Citrus Sinensis ID: 000337

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640---

MRMRMHGWRAGEEEGDRKREGRRRHMWTVPPRDSAILASVADGGSASPSSSSSLSSSPNSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKRERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDAPTKSAFSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKSSSSSQSHNNGQSCVGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAGVQRETVSSKNATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNSSGGSVEDTSVTNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPRTPIHEPLCDDNDSRVKSFPGDHSTDSTDDEHEKQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLSTEDKVSESTRGVETEAVEGSASNQSLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLKNVDEVKVEKADEVDSKSHVNQTEEQNSEWKSNAPMIREDRVVPHLGSAENEEKGNGKVDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISEGDKAQESTSTTIDAASSAVGVSDMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVPDSTSGKLGRPLLDIDLNVPDERVLEDLASRSSVQDTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGSNSASSESSWKRSRQSLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ

ccccccccccccccHHHHHcccccccccccccccHHHcccccccccccccccccccccccccEEEEcccEEEEcccEEEcccccccccEEEEEEEEccccccEEEEEEEEEccHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccHHcccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccc

ccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEccEEEEEcccccccEEEEEEEEEEcccccEEEEEEEEEcHHHHHHccccEccccccEEEEccccccccHHHEcccEEEEEcccccEcccccccEEEEEEEcccccHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccEcccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEccccccccccccccccc

mrmrmhgwrageeegdrkregrrrhmwtvpprdsaILASvadggsaspssssslssspnsvtffsqdgrkisvgdcalfkppqdsppfigIIRSLTAGKENKLTLSVNWLyrpaevklgkgflleaapneifysfhkdeipaasllhpckvaflpkgielpsgigsfVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEmhatvpsggrspkpmngptstsqlkpgsdgaqnsasfpsqvkgkkrergdqssepvkrersskmedgnsghsrtetNLKTEIAKITekgglvdydGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHkgkigdagsprdgdkSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEmdarprlpevphsgnrqtgasTEVAIKSLvtqpassktgavklcqgdaptksafsspvsvksaplpasgstdakdgqprnaasatgttdlpstpakdeksssssqshnngqscvgdhaktgglsgkedarssATVSMTLNKIsvgssrsrksvngypsstpagvqretvssknatlhrnsasdrpsqpsltcekaldvpvveganpkiivkipnrgrspaqnssggsvedtsvtnsrasspvlpekqnqFDRNFKEKNDALRADIssnmnsepwqsnvnkdaaacpdegsgspavlpdeqgsktgdnCRKVVEDlednslppgyefkdvklhessFSSMNALIESCVKYseanvsapagddiGMNLLASVAagemsksdvvspvgspprtpiheplcddndsrvksfpgdhstdstddehekqgidrnlwaknsdsnqdkpaggltghistspvdlqqsgdpcqentenSKEIIVaeetpdgagrnpeedkagfrvdadgapdgkqrisgplstedkvsestrgveteavegsasnqslefdgenkkgvseglnsgvkreqkpspitthsesvkgkdgellhtsgsgedmplknvdevkvekadevdskshvnqteeqnsewksnapmiredrvvphlgsaeneekgngkvdhrenlegkevkeelcagpalpevSTALRAQETGQLVRTGAVKLTIsegdkaqeststtidaassavgvsdmeakvefdlnegfdgddgkygessnfivpgcsgvvqqlvsplplpvtsvssslpssvtvaaaakgpfvppedllrskvelgwkgsaatsafrpaeprkilemplgatsisvpdstsgklgrplldidlnvpdervLEDLasrssvqdtvtasdhtnnrdgsrcevmgsksvrgsvgldldlnRAEELIdignystsngnkidvpvqpgtssggllngevnvrrdfdlndgpvlddcsaepsvfpqhprnvsqapvsglrlssadtvnfsswfprgntystiavpsvlpdrgeqpfpiiapcapqrmlvpstsgspfgpdvfrgpvlssspavpfpsapfqypvfpfgtsfplpsatfsggtttyvdsssggrfcfpavnsqlmgpagavpshfprpyvvslpdgsnsassessWKRSRQsldlnagpgvpdiegrdetsplvprqlsvagsqvlTEDQARMYQQMAgghfkrkepeggwdgykrpswq

mrmrmhgwrageeegdrkregrrrhmwtvpprdSAILASVADGGSASpssssslssspNSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMHATvpsggrspkpmnGPTSTSQlkpgsdgaqnsasfpsqvkgkkrergdqssepvkrersskmedgnsghsrtetnlkteiakitekgglvdydgVEKLVQLMVperndkkiDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKgkigdagsprdgdKSVEEFLLILLRALDKLPVNLNALQMCNIGKSvnhlrthknveiqkkarslVDTWKKRVEaemdarprlpevphsgnrqtgaSTEVAIKSLVtqpassktgAVKLCQGDaptksafsspvsvksaplpasgstdakdgqprnaasatgttdlpstpakdeksssssqshnngqscvgdhaKTGGLSGKEDARSSATVSMTLnkisvgssrsrksvngypsstpagvqretVSSKNATLHrnsasdrpsqpsltcekaldvpvveganpkiivkipnrgrspaqnssggsvedtsvtnsrasspvlpekqnqfdRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSpavlpdeqgsktgdNCRKVVEDlednslppgyEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPRtpiheplcddndsrVKSFPGdhstdstddehekQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIvaeetpdgagrnpeEDKAgfrvdadgapdgkqrisgplstedkvsestrgveteavegsasnqslefdgenKKGVSEGlnsgvkreqkpspitthsesvkgkdgellhtsgsgedmplknVDEVKVEKadevdskshvnqteeqnsewksnapmiREDRVVPHLgsaeneekgngkvdhrenLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTisegdkaqeststtidaassavgvsdMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWkgsaatsafrpaeprKILEmplgatsisvpdstsgklgrplldidlNVPDERVLEDlasrssvqdtvtasdhtnnrdgsrcevmgsksvrgsvgldlDLNRAEELIDIgnystsngnkidVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGSNSASSESSWKRSRQSLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAgghfkrkepeggwdgykrpswq

MRMRMHGWrageeegdrkregrrrHMWTVPPRDSAILAsvadggsaspssssslssspnsvtffsQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKRERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDAPTKSAFSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKsssssqshnngqsCVGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAGVQRETVSSKNATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNSSGGSVEDTSVTNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPRTPIHEPLCDDNDSRVKSFPGDHSTDSTDDEHEKQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDLQQSGDPCQENTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLSTEDKVSESTRGVETEAVEGSASNQSLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLKNvdevkvekadevdskSHVNQTEEQNSEWKSNAPMIREDRVVPHLGSAENEEKGNGKVDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISEGDKAQEststtidaassaVGVSDMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGvvqqlvsplplpvtsvssslpssvtvaaaaKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVPDSTSGKLGRPLLDIDLNVPDERVLEDLASRSSVQDTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGpvlssspavpfpsapfQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGsnsassesswkrsrqsLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ

*********************************************************************KISVGDCALFKP***SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMH*******************************************************************************IAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKI************VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTW**********************************************************************************************************************************************************************************************************LDVPVVEGANPKIIVK********************************************************************************************************************************NALIESCVKYSEAN********IGMNLL**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YGESSNFIVPGCSGVVQQLVSPLPLPV*******************************VELGW*******************************************I*************************************************GLDLDLNRAEELIDIGNY*************************VNVRRDFDL************************************DTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAP******************************FPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMG********************************************************************************************************

**************************************************************FFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLG***LLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKT************************************************************************************IAKITEKGGLV*YDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHK*******************LLILLRALDKL*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

*********************RRRHMWTVPPRDSAILAS*********************VTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMHATVP********************************************************************ETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKI*********DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGDA****************************************************************CVGDHAKTG************TVSMTLNKIS***********************************************TCEKALDVPVVEGANPKIIVKIPNRG*****************************KQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAG**************PRTPIHEPLCDDNDSRVKSF****************GIDRNLWAKNSDSNQDKPAGGLTGHISTS****************NSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISG**************************QSLEFDGE*******************************KDGELLHTSGSGEDMPLKNVDEVKV***********************SNAPMIREDRVVPHLGS**********VDHRENLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVKLTISE*******************GVSDMEAKVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLP***********VTVAAAAKGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVPDSTSGKLGRPLLDIDLNVPDERVLEDLA*****************RDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQPGTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPSVFPQHPRNVSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSL*******************LDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ

************************************************************VTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMHATVP******************************************************************RT*TNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGK**********DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAE*************************************************************************************************************************************************************************************************************PKIIV*IPN**************************************************************************************************************************SSMNALIE*CVKYSE********DDI**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AKVEFDLNEGFDG**********************LVSPLPLPVTSVSSSLPSSVTVAAAAKGPFVPPEDLLRSKVELGWK**************************************PLLDIDLNVPDERVLEDLAS************************************DLDLNRAEELIDIGNYSTSNGNKIDVPVQP**************RR*FD*NDGPVLDDCSAE**************************VNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGSNS********R*RQSLDLNAGPGVPDIEGRDETSPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYK*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1643	2.2.26 [Sep-21-2011]
Q3UHR0		2643	BAH and coiled-coil domai	yes	no	0.048	0.029	0.341	6e-05
Q9P281		2608	BAH and coiled-coil domai	yes	no	0.048	0.030	0.341	0.0001
F4KFC7		353	Probable mediator of RNA	no	no	0.034	0.161	0.368	0.0009

>sp\|Q3UHR0\|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Bahcc1 PE=2 SV=2	Back alignment and function desciption

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 71   ISVGDCALF-KPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPN 129
            + +GDCA+F    + + P+IG I SL     + + + V W Y P E KLGK        N
Sbjct: 2519 LRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGK--RQSDGKN 2576

Query: 130  EIFYSFHKDEIPAASLLHPCKV 151
             ++ S H+DE    ++ H C+V
Sbjct: 2577 ALYQSCHEDENDVQTISHKCQV 2598

Mus musculus (taxid: 10090)

>sp\|Q9P281\|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3	Back alignment and function description

>sp\|F4KFC7\|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1643
359491606		1631	PREDICTED: uncharacterized protein LOC10	0.958	0.965	0.592	0.0
255540753		1712	DNA binding protein, putative [Ricinus c	0.964	0.925	0.588	0.0
255540759		1651	conserved hypothetical protein [Ricinus	0.965	0.961	0.588	0.0
147817646		1688	hypothetical protein VITISV_021504 [Viti	0.958	0.933	0.576	0.0
356518993		1613	PREDICTED: uncharacterized protein LOC10	0.953	0.971	0.543	0.0
356507216		1701	PREDICTED: uncharacterized protein LOC10	0.950	0.918	0.548	0.0
449441029		1606	PREDICTED: uncharacterized protein LOC10	0.950	0.971	0.541	0.0
449526349		1599	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.948	0.974	0.540	0.0
297819422		1613	hypothetical protein ARALYDRAFT_485166 [	0.950	0.968	0.507	0.0
186510768		1613	BAH and TFIIS domain-containing protein	0.951	0.969	0.509	0.0

>gi\|359491606\|ref\|XP_003634295.1\| PREDICTED: uncharacterized protein LOC100248456 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1748 bits (4528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1004/1695 (59%), Positives = 1194/1695 (70%), Gaps = 120/1695 (7%)

Query: 5    MHGWRAGEEEGDRKREGRRRHMWTVPPRDSAILASVADGGSASPSSSSSLSSSPNSVTFF 64
            MHG R GE   DRKR    RHMW+VP R +A   SVAD  S S ++S            F
Sbjct: 1    MHG-REGE---DRKRS---RHMWSVPTRGTA---SVADDSSTSTANS------------F 38

Query: 65   SQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLL 124
             +DGR ISVGDCALFKP QDSPPFIGIIR LT+ K N + L VNWLYRP+EVKLGKG LL
Sbjct: 39   LKDGRNISVGDCALFKPSQDSPPFIGIIRWLTSSK-NNIRLGVNWLYRPSEVKLGKGILL 97

Query: 125  EAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLT 184
            EAAPNE+FY+FHKDEIPAASLLHPCKVAFLPKG ELPSGI SFVCR+V+D+ NKCLWWLT
Sbjct: 98   EAAPNEVFYTFHKDEIPAASLLHPCKVAFLPKGDELPSGISSFVCRRVFDVANKCLWWLT 157

Query: 185  DQDYINE---EVDQLLYKTHIEMHATVPSGGRSPKPMNGPTSTSQLKPGSDGA-QNSA-S 239
            DQDYINE   EVD+LLYKT IEMHATV  GGRSPKPM+GPTSTSQ+KPGSD + QN A S
Sbjct: 158  DQDYINERQEEVDKLLYKTRIEMHATVQPGGRSPKPMSGPTSTSQIKPGSDSSTQNCATS 217

Query: 240  FPSQVKGKKRERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDG 299
             PSQVKGKKRERGDQ SEP+KRER SK +DG+SGHSR E+  K+EIAKITE+GGLVD +G
Sbjct: 218  LPSQVKGKKRERGDQGSEPIKRERPSKTDDGDSGHSRPESVWKSEIAKITERGGLVDSEG 277

Query: 300  VEKLVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKG 359
            VE+LVQLM PER +KKIDL+ RS+LAGV+AAT+K+DCL  FVQLRGL V DEWLQE HKG
Sbjct: 278  VERLVQLMQPERAEKKIDLIGRSILAGVIAATEKYDCLGRFVQLRGLPVLDEWLQEAHKG 337

Query: 360  KIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKA 419
            KIGD  SP+D DKSVEEFLL+LLRALDKLPVNL ALQMCNIGKSVNHLR+HKN+EIQKKA
Sbjct: 338  KIGDGSSPKDSDKSVEEFLLVLLRALDKLPVNLQALQMCNIGKSVNHLRSHKNLEIQKKA 397

Query: 420  RSLVDTWKKRVEAEMD---------------ARPRLPEVPHSGNRQTGASTEVAIKSLVT 464
            RSLVDTWKKRVEAEM+               +RPRL EV H GNR +G S+E+A+KS VT
Sbjct: 398  RSLVDTWKKRVEAEMNINDAKSGSSQAVAWSSRPRLSEVSHGGNRHSGGSSEIAMKSSVT 457

Query: 465  QPASSKTGAVKLCQGDAPTKSAFSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLP 524
            Q +SSKT  VKL QG+   KS  +S    KSA  PAS ST  KDGQ R  A A   +D P
Sbjct: 458  QLSSSKTAPVKLVQGEI-AKSGSASQGFTKSATSPASVSTSLKDGQTR-VAGAGNASDPP 515

Query: 525  STPAKDEKSSSSSQSHNNGQSCVGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRK 584
             T  +DEKSSSSSQSHNN QSC  DHAKT G SGKEDARSS  +SM+++K S G+SR RK
Sbjct: 516  LTTVRDEKSSSSSQSHNNSQSCSSDHAKTVGFSGKEDARSSTAMSMSVSKTSGGASRHRK 575

Query: 585  SVNGYPSSTPAGVQRETVSSKNATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVK 644
            SVNGYP    +GVQRET SS++++  RN AS++ SQ  LTC+KA DVP VEG + K+IVK
Sbjct: 576  SVNGYPGPAVSGVQRETGSSRSSSFQRNPASEKVSQSGLTCDKAFDVPTVEGNSHKLIVK 635

Query: 645  IPNRGRSPAQNSSGGSVEDTSVTNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNS 704
            IPNRGRSPAQ++SGGS ED S+ NS+ASSPVL  K +Q DRN KEK+D  RA+ +S++N+
Sbjct: 636  IPNRGRSPAQSASGGSFEDPSMVNSQASSPVLSGKHDQSDRNLKEKSDVYRANNTSDVNT 695

Query: 705  EPWQSNVNKDAAACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKL 764
            E WQSN  KDA    DEG GSPA LPDE+ S+TGD+ RK+    +  S   G E K  KL
Sbjct: 696  ESWQSNDFKDAMTGSDEGDGSPATLPDEERSRTGDDTRKI----KTASSSSGIEPKSGKL 751

Query: 765  HESSFSSMNALIESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSPVGSPPR-T 823
             E+SF+SMNALIESCVK  EAN S    DD+GMNLLASVAAGEM+K + VSP  SP R T
Sbjct: 752  VEASFTSMNALIESCVK-CEANASVSVVDDVGMNLLASVAAGEMAKRESVSPADSPLRNT 810

Query: 824  PIHEPLCDDNDSRVKSFPGDHSTDSTDDEH------EKQGIDRNLWAKNSDSNQDKPAGG 877
             + E     ND++ K    D   + +   +      EKQG     WAK  D     P   
Sbjct: 811  AVIEDSSAGNDAKSKPTGDDILREQSQSNYGPTGDTEKQG----FWAK--DGLHHLPKHA 864

Query: 878  LTG-----HISTSPVDLQQSGDPCQENTENSKEIIVAEE------------TPDGAGRNP 920
            LT      HI+++ +DL ++ + C E    S E +V               + D  G+  
Sbjct: 865  LTNRENNEHINSTSIDLVRTSELCSEINRKSDETVVGASVTASPVSTTEKGSDDEQGKQL 924

Query: 921  EEDKAGFR-VDADGAPDGKQRISGPLSTEDKVSESTRGVETEAVEGSASNQSLEFDGENK 979
             E KA    V+ DG PD K ++S     EDKV++    VE +  E  +S  SLE DGE K
Sbjct: 925  HEKKAAVDGVNVDGIPDTKPKVSSSSLAEDKVNDVLPCVELK--EEQSSYASLEPDGE-K 981

Query: 980  KGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLKNVDEVKVEKADEV 1039
              V+EGLN+    EQKP      S+ VKG + E+   SGSG+D+  +NVD++K EKADE+
Sbjct: 982  NNVNEGLNT----EQKPPASMIPSDFVKGTEKEVPLPSGSGKDLVPENVDQMKAEKADEI 1037

Query: 1040 DSKSHVNQTEEQNSEWKSNAPMIREDRVVPHLGSAENEEKGNGKVDHRENLEGKEVKEEL 1099
               +H NQ EEQ  E K++A    EDR                +    ENL  KEV E  
Sbjct: 1038 CVSNHANQMEEQRIEPKNHASTAAEDR----------------RELMEENLGNKEVLENC 1081

Query: 1100 CAGPALPEVSTALRAQETGQLVRTGAVKLTISEGDKAQESTSTTIDAAS-SAVGVSDMEA 1158
             +G A  + S      E  QLVR    KL   E D+ +E  STT DA+S SA G SD++ 
Sbjct: 1082 SSGQAPYKQSPTFPVLEVEQLVRPRGSKLPGDEADETEECASTTADASSFSATGGSDVDG 1141

Query: 1159 KVEFDLNEGFDGDDGKYGESSNFIVPGCSGVVQQLVSPLPLPVTSVSSSLPSSVTVAAAA 1218
            K+EFDLNEGF+ DDGK+GE  N   PGCS  V  L+SPLP PV+S+SS LP+S+TV AAA
Sbjct: 1142 KLEFDLNEGFNADDGKFGEPVNVGTPGCSAAV-HLISPLPFPVSSMSSGLPASITVTAAA 1200

Query: 1219 KGPFVPPEDLLRSKVELGWKGSAATSAFRPAEPRKILEMPLGATSISVP-DSTSGKLGRP 1277
            KGPFVPP+DLLRSK ELGWKGSAATSAFRPAEPRK LEMPL A  ++VP D+TSGK  RP
Sbjct: 1201 KGPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKTLEMPLNA--LNVPSDATSGKQNRP 1258

Query: 1278 LLDIDLNVPDERVLEDLASRSSVQDTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLN 1337
            LLD DLN+PDER+LED+ SRSS Q+T +  D  ++RD +    MGS  +R S GLDLDLN
Sbjct: 1259 LLDFDLNMPDERILEDMTSRSSAQETSSTCDLVSSRDLAHDRPMGSAPIRCSGGLDLDLN 1318

Query: 1338 RAEELIDIGNYSTSNGNKIDVPVQP--GTSSGGLLNGEVNVRRDFDLNDGPVLDDCSAEP 1395
            +++E+ D+G +S SN +++ VP+ P   +SS G  NGEV VRRDFDLN+GPVLD+ SAEP
Sbjct: 1319 QSDEVTDMGQHSASNSHRLVVPLLPVKSSSSVGFPNGEVVVRRDFDLNNGPVLDEVSAEP 1378

Query: 1396 SVFPQHPRN--VSQAPVSGLRLSSADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPII 1453
            S F QH R+   SQ PV+ LR+++ D  NFSSWFP  N YS + +PS++PDR EQPFPI+
Sbjct: 1379 SSFSQHARSSMASQPPVACLRMNNTDIGNFSSWFPPANNYSAVTIPSIMPDR-EQPFPIV 1437

Query: 1454 APCAPQRMLVPSTSGSPFGPDVFRGPVLSSSPAVPFPSAPFQYPVFPFGTSFPLPSATFS 1513
            A   PQR++  ST G+PF PDV+RGPVLSSSPAVPFPS PFQYPVFPFGT+FPLP ATFS
Sbjct: 1438 ATNGPQRIMGLSTGGTPFNPDVYRGPVLSSSPAVPFPSTPFQYPVFPFGTNFPLPPATFS 1497

Query: 1514 GGTTTYVDSSSGGRFCFPAVNSQLMGPAGAVPSHFPRPYVVSLPDGSNSASSESSWKRSR 1573
            G +T++ DSSS GR CFPAVNSQL+GPAG VPSH+PRPYVV+L DGSNS   ES+ +  R
Sbjct: 1498 GSSTSFTDSSSAGRLCFPAVNSQLIGPAGTVPSHYPRPYVVNLSDGSNSGGLESNRRWGR 1557

Query: 1574 QSLDLNAGPGVPDIEGRDET-SPLVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEG 1632
            Q LDLNAGPG P+I+GR+E+   L  RQLSVA SQ L  +QARMY   AGG  KRKEPEG
Sbjct: 1558 QGLDLNAGPGGPEIDGREESVVSLASRQLSVASSQALAGEQARMY-HAAGGVLKRKEPEG 1616

Query: 1633 GWD----GYKRPSWQ 1643
            GWD     YK+ SWQ
Sbjct: 1617 GWDTERFSYKQSSWQ 1631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255540753\|ref\|XP_002511441.1\| DNA binding protein, putative [Ricinus communis] gi\|223550556\|gb\|EEF52043.1\| DNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255540759\|ref\|XP_002511444.1\| conserved hypothetical protein [Ricinus communis] gi\|223550559\|gb\|EEF52046.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|147817646\|emb\|CAN60153.1\| hypothetical protein VITISV_021504 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356518993\|ref\|XP_003528159.1\| PREDICTED: uncharacterized protein LOC100788512 [Glycine max]	Back alignment and taxonomy information

>gi\|356507216\|ref\|XP_003522365.1\| PREDICTED: uncharacterized protein LOC100780436 [Glycine max]	Back alignment and taxonomy information

>gi\|449441029\|ref\|XP_004138286.1\| PREDICTED: uncharacterized protein LOC101210258 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449526349\|ref\|XP_004170176.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224819 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297819422\|ref\|XP_002877594.1\| hypothetical protein ARALYDRAFT_485166 [Arabidopsis lyrata subsp. lyrata] gi\|297323432\|gb\|EFH53853.1\| hypothetical protein ARALYDRAFT_485166 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|186510768\|ref\|NP_190388.2\| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi\|186510770\|ref\|NP_850669.2\| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi\|332644839\|gb\|AEE78360.1\| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi\|332644840\|gb\|AEE78361.1\| BAH and TFIIS domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1643
TAIR\|locus:2097915		1613	SUO "'shuttle' in chinese" [Ar	0.936	0.953	0.487	0.0
TAIR\|locus:2097925		1611	AT3G48060 [Arabidopsis thalian	0.930	0.949	0.477	0.0
TAIR\|locus:2123136		587	AT4G11560 [Arabidopsis thalian	0.081	0.228	0.390	9.2e-17
TAIR\|locus:2135907		1000	AT4G24200 [Arabidopsis thalian	0.110	0.182	0.316	6.1e-13
TAIR\|locus:2040209		380	AT2G25120 [Arabidopsis thalian	0.125	0.544	0.274	8.9e-11
TAIR\|locus:2121601		360	AT4G23120 [Arabidopsis thalian	0.079	0.363	0.333	1.3e-08
FB\|FBgn0036203		1514	Muc68D "Mucin 68D" [Drosophila	0.383	0.416	0.184	8.2e-08
DICTYBASE\|DDB_G0268640		784	DDB_G0268640 "unknown" [Dictyo	0.382	0.801	0.196	1.3e-07
TAIR\|locus:2097134		380	AT3G43990 [Arabidopsis thalian	0.079	0.344	0.300	5e-07
UNIPROTKB\|Q9NZW4		1301	DSPP "Dentin sialophosphoprote	0.362	0.457	0.183	1.8e-06

TAIR\|locus:2097915 SUO "'shuttle' in chinese" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3445 (1217.8 bits), Expect = 0., P = 0.
 Identities = 784/1608 (48%), Positives = 985/1608 (61%)

Query:    66 QDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLE 125
             +DGRKISVGDCALFKPPQD PPFIGIIR + A +E+KL L VNWLYRP E+KLGKG LLE
Sbjct:    46 KDGRKISVGDCALFKPPQDCPPFIGIIRLIIAEEEDKLKLGVNWLYRPTELKLGKGILLE 105

Query:   126 AAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTD 185
             A PNE+FYSFH+D IPAASLLHPCKVAFLP+G+ELPSGI SFVCR+VYD+TN+ LWWLTD
Sbjct:   106 AEPNELFYSFHEDNIPAASLLHPCKVAFLPRGVELPSGISSFVCRRVYDVTNERLWWLTD 165

Query:   186 QDYINE---EVDQLLYKTHIEMHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPS 242
             QDYI++   EVD+LL KT  EMH T+  GGRSPK MN PT TSQ K   DG QNS SF S
Sbjct:   166 QDYIDDRQLEVDKLLCKTRSEMHTTLQQGGRSPKSMNSPT-TSQPK---DGIQNSNSFLS 221

Query:   243 QVKGKKRERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEK 302
             Q KG+KRER D  SE VKRERSS+++D  SG  RTE+ LK+EI K TEKGGLVD +GVEK
Sbjct:   222 QGKGRKRERMDHGSESVKRERSSRVDDSGSGPLRTESGLKSEILKFTEKGGLVDSEGVEK 281

Query:   303 LVQLMVPERNDKKIDLVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIG 362
             LVQLM+PERN+KKIDLV R++LAGVVAATDKFDCL+ FVQLRGL VFDEWLQEVHKGK+G
Sbjct:   282 LVQLMLPERNEKKIDLVGRAILAGVVAATDKFDCLSRFVQLRGLPVFDEWLQEVHKGKVG 341

Query:   363 DAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSL 422
             D GSP+D D+ V++FLL+LLRALDKLPVNLNALQ CNIGKSVNHLR+HKN EI KKARSL
Sbjct:   342 DGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIGKKARSL 401

Query:   423 VDTWKKRVEAEMDARP------RLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKL 476
             VDTWKKRVEAEMDA+         P     G R +G S E A K+  +   +SK+ +VK 
Sbjct:   402 VDTWKKRVEAEMDAKSGSNQGVSWPGRLSHGGRHSGGSAE-ANKTSSSHLHASKSVSVKQ 460

Query:   477 CQGDAPTKSAFSSPVSVKSAPLPASGSTDAKDGQPRNAASATGTTDLPSTPAKDEKXXXX 536
              Q +   K   +SP S +SAP P SG   +KDGQ RNA  A G +++ +   KDEK    
Sbjct:   461 -QVENNLKCVATSPGSTRSAPSPGSGGNVSKDGQQRNAG-AGGVSEVLAA-VKDEKSSSS 517

Query:   537 XXXXXXXXXCVGDHAKTGGLSGKEDARSSATVSMTLNKISVGSSRSRKSVNGYPSSTPAG 596
                      C  +HAKTG L GKEDARSS T   TL K S GSSR RKS N +  S+ + 
Sbjct:   518 SQSHNNSQSCSSEHAKTGNLCGKEDARSS-TAGSTLKKCSGGSSRHRKSNNVFQGSSSSA 576

Query:   597 VQRETVSSKNATLHRNSASDRPSQPSLTCEKALDVPVVEGANPKIIVKIPNRGRSPAQNS 656
               R    S++ + HRN  S++ SQ SLT EK L+VP+ EG+  K+IVK+PNRGRSPAQ+ 
Sbjct:   577 SPRGAGLSRSFSSHRNVPSEKISQSSLTSEKTLEVPLTEGSGNKLIVKLPNRGRSPAQSV 636

Query:   657 SGGSVEDTSVTNSRASSPVLPEKQNQFDRNFKEKNDALRADISSNMNSEPWQSNVNKDAA 716
             SGGS+ED +  NSR SSPV   KQ   D N +EKN + R ++SS +N+E WQSN  KD  
Sbjct:   637 SGGSLEDPAPVNSRVSSPVHAVKQELCDNNGREKNHSYRPNVSSVLNAESWQSNELKDIL 696

Query:   717 ACPDEGSGSPAVLPDEQGSKTGDNCRKVVEDLEDNSLPPGYEFKDVKLHESSFSSMNALI 776
                 E +GSP V  DE+G    D+ +        +SL  G EFK  + H  + SSMNALI
Sbjct:   697 TGSQEAAGSPLVAGDERGGDLKDSDKASGNVKGTSSL--GNEFKSGERHGGTLSSMNALI 754

Query:   777 ESCVKYSEANVSAPAGDDIGMNLLASVAAGEMSKSDVVSP-VGSPPRTPIHEPLCDDNDS 835
             ESCV+YSE N S    DD+GMNLLASVAA EMSKS V SP V  PP + ++E     N++
Sbjct:   755 ESCVRYSETNASLAGSDDVGMNLLASVAADEMSKSPVASPSVSQPPNSVMNENSTVGNNT 814

Query:   836 RVKSFPG----DHST--DSTDDEHEKQGIDRNLWAKNSDSNQDKPAGGLTGHISTSPVDL 889
             ++ +  G     H     S   E  +Q +  +     S+   +   G      ++   DL
Sbjct:   815 KLMASDGLPHEQHQAVCTSVSTEQGEQHVSSSGTQLESEIKNESKTGDRDKSSNSDTEDL 874

Query:   890 QQSGDPCQENTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLS-TE 948
             Q+  D C E+ +NS  ++ +   P  A +    +K     D+    D K  +      T 
Sbjct:   875 QRLVDQCLESNDNSDGVVASPALPTKAVK----EKILNDSDSGELKDIKTDVKSEADCTS 930

Query:   949 DKVSESTRGVETEAVEGSASNQSLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKG 1008
             D        + TE  + S    S+  +    +GV +      K+E+KP P    SE VK 
Sbjct:   931 DSTKRVASSMLTECRDVSKKVDSVAVEQTPLEGVDDD-----KKEEKP-PTALSSELVKK 984

Query:  1009 KDGELLHTSGSGEDMPLXXXXXXXXXXXXXXXSKSHVNQTEEQNSEWKSNAPMIREDRVV 1068
              + ++  +SG   DM                 + +H++Q + +  +   +  +      +
Sbjct:   985 VEEDVPVSSGISRDMD-AVSIGRPITEMVNNVAFNHMDQKDVKKIKQDCDTSV----GAI 1039

Query:  1069 PHLGSAENEEKGNGKVDHRE-NLEGKEVKEELCAGPALPEVSTALRAQETGQLVRTGAVK 1127
                 +  +     GKV+  E NLE  EVKE      A P +S     +E   L R    K
Sbjct:  1040 KDTSAGLDSSVTKGKVEPVEGNLENSEVKERYSGLRATPGLSP----KEAEDLERPNGPK 1095

Query:  1128 LTISEGDKAQEXXXXXXXXXXXXVGVS---DMEAKVEFDLNEGFDGDDGKYGESSNFIVP 1184
              + ++GD+A E               S   +M+A+VEFDLNEGFDGDD K+G+S+NF   
Sbjct:  1096 TSDADGDEAGECTSAARDASSVSAAASAGSEMDARVEFDLNEGFDGDDAKHGDSNNFSGS 1155

Query:  1185 G-CSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPFVPPEDLLRSKVELGWKGSAAT 1243
                +                               KGPFVPPEDLLR+K  +GW+GSAAT
Sbjct:  1156 VFLTPTPLQPVKTLPFPVAPVSSGTRASITVAAAAKGPFVPPEDLLRNKGAVGWRGSAAT 1215

Query:  1244 SAFRPAEPRKILEMPLGATSISVPD-STS-GKLGRPLLDIDLNVPDERVLEDLASRSSVQ 1301
             SAFRPAEPRK  ++ L   + S  D STS GK  R  LD DLNVPDERVLEDLAS+ S  
Sbjct:  1216 SAFRPAEPRKPQDVLLSINNTSTSDASTSAGKQTRTFLDFDLNVPDERVLEDLASQRSGN 1275

Query:  1302 DTVTASDHTNNRDGSRCEVMGSKSVRGSVGLDLDLNRAEELIDIGNYSTSNGNKIDVPVQ 1361
              T   SD TN+ D  R  VMGS     S GLDLDLN+ ++  D+ +Y+ ++ +++D   Q
Sbjct:  1276 PTNCTSDITNSFDQVRSGVMGSALDHSSGGLDLDLNKVDDSTDMISYTMNSSHRLDSSFQ 1335

Query:  1362 PGT--SSGGLLNGEVNVRRDFDLNDGPVLDDCSAEPS-VFPQHPRN--VSQAPVSGLRLS 1416
                  S+GG        RRDFDLNDGPV DD + EPS V  QH R+   SQ  +SG+R++
Sbjct:  1336 QVKLPSTGG--------RRDFDLNDGPVGDDAAVEPSMVLNQHSRSGLPSQPSLSGIRVN 1387

Query:  1417 SADTVNFSSWFPRGNTYSTIAVPSVLPDRGEQPFPIIAPCAPQRMLVPSTSGSPFGPDVF 1476
               +  +FS+WFP  N YS +++P ++P+RG+QPFP+IA   PQRML P+T  S F P+ +
Sbjct:  1388 GENMASFSTWFPAANAYSAVSMPPIMPERGDQPFPMIATRGPQRMLGPTTGVSSFTPEGY 1447

Query:  1477 RGXXXXXXXXXXXXXXXXQYPVFPFGTSFPLPSATFSGGTTTYVDSSSGGRFCFPAVNSQ 1536
             RG                QYPVFPFG SFP+ SA F G +T ++DSSS GR CFP VNSQ
Sbjct:  1448 RGPVLSSSPAMPFQSTTFQYPVFPFGNSFPVTSANFPGASTAHMDSSSSGRACFPGVNSQ 1507

Query:  1537 LMGPAGAVPSHFPRPYVVSLPDGXXXXXXXXXXXX-XXXXLDLNAGPGVPDIEGRDETSP 1595
             ++GP   VPS++PRPY+V LP+G                 LDLN+GPG  + EGRDE S 
Sbjct:  1508 ILGPGVPVPSNYPRPYIVGLPNGGSNGGVLDNGAKWFRSGLDLNSGPGGHETEGRDE-ST 1566

Query:  1596 LVPRQLSVAGSQVLTEDQARMYQQMAGGHFKRKEPEGGWDGYKRPSWQ 1643
             LV RQLS + S  L EDQARMYQ M+GG  KRKEPEGGWDGY++ SWQ
Sbjct:  1567 LVARQLSSSASLPLKEDQARMYQ-MSGGVLKRKEPEGGWDGYRQSSWQ 1613

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0031053 "primary miRNA processing" evidence=IMP

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IDA

TAIR\|locus:2097925 AT3G48060 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2123136 AT4G11560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135907 AT4G24200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040209 AT2G25120 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121601 AT4G23120 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0268640 DDB_G0268640 "unknown" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2097134 AT3G43990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1643
cd04713		146	cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homol	3e-62
smart00439		121	smart00439, BAH, Bromo adjacent homology domain	7e-22
cd04370		123	cd04370, BAH, BAH, or Bromo Adjacent Homology doma	2e-19
smart00509		75	smart00509, TFS2N, Domain in the N-terminus of tra	2e-18
cd00183		76	cd00183, TFIIS_I, N-terminal domain (domain I) of	1e-17
pfam08711		51	pfam08711, Med26, TFIIS helical bundle-like domain	1e-14
cd04714		121	cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homolo	3e-14
pfam01426		120	pfam01426, BAH, BAH domain	1e-13
TIGR01385		299	TIGR01385, TFSII, transcription elongation factor	3e-06
cd04720		179	cd04720, BAH_Orc1p_Yeast, BAH, or Bromo Adjacent H	5e-06
cd04717		121	cd04717, BAH_polybromo, BAH, or Bromo Adjacent Hom	3e-05

>gnl\|CDD\|240064 cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

 Score =  208 bits (531), Expect = 3e-62
 Identities = 69/141 (48%), Positives = 86/141 (60%), Gaps = 3/141 (2%)

Query: 55  SSSPNSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPA 114
                  T F +DG K  + DC L  P  D  P+I II+ +   +E  L L V WLYRP 
Sbjct: 5   KKKKCHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPE 64

Query: 115 EVKLGKGFLLEAA-PNEIFYSFHKDEIPAASLLHPCKVAFLPKG--IELPSGIGSFVCRK 171
           E++  KG   +A  P E+FYSFH+DE+PA S+LHPCKVAF+PKG  I L  G   F+ R+
Sbjct: 65  EIEKKKGGNWKAEDPRELFYSFHRDEVPAESVLHPCKVAFVPKGKQIPLRKGHSGFIVRR 124

Query: 172 VYDITNKCLWWLTDQDYINEE 192
           VYD  NK LW LTDQDY +E 
Sbjct: 125 VYDNVNKKLWKLTDQDYEDER 145

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 146

>gnl\|CDD\|214664 smart00439, BAH, Bromo adjacent homology domain	Back alignment and domain information

>gnl\|CDD\|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)	Back alignment and domain information

>gnl\|CDD\|197766 smart00509, TFS2N, Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)	Back alignment and domain information

>gnl\|CDD\|238107 cd00183, TFIIS_I, N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme	Back alignment and domain information

>gnl\|CDD\|204037 pfam08711, Med26, TFIIS helical bundle-like domain	Back alignment and domain information

>gnl\|CDD\|240065 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins	Back alignment and domain information

>gnl\|CDD\|216495 pfam01426, BAH, BAH domain	Back alignment and domain information

>gnl\|CDD\|233390 TIGR01385, TFSII, transcription elongation factor S-II	Back alignment and domain information

>gnl\|CDD\|240071 cd04720, BAH_Orc1p_Yeast, BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p	Back alignment and domain information

>gnl\|CDD\|240068 cd04717, BAH_polybromo, BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1643
KOG1886		464	consensus BAH domain proteins [Transcription]	100.0
cd04713		146	BAH_plant_3 BAH, or Bromo Adjacent Homology domain	99.97
cd04716		122	BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom	99.92
cd04717		121	BAH_polybromo BAH, or Bromo Adjacent Homology doma	99.9
cd04714		121	BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain,	99.89
cd04370		123	BAH BAH, or Bromo Adjacent Homology domain (also c	99.89
PF01426		119	BAH: BAH domain; InterPro: IPR001025 The BAH (brom	99.88
smart00439		120	BAH Bromo adjacent homology domain.	99.88
cd04760		124	BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain	99.87
cd04715		159	BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom	99.87
cd04709		164	BAH_MTA BAH, or Bromo Adjacent Homology domain, as	99.87
cd04710		135	BAH_fungalPHD BAH, or Bromo Adjacent Homology doma	99.86
cd04721		130	BAH_plant_1 BAH, or Bromo Adjacent Homology domain	99.86
cd04712		130	BAH_DCM_I BAH, or Bromo Adjacent Homology domain,	99.85
cd04708		202	BAH_plantDCM_II BAH, or Bromo Adjacent Homology do	99.84
cd04720		179	BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do	99.82
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	99.76
cd04719		128	BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d	99.74
cd04711		137	BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai	99.66
smart00509		75	TFS2N Domain in the N-terminus of transcription el	99.38
cd00183		76	TFIIS_I N-terminal domain (domain I) of transcript	99.32
KOG1827		629	consensus Chromatin remodeling complex RSC, subuni	99.25
TIGR01385		299	TFSII transcription elongation factor S-II. This m	99.18
PF08711		53	Med26: TFIIS helical bundle-like domain; InterPro:	99.11
KOG1105		296	consensus Transcription elongation factor TFIIS/Co	98.75
KOG3554		693	consensus Histone deacetylase complex, MTA1 compon	98.7
PLN02976		1713	amine oxidase	97.09
KOG1793		417	consensus Uncharacterized conserved protein [Funct	96.01
KOG2821		433	consensus RNA polymerase II transcription elongati	94.57
PF11467		106	LEDGF: Lens epithelium-derived growth factor (LEDG	92.34
COG5139		397	Uncharacterized conserved protein [Function unknow	86.77

>KOG1886 consensus BAH domain proteins [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.3e-39  Score=378.48  Aligned_cols=440  Identities=22%  Similarity=0.207  Sum_probs=379.1

Q ss_pred             cCcccccccCCCcccccccccccCCCC-CCCCCCCCCCCCCceeEEEECCEEEee-CCEEEEcCCC-CCCCeEEEEEEEE
Q 000337           20 EGRRRHMWTVPPRDSAILASVADGGSA-SPSSSSSLSSSPNSVTFFSQDGRKISV-GDCALFKPPQ-DSPPFIGIIRSLT   96 (1643)
Q Consensus        20 ~~k~k~~W~~~~~~~~Ig~s~~~~gk~-~~~~~~~~~~s~kyY~Sf~iDGeeYkV-GDcVLVkped-d~pPYIArI~~Iw   96 (1643)
                      .++-+..|++.+.+.++|++.+..|++ .+++         +|.+|.+.|..|.. +|+|++.+++ +.+||||+|++||
T Consensus         7 ~~~~~~~~~~~~~a~~~g~a~~~qGv~~~k~~---------h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~   77 (464)
T KOG1886|consen    7 EPKLKSELRPRDEASSMGDANKEQGVGGVKSL---------HFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIY   77 (464)
T ss_pred             cccccccCCccchhhhhhhhhhhccccccccc---------cccceeeccCcccccCcceeecCCCCCCCCeeEEEeeee
Confidence            456778899999999999999999999 4555         57888888887777 9999999886 6899999999999


Q ss_pred             ecCC-CcEEEEEEEEeccccccCCccc-ccCCCCCeeEEcCCcCccCccccccccEEEecCCCccCCC--CCCeEEEEEE
Q 000337           97 AGKE-NKLTLSVNWLYRPAEVKLGKGF-LLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPS--GIGSFVCRKV  172 (1643)
Q Consensus        97 edkd-Gev~VrVqWFYRPeET~lgkg~-~~~sDPnELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp~--g~dtFFCRr~  172 (1643)
                      .+.. +.++++|+|||||+|+..+.+. |-..+++||||++|+|++++++|.++|.|+++..|.++++  +...|+||+.
T Consensus        78 a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~~~~~~f~~r~v  157 (464)
T KOG1886|consen   78 AQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNRVGHESFICRRV  157 (464)
T ss_pred             ccccCCCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeeccccccccccCCCCCcccccc
Confidence            8766 5899999999999999875544 4456788999999999999999999999999999999995  4799999999


Q ss_pred             EeCCCcEeccCCccccchh---hhhHHHHhhhcccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCcCcccccccc
Q 000337          173 YDITNKCLWWLTDQDYINE---EVDQLLYKTHIEMHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKR  249 (1643)
Q Consensus       173 YD~~~KrF~~LPDedyI~c---Ecdkwfh~tCl~m~A~~Q~gg~sP~~l~~ps~~~~lk~~sd~~qn~~sf~s~~kgkkr  249 (1643)
                      ||..++.||++.+.+|..|   +++.++.++|.+++...++.......++-+...|| +..++      +-+++.+..++
T Consensus       158 Yd~~~~~~~~~~~~~~~~~~k~e~d~~~~kt~~~~~~~~~p~~~~t~~~~~~~~~~~-~s~~~------~~~r~ss~~~~  230 (464)
T KOG1886|consen  158 YDAVTSKLRKLRDGDFGDGQKLEIDMLVPKTGPRRGTLPDPKKVQTLNAAASKRSQQ-KSEIS------SLSRASSSVDG  230 (464)
T ss_pred             cccccccccCccccchhcccccCCccchhhhcccCCCCCCccccccccccccceecc-ccccc------ccccccccccc
Confidence            9999999999999999998   99999999999999998888887777777776666 55444      33566788999


Q ss_pred             ccCcCCCCccccccCccccCCCCCCCccchhhHHHHhhhhccCCccchhhHHHHHHhhcccccccccccccchhhhHHHH
Q 000337          250 ERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVA  329 (1643)
Q Consensus       250 eR~~q~~~~~kr~~~~k~dd~~~~~~~~~~~lk~ei~~l~~~GGl~~~e~V~klv~LM~~~~~~kk~~L~~R~~l~~Vi~  329 (1643)
                      ++.+-....+.|.+..|+.+.-...+.-..-.-+++..-+++|++..-+.|..+..||+++....+.||.++..++.++.
T Consensus       231 ~~~e~~~~~t~~~~~~k~~g~~~~~v~~~~~~~s~~~~~~~~~~~~p~~~v~~~~~le~~s~~s~a~d~~~~~~~~~~l~  310 (464)
T KOG1886|consen  231 EILESFDLLTGRSDRDKVLGKLLEVVWQNSCSTSEAKPAGDQGSLWPNPSVSPCGALEQPSHASLAKDLESYLGLRETLV  310 (464)
T ss_pred             ccccCCCCCCCcccccccccccchhhccccccccccCCCcccccCCCCcccchhhhhhhhhhhhHhhhhhhhhhhhhHHH
Confidence            99999999999999999998777766445556778888899999999999999999999999998999999988888877


Q ss_pred             hccchhhHHHHHHHhchhhHHHHHHHHhhccCCCCCCCCCCCCChHHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccC
Q 000337          330 ATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRT  409 (1643)
Q Consensus       330 ~T~~~d~L~~Fvq~~Gl~vL~eWLqe~~K~k~gd~~sp~~~dks~ee~lLeLLraLk~lPvTlelLksT~IGktVnkLRK  409 (1643)
                      .+=.-+||-+|.+++|..+..+|.|++|..+-.++.++.+.++-+.+..+.++..|..++..++++...++++.+++|+-
T Consensus       311 ~~~k~~~~l~~~~ln~~~~~~e~~~~l~~p~~p~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~  390 (464)
T KOG1886|consen  311 LLLKGQALLKPEPLNPGETKPEPKQELHPPSFPDGQSSPSSMKLNDDDYDGLCVGLELTAGSLYLYCGQEGLICAGHLPC  390 (464)
T ss_pred             hhhcchhhhccccCCCcccCchhhhhccCCCCCCCccCccccccCchhHHHHHHhhhhhccchhhhcccccceeccccCC
Confidence            77779999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCcccCCCCCCCCCCccccccccccccCCCCCCcccc
Q 000337          410 HKNVEIQKKARSLVDTWKKRVEAEMDARPR------LPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKL  476 (1643)
Q Consensus       410 H~n~eI~kLAk~LVkkWKk~V~~e~~~kp~------~~e~~~~g~~~~~~~~~~~~k~~~s~~s~sk~~s~k~  476 (1643)
                      |..++|..-+..+|..|+.++...+..++.      .+|---.+.|+++.+.+ +.+.......+.+..++|.
T Consensus       391 ~~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~q~~~~~~k~~~~~ret~~~~e-a~~~~~~~~~a~~~~~~k~  462 (464)
T KOG1886|consen  391 PMLPEVKLSPVAAVHREGLLLAPSSVPKGTPFQHPPWPEKRLCSPRETGVNGE-AICGVLPLLVAHAGTTCKG  462 (464)
T ss_pred             CCCCCcCcccccccchhhhcccceeccCCCCccCCCChhhcccCccccCCchh-cccCCchhhhhcccccccC
Confidence            999999999999999999999988865544      44444455566676665 4444444555555555553

>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants	Back alignment and domain information

>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2	Back alignment and domain information

>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins	Back alignment and domain information

>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)	Back alignment and domain information

>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation	Back alignment and domain information

>smart00439 BAH Bromo adjacent homology domain	Back alignment and domain information

>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins	Back alignment and domain information

>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins	Back alignment and domain information

>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains	Back alignment and domain information

>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1	Back alignment and domain information

>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants	Back alignment and domain information

>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p	Back alignment and domain information

>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)	Back alignment and domain information

>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme	Back alignment and domain information

>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>TIGR01385 TFSII transcription elongation factor S-II	Back alignment and domain information

>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription	Back alignment and domain information

>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]	Back alignment and domain information

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]	Back alignment and domain information

>PLN02976 amine oxidase	Back alignment and domain information

>KOG1793 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2821 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A [Transcription]	Back alignment and domain information

>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis	Back alignment and domain information

>COG5139 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1643
1w4s_A		174	Polybromo, polybromo 1 protein; BAH, bromo-associa	8e-27
3nfq_A		170	Transcription factor IWS1; SPN1, RNA polymerase II	2e-19
2xpp_A		145	IWS1, ECU08_0440; transcription, elongation, histo	2e-18
4dov_A		163	ORC1, origin recognition complex subunit 1; DNA re	1e-17
1wjt_A		103	Transcription elongation factor S-II protein 3; fo	1e-16
1pqv_S		309	STP-alpha, transcription elongation factor S-II, D	2e-12
3swr_A		1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	2e-09
3swr_A		1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	3e-06
3av4_A		1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	5e-09
3av4_A		1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	3e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A Length = 170	Back alignment and structure

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A Length = 145	Back alignment and structure

>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A* Length = 163	Back alignment and structure

>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1 Length = 103	Back alignment and structure

>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A Length = 309	Back alignment and structure

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002	Back alignment and structure

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002	Back alignment and structure

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330	Back alignment and structure

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1643
d1eo0a_		77	a.48.3.1 (A:) Transcription elongation factor TFII	4e-17
d1wjta_		103	a.48.3.1 (A:) Transcription elongation factor S-II	1e-16
d1m4za_		217	b.34.12.1 (A:) Origin-recognition complex protein	3e-14

>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77	Back information, alignment and structure


class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor TFIIS N-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 369 DGDKSVEEFLLILLRALDK-LPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWK 427
           + +KS +  +L +L  LDK        L+   +G  VN  +   NVEI K  + ++ +WK
Sbjct: 14  EKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73

Query: 428 KRV 430
             +
Sbjct: 74  DAI 76

PyMOL of d1eo0a_

>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103	Back information, alignment and structure

>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1643
d1m4za_		217	Origin-recognition complex protein 120kDa subunit,	99.69
d1wjta_		103	Transcription elongation factor S-II protein 3 {Mo	99.33
d1eo0a_		77	Transcription elongation factor TFIIS N-domain {Ba	99.27
d2b4jc1		81	PC4 and SFRS1-interacting protein, PSIP1 {Human (H	94.97

>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.6e-18  Score=141.18  Aligned_cols=128  Identities=20%  Similarity=0.113  Sum_probs=100.9

Q ss_pred             CCCCEEEEEECCEEEEECCEEEECCCCCCCCEEEEEEEEEECCCC-CEEEEEEEEECCCCCCCC----------------
Q ss_conf             887246899989899519989992899999938999999723798-389999999535445687----------------
Q 000337           57 SPNSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKEN-KLTLSVNWLYRPAEVKLG----------------  119 (1643)
Q Consensus        57 ~~k~YqSf~iDGeeYkVGDcVLVkpedd~pPYIARI~~IwedkdG-ev~VrVqWFYRPEET~lG----------------  119 (1643)
                      +...|-....||.+|++||+|||+++...++||++|.+|-.+..+ ...+-+.||+|..|+.-.                
T Consensus        39 ~~~~~~~r~~D~~e~~~GD~Vlvk~~~~~~~~v~iI~ei~~~~~~~~~e~~~~~~lr~~e~~~~~~~~~~~~~~~w~~~p  118 (217)
T d1m4za_          39 KTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRP  118 (217)
T ss_dssp             -CEEEEEETTTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCC
T ss_pred             CCCEEEEEECCCEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCHHEEEEECCCCHHHHCCCHHHHHCCCCEEEECCC
T ss_conf             77689887208838844889999479999735899966314764210003442002044434310111015422461581


Q ss_pred             -----CCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCEEEEEEEEECCCCEECCCC
Q ss_conf             -----555457898825972984755865101331998369985588---98872899998947996851479
Q 000337          120 -----KGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLT  184 (1643)
Q Consensus       120 -----kr~~l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~ey~eLp---~g~dtFFCR~~YD~~tKrF~~LP  184 (1643)
                           .+......+||||+|+++|+|++++|++||+|+...+|..+.   ...++||||+.||+..+.|..++
T Consensus       119 ~e~~~~k~r~~~~~~ElflT~~~d~i~~~~I~~k~~V~s~~ef~~~~~~~~~~~~F~cr~~~D~~~~~f~~id  191 (217)
T d1m4za_         119 LNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDIN  191 (217)
T ss_dssp             HHHHHHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECC
T ss_pred             HHHHHHCCCCCCCCCEEEECCCCCEEEHHHEEEEEEEECHHHHCCHHHCCCCCCEEEEEEEECCCCCCEEECC
T ss_conf             4543111001167550576385350054540335799528993000211577975999989758878046644

PyMOL of d1m4za_

>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure