++++.|+...++.+ . +.++ ..+.
T Consensus 293 ~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al-----------------~-----~~p~-----~~~~ 341 (388)
T d1w3ba_ 293 CYNTALRLCPTHAD----SLNNLANIKREQGNIEEAVRLYRKAL-----------------E-----VFPE-----FAAA 341 (388)
T ss_dssp HHHHHHHHCTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHT-----------------T-----SCTT-----CHHH
T ss_pred HHHHHHCCCCCCCH----HHHHHHHHHHHCCCHHHHHHHHHHHH-----------------H-----HCCC-----CHHH
T ss_conf 99865404873001----01579999998789999999999999-----------------8-----6889-----8999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 2233221135779999999985204989999999999711027708999999898881
Q 000330 1378 SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1435 (1652)
Q Consensus 1378 y~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1435 (1652)
+ ..+|.+|+. .|++++|..+|++||+.+|++ ..++.+.+.-+.
T Consensus 342 ~-----------~~la~~~~~--~g~~~~A~~~~~~al~l~P~~--~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 342 H-----------SNLASVLQQ--QGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLK 384 (388)
T ss_dssp H-----------HHHHHHHHT--TTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 9-----------999999998--599999999999999709998--999999999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.9e-16 Score=121.01 Aligned_cols=89 Identities=9% Similarity=0.042 Sum_probs=79.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999997288971289999999850998899----99999835897664123599999999986203999930121203
Q 000330 1036 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1111 (1652)
Q Consensus 1036 y~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~i 1111 (1652)
+.++..+++.|+-.++...|+++++.+|.+.. ++..|...+ .|++|+..|.++.+.+ |+.
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~-p~~------- 66 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR--------RLDRSAHFSTLAIKQN-PLL------- 66 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------
T ss_conf 999999998699999999999999868998999999999999869--------9999999999999859-998-------
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 79999999998770689999999996305
Q 000330 1112 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1112 LDILL~LvqLY~qSGnydKAI~tl~rLEq 1140 (1652)
.+++..+..+|...|++++|+..+.....
T Consensus 67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~ 95 (388)
T d1w3ba_ 67 AEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999996420002222222221211
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=3.6e-13 Score=102.42 Aligned_cols=264 Identities=13% Similarity=0.078 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 08999999998730035---544559999999999998299998999999999972889712899999998509988999
Q 000330 992 SNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1068 (1652)
Q Consensus 992 d~elWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~L 1068 (1652)
..++|++++..--.... ......+.+..+|.+||...|.++++|+.|+.+.-..++ ...+..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~---------~~~~~~------ 71 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK---------LLAEKG------ 71 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHHHTS------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---------HHHHHH------
T ss_conf 99999999999876865433220369999999999998777999999999999987073---------688777------
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99998358976641235999999999862039999301212037999999999877068999999999630522499996
Q 000330 1069 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1148 (1652)
Q Consensus 1069 wlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1148 (1652)
.+..... .+++|+.+|+++...++|.. ..+|+..+.++...|+++.|+..+.+++. ..+
T Consensus 72 -~~~~~~~--------~~~~a~~i~~ral~~~~p~~-------~~l~~~ya~~~~~~~~~~~a~~i~~~~l~-----~~~ 130 (308)
T d2onda1 72 -DMNNAKL--------FSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLA-----IED 130 (308)
T ss_dssp -CCHHHHH--------HHHHHHHHHHHHHTTTTTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SSS
T ss_pred -HHHHCCC--------CHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHC
T ss_conf -8763102--------45999999999998749987-------99999999999861338999999999998-----715
Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42308999986412773205688889-99850160679862011233221689986553123788999999999888630
Q 000330 1149 HSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1227 (1652)
Q Consensus 1149 ~~lSLsKi~~YLt~sDKc~AWL~~iY-llrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~ 1227 (1652)
.+...+|+.++. ..+.+.. +.+..++..|.....
T Consensus 131 --------------~~~~~~w~~~~~~~~~~~~~-----------------------------~~ar~i~~~al~~~~-- 165 (308)
T d2onda1 131 --------------IDPTLVYIQYMKFARRAEGI-----------------------------KSGRMIFKKAREDAR-- 165 (308)
T ss_dssp --------------SCTHHHHHHHHHHHHHHHCH-----------------------------HHHHHHHHHHHTSTT--
T ss_pred --------------CCHHHHHHHHHHHHHHCCCH-----------------------------HHHHHHHHHHHHHCC--
T ss_conf --------------78699999999999982786-----------------------------889999999998088--
Q ss_pred CCCCCHHHHHHHCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHH
Q ss_conf 28840234331101368677899999-97139799999999999939984148989999851026-87509999999982
Q 000330 1228 SNGESLEKETNLRSAHCFAVNHIWCM-AVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIK 1305 (1652)
Q Consensus 1228 ~ndEsla~~~~~kt~~~tKLN~Ir~l-I~LEDse~A~~LfdklLk~~P~dveL~L~AAyL~~K~m-~~~Aisvle~AL~~ 1305 (1652)
.....+ +...... ....+.+.++.+|.++++.+|.++++|+..+.+....+ .+.++.+|++++..
T Consensus 166 ------------~~~~~~-~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 166 ------------TRHHVY-VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp ------------CCTHHH-HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred ------------CCHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------------867999-9999999876557789999999999861003889999999999869868999999999982
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998337899999999999739947999999999996501025
Q 000330 1306 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY 1349 (1652)
Q Consensus 1306 ~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~ 1349 (1652)
+|.+..-..-+|..+++++...|+.+.+..+-++....++....
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 78986899999999999999849999999999999987711022
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.2e-13 Score=105.59 Aligned_cols=248 Identities=14% Similarity=0.061 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----
Q ss_conf 0899999999873003554455999999999999829999899999999997288971289999999850998899----
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1067 (1652)
Q Consensus 992 d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~---- 1067 (1652)
+.+.+++.|..++..+ +++.|...|.++|+.+|+++.+|+.++.+|...+....+..+|.+|++.+|.+..
T Consensus 18 ~~~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 92 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEG-----DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 92 (323)
T ss_dssp TCSSHHHHHHHHHHTT-----CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 5399999999999859-----99999999999998689989999999999998377588999998510022222222222
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999835897664123599999999986203999930121203799999999987706899999999963052249999
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1147 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1147 (1652)
++..|.+.+ .++.|+..|.+..... ++. ..++.. .
T Consensus 93 la~~~~~~~--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~-----------------------------~ 127 (323)
T d1fcha_ 93 LAVSFTNES--------LQRQACEILRDWLRYT-PAY-------AHLVTP-----------------------------A 127 (323)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHTS-TTT-------GGGCC-------------------------------
T ss_pred CCCCCCCCC--------CCCCCCCCHHHHHHHC-CCH-------HHHHHH-----------------------------H
T ss_conf 222222222--------1121110002677736-106-------788876-----------------------------6
Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64230899998641277320568888999850160679862011233221689986553123788999999999888630
Q 000330 1148 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1227 (1652)
Q Consensus 1148 E~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~ 1227 (1652)
. .......+ ..+.
T Consensus 128 ~---------------------------------------------------------------~~~~~~~~--~~~~-- 140 (323)
T d1fcha_ 128 E---------------------------------------------------------------EGAGGAGL--GPSK-- 140 (323)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H---------------------------------------------------------------HHHHHCCC--CCCH--
T ss_conf 4---------------------------------------------------------------00000001--0000--
Q ss_pred CCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HH--HHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 2884023433110136867789999997139799999999999939984148--98--9999851026875099999999
Q 000330 1228 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VL--MKARLQKHDFGDLSSVGFEEAL 1303 (1652)
Q Consensus 1228 ~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L--~AAyL~~K~m~~~Aisvle~AL 1303 (1652)
+. +..+........+...|.++++..|...+. +. ...++..++ .++|+..|+.++
T Consensus 141 ------------~~--------~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al 199 (323)
T d1fcha_ 141 ------------RI--------LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE-YDKAVDCFTAAL 199 (323)
T ss_dssp ------------CT--------THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred ------------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHCCCCCCC
T ss_conf ------------14--------788887657999999999999971301222111036888888887-755002111222
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82999983378999999999997399479999999999965010256111201110268999999999998522223322
Q 000330 1304 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1383 (1652)
Q Consensus 1304 ~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1383 (1652)
...|++.. +|..+.......++++.|+..+.+.+.- . |. ..+.+
T Consensus 200 ~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~----p~--------~~~a~----- 243 (323)
T d1fcha_ 200 SVRPNDYL----LWNKLGATLANGNQSEEAVAAYRRALEL---------------Q----PG--------YIRSR----- 243 (323)
T ss_dssp HHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------C----TT--------CHHHH-----
T ss_pred CCCCCCCC----CHHHHHHCCCCCCCCHHHHHHHHHHHHH---------------H----HC--------CHHHH-----
T ss_conf 22222211----1013330122111101378887789988---------------4----32--------49999-----
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 11357799999999852049899999999997110277
Q 000330 1384 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1384 q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
-.||.+++. .|++++|...|++||..+|.+
T Consensus 244 ------~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 244 ------YNLGISCIN--LGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp ------HHHHHHHHH--HTCHHHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC
T ss_conf ------999999998--789999999999999709757
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.8e-12 Score=94.89 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 21000108999999998730035544559999999999998299998999999999972889712899999998509988
Q 000330 986 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 986 le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
|+..|.+.+.|..+|..+...+ +++.|+..|.+|++++|+++.+|+.++.+|...+...++.+++++++...|..
T Consensus 46 l~~~P~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 120 (323)
T d1fcha_ 46 VQQDPKHMEAWQYLGTTQAENE-----QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 120 (323)
T ss_dssp HHSCTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCH
T ss_conf 9868998999999999999837-----75889999985100222222222222222222221121110002677736106
Q ss_pred HH
Q ss_conf 99
Q 000330 1066 YA 1067 (1652)
Q Consensus 1066 Y~ 1067 (1652)
..
T Consensus 121 ~~ 122 (323)
T d1fcha_ 121 AH 122 (323)
T ss_dssp GG
T ss_pred HH
T ss_conf 78
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=3.2e-10 Score=82.71 Aligned_cols=256 Identities=12% Similarity=0.049 Sum_probs=150.0
Q ss_pred CHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9899999999997288971--------28999999985099889999999835897664123599999999986203999
Q 000330 1031 SEILWITYLLIFYSNTNSV--------GKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1102 (1652)
Q Consensus 1031 SaelWy~Ll~lY~~~~~~e--------ea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~ 1102 (1652)
...+|..|+.+....+... .+...|++|+...|.+..||.+|+.-. ..-...+ .. . .
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~----------~~~~~~~---~~-~-~ 71 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYL----------EQSSKLL---AE-K-G 71 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------HHHHHHH---HH-T-S
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH----------HHCCCHH---HH-H-H
T ss_conf 999999999998768654332203699999999999987779999999999999----------8707368---87-7-7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 93012120379999999998770689999999996305224999964230899998641277320568888999850160
Q 000330 1103 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLP 1182 (1652)
Q Consensus 1103 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLP 1182 (1652)
+. ....+.+++|...+.|-.. ...|+ ....|+.+.....-+
T Consensus 72 ~~-----------------~~~~~~~~~a~~i~~ral~----~~~p~---------------~~~l~~~ya~~~~~~--- 112 (308)
T d2onda1 72 DM-----------------NNAKLFSDEAANIYERAIS----TLLKK---------------NMLLYFAYADYEESR--- 112 (308)
T ss_dssp CC-----------------HHHHHHHHHHHHHHHHHHT----TTTTT---------------CHHHHHHHHHHHHHT---
T ss_pred HH-----------------HHCCCCHHHHHHHHHHHHH----HCCCC---------------CHHHHHHHHHHHHHC---
T ss_conf 87-----------------6310245999999999998----74998---------------799999999999861---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 67986201123322168998655312378899999999988863028840234331101368677899999971397999
Q 000330 1183 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECS 1262 (1652)
Q Consensus 1183 Gdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A 1262 (1652)
+ +.+.+..++.-+. .. . ++.....-+.++......++.+.+
T Consensus 113 -------~------------------~~~~a~~i~~~~l---~~--~---------~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 113 -------M------------------KYEKVHSIYNRLL---AI--E---------DIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp -------T------------------CHHHHHHHHHHHH---TS--S---------SSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred -------C------------------CHHHHHHHHHHHH---HH--H---------CCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf -------3------------------3899999999999---87--1---------578699999999999982786889
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999993998414898999985102--68750999999998299998337899999999999739947999999999
Q 000330 1263 MNLLEKYIKLYPSCLELVLMKARLQKHD--FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 1340 (1652)
Q Consensus 1263 ~~LfdklLk~~P~dveL~L~AAyL~~K~--m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~f 1340 (1652)
+.+|.++++.+|.+..+++..+.+.... ..+.|+.+|+.++...|++.. .|+.|+.+.+..++.+.|..+.++.
T Consensus 154 r~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~----~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 154 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE----YVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999998088867999999999987655778999999999986100388----9999999999869868999999999
Q ss_pred HHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 996501025611120111026899999999999852222332211357799999--999852049899999999997110
Q 000330 1341 FHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQNDWNEARLAIDAALKAA 1418 (1652)
Q Consensus 1341 f~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD--~Lyq~Lqg~~~EAfaAYDKALkan 1418 (1652)
+..++ .++ +-. ..+|+ +.+.-.+|+...+...++++.+..
T Consensus 230 i~~~~-------------------~~~--------~~~-----------~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 230 LTSGS-------------------LPP--------EKS-----------GEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHSSS-------------------SCG--------GGC-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHCC-------------------CCH--------HHH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 98278-------------------986--------899-----------9999999999998499999999999999877
Q ss_pred CCC
Q ss_conf 277
Q 000330 1419 ASE 1421 (1652)
Q Consensus 1419 p~N 1421 (1652)
|..
T Consensus 272 ~~~ 274 (308)
T d2onda1 272 REE 274 (308)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 110
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.9e-11 Score=88.85 Aligned_cols=134 Identities=9% Similarity=0.095 Sum_probs=111.8
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCC
Q ss_conf 210001089999999987300355445599999999999982999989999999999728897-1289999999850998
Q 000330 986 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 986 le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~-eea~emlekAVelnP~ 1064 (1652)
|.-.|.-.+++--++..+..++. ++.|+.++.+||++||....+|+..+.++...+.+ +++...+++|++.+|.
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~-----~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~ 110 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDER-----SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 22697799999999999995886-----6999999999998798876999999999998376799999999999988774
Q ss_pred CHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 899----9999983589766412359999999998620399993012120379999999998770689999999996305
Q 000330 1065 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1065 NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1140 (1652)
+++ +++.|...+ .|++|+..|.++.... |.. .++|..+..++...|+++.|+..+++...
T Consensus 111 ~~~a~~~~~~~~~~l~--------~~~eAl~~~~kal~~d-p~n-------~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLR--------DPSQELEFIADILNQD-AKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp CHHHHHHHHHHHHHHT--------CCTTHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHH-HCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2268988758888505--------3788998875554321-004-------68899887788888866789999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=2.4e-11 Score=90.29 Aligned_cols=257 Identities=13% Similarity=0.042 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHH
Q ss_conf 999999999998299998999999999972889----------7128999999985099889999999835897664123
Q 000330 1015 KKALSLLSRALEADPTSEILWITYLLIFYSNTN----------SVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLD 1084 (1652)
Q Consensus 1015 dAALdLLsrALEINPtSaelWy~Ll~lY~~~~~----------~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~ 1084 (1652)
+.|+.++.++|++||...++|.....++..... -.++..+|++|++.+|.++.+|......-..++ + .
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~-~-~ 123 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP-E-P 123 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS-S-C
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-C-C
T ss_conf 9999999999998878589999999999997650034778778999999999999868886798988648998843-0-4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 599999999986203999930121203799999-9999877068999999999630522499996423089999864127
Q 000330 1085 AYDAALSVLCRCASASDGDEMHASACILDLFLQ-MLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTIS 1163 (1652)
Q Consensus 1085 ~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~-LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~s 1163 (1652)
++++|+..+.++...+ +.. .+.+.. +..++...+.+++|+..+.+... .+|.
T Consensus 124 ~~~~a~~~~~~al~~~-~~~-------~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-----~~p~-------------- 176 (334)
T d1dcea1 124 NWARELELCARFLEAD-ERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----RNFS-------------- 176 (334)
T ss_dssp CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----TTCC--------------
T ss_pred CHHHHHHHHHHHHHHC-CHH-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----CCCC--------------
T ss_conf 2899999999998559-212-------111105789998744552899999999887-----1898--------------
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHH-
Q ss_conf 7320568888999850160679862011233221689986553123788999999999888630288402343311013-
Q 000330 1164 DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA- 1242 (1652)
Q Consensus 1164 DKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~- 1242 (1652)
+- .+| . .+|.+|...+...+|... +...++..|...-.... +....-.+++...- .+..
T Consensus 177 ~~-~a~---------~-~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~----~~~l~~~~~a~~~~--~~~l~ 236 (334)
T d1dcea1 177 NY-SSW---------H-YRSCLLPQLHPQPDSGPQ---GRLPENVLLKELELVQN----AFFTDPNDQSAWFY--HRWLL 236 (334)
T ss_dssp CH-HHH---------H-HHHHHHHHHSCCCCSSSC---CSSCHHHHHHHHHHHHH----HHHHCSSCSHHHHH--HHHHH
T ss_pred CH-HHH---------H-HHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHCCHHHHHHHH--HHHHH
T ss_conf 79-999---------9-999999982688989998---87767768999999999----98824414889999--98877
Q ss_pred -----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -----686778999999713979999999999993998414898-99998510268750999999998299998337899
Q 000330 1243 -----HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCI 1316 (1652)
Q Consensus 1243 -----~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL~L-~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~ca 1316 (1652)
...-.+....+...++..++...|.++++..|.+...+. .+..+...+..++|+..|++|+.++|++.. .
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~----y 312 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA----Y 312 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH----H
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----H
T ss_conf 186605678879999999866999999999887629137999999999998789999999999999987966399----9
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000330 1317 WNQYVEYA 1324 (1652)
Q Consensus 1317 W~QLIq~a 1324 (1652)
|..|....
T Consensus 313 ~~~L~~~~ 320 (334)
T d1dcea1 313 LDDLRSKF 320 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=3.3e-10 Score=82.60 Aligned_cols=131 Identities=8% Similarity=-0.019 Sum_probs=72.4
Q ss_pred HHCCCCHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHH
Q ss_conf 100010899999999873003-----55445599999999999982999989999999999728897--12899999998
Q 000330 987 KQVELSNEQCVEMALLILNQD-----ANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS--VGKDDMFSYSV 1059 (1652)
Q Consensus 987 e~~~~d~elWLelAl~~Lnq~-----~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~--eea~emlekAV 1059 (1652)
+..|.+...|......+.... ....+.++.|+..+..+|+++|.+..+|+.++..+...+.. .++...+++|+
T Consensus 57 ~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 136 (334)
T d1dcea1 57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 136 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98878589999999999997650034778778999999999999868886798988648998843042899999999998
Q ss_pred HHCCCCHH-----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 50998899-----999998358976641235999999999862039999301212037999999999877068999999
Q 000330 1060 KHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1133 (1652)
Q Consensus 1060 elnP~NY~-----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1133 (1652)
+.+|.++. +|..|...+ .++.|+..+..+...+ |.. .+.|..+..+|...|++++|+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~Al~~~~~~i~~~-p~~-------~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 137 EADERNFHCWDYRRFVAAQAAV--------APAEELAFTDSLITRN-FSN-------YSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHHTCC--------CHHHHHHHHHTTTTTT-CCC-------HHHHHHHHHHHHHHSCCCCSSS
T ss_pred HHCCHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHCC-CCC-------HHHHHHHHHHHHHHCCHHHHHH
T ss_conf 5592121111057899987445--------5289999999988718-987-------9999999999998268898999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.9e-08 Score=70.92 Aligned_cols=101 Identities=13% Similarity=-0.035 Sum_probs=69.1
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC
Q ss_conf 51026875099999999829999833789999999999973994799999999999650102561112011102689999
Q 000330 1287 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSS 1366 (1652)
Q Consensus 1287 ~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~ 1366 (1652)
...+....+...++.++...|.+.......|..+....+..++++.++...++.... .+....+.
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~~~~~~~~- 288 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN--------------ARSLRLMS- 288 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------HHHTTCHH-
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------HHHCCCCH-
T ss_conf 860448989999999997622466677788999999998758799999999999988--------------76426674-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999852222332211357799999999852049899999999997110277
Q 000330 1367 PESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1421 (1652)
Q Consensus 1367 ~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N 1421 (1652)
...+.+ ..+|.+|+. .|+.++|...|++||...+..
T Consensus 289 ------~~~~~~-----------~~la~~~~~--~g~~~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 289 ------DLNRNL-----------LLLNQLYWQ--AGRKSDAQRVLLDALKLANRT 324 (366)
T ss_dssp ------HHHHHH-----------HHHHHHHHH--HTCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHHHHC
T ss_conf ------799999-----------999999998--789999999999999976531
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=7.2e-09 Score=73.69 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCH
Q ss_conf 5599999999999982----9999899999999997288971289999999850998899----9999983589766412
Q 000330 1012 EGMKKALSLLSRALEA----DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRL 1083 (1652)
Q Consensus 1012 g~ydAALdLLsrALEI----NPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl 1083 (1652)
..++.|+..+..+|.. +|..+.+||.++.+|...+..+++.+.|++|++++|++.. ++..|...+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g------- 85 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG------- 85 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHH-------
T ss_conf 7999999999999876336999999999999999998799999999999854349998899960042788877-------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 35999999999862039999301212037999999999877068999999999630
Q 000330 1084 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1084 ~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1139 (1652)
.|++|+..|.++.... |+. .++++.+..+|...|++++|+..+.+..
T Consensus 86 -~~~~A~~~~~~al~~~-p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 86 -NFDAAYEAFDSVLELD-PTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFY 132 (259)
T ss_dssp -CHHHHHHHHHHHHHHC-TTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -7887523446899987-611-------1158889999998766799999999998
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.5e-07 Score=64.86 Aligned_cols=290 Identities=9% Similarity=-0.052 Sum_probs=167.0
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 22100010899999999873003554455999999999999829999-----8999999999972889712899999998
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSV 1059 (1652)
Q Consensus 985 ~le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-----aelWy~Ll~lY~~~~~~eea~emlekAV 1059 (1652)
.|.+.+...+...-.|...+.++ +++.|+.++..+|+.+|.+ ..++..++.+|...|...++..+|++|+
T Consensus 4 ~~~~~~~~ae~~~lrA~~~~~~g-----~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 4 DIREDTMHAEFNALRAQVAINDG-----NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 30566213999999999999888-----9999999999998548689967999999999999998799999999999999
Q ss_pred HHCCCC---HH-------HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 509988---99-------99999835897664123599999999986203999930121203799999999987706899
Q 000330 1060 KHNEGS---YA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 1129 (1652)
Q Consensus 1060 elnP~N---Y~-------LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnyd 1129 (1652)
+..+.. .. ++..|...+ .+..|+..+....................+...+..+|...|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 150 (366)
T d1hz4a_ 79 QMARQHDVWHYALWSLIQQSEILFAQG--------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 150 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 998750114899999988878878888--------899999889999998675034125678889988878999814566
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 99999996305224999964230899998641277320568888999850160679862011233221689986553123
Q 000330 1130 KAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE 1209 (1652)
Q Consensus 1130 KAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdE 1209 (1652)
.++..+.......... ++...+.. ... .+.++...+ +
T Consensus 151 ~a~~~~~~~~~~~~~~-----------------~~~~~~~~-~~~-------~~~~~~~~~------------------~ 187 (366)
T d1hz4a_ 151 EAEASARSGIEVLSSY-----------------QPQQQLQC-LAM-------LIQCSLARG------------------D 187 (366)
T ss_dssp HHHHHHHHHHHHTTTS-----------------CGGGGHHH-HHH-------HHHHHHHHT------------------C
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHH-HHH-------HHHHHHHHH------------------H
T ss_conf 6689999988876630-----------------02468999-988-------888887646------------------6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH------HH
Q ss_conf 78899999999988863028840234331101368677--89999997139799999999999939984148------98
Q 000330 1210 KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL------VL 1281 (1652)
Q Consensus 1210 PdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKL--N~Ir~lI~LEDse~A~~LfdklLk~~P~dveL------~L 1281 (1652)
...+...+..+...+.. .+. .......+ .....+...++.+.+...+.+.++..|.+... .+
T Consensus 188 ~~~a~~~~~~a~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 188 LDNARSQLNRLENLLGN-GKY---------HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHHHHHHHHTT-SCC---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HCC---------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 78888999999999987-311---------57269999999999998604489899999999976224666777889999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99998510268750999999998299--9983378999999999997399479999999999
Q 000330 1282 MKARLQKHDFGDLSSVGFEEALIKWP--KGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1341 (1652)
Q Consensus 1282 ~AAyL~~K~m~~~Aisvle~AL~~~P--kNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff 1341 (1652)
..+|+..++ ...+...|+.++.... ...+....+|..+....++.+++++|+..+++.+
T Consensus 258 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 258 ARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999987587-9999999999998876426674799999999999998789999999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=9.6e-09 Score=72.85 Aligned_cols=123 Identities=11% Similarity=-0.086 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH--
Q ss_conf 010899999999873003554455999999999999829999899999999997288971289999999850998899--
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1067 (1652)
Q Consensus 990 ~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~-- 1067 (1652)
+...+.|..++..+... |+++.|+..|.++|+++|+.+.+|+.++.+|..+++..++.++|++|++++|.+..
T Consensus 34 ~~~a~~~~~~G~~y~~~-----g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 108 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSL-----GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 108 (259)
T ss_dssp HHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987-----9999999999985434999889996004278887778875234468999876111158
Q ss_pred --HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf --999998358976641235999999999862039999301212037999999999877068999999
Q 000330 1068 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1133 (1652)
Q Consensus 1068 --LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1133 (1652)
++..|...+ .++.|+..+.......+.+ ......+.-.+...+..+.+..
T Consensus 109 ~~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T d1xnfa_ 109 LNRGIALYYGG--------RDKLAQDDLLAFYQDDPND--------PFRSLWLYLAEQKLDEKQAKEV 160 (259)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999876--------6799999999998653000--------7888999999988535878999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1e-07 Score=65.92 Aligned_cols=218 Identities=9% Similarity=0.027 Sum_probs=144.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9829999899999999997288971289999999850998899999----998358976641235999999999862039
Q 000330 1025 LEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAYDAALSVLCRCASAS 1100 (1652)
Q Consensus 1025 LEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~Lwl----mYInsr~slddrl~~YdkAI~vLe~las~~ 1100 (1652)
+..+|.-++++..++.++.+.+..+++.+.+++|++++|.++..|. .+...+ . .|++|+..+......+
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~----~---~~~eal~~~~~al~~~ 108 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ----K---DLHEEMNYITAIIEEQ 108 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----C---CHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHH
T ss_conf 22697799999999999995886699999999999879887699999999999837----6---7999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99930121203799999999987706899999999963052249999642308999986412773205688889998501
Q 000330 1101 DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRK 1180 (1652)
Q Consensus 1101 ~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrv 1180 (1652)
|+. .++|..+..++...|++++||..+.+... ++..+. .+|.-
T Consensus 109 -p~~-------~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~------------------~a~~~--------- 151 (315)
T d2h6fa1 109 -PKN-------YQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNY------------------HAWQH--------- 151 (315)
T ss_dssp -TTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCH------------------HHHHH---------
T ss_pred -HHH-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCH------------------HHHHH---------
T ss_conf -742-------26898875888850537889988755543--210046------------------88998---------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 60679862011233221689986553123788999999999888630288402343311013686778999999713979
Q 000330 1181 LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLE 1260 (1652)
Q Consensus 1181 LPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse 1260 (1652)
.|.++...+...+|+.. +.++++.+|.+..+....+.-+-. .+ .+......+
T Consensus 152 -~~~~~~~~~~~~~Al~~---~~~al~~~p~n~~a~~~r~~~l~~--~~----------------------~~~~~~~~~ 203 (315)
T d2h6fa1 152 -RQWVIQEFKLWDNELQY---VDQLLKEDVRNNSVWNQRYFVISN--TT----------------------GYNDRAVLE 203 (315)
T ss_dssp -HHHHHHHHTCCTTHHHH---HHHHHHHCTTCHHHHHHHHHHHHH--TT----------------------CSCSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHH--CC----------------------CCCHHHHHH
T ss_conf -87788888866789999---999998797449999889999987--45----------------------631023547
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 999999999993998414898999985102687509999999982999983378
Q 000330 1261 CSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQ 1314 (1652)
Q Consensus 1261 ~A~~LfdklLk~~P~dveL~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~ 1314 (1652)
+++..+.++++..|.+..+|.+...+..+.+..++...++.++.+.|+....+.
T Consensus 204 ~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (315)
T d2h6fa1 204 REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYL 257 (315)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 767999999984988569999987798862718899999999972877578999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3e-08 Score=69.53 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=97.9
Q ss_pred HHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHH
Q ss_conf 999998730035--54455999999999999829999899999999997288971289999999850998899----999
Q 000330 997 VEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1070 (1652)
Q Consensus 997 LelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----Lwl 1070 (1652)
|+-|..+..+.. ...++|+.|+..|..+|+++|+++.+|+.++.+|..++...++.++|++|++++|.+.. ++.
T Consensus 7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~ 86 (159)
T d1a17a_ 7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999995899999998660211000113332456788874054212888899999875446687799999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH--HHHCCHHHHHH
Q ss_conf 9983589766412359999999998620399993012120379999999998--77068999999
Q 000330 1071 MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF--CMSGNTEKAIQ 1133 (1652)
Q Consensus 1071 mYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY--~qSGnydKAI~ 1133 (1652)
.|...+ .|++|+..|.+..... |+. .+++..+.++. ...+.+++|+.
T Consensus 87 ~~~~~g--------~~~eA~~~~~~a~~~~-p~~-------~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 87 SNMALG--------KFRAALRDYETVVKVK-PHD-------KDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHS-TTC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC--------CHHHHHHHHHHHHHCC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999949--------9999999899998729-997-------999999999999999898999975
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.3e-06 Score=58.71 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHH
Q ss_conf 455999999999999829999899999999997288971289999999850998899----9999983589766412359
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1086 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1086 (1652)
.++++.|+..|.. +.|.++.+|+.++.+|..+++-.++.++|++|++++|.+.. ++..|...+ .|
T Consensus 18 ~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g--------~~ 86 (192)
T d1hh8a_ 18 KKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--------KY 86 (192)
T ss_dssp TTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CH
T ss_pred CCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CH
T ss_conf 7799999999986---489889999999999998589146787899999985523466788999998542--------49
Q ss_pred HHHHHHHHHHHHCCCCCCC----H----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999999986203999930----1----2120379999999998770689999999996305
Q 000330 1087 DAALSVLCRCASASDGDEM----H----ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1087 dkAI~vLe~las~~~~Dr~----~----~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1140 (1652)
+.|+..|++.....++... . .....-++++.+..+|...|++++|++.+.+-..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999867267367899866543630588999999999997899999999999983
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.6e-07 Score=63.30 Aligned_cols=97 Identities=10% Similarity=0.013 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHH
Q ss_conf 4455999999999999829999899999999997288971289999999850998899----999998358976641235
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1085 (1652)
..|+|+.|+..|..||+++|+++.+|+.++..|..++...++...|++|++.+|.+.. ++.+|...+ .
T Consensus 15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--------~ 86 (117)
T d1elwa_ 15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN--------R 86 (117)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------C
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------C
T ss_conf 96999999999999886199601343000110110000112100134677740220267788999999812--------7
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998620399993012120379999999998
Q 000330 1086 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1122 (1652)
Q Consensus 1086 YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1122 (1652)
|++|+..|.+..... |+. .+++..+-.+.
T Consensus 87 ~~~A~~~~~~a~~~~-p~~-------~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE-ANN-------PQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTC-TTC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHH
T ss_conf 999999999999849-898-------99999999783
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=7.8e-08 Score=66.77 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHH
Q ss_conf 4455999999999999829999899999999997288971289999999850998899----999998358976641235
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1085 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1085 (1652)
..|+|+.|+..|..+|+++|.++.+|+.++..|...+....+..+|++|++++|.+.. ++..|...+ .
T Consensus 16 ~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~--------~ 87 (201)
T d2c2la1 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME--------S 87 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT--------C
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------C
T ss_conf 86999999999999998599989999817898741000001247888888718873899999999999879--------9
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999862039
Q 000330 1086 YDAALSVLCRCASAS 1100 (1652)
Q Consensus 1086 YdkAI~vLe~las~~ 1100 (1652)
|++|+..|.++....
T Consensus 88 ~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 88 YDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999998749
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=1.4e-06 Score=58.29 Aligned_cols=91 Identities=19% Similarity=0.125 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----H
Q ss_conf 899999999873003554455999999999999829999899999999997288971289999999850998899----9
Q 000330 993 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1068 (1652)
Q Consensus 993 ~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----L 1068 (1652)
.+.++..+..+...+ +++.|...|..+++++|+++.+|+.++.+|...+...++..+|++|++++|.+.. |
T Consensus 16 ~~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 90 (112)
T d1hxia_ 16 HENPMEEGLSMLKLA-----NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 90 (112)
T ss_dssp CSCHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 899999999999876-----058999988610112111100123354564101258774100000111111000003789
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999835897664123599999999986
Q 000330 1069 WLMYINSRTPLNHRLDAYDAALSVLCRC 1096 (1652)
Q Consensus 1069 wlmYInsr~slddrl~~YdkAI~vLe~l 1096 (1652)
+..|.+.+ .+++|++.|.+.
T Consensus 91 a~~y~~~g--------~~~~A~~~l~~~ 110 (112)
T d1hxia_ 91 AVSHTNEH--------NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHCC--------CHHHHHHHHHHH
T ss_conf 99999978--------999999999998
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=7.9e-06 Score=53.38 Aligned_cols=78 Identities=6% Similarity=-0.050 Sum_probs=38.4
Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 139799999999999939984148--989999851026875099999999829999833789999999999973994799
Q 000330 1256 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1333 (1652)
Q Consensus 1256 LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~a 1333 (1652)
.++++.|+..|.++ .|..+.+ .|-..|+.+++ -++|+..|++|+.++|+++. +|+++.....+.++++.|
T Consensus 18 ~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~-~~~A~~~~~kAl~ldp~~~~----a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 18 KKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAV----AYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp TTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCHHHH
T ss_conf 77999999999864---89889999999999998589-14678789999998552346----678899999854249999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000330 1334 AELMDRWF 1341 (1652)
Q Consensus 1334 i~L~~~ff 1341 (1652)
+.-+.+.+
T Consensus 90 ~~~~~kAl 97 (192)
T d1hh8a_ 90 IKDLKEAL 97 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=8.3e-06 Score=53.23 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH--H--------HHHHHHH-CCC
Q ss_conf 9999999999982------999989999999999728897128999999985099889--9--------9999983-589
Q 000330 1015 KKALSLLSRALEA------DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY--A--------LWLMYIN-SRT 1077 (1652)
Q Consensus 1015 dAALdLLsrALEI------NPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY--~--------LwlmYIn-sr~ 1077 (1652)
+.|...|.+|+++ .+..+.+|..++.+|.+++...++.+++++|+++.+.+- . ++.+|.. .+
T Consensus 54 ~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 132 (290)
T d1qqea_ 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH- 132 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999987599889999999999999980885888999997667765325320589999998886764787-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 76641235999999999862039999301212037999999999877068999999999630
Q 000330 1078 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1078 slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1139 (1652)
.|++|+..|.+.......+ ........++..+..+|...|+|++|+..+.++.
T Consensus 133 -------~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 133 -------DYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (290)
T ss_dssp -------CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf -------8999988999999998733--7603334688999999998173999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=1.2e-05 Score=52.26 Aligned_cols=118 Identities=11% Similarity=0.047 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 0108999999998730035--5445599999999999982----------------999989999999999728897128
Q 000330 990 ELSNEQCVEMALLILNQDA--NKLEGMKKALSLLSRALEA----------------DPTSEILWITYLLIFYSNTNSVGK 1051 (1652)
Q Consensus 990 ~~d~elWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEI----------------NPtSaelWy~Ll~lY~~~~~~eea 1051 (1652)
..+.+.|++.|..+-.... ...++|..|+..|..||+. +|..+.+|..++..|.+++.-..+
T Consensus 17 l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 96 (169)
T d1ihga1 17 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA 96 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 74099999999999999999999088999999999998741111666655778771902399999899999864021013
Q ss_pred HHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999850998899----99999835897664123599999999986203999930121203799999999987
Q 000330 1052 DDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC 1123 (1652)
Q Consensus 1052 ~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~ 1123 (1652)
...|.+|++++|.+.. ++..|.+.+ .|+.|+..|....... |+. .++...+..++.
T Consensus 97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~--------~~~~A~~~~~~al~l~-p~n-------~~~~~~l~~~~~ 156 (169)
T d1ihga1 97 VDSCLEALEIDPSNTKALYRRAQGWQGLK--------EYDQALADLKKAQEIA-PED-------KAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHH
T ss_conf 66655443100022367776999999804--------7999999999999859-899-------999999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=8.5e-06 Score=53.14 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999997288971289999999850998899----99999835897664123599999999986203999930121
Q 000330 1033 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHAS 1108 (1652)
Q Consensus 1033 elWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~S 1108 (1652)
..|+..+..+.+.+.-.++..+|++|++.+|++.+ |+..|...+ .+++|+..|.+..... |+.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~al~~~-p~~---- 83 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--------KDGLAIIALNHARMLD-PKD---- 83 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--------HHHHHHCCCCCCCCCC-CCC----
T ss_conf 999999999998760589999886101121111001233545641012--------5877410000011111-100----
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 2037999999999877068999999999630
Q 000330 1109 ACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1109 a~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1139 (1652)
.++++.+..+|...|++++|+..+.|.+
T Consensus 84 ---~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 84 ---IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ---0003789999999789999999999981
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=5.5e-05 Score=47.74 Aligned_cols=113 Identities=11% Similarity=0.030 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999998730035--54455999999999999829999899999999997288971289999999850998899999998
Q 000330 996 CVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1073 (1652)
Q Consensus 996 WLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1073 (1652)
=|+.|..+-..+. ...++|+.|...|..||++.|.....+....... ..+..++ -..++..|.
T Consensus 9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~----------~~~~~~~-----~~nla~~y~ 73 (170)
T d1p5qa1 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA----------QALRLAS-----HLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH----------HHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH----------CHHHHHH-----HHHHHHHHH
T ss_conf 9999999999999999969999999999999887510100035777640----------6467999-----999999988
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 358976641235999999999862039999301212037999999999877068999999999630
Q 000330 1074 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1074 nsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1139 (1652)
+.+ .|++|+..+.+....+ |+. ...++.+..+|...|+|+.|+..+.+..
T Consensus 74 k~~--------~~~~A~~~~~~al~~~-p~~-------~~a~~~~g~~~~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 74 KLQ--------AFSAAIESCNKALELD-SNN-------EKGLSRRGEAHLAVNDFELARADFQKVL 123 (170)
T ss_dssp HTT--------CHHHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH--------HCCCCCCHHHHHHHCC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 642--------1101100000001002-231-------0346777999987222999999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=3.6e-05 Score=48.97 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99899999999997288971289999999850998899----99999835897664123599999999986203999930
Q 000330 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM 1105 (1652)
Q Consensus 1030 tSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~ 1105 (1652)
.+++.+...+..|+..+.-.++...|++|++.+|.+.. ++..|...+ .|++|+..|..+.... |+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~--------~~~~Ai~~~~~al~l~-p~~- 71 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELD-GQS- 71 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTSC-TTC-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC-CCC-
T ss_conf 649999999999998699999999999999859998999981789874100--------0001247888888718-873-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 12120379999999998770689999999996305
Q 000330 1106 HASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1106 ~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1140 (1652)
.+.|+.+..+|...|++++|+..+.+...
T Consensus 72 ------~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 72 ------VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ------89999999999987999999999999987
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.4e-06 Score=53.99 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH-----------HHHHHHHCCC
Q ss_conf 54455999999999999829999899999999997288971289999999850998899-----------9999983589
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----------LWLMYINSRT 1077 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~-----------LwlmYInsr~ 1077 (1652)
...++|+.|+..|.++|+++|+++.+|+.++..|..++.-..+.+.|++|++++|.+.. ++..|...+
T Consensus 15 ~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~- 93 (128)
T d1elra_ 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE- 93 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 9859999999999999884964589998688999881860778999999998680127889889999999999999938-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 76641235999999999862039999
Q 000330 1078 PLNHRLDAYDAALSVLCRCASASDGD 1103 (1652)
Q Consensus 1078 slddrl~~YdkAI~vLe~las~~~~D 1103 (1652)
.|++|+..|....... ++
T Consensus 94 -------~~~~A~~~~~kal~~~-~~ 111 (128)
T d1elra_ 94 -------KYKDAIHFYNKSLAEH-RT 111 (128)
T ss_dssp -------CHHHHHHHHHHHHHHC-CC
T ss_pred -------CHHHHHHHHHHHHHCC-CC
T ss_conf -------8999999999998459-99
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.08 E-value=2.7e-05 Score=49.83 Aligned_cols=94 Identities=6% Similarity=-0.002 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHCCCCHH----HHHHHHHC
Q ss_conf 44559999999999998299998999999999972889----------71289999999850998899----99999835
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------SVGKDDMFSYSVKHNEGSYA----LWLMYINS 1075 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~----------~eea~emlekAVelnP~NY~----LwlmYIns 1075 (1652)
..+.++.|+..|..+++++|+++.+|+.++..+...+. -+++...|++|++++|.+.. ++..|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 87369999999999986188310899999999987621333367788788899999998873012058776689999870
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89---766412359999999998620399993
Q 000330 1076 RT---PLNHRLDAYDAALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1076 r~---slddrl~~YdkAI~vLe~las~~~~Dr 1104 (1652)
+. ........|.+|+..|..+.... |+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~-P~~ 119 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQ-PDN 119 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCH
T ss_conf 1011357889886787631211000259-888
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=2.5e-05 Score=50.03 Aligned_cols=77 Identities=8% Similarity=-0.047 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 00108999999998730035544559999999999998299998999999999972889712899999998509988999
Q 000330 989 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1068 (1652)
Q Consensus 989 ~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~L 1068 (1652)
.|.+...|..+|.-++..+ +++.|+..+.++++++|+++.+|+.++.+|..++...++...|++|++++|.+..+
T Consensus 33 ~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 107 (117)
T d1elwa_ 33 DPHNHVLYSNRSAAYAKKG-----DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 107 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCHHHHHCCCCCCCCCC-----CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9960134300011011000-----01121001346777402202677889999998127999999999999849898999
Q ss_pred HH
Q ss_conf 99
Q 000330 1069 WL 1070 (1652)
Q Consensus 1069 wl 1070 (1652)
+.
T Consensus 108 ~~ 109 (117)
T d1elwa_ 108 KE 109 (117)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.03 E-value=7.4e-06 Score=53.56 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 44559999999999998299998999999999972889712899999998509988999999983589766412359999
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1089 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1089 (1652)
.-|+++.|+..|..+++.+|+++.++..|+.+|...|.-+++...|++|++++|+....+..|...-.... ....+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~----~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ----ARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----HHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCHHH
T ss_conf 88899999999999999789999999999999998799999999999999869973899999999998346----63789
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 99999862039999301212037999999999877068999999999630522499996423089999864127732056
Q 000330 1090 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW 1169 (1652)
Q Consensus 1090 I~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AW 1169 (1652)
...+.......+++. ...++.+..++...|+++.|+..+.++++ +....+. ..-..--..+.-+|..+.-
T Consensus 84 ~~~~~~~~~~~~p~~-------~~~~l~~a~~~~~~gd~~~A~~~~~~a~e--~~p~~~~-~~~~~~f~wi~D~D~Rlg~ 153 (264)
T d1zbpa1 84 AQGAATAKVLGENEE-------LTKSLVSFNLSMVSQDYEQVSELALQIEE--LRQEKGF-LANDTSFSDVRDIDDRLGG 153 (264)
T ss_dssp TTSCCCEECCCSCHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCCE-EETTEEESCEEESSTTTTT
T ss_pred HHHHHHHHCCCCCHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCCC-CCCCCCHHHHHCCCHHHHH
T ss_conf 987544420358647-------99999999999967998999999999983--3999981-0015577887443302066
Q ss_pred HHHHHH--HHHHCCCHHHH--HHHHHHHHHHCCCCCCCCCCH
Q ss_conf 888899--98501606798--620112332216899865531
Q 000330 1170 VCCVYL--VIYRKLPDAVL--QLLECEKELFAIDWPPVQLED 1207 (1652)
Q Consensus 1170 L~~iYl--lrYrvLPGdiy--~q~e~~KEAl~I~W~y~~vlk 1207 (1652)
+|.+.. -.|.=+|=+=+ .....++.+.++.|....+.-
T Consensus 154 ~~E~~~~~G~Y~w~p~~~i~~~~~~~p~~l~d~~w~~~~~~~ 195 (264)
T d1zbpa1 154 YIELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEFDI 195 (264)
T ss_dssp EEEEECTTSCEEEEEGGGEEEEEECCCCSSGGGTEEEEEEEE
T ss_pred HHHHHHCCCCEEEECHHHHHHHHCCCCCCHHHHHHHHEEEEE
T ss_conf 887652478279861898533425899988987411137883
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=5.7e-05 Score=47.64 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHCCCCH------HHHHHHHHCCCCCC
Q ss_conf 4455999999999999829999899999999997288971---28999999985099889------99999983589766
Q 000330 1010 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSV---GKDDMFSYSVKHNEGSY------ALWLMYINSRTPLN 1080 (1652)
Q Consensus 1010 ~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~e---ea~emlekAVelnP~NY------~LwlmYInsr~sld 1080 (1652)
+.+.++.|-..|.++|+++|.++++++.|+..++..+... ++..+|+++++.+|.+. .|+..|.+.+
T Consensus 11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g---- 86 (122)
T d1nzna_ 11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK---- 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----
T ss_conf 9999999999999988329998999999999999851267899999999999860699319999999999999973----
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 412359999999998620399993
Q 000330 1081 HRLDAYDAALSVLCRCASASDGDE 1104 (1652)
Q Consensus 1081 drl~~YdkAI~vLe~las~~~~Dr 1104 (1652)
.|++|+..|.++.... |+.
T Consensus 87 ----~~~~A~~~~~~aL~~~-P~~ 105 (122)
T d1nzna_ 87 ----EYEKALKYVRGLLQTE-PQN 105 (122)
T ss_dssp ----CHHHHHHHHHHHHHHC-TTC
T ss_pred ----HHHHHHHHHHHHHHHC-CCC
T ss_conf ----1699999999999769-098
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=0.00024 Score=43.45 Aligned_cols=115 Identities=5% Similarity=0.007 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HH
Q ss_conf 544559999999999998299998---------------99999999997288971289999999850998899----99
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSE---------------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1069 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSa---------------elWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1069 (1652)
...|+|..|+..|..||.+.|... .+|.-++..|+.++...++..+|++|++++|.+.. ++
T Consensus 26 ~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~ 105 (168)
T d1kt1a1 26 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 105 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99599999999999999999875001245553106467999984999987762201100022322201310488999889
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHC
Q ss_conf 999835897664123599999999986203999930121203799999999987706899-9999999630
Q 000330 1070 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE-KAIQRISRLL 1139 (1652)
Q Consensus 1070 lmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnyd-KAI~tl~rLE 1139 (1652)
..|...+ .|++|+..|.++.... |+. .+++..+..+....+.+. +.-..+.+|+
T Consensus 106 ~~~~~l~--------~~~~A~~~~~~al~l~-P~n-------~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 106 EAQLLMN--------EFESAKGDFEKVLEVN-PQN-------KAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHTT--------CHHHHHHHHHHHHHSC-TTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998827--------8999999999999859-898-------99999999999999869999999999998
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.5e-05 Score=51.51 Aligned_cols=217 Identities=10% Similarity=-0.016 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH-------HHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999999999829999899999999997288971289999999850998899-------99999835897664123599
Q 000330 1015 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1015 dAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~~Yd 1087 (1652)
..|...|..|++++|+.+.+|+.++..|..+++ ..+.|++|+..+|.... ||. . .|.
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~---l~eaye~~i~~dp~~a~~~~~e~~Lw~-----~--------~y~ 66 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQA---LQDLYQKMLVTDLEYALDKKVEQDLWN-----H--------AFK 66 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHH---HHHHHHHHHHHCHHHHHHHTHHHHHHH-----H--------HTH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCH---HHHHHHHHHHCCHHHHHHHHHHHHHHH-----H--------HHH
T ss_conf 899999999987199979999519999999762---999999998749301999857999999-----9--------999
Q ss_pred HHHHHHHHHHHCC-CCCCCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999999862039-999301212037999-99999987706899999999963052249999642308999986412773
Q 000330 1088 AALSVLCRCASAS-DGDEMHASACILDLF-LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1165 (1652)
Q Consensus 1088 kAI~vLe~las~~-~~Dr~~~Sa~iLDIL-L~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDK 1165 (1652)
.+++.+-...+.. .++. ..+. ..+..++..++.|++||..+..... + .+ .+.
T Consensus 67 ~~ie~~r~~~k~~~~~~~-------~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l---~~--------------~~~ 120 (497)
T d1ya0a1 67 NQITTLQGQAKNRANPNR-------SEVQANLSLFLEAASGFYTQLLQELCTVFN--V---DL--------------PCR 120 (497)
T ss_dssp HHHHHHHHHHSCSSCTTT-------THHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred HHHHHHHHHCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C---CH--------------HHH
T ss_conf 999999985616458437-------999999999999999999999999999878--9---91--------------139
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHH
Q ss_conf 20568888999850160679862011233221689986553123788999999999888630288402343311013686
Q 000330 1166 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF 1245 (1652)
Q Consensus 1166 c~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~t 1245 (1652)
.+ + ...|..+...+...+|..- +...+..+|..++ +.+|
T Consensus 121 -~~---------~-~~lg~~~~~~~~~~~A~~~---~~~al~~~~~~~~--~~LG------------------------- 159 (497)
T d1ya0a1 121 -VK---------S-SQLGIISNKQTHTSAIVKP---QSSSCSYICQHCL--VHLG------------------------- 159 (497)
T ss_dssp ------------------------------------CCHHHHHHHHHHH--HHHH-------------------------
T ss_pred -HH---------H-HHHHHHHHHCCCHHHHHHH---HHHHHCCCHHHHH--HHHH-------------------------
T ss_conf -99---------9-9857998758999999999---9988278899999--9999-------------------------
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 7789999997139799999999999939984148--98999985102687509999999982999983378999999999
Q 000330 1246 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1323 (1652)
Q Consensus 1246 KLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~ 1323 (1652)
..+...++.+.|+..|.++++..|.+... .|...|....+ ..+|+.-|.++|...|.... +|.-|...
T Consensus 160 -----~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~~~~~~----a~~nL~~~ 229 (497)
T d1ya0a1 160 -----DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPA----ASTNLQKA 229 (497)
T ss_dssp -----HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHH----HHHHHHHH
T ss_pred -----HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHH----HHHHHHHH
T ss_conf -----999980247899999999998789965999999999998699-99999999999817999789----99999999
Q ss_pred H
Q ss_conf 9
Q 000330 1324 A 1324 (1652)
Q Consensus 1324 a 1324 (1652)
.
T Consensus 230 ~ 230 (497)
T d1ya0a1 230 L 230 (497)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7.1e-05 Score=46.98 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999997288971289999999850998899----9999983589766412359999999998620399993012120379
Q 000330 1038 YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILD 1113 (1652)
Q Consensus 1038 Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLD 1113 (1652)
.+..|++.+.-.++...|++|++++|.+.. ++..|+..+ .+++|+..|..+...+ |+. .+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~kal~~~-p~~-------~~ 79 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELD-KKY-------IK 79 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTC-------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHC-CCC-------HH
T ss_conf 9999999589999999866021100011333245678887405--------4212888899999875-446-------68
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999999998770689999999996305
Q 000330 1114 LFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1114 ILL~LvqLY~qSGnydKAI~tl~rLEq 1140 (1652)
+|..+..+|...|+++.|+..+.+...
T Consensus 80 a~~~~g~~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 80 GYYRRAASNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 779999999994999999998999987
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00024 Score=43.51 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 5599999999999982999
Q 000330 1012 EGMKKALSLLSRALEADPT 1030 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPt 1030 (1652)
++|..|+..|..||++.|.
T Consensus 31 ~~y~~A~~~Y~~al~~~~~ 49 (153)
T d2fbna1 31 NEINEAIVKYKEALDFFIH 49 (153)
T ss_dssp TCHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 9999999999987760730
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=4.9e-05 Score=48.06 Aligned_cols=114 Identities=13% Similarity=-0.057 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH--HHHHHHHCCCCCCCCHHHHHH
Q ss_conf 455999999999999829999899999999997288971289999999850998899--999998358976641235999
Q 000330 1011 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDA 1088 (1652)
Q Consensus 1011 ~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~Ydk 1088 (1652)
.+.|+.|+..|..++.++|..+.+|+.++..|...+....+...+.+|++.+|..-. |+.+|...+ .|++
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~--------~~~~ 170 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRN--------QTSQ 170 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTT--------CHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CHHH
T ss_conf 99999999999998789911399999857998758999999999998827889999999999999802--------4789
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999998620399993012120379999999998770689999999996305
Q 000330 1089 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1140 (1652)
Q Consensus 1089 AI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1140 (1652)
|+..|.++.... |+. -+++.+|..+|...|++..|+.-+.|-..
T Consensus 171 A~~~y~~A~~l~-P~~-------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 171 AESYYRHAAQLV-PSN-------GQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHC-TTB-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999878-996-------59999999999986999999999999981
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.75 E-value=0.00024 Score=43.47 Aligned_cols=121 Identities=11% Similarity=-0.012 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 108999999998730035--------544559999999999998299998999999999972889712899999998509
Q 000330 991 LSNEQCVEMALLILNQDA--------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1062 (1652)
Q Consensus 991 ~d~elWLelAl~~Lnq~~--------n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVeln 1062 (1652)
.|.+-.|+-|.+.+.... ..+.+|+.|.++|.++ +.+|...+.-.++.++|++|+++.
T Consensus 2 ~~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHH--------------HHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 989999999998647324699885377643699999999999--------------999998869999999999999999
Q ss_pred CC--C-------HH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCHHHH
Q ss_conf 98--8-------99-999998358976641235999999999862039999301212037999999999877-0689999
Q 000330 1063 EG--S-------YA-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM-SGNTEKA 1131 (1652)
Q Consensus 1063 P~--N-------Y~-LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~q-SGnydKA 1131 (1652)
+. + |. ++.+|...+ .+++|+..|.+..... +.. ........++..+..+|-. .|++++|
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~--------~~~~A~~~~~~a~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A 137 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGG--------NSVNAVDSLENAIQIF-THR-GQFRRGANFKFELGEILENDLHDYAKA 137 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 875998899999999999999808--------8588899999766776-532-532058999999888676478789999
Q ss_pred HHHH
Q ss_conf 9999
Q 000330 1132 IQRI 1135 (1652)
Q Consensus 1132 I~tl 1135 (1652)
|..+
T Consensus 138 ~~~~ 141 (290)
T d1qqea_ 138 IDCY 141 (290)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8899
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.71 E-value=0.0002 Score=44.03 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 00108999999998730035544559999999999998299998999999999972889712899999998509988999
Q 000330 989 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1068 (1652)
Q Consensus 989 ~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~L 1068 (1652)
.|.....|..+|..+... ++|+.|+..+.+||+++|+.+.+|+.++..|..++.-.++.+.|++|++++|+|-.+
T Consensus 73 ~~~~~~~~~nla~~~~~~-----~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~ 147 (169)
T d1ihga1 73 QPVALSCVLNIGACKLKM-----SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 147 (169)
T ss_dssp HHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 902399999899999864-----021013666554431000223677769999998047999999999999859899999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=0.00011 Score=45.65 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=67.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-----------C
Q ss_conf 221000108999999998730035-----544559999999999998299998999999999972889-----------7
Q 000330 985 KLKQVELSNEQCVEMALLILNQDA-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-----------S 1048 (1652)
Q Consensus 985 ~le~~~~d~elWLelAl~~Lnq~~-----n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~-----------~ 1048 (1652)
=|+..|.+.+.|..++..++.... ...+.++.|+..|.++|+++|+++.+|+.++..|..++. -
T Consensus 23 al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~ 102 (145)
T d1zu2a1 23 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF 102 (145)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98618831089999999998762133336778878889999999887301205877668999987010113578898867
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12899999998509988999999983589766412359999999998620
Q 000330 1049 VGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1098 (1652)
Q Consensus 1049 eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~vLe~las 1098 (1652)
..+.++|++|++++|+|...+ ...+ .+.+|++.+.+..+
T Consensus 103 ~~A~~~~~kal~l~P~~~~~~---~~L~--------~~~ka~~~~~e~~k 141 (145)
T d1zu2a1 103 DLATQFFQQAVDEQPDNTHYL---KSLE--------MTAKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH---HHHH--------HHHTHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHH---HHHH--------HHHHHHHHHHHHHH
T ss_conf 876312110002598889999---9999--------99997978999998
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00024 Score=43.49 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 9999999873003554455999999999999829999899999999997288971289999999850998899
Q 000330 995 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1067 (1652)
Q Consensus 995 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~ 1067 (1652)
++..+|.-++.. ++|+.|+..+.++|+++|+++.+|+.++.+|..++.-.++...|++|++++|+|..
T Consensus 64 ~~~nla~~y~k~-----~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~ 131 (170)
T d1p5qa1 64 SHLNLAMCHLKL-----QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131 (170)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHH-----HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 999999998864-----21101100000001002231034677799998722299999999999972989899
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.58 E-value=0.00031 Score=42.77 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999999829999899999999997288971289999999850998899
Q 000330 1015 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1067 (1652)
Q Consensus 1015 dAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~ 1067 (1652)
+.|+..+..||+++|+++.+|+.++..|..++...++...|++|++++|+|-.
T Consensus 84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 136 (153)
T d2fbna1 84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 01110100010000000124677689999968999999999999982989899
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00023 Score=43.63 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999998520498999999999971102770899999989
Q 000330 1390 GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1431 (1652)
Q Consensus 1390 alLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1431 (1652)
-.||.+|++ .|++++|...|++||+.+|++ ..+++.-.
T Consensus 76 ~~Lg~~y~~--~g~~~~A~~~~~~aL~~~P~~--~~A~~l~~ 113 (122)
T d1nzna_ 76 FYLAVGNYR--LKEYEKALKYVRGLLQTEPQN--NQAKELER 113 (122)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
T ss_conf 999999999--731699999999999769098--99999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.37 E-value=0.00069 Score=40.39 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999997139799999999999939984148--98999985102687509999999982999983
Q 000330 1250 IWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1311 (1652)
Q Consensus 1250 Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~ 1311 (1652)
..|+..+++...|+..|.++++..|.++.. .+.-+|+.+++ -.+|+..|+.++.++|+|..
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~l~P~n~~ 133 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQNKA 133 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHH
T ss_conf 9998776220110002232220131048899988999988278-99999999999985989899
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0018 Score=37.69 Aligned_cols=93 Identities=6% Similarity=0.011 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999999997288971289999999850998899----999998358976641235999999999862039999301212
Q 000330 1034 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1109 (1652)
Q Consensus 1034 lWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa 1109 (1652)
.+..++..|+..++-.++..+|.+|++++|.+.. ++..|...+ .|++|+..+.++.... +.....-.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l~-~~~~~~~~ 76 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCRELCEKAIEVG-RENREDYR 76 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHH-HHSTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 99999999998599999999999998849645899986889998818--------6077899999999868-01278898
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 03799999999987706899999999
Q 000330 1110 CILDLFLQMLQCFCMSGNTEKAIQRI 1135 (1652)
Q Consensus 1110 ~iLDILL~LvqLY~qSGnydKAI~tl 1135 (1652)
.+-.++..+.+.+...+++++||..+
T Consensus 77 ~~a~~~~~lg~~~~~~~~~~~A~~~~ 102 (128)
T d1elra_ 77 QIAKAYARIGNSYFKEEKYKDAIHFY 102 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89999999999999938899999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.00085 Score=39.81 Aligned_cols=53 Identities=9% Similarity=-0.147 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHH------------HHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 5445599999999999982999989------------9999999997288971289999999850
Q 000330 1009 NKLEGMKKALSLLSRALEADPTSEI------------LWITYLLIFYSNTNSVGKDDMFSYSVKH 1061 (1652)
Q Consensus 1009 n~~g~ydAALdLLsrALEINPtSae------------lWy~Ll~lY~~~~~~eea~emlekAVel 1061 (1652)
...|+|+.|+..|.++|+++|+.+. +|..++..|..+++-.++...+++|+++
T Consensus 20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~ 84 (156)
T d2hr2a1 20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 84 (156)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 98599999999999999868442010200121027999999999999828630015766435530
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.01 Score=32.51 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=57.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999973994799999999999650102561112011102689999999999985222233221135779999999
Q 000330 1317 WNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSL 1396 (1652)
Q Consensus 1317 W~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~L 1396 (1652)
++++...+.+.++++.|+...++.+. ........ .....+.| -.||.++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~--------------~~~~~~~~------~~~~~~~l-----------~~Lg~~~ 56 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALR--------------QLDEGEIS------TIDKVSVL-----------DYLSYAV 56 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHTTCCC------SSCHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--------------HHHHHHCC------CCCHHHHH-----------HHHHHHH
T ss_conf 99999999997799999999999999--------------88653014------76478999-----------9872688
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 985204989999999999711027708999999898881
Q 000330 1397 HRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1435 (1652)
Q Consensus 1397 yq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1435 (1652)
++ .|++++|...|++||+.+|.+ ..+++|.++|-.
T Consensus 57 ~~--~g~~~~A~~~y~~aL~l~P~~--~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 57 YQ--QGDLDKALLLTKKLLELDPEH--QRANGNLKYFEY 91 (95)
T ss_dssp HH--TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 86--577398887887798869297--999999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.70 E-value=0.015 Score=31.45 Aligned_cols=117 Identities=12% Similarity=-0.026 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999873003554455999999999999829999899999999997288971289999999850998899999998
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1073 (1652)
Q Consensus 994 elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1073 (1652)
+.++..+..... .|+++.|...|.+||++.|...-.++......... .......+..|. ..++..|.
T Consensus 12 ~~~~~~g~~~~~-----~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~--r~~l~~~~~~a~------~~la~~~~ 78 (179)
T d2ff4a2 12 VAEKTAGVHAAA-----AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPF--ATALVEDKVLAH------TAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHH--HHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHH------HHHHHHHH
T ss_conf 999999999998-----87999999999999863861311257631899999--999999999999------99999998
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 358976641235999999999862039999301212037999999999877068999999999630
Q 000330 1074 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1139 (1652)
Q Consensus 1074 nsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1139 (1652)
..+ .|+.|+..+.++...+ |.. .+.+..++.+|...|++..|+..+.++.
T Consensus 79 ~~g--------~~~~Al~~~~~al~~~-P~~-------e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 79 ACG--------RASAVIAELEALTFEH-PYR-------EPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HTT--------CHHHHHHHHHHHHHHS-TTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HCC--------CCHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 879--------9057899999999849-851-------9999999999998557999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.44 E-value=0.012 Score=32.00 Aligned_cols=130 Identities=10% Similarity=-0.016 Sum_probs=81.3
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 7139799999999999939984148-989999851026875099999999829999833789999999999973994799
Q 000330 1255 VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1333 (1652)
Q Consensus 1255 ~LEDse~A~~LfdklLk~~P~dveL-~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~a 1333 (1652)
..++.+.++..+.+.++..|.++++ ..++..+...+-.++|+..|+.++...|+... +|..|.......+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~----~~~~l~~ll~a~~~---- 79 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----GASQLRHLVKAAQA---- 79 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHHHHHH----
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCC----
T ss_conf 8889999999999999978999999999999999879999999999999986997389----99999999983466----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999965010256111201110268999999999998522223322113577999999998520498999999999
Q 000330 1334 AELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA 1413 (1652)
Q Consensus 1334 i~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDK 1413 (1652)
..++....+.......+ .+.. ...+....+.. .|+.++|...+++
T Consensus 80 -----------------~~~a~~~~~~~~~~~~p-------~~~~---------~~l~~a~~~~~--~gd~~~A~~~~~~ 124 (264)
T d1zbpa1 80 -----------------RKDFAQGAATAKVLGEN-------EELT---------KSLVSFNLSMV--SQDYEQVSELALQ 124 (264)
T ss_dssp -----------------HHHHTTSCCCEECCCSC-------HHHH---------HHHHHHHHHHH--HTCHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHCCCCC-------HHHH---------HHHHHHHHHHH--CCCHHHHHHHHHH
T ss_conf -----------------37899875444203586-------4799---------99999999996--7998999999999
Q ss_pred HHHHCCCCCHHHHHHH
Q ss_conf 9711027708999999
Q 000330 1414 ALKAAASEHFKHCVRE 1429 (1652)
Q Consensus 1414 ALkanp~N~~i~cLNN 1429 (1652)
++...|.. -..|++
T Consensus 125 a~e~~p~~--~~~~~~ 138 (264)
T d1zbpa1 125 IEELRQEK--GFLAND 138 (264)
T ss_dssp HHHHCCCC--CEEETT
T ss_pred HHHCCCCC--CCCCCC
T ss_conf 98339999--810015
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.012 Score=32.13 Aligned_cols=73 Identities=8% Similarity=-0.011 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 10899999999873003554455999999999999829999-------89999999999728897128999999985099
Q 000330 991 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1063 (1652)
Q Consensus 991 ~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-------aelWy~Ll~lY~~~~~~eea~emlekAVelnP 1063 (1652)
+..+-|.++...+..+ |+|+.|...|..||+++|.. +.++..++..|++.++-.++.+++++|++++|
T Consensus 3 Lsaddc~~lG~~~~~~-----g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTE-----ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp CCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 5699999999999997-----79999999999999988653014764789999872688865773988878877988692
Q ss_pred CCHHH
Q ss_conf 88999
Q 000330 1064 GSYAL 1068 (1652)
Q Consensus 1064 ~NY~L 1068 (1652)
++...
T Consensus 78 ~~~~a 82 (95)
T d1tjca_ 78 EHQRA 82 (95)
T ss_dssp TCHHH
T ss_pred CCHHH
T ss_conf 97999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.013 Score=31.84 Aligned_cols=77 Identities=5% Similarity=0.037 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 0108999999998730035544559999999999998299998-999999999972889712899999998509988999
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE-ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1068 (1652)
Q Consensus 990 ~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa-elWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~L 1068 (1652)
-...|..+.+|...+.+. ..++.+.|..+|..++..+|... ++||.++..|+++++-+.+..+|+++++..|+|-.-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~--~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKST--DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 988101999999998279--688999999999999854950599999999999998732999999999998239984999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.16 E-value=0.031 Score=29.37 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999999973994799999999
Q 000330 1316 IWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1316 aW~QLIq~al~~~n~d~ai~L~~~ 1339 (1652)
+|..+++.....++++.++..+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~ 92 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEA 92 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999999887990578999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.59 E-value=0.1 Score=25.92 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 9999999998770689999999996
Q 000330 1113 DLFLQMLQCFCMSGNTEKAIQRISR 1137 (1652)
Q Consensus 1113 DILL~LvqLY~qSGnydKAI~tl~r 1137 (1652)
.++..+..+|...|+++.||..+.+
T Consensus 101 ~a~~~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 101 SAVYSRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8775269999988888888999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=86.63 E-value=0.65 Score=20.53 Aligned_cols=95 Identities=11% Similarity=0.177 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHCCCCHH--
Q ss_conf 999999998730035544559999999999998299998999999999972----88971289999999850998899--
Q 000330 994 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYS----NTNSVGKDDMFSYSVKHNEGSYA-- 1067 (1652)
Q Consensus 994 elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~----~~~~eea~emlekAVelnP~NY~-- 1067 (1652)
+.|+.++..+.++ +++..|+..|.++.+. .++.+++.++.+|.. .+....+...+++|++..-....
T Consensus 3 ~~~~~lG~~~~~~-----~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~ 75 (265)
T d1ouva_ 3 KELVGLGAKSYKE-----KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 9999999999987-----7999999999999978--99999999999998099960569999875012221111112313
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99999835897664123599999999986203
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1099 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~vLe~las~ 1099 (1652)
|+.++.... .... .++.|+..|......
T Consensus 76 l~~~~~~~~-~~~~---~~~~a~~~~~~a~~~ 103 (265)
T d1ouva_ 76 LGNLYYSGQ-GVSQ---NTNKALQYYSKACDL 103 (265)
T ss_dssp HHHHHHHTS-SSCC---CHHHHHHHHHHHHHT
T ss_pred CCCCCCCCC-CCCH---HHHHHHHHHHHHHHH
T ss_conf 501224321-1212---367798887655432
|