Citrus Sinensis ID: 000342
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1634 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BL06 | 1588 | Inactive ubiquitin carbox | yes | no | 0.186 | 0.191 | 0.317 | 4e-36 | |
| Q70EL1 | 1684 | Inactive ubiquitin carbox | yes | no | 0.186 | 0.180 | 0.314 | 8e-36 | |
| Q70EK8 | 1073 | Inactive ubiquitin carbox | no | no | 0.184 | 0.280 | 0.306 | 8e-36 | |
| Q6IE24 | 1588 | Inactive ubiquitin carbox | yes | no | 0.186 | 0.191 | 0.311 | 2e-35 | |
| P15975 | 1069 | Inactive ubiquitin carbox | no | no | 0.187 | 0.286 | 0.304 | 3e-34 | |
| Q9FPS4 | 859 | Ubiquitin carboxyl-termin | no | no | 0.168 | 0.320 | 0.232 | 2e-06 |
| >sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2 | Back alignment and function desciption |
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Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 159/343 (46%), Gaps = 39/343 (11%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIA 1361
GL NE G+ +CFLN +Q LWHL FR F R + H +G+ C+ CAL IF +
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIFRRSF--RQLTTHKCMGDSCIFCALKGIFNQFQCS 89
Query: 1362 STDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSD 1420
S E V P+ +LR AL+ + D FQ M+DA+E + +H +++D
Sbjct: 90 S-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIAD 138
Query: 1421 TESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALR 1480
E+ E C T CI H F M +FE+ C SCG S L + H I+ +AL
Sbjct: 139 -ETKEDIC------TAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQMVHYISTTALC 191
Query: 1481 TMKVMCAE-------SSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTT 1532
+ E S ELL N M C C + I +L P + T
Sbjct: 192 NQAICMLEKREKPSPSMFGELLQNASTMGDLRNC---PSNCGERIRIRRVLMNAPQIITI 248
Query: 1533 VLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCF 1588
L W + +D+ +L D+ +R D + + S LV ++CYYG+HY F
Sbjct: 249 GLVWDSEHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTF 306
Query: 1589 AYSHDQERWIMYDDKTVKVVGS-WSDVLSMCERGHLQPQVLFF 1630
+ +W+ +DD VK +G W DV++ C +GH QP +L +
Sbjct: 307 FFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLY 349
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Has no peptidase activity. Mus musculus (taxid: 10090) |
| >sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2 | Back alignment and function description |
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| >sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1634 | ||||||
| 225456629 | 1653 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.981 | 0.691 | 0.0 | |
| 297734043 | 1552 | unnamed protein product [Vitis vinifera] | 0.935 | 0.984 | 0.693 | 0.0 | |
| 255540879 | 1617 | conserved hypothetical protein [Ricinus | 0.979 | 0.990 | 0.696 | 0.0 | |
| 449441049 | 1594 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.984 | 0.611 | 0.0 | |
| 356565061 | 1611 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.988 | 0.607 | 0.0 | |
| 356513561 | 1581 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.983 | 0.617 | 0.0 | |
| 186510760 | 1568 | Ubiquitin carboxyl-terminal hydrolase-re | 0.935 | 0.974 | 0.614 | 0.0 | |
| 297819400 | 1571 | hypothetical protein ARALYDRAFT_485153 [ | 0.933 | 0.970 | 0.613 | 0.0 | |
| 186510762 | 1606 | Ubiquitin carboxyl-terminal hydrolase-re | 0.958 | 0.975 | 0.593 | 0.0 | |
| 186510764 | 1607 | Ubiquitin carboxyl-terminal hydrolase-re | 0.962 | 0.978 | 0.594 | 0.0 |
| >gi|225456629|ref|XP_002266656.1| PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 2271 bits (5886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1151/1664 (69%), Positives = 1342/1664 (80%), Gaps = 41/1664 (2%)
Query: 1 MGHKKKNTAPRSKQSPAAAVEAEP------CATPDATSNQTNTEPSEADVVVGG--GGAS 52
MGHKK+N APRSK S + A A + + N SE +V G S
Sbjct: 1 MGHKKRNLAPRSKGSQGSPGGAAVGGDGANSAEAEQSLNLNVGNSSEKSKMVTGVESEGS 60
Query: 53 TYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIID 112
Y AIKLECER+LTALRRGNH KALR+MKELS RH+NS + ALIHRVQGTVCVKVASIID
Sbjct: 61 AYSAIKLECERSLTALRRGNHNKALRIMKELSVRHDNSVHSALIHRVQGTVCVKVASIID 120
Query: 113 DLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172
D N+KQRHLKNAIE+AKKA ELSP+S+EFAHFYANLLYEAA++GKEYEEVV ECERAL+I
Sbjct: 121 DPNAKQRHLKNAIETAKKAVELSPNSIEFAHFYANLLYEAASEGKEYEEVVHECERALSI 180
Query: 173 ENPIDPAKESLQDESQQKILTADARIAHVQSELRSLIQKSNIASISTWMKNLGTGEEKFR 232
++P+DPAKESLQDESQQKI T +ARI HVQ+ELRSLIQKSNIASISTWMKNLG GEEKFR
Sbjct: 181 DSPVDPAKESLQDESQQKISTVEARIGHVQNELRSLIQKSNIASISTWMKNLGNGEEKFR 240
Query: 233 LIPIRRVAEDPMEVRLVQARRPNEIKKATKTPEERRKEIEVRVAAARLLQQKSETGQLYQ 292
LIPIRRV+EDPMEVRLVQ++RPNEIKKATKT EERRKEIEVRVAAARLLQQKS+ Q
Sbjct: 241 LIPIRRVSEDPMEVRLVQSKRPNEIKKATKTQEERRKEIEVRVAAARLLQQKSDAPQ--S 298
Query: 293 NNEGERN--VDSGSGGLEKRERERRKHGSNLRRNRSKEERRDFVRSYWNSMSLEMKRELL 350
+EG+R S G +R ERRK N R+ S ER+ VRSYWNSMS M+++LL
Sbjct: 299 QSEGDRTDKASETSSGPGQRVGERRK---NARKFGSTVERKVRVRSYWNSMSFNMRKDLL 355
Query: 351 KVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQ 410
K+++ D+KAH +S+KDGLAS VL+EAL+F E NK W+FWVCCRC EKF DSE HM HVVQ
Sbjct: 356 KIRISDLKAHFSSVKDGLASGVLSEALSFVEVNKVWKFWVCCRCGEKFKDSELHMQHVVQ 415
Query: 411 QHMGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFY 470
+HMGNLLPKMQ+VLPQ++DNEW EMI NCSWKPLDI AAVKML ++++K + E+ ++FY
Sbjct: 416 EHMGNLLPKMQSVLPQNIDNEWIEMIVNCSWKPLDISAAVKML-KNESKCQQNELIDEFY 474
Query: 471 SGNHIEECDDCFKDALDSSPEKENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYP 530
+GN+ EEC DCFKDA +SSPEK LG + ++ +D +K+ + RECDGN+ S Y
Sbjct: 475 TGNNTEECIDCFKDAWESSPEKGMLGDGCSCGNLVKSDSDKIPNQGSRECDGNEGSKAYL 534
Query: 531 LIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLASGSLLLN 590
L +SWP+ADD+ER KLLE+IH LFE+L++HKCL+ SHLSKV+Q+T DELQ +ASGS LLN
Sbjct: 535 LANSWPLADDSERAKLLEKIHVLFEMLIKHKCLAGSHLSKVMQFTTDELQGIASGSQLLN 594
Query: 591 HGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINS-IDDANSVSPSLEIKET 649
+GV QTP CICFLG QLRK++KFLQELSHAC L R S++ +S +DDANS++ +IKE
Sbjct: 595 YGVDQTPTCICFLGASQLRKLLKFLQELSHACGLARSSDKTSSAMDDANSLNRDFDIKEN 654
Query: 650 IVLNGDASCLLLDERLLSTELISGD---AFIDNV---TSANIRHENGVAEDADALLTWIF 703
++LNGDASCLLLDE LL TE S A D+ TS I +ENGV D +LL+WIF
Sbjct: 655 VLLNGDASCLLLDEHLLPTENTSTASHVAVTDDAATETSPIICNENGVQPDGGSLLSWIF 714
Query: 704 AGPSSGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDL 763
GPSS E L +WM +EEK++QGMEILQ LEKEFYHLQSLCERKCEHLSYEEALQA+EDL
Sbjct: 715 TGPSSVEQLASWMRIREEKSNQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQAVEDL 774
Query: 764 CLEEGKKRETVAEFGHRSYESVLRKRREELLESEND-MFISSRFESDAILNVLKEAEALN 822
CLEEGKKRE V +FG RS ESVLRKRREEL ESEN+ M IS+RFE DA++NVLKEAE+LN
Sbjct: 775 CLEEGKKRENVTDFGSRSLESVLRKRREELRESENEVMLISNRFELDAVINVLKEAESLN 834
Query: 823 VNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAIQRQKEQLSVELSKID 882
+NQFGYE+ Y+G+TS LCDLESGEDDDWR+KD LHQ+D CIEVAIQRQKEQLSVELSKID
Sbjct: 835 MNQFGYEEHYNGVTSHLCDLESGEDDDWRSKDFLHQMDACIEVAIQRQKEQLSVELSKID 894
Query: 883 ARIMRNVTSMQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAF 942
ARIMRNVT MQQLEL LEPVSA+DY+SI+LPL++S++RAHLEDLAEKDAT+KSDAAREAF
Sbjct: 895 ARIMRNVTGMQQLELTLEPVSAFDYRSIILPLLKSFMRAHLEDLAEKDATQKSDAAREAF 954
Query: 943 LAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSKPVGGNERHIVHDKTADLV 1002
LAELALDSKK A GGSD S+H +DKTKEK+K KEYRK KDSK GG+E+H++H T +
Sbjct: 955 LAELALDSKKSAIGGSDNSRHNHDKTKEKKKGKEYRKMKDSKGTGGSEQHVLHHVTTEQD 1014
Query: 1003 SFPVESDGDNPDSETVVSANGDDLKLQEEEFRRKIELEAEERKLEETLAYQRRIENEAKL 1062
S PV SDG++PDSE VVS N D+ K QEEE RRKIELEAEERKLEETL YQRRIENEAK
Sbjct: 1015 SSPVASDGEHPDSEPVVSVNDDNSKHQEEELRRKIELEAEERKLEETLEYQRRIENEAKQ 1074
Query: 1063 KHLAEQSKKSAQIFGENVAEGVCDTYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFEG 1122
KHLAEQ KK+ I E V G YL +++ D H+ + K +FP++F+G
Sbjct: 1075 KHLAEQRKKTTGIIPEKVVTGFSGGYLNPSADEHDAHEQLE-----HFKQKSQFPNSFDG 1129
Query: 1123 TPVNTANGAAVPIRSSPTSSFQNINTA---HHLSIKQGLPNGETPEDGFLPTDRRTGRRG 1179
P + +G V I S +S+ Q + + +H ++QGLPNG +P DG L ++RR GR+
Sbjct: 1130 MPRDVMDGTTVLIDSITSSANQRLRSTPSQYHAKVEQGLPNGGSPVDGVLLSERRIGRKT 1189
Query: 1180 RRHRSSNRSQDWKNQALSSEKENIGVR--------SDDSHLTGAAAP-YLGDGGTKTLRQ 1230
+R ++S + D K QA+SS KEN+ V + + G+ +LGD GTKTLRQ
Sbjct: 1190 KRQKNSTKLIDGKYQAVSSGKENVEVGISHIEDRVKEQIKIHGSGVNLHLGDNGTKTLRQ 1249
Query: 1231 LHAEEDDEERFQADLKQAVRQSLDTFQAHQKMPLVSSLRMTQNVSLEANKVAVLSNEVRS 1290
L AEEDDEERFQADLKQAVRQSLD +QAHQK+PLVSSLRM Q +S E + V + ++V
Sbjct: 1250 LQAEEDDEERFQADLKQAVRQSLDAYQAHQKLPLVSSLRMPQRMSHEVDDVGLSPDDVVI 1309
Query: 1291 ENVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCA 1350
+N++G D+ G GLKNEVGEYNCFLNVIIQSLWHLRRFR EF RS SEH+HVG+PCVVCA
Sbjct: 1310 KNMSGADMLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRNEFLGRSTSEHVHVGDPCVVCA 1369
Query: 1351 LYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHR 1410
LYEIFTALS+ASTDTR+EAVAP++LRIALSNLYPDSNFFQEAQMNDASEVL VIFDCLHR
Sbjct: 1370 LYEIFTALSVASTDTRREAVAPSALRIALSNLYPDSNFFQEAQMNDASEVLGVIFDCLHR 1429
Query: 1411 SFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSF 1470
SFT S++SDTESVESNCMGSWDC NS C+ HSLFGMDIFERMNCY+C LESRHLKYTSF
Sbjct: 1430 SFTSSSSISDTESVESNCMGSWDCANSICLAHSLFGMDIFERMNCYNCSLESRHLKYTSF 1489
Query: 1471 FHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVF 1530
FHNINASALRTMKVMCAESS DELLNLVEMNHQLACDP AGGC K NYIHHILSTPPHVF
Sbjct: 1490 FHNINASALRTMKVMCAESSFDELLNLVEMNHQLACDPEAGGCGKFNYIHHILSTPPHVF 1549
Query: 1531 TTVLGWQNTCESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYGQHYHCFAY 1590
T VLGWQNTCES DDITATLAAL+ EID+S+LYRGLDPK R+ LVSVVCYYGQHYHCFAY
Sbjct: 1550 TIVLGWQNTCESADDITATLAALNTEIDVSVLYRGLDPKNRYCLVSVVCYYGQHYHCFAY 1609
Query: 1591 SHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFEAVN 1634
SH+ ERW+MYDDKTVKV+GSW +VL+MCERGHLQPQVLFFEAVN
Sbjct: 1610 SHEHERWVMYDDKTVKVIGSWDNVLTMCERGHLQPQVLFFEAVN 1653
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734043|emb|CBI15290.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255540879|ref|XP_002511504.1| conserved hypothetical protein [Ricinus communis] gi|223550619|gb|EEF52106.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449441049|ref|XP_004138296.1| PREDICTED: uncharacterized protein LOC101212702 [Cucumis sativus] gi|449477596|ref|XP_004155067.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229576 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356565061|ref|XP_003550763.1| PREDICTED: uncharacterized protein LOC100800030 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356513561|ref|XP_003525481.1| PREDICTED: uncharacterized protein LOC100799759 [Glycine max] | Back alignment and taxonomy information |
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| >gi|186510760|ref|NP_190372.3| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi|332644822|gb|AEE78343.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297819400|ref|XP_002877583.1| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata] gi|297323421|gb|EFH53842.1| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|186510762|ref|NP_190374.4| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi|332644823|gb|AEE78344.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|186510764|ref|NP_001118788.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi|332644824|gb|AEE78345.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1634 | ||||||
| TAIR|locus:2097835 | 1607 | AT3G47910 [Arabidopsis thalian | 0.679 | 0.691 | 0.555 | 0.0 | |
| TAIR|locus:2097935 | 1568 | AT3G47890 [Arabidopsis thalian | 0.669 | 0.697 | 0.567 | 0.0 | |
| TAIR|locus:2200360 | 1147 | AT1G65120 [Arabidopsis thalian | 0.120 | 0.171 | 0.334 | 3.6e-66 | |
| TAIR|locus:2042072 | 1122 | AT2G27630 [Arabidopsis thalian | 0.146 | 0.213 | 0.342 | 1.8e-56 | |
| TAIR|locus:2042016 | 1106 | AT2G27650 [Arabidopsis thalian | 0.120 | 0.178 | 0.342 | 4.6e-54 | |
| TAIR|locus:2200350 | 1101 | AT1G65200 [Arabidopsis thalian | 0.129 | 0.191 | 0.318 | 5.6e-51 | |
| TAIR|locus:2200355 | 1094 | AT1G65110 [Arabidopsis thalian | 0.154 | 0.230 | 0.293 | 5.9e-44 | |
| TAIR|locus:2153157 | 1149 | AT5G51530 [Arabidopsis thalian | 0.121 | 0.172 | 0.321 | 8.3e-43 | |
| TAIR|locus:2035104 | 1136 | AT1G52450 [Arabidopsis thalian | 0.108 | 0.156 | 0.338 | 5.3e-42 | |
| TAIR|locus:2156161 | 1132 | AT5G61950 [Arabidopsis thalian | 0.158 | 0.228 | 0.302 | 1.8e-40 |
| TAIR|locus:2097835 AT3G47910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3054 (1080.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 639/1150 (55%), Positives = 785/1150 (68%)
Query: 498 SYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELL 557
++N ++ +G+ C + E ++S +P D WP++DD ER KLLE+I A FE L
Sbjct: 479 AWNDTTPDGDTCNGWNENESEE--EVKLSIAFPPPDGWPISDDPERAKLLEKIRAAFEQL 536
Query: 558 LRHKCLSASHLSKVIQYTMDELQSLASGSLLLNHGVGQTPMCICFLGVHQLRKIVKFLQE 617
+RHK L+ASH KVIQ+T+DELQ+L S S LN G+ ++P+CICFLG L KI+KFLQ+
Sbjct: 537 IRHKYLAASHHDKVIQFTLDELQNLPSVSQFLNRGLNKSPLCICFLGASHLSKILKFLQD 596
Query: 618 LSHACSLGRYSERINSIDDANSVSPSLEIKETIVLNGDASCXXXXXXXXXXXXIS----G 673
LS AC L RYSE+ N D+ N E+ E I+L+ + SC I G
Sbjct: 597 LSQACGLSRYSEQSNPHDEINFGDLGREVTEEILLDSEDSCLLMDEKLLGTECIQEKYMG 656
Query: 674 DAFIDNVT---SANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEIL 730
AF +NVT S +I + N V+ AD L+WIF GPSS E + +WM +KE+KT+QG+EI+
Sbjct: 657 SAF-NNVTIASSGDIANGNDVSSGADGFLSWIFTGPSSEEQVVSWMRTKEDKTNQGLEIM 715
Query: 731 QTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVXXXXX 790
Q LEKEFYHLQ+LCERKCEHLSYE ALQ +EDLCLEEG+KRET AEF H SYE+V
Sbjct: 716 QHLEKEFYHLQNLCERKCEHLSYEGALQTVEDLCLEEGRKRETSAEFTHESYETVLRKRR 775
Query: 791 XXXXXSENDM-FISSRFESDAILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDD 849
S++++ FISSRFE DAI NVLK+AE LN NQFGYE++Y +SQL DLESGE D+
Sbjct: 776 EELNESDHELLFISSRFELDAITNVLKDAETLNHNQFGYEESYGCTSSQLRDLESGEADE 835
Query: 850 WRNKDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSAYDYQS 909
W KD LH+ D+ IE+AIQ+QKEQLS ELS+IDA++MRNVT MQQLELKL PVS+ DYQ
Sbjct: 836 WGIKDSLHEADSFIEIAIQKQKEQLSAELSRIDAQMMRNVTGMQQLELKLGPVSSNDYQI 895
Query: 910 ILLPLVQSYLRAHLEDLAEKDATEKSDXXXXXXXXXXXXDSKKVARGGSDISKHTNDKTK 969
+LLPLV+SY+RAHLE LAEKDATEKSD DSKK ARG +D SK+T +K+K
Sbjct: 896 VLLPLVKSYMRAHLEALAEKDATEKSDAAREALLVELALDSKKEARGRNDNSKNTLEKSK 955
Query: 970 EKRKHKEYRKTKDSKPVGGNERHIVHDKTADLVS---FPVESDGDNPDSETVVSANGDDL 1026
+K+K K+ RK KD K G++ H AD V PV GD+ +++ +VS + L
Sbjct: 956 DKKKIKDTRKVKDMKATIGSD----HRSNADSVEHSPLPVAPVGDHSEAD-IVSEAVEAL 1010
Query: 1027 KLQEEEFXXXXXXXXXXXXXXXXXXYQRRIENEAKLKHLAEQSKKSAQIFGENVAEGVCD 1086
K +EEE+ YQRRIE+EAK KH+AEQ KK + NVA+ V
Sbjct: 1011 KEEEEEYKRQIELEEEERKLEKTLEYQRRIEDEAKEKHMAEQQKKYSSSVPMNVAKTV-- 1068
Query: 1087 TYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTPVNTANGAAVPIRSSPTSSFQNI 1146
Y G N++D + ++ + EG VNT NG P S+ S+ +
Sbjct: 1069 -YNGCTDNEVDYLVLQGQEKSINQEKRNGRLDDLEGASVNT-NGV-FP--STNHSAISDT 1123
Query: 1147 NTAHHLSIKQGLPNGETPEDGFLPTDXXXXXXXXXXXXXXXXQDWKNQALSSEKENIGVR 1206
++ ++ +PNG + G +D D K E EN +
Sbjct: 1124 AKVQNVKSQKVVPNGTAMQAGIFQSDQRTGRRTRRQKASNKLADGKYPVTPPETENS--K 1181
Query: 1207 SDDSHLTGAA-APYL---GDGGTKTLRQLHAEEDDEERFQADLKQAVRQSLDTFQAHQKM 1262
S S G + L GD GTKTLRQL AE+DDEERFQAD+++AV QSLD +Q + M
Sbjct: 1182 SQLSGTNGERHSETLRNNGDVGTKTLRQLQAEDDDEERFQADMQRAVLQSLDVYQGGRNM 1241
Query: 1263 PLVSSLRMTQNVSLEANKVAVLSNE-VRSENVNGIDVYGAGLKNEVGEYNCFLNVIIQSL 1321
S LR LE N LS++ + S + G+ ++G GL+NEVGEYNCFLNVIIQSL
Sbjct: 1242 --ASCLR----TPLEVNNDGGLSDDTMESRSSTGVTIFGTGLQNEVGEYNCFLNVIIQSL 1295
Query: 1322 WHLXXXXXXXXXXXPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381
W+L EH HVG+PCVVC+LYEIFTALS AS++ + E VAP+SLRIALSN
Sbjct: 1296 WNLELFRAEFLRSSTREHHHVGDPCVVCSLYEIFTALSAASSEKQNEPVAPSSLRIALSN 1355
Query: 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIV 1441
LYPDS+FFQEAQMNDASEVLAVIFDCLHRSF S+VSD +S +SNC GSWDC N CI
Sbjct: 1356 LYPDSSFFQEAQMNDASEVLAVIFDCLHRSFAQSSSVSDVDSSDSNCTGSWDCANRTCIA 1415
Query: 1442 HSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMN 1501
HSLFGMDIFE++NCYSCGLESRHLKYTSFFHNINASALRTMKV CAE+S DELLNLVEMN
Sbjct: 1416 HSLFGMDIFEQLNCYSCGLESRHLKYTSFFHNINASALRTMKVTCAENSFDELLNLVEMN 1475
Query: 1502 HQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISI 1561
HQLACDP GGC KLN+IHHIL+TPPHVFTTVLGWQNTCE+ +DI ATLAAL+ EIDISI
Sbjct: 1476 HQLACDPETGGCGKLNHIHHILTTPPHVFTTVLGWQNTCETVEDIAATLAALNTEIDISI 1535
Query: 1562 LYRGLDPKRRHSLVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERG 1621
+YRGLDPK +SLVSVVCYYGQHYHCFA+S + ++WIMYDDKTVKV+GSW DVLSMCERG
Sbjct: 1536 MYRGLDPKSTYSLVSVVCYYGQHYHCFAHSREHDQWIMYDDKTVKVIGSWIDVLSMCERG 1595
Query: 1622 HLQPQVLFFE 1631
HLQPQVL +E
Sbjct: 1596 HLQPQVLLYE 1605
|
|
| TAIR|locus:2097935 AT3G47890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200360 AT1G65120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042072 AT2G27630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042016 AT2G27650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200350 AT1G65200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200355 AT1G65110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2153157 AT5G51530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2035104 AT1G52450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2156161 AT5G61950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.4.19.12 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1634 | |||
| pfam04780 | 463 | pfam04780, DUF629, Protein of unknown function (DU | 1e-73 | |
| pfam04780 | 463 | pfam04780, DUF629, Protein of unknown function (DU | 3e-37 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-25 | |
| pfam04781 | 112 | pfam04781, DUF627, Protein of unknown function (DU | 1e-17 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 7e-17 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 2e-06 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 4e-06 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 0.002 |
| >gnl|CDD|203088 pfam04780, DUF629, Protein of unknown function (DUF629) | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 1e-73
Identities = 96/340 (28%), Positives = 162/340 (47%), Gaps = 21/340 (6%)
Query: 533 DSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLA-SGSLLLNH 591
WP+ADD ER KLL+ I L L K LS S V+Q+T+ L L S L +
Sbjct: 140 KDWPLADDEERSKLLKEIKLLLVSLCDLKILSCSLRDWVMQFTVKHLAKLEVSKQYLDDC 199
Query: 592 GVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDA-NSVSPSLEIKETI 650
+ +TP ICFL +L +I+KFL++L + + + A +S + +KE I
Sbjct: 200 SLVETPQSICFLECDELNQILKFLKQLK-----CERDDGTSLVCKAVDSFLDNSRVKEKI 254
Query: 651 VLNGDASCLLLDERLLSTELISGDAFIDNVT---SANIRHENGVAEDADALLTWIFAGPS 707
L+ S LLLD+RLL +E D D T H V D +L+W+F PS
Sbjct: 255 DLDPQFSFLLLDKRLLKSEEAPFD---DEGTINVFDPNAHYAKVHPQGDDILSWLFDYPS 311
Query: 708 SGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEE 767
+ + + +E + +L+ ++ L++ +K + L Y+ AL EDLC+ E
Sbjct: 312 VDKEFPSPI--REHNLDIWLAVLRAVQFTCRTLETKYAKKVQMLDYDAALTEAEDLCISE 369
Query: 768 GKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAILNVLKEAEALNVNQFG 827
++R + E SY S+LR + EEL+ ++D ++++ A+ +VL+ A +
Sbjct: 370 DERRNNLLEDQWSSYASLLRDKCEELVGRDDDNSLTTKLFLCAVRDVLEGASHPTFDFLD 429
Query: 828 YEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAI 867
E+ + + +L+S DD +H + + + +
Sbjct: 430 DEE----CMNLIRELKSLSDDIV--LKSIHLLKSVVTEKV 463
|
This family represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family. Length = 463 |
| >gnl|CDD|203088 pfam04780, DUF629, Protein of unknown function (DUF629) | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|147106 pfam04781, DUF627, Protein of unknown function (DUF627) | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1634 | |||
| PF04780 | 466 | DUF629: Protein of unknown function (DUF629); Inte | 100.0 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 99.97 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 99.97 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 99.97 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 99.97 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 99.97 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.97 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 99.96 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.94 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.94 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.94 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.93 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 99.92 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 99.92 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.9 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.89 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.87 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.84 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.79 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.57 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 98.18 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.9 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 96.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.65 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 95.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.12 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 94.79 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 94.74 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 94.6 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 94.44 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 94.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 94.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 94.29 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 94.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 93.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 93.8 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 93.66 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 92.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 92.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 92.74 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 92.53 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 92.42 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 92.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 91.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 91.51 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 91.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 91.26 | |
| PF08715 | 320 | Viral_protease: Papain like viral protease; InterP | 90.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 90.76 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 90.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 90.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 89.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 89.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 88.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 88.81 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 88.43 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 87.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 87.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 87.54 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 87.5 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 87.39 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 86.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 86.6 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 86.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 85.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 85.45 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 85.3 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 85.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 84.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 83.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 83.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 82.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 82.62 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 82.59 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 82.48 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 81.97 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 81.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 81.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 81.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 81.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 80.97 |
| >PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-126 Score=1131.23 Aligned_cols=463 Identities=47% Similarity=0.747 Sum_probs=440.1
Q ss_pred HHHHHhccCCHHHHhceeEeehHHHHHHhhhccCchhHHHHHHHHHHHHhcCceeEEecccchhccCChhHHHHhhhhhh
Q 000342 333 FVRSYWNSMSLEMKRELLKVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1634)
Q Consensus 333 ~vr~yW~~m~~e~kr~fL~V~i~~L~~~~~~~~~~~~~~~ls~al~fak~n~sW~fWiCp~C~~kF~d~~~~~~Hl~~~H 412 (1634)
+||+||++|++|+||+||+|+|++|++||.+++++.++++|++||+|||+|++|+|||||+|+++|+++++|++||+++|
T Consensus 2 ~vr~yW~sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 2 RVRSYWNSMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred chhHhhccCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccCCCCcCHHHHhhhhcCCcccccHHHHHHHhccccccccccccccccccCCccccccccccccCCCCccc
Q 000342 413 MGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDCFKDALDSSPEK 492 (1634)
Q Consensus 413 ~~~~~P~l~~~~p~~i~~~w~~~i~~~~W~Pvd~~aa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~c~kd~~~~~~~~ 492 (1634)
+++++|++++++||+|+++|++||.+|+|+|||++||++||||+++++++ |+ + |
T Consensus 82 ~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~--~~----~-----------~--------- 135 (466)
T PF04780_consen 82 PAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS--FV----Y-----------K--------- 135 (466)
T ss_pred hhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch--hh----h-----------h---------
Confidence 99999999999999999999999999999999999999999999999984 22 2 3
Q ss_pred ccccCCCCCCccCCCCccccccccccccCCCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCcccchhhhhHh
Q 000342 493 ENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVI 572 (1634)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Wpl~~d~er~klL~~I~~~~~~l~~~k~ls~s~~~~vi 572 (1634)
|| |+.+ ||||+|+||+|||++||.+|++|++||||||||++|||
T Consensus 136 -------~g------------------w~~~-----------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~vi 179 (466)
T PF04780_consen 136 -------NG------------------WSKD-----------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWVI 179 (466)
T ss_pred -------cC------------------CCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 33 3344 99999999999999999999999999999999999999
Q ss_pred hccHHHhhhhccccc-cccCccCCCcchhhccchhhHHHHHHHHHHHhhhhcCCccCccccccccCCCCCCcccceeeee
Q 000342 573 QYTMDELQSLASGSL-LLNHGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIV 651 (1634)
Q Consensus 573 ~~t~~~l~~~~s~~~-l~~~~l~~tp~~icfL~~~~L~~il~fl~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~vke~i~ 651 (1634)
+||++|||+|+++.+ |.||||++||||||||+|++|++||+||++|+ | .|+.+++.+++++++|+++++|||+|+
T Consensus 180 ~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~L~~Il~fL~~l~--~--~~~~~~~~v~~~~~~~~~~~~vkekI~ 255 (466)
T PF04780_consen 180 QFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQLNKILKFLQELK--C--RRDDGTSLVCRDVDSFWEGSRVKEKID 255 (466)
T ss_pred HhhHHHHhccCcchhhhhhccCCCCCceeEecCcHHHHHHHHHHHHHh--h--ccccCcccccccccccccccccceeee
Confidence 999999999996555 55999999999999999999999999999999 7 466777889999999999999999999
Q ss_pred ccCCcchhhhhhhhhhccccCCCcccccccccccccCCCCccCcCceeeeeccCCCCCcccccccchHHHhhhhhhhHHH
Q 000342 652 LNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQ 731 (1634)
Q Consensus 652 ~~~~~s~LllD~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~D~~~sWl~~~~s~~~~~~sw~~~~e~~~~~~~~vl~ 731 (1634)
||+|+|+||||+|||++++.+++++|+|.++.|++||++++|+||+||||||+||+++++|++|+++|+++++|||+|||
T Consensus 256 ld~~~S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~ 335 (466)
T PF04780_consen 256 LDSDFSCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLR 335 (466)
T ss_pred cCCccceeeechhhhccCCCccCcCCceeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999996655999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHhhccccccccccccchhh
Q 000342 732 TLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAI 811 (1634)
Q Consensus 732 ~~~~~~~~l~~~~~kk~~~l~~~~~l~~ve~~c~~E~~~r~~~~~~~~~~y~s~l~~~~e~l~~~~~~~~~~~~~~~~~i 811 (1634)
+|++||++|+++|+|||+||+||+||++||+||++|++||+++++|||++|||+||+|||||+++++|+|+++|+|+|||
T Consensus 336 ~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~v 415 (466)
T PF04780_consen 336 AVEKEFRTLQSKYEKKCEHLSYEEALQAVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDAV 415 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhccCCCCccccccCcccccccccCCCCCCcccccccccchhHHHHH
Q 000342 812 LNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVA 866 (1634)
Q Consensus 812 ~~vl~~~~~~~~~~f~~~e~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~v~~~ 866 (1634)
+|||++|++ |+|+|.+..+| +++|+|+++++.|| ++++++|+.|++|+.+
T Consensus 416 ~~Vl~~a~~---~~f~~~~~~~~-~~~i~~~~s~~~dd-~~~~~~~~l~s~v~~~ 465 (466)
T PF04780_consen 416 RDVLKEAST---PTFNFFGYEDC-TSLIRDLKSGESDD-RVKKSIHLLDSVVQFK 465 (466)
T ss_pred HHHHhhccc---CCCCCcccHHH-HHHHhcccccccch-HHHHHHHHHHHHHhhc
Confidence 999999999 78888886666 67799999999988 9999999999988743
|
A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family. |
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
| >PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein | Back alignment and domain information |
|---|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 96.1 bits (238), Expect = 6e-20
Identities = 105/673 (15%), Positives = 220/673 (32%), Gaps = 162/673 (24%)
Query: 404 HMHHVVQQHMGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKS--R 461
H HH + G + + +L D +DN K D+ +D KS
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDA----FVDNFDCK--DV--------QDMPKSILS 47
Query: 462 DTEVSEDFYSGNHIEECDDCFKDALDSSPEK-------ENLGHSYN----SSSVEGND-- 508
E+ S + + F L S E+ E L +Y E
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 509 CEKVVSIQCRE--CDGNQVSAVYPLIDSWPVADDTERVKLLERIH-ALFELLLRHKCLSA 565
+ I+ R+ + NQV A Y + R++ ++ AL EL
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNV----------SRLQPYLKLRQALLEL--------- 147
Query: 566 SHLSKVIQYTMDEL--QSLASGSLLLNHGVGQTPMCICF---LG-VHQLRKIVKFLQELS 619
V+ + +A + L++ V F L + +++ LQ+L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 620 H-----ACSLGRYSERI-NSIDDANSVSPSLEIKETIVLNGDASCLL-LDERLLSTELIS 672
+ S +S I I + E++ + +CLL L + + +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSKPYENCLLVLLN-VQNAKAW- 259
Query: 673 GDAFIDN-----VTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGM 727
+AF + +T+ + D L ++ H++ HS +
Sbjct: 260 -NAF-NLSCKILLTTRF-------KQVTDFL------SAATTTHISLDHHSMTLTPDEVK 304
Query: 728 EIL-QTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVL 786
+L + L+ Q L ++ A + +G + ++ V
Sbjct: 305 SLLLKYLDCRP---QDLPREVLTTNPRRLSIIAES---IRDGLAT---WDN----WKHVN 351
Query: 787 RKRREELLESENDMFISSRFESDAILNVLKEAE------ALNVNQFGYEDTYSGMTSQ-L 839
+ ++ES LNVL+ AE L+V F + + + L
Sbjct: 352 CDKLTTIIES--------------SLNVLEPAEYRKMFDRLSV--FP-PSAH--IPTILL 392
Query: 840 CDLESGEDDDWRNK---DCLHQVDTCIEVA-IQRQKEQLSVELSKIDARIMRNVTSMQQL 895
+ W + D + V+ + + +++Q ++ ++ + I + + + L
Sbjct: 393 SLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 896 ELKL----EPVSAYDYQSILLPLVQSYLRAHLED-LAEKDATEKSDAAREAFLAELALDS 950
+ +D ++ P + Y +H+ L + E+ R FL +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLE 504
Query: 951 KKVARGGS--DISKHTNDKTKEKRKHKEYRKTKDSKP----------VGGNERHIVHDKT 998
+K+ + + S + ++ + +K Y D K + E +++ K
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 999 ADLVSFPVESDGD 1011
DL+ + ++ +
Sbjct: 565 TDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1634 | ||||
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 2e-23 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 3e-23 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 3e-21 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 5e-17 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 4e-16 |
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (250), Expect = 2e-23
Identities = 58/345 (16%), Positives = 112/345 (32%), Gaps = 28/345 (8%)
Query: 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSI 1360
AGL+N +G CF+N I+Q L + R R+ +R +H G + E +
Sbjct: 4 AGLRN-LGN-TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61
Query: 1361 ASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSD 1420
T + + V+P+ + + P F DA E L + D LH +
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQRYAPR---FVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPK 118
Query: 1421 TESVESNCMGSWDCTNSA---------CIVHSLFGMDIFERMNCYSCGLESRHLKYTSFF 1471
+ + + + + LF + + C CG S + F+
Sbjct: 119 SNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCS--TVFDPFW 176
Query: 1472 HNINASALRTMKVMCAESSLDELLNLVEMNHQLACD-PGAGGCEKLNYIHHILSTPPHVF 1530
A R + + ++ G ++ I P +
Sbjct: 177 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILV 236
Query: 1531 TTVLGWQNTCESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYGQ----HYH 1586
+ + + +T + ++D+ ++L +V + G HY
Sbjct: 237 LHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYT 296
Query: 1587 CFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQVLFFE 1631
+ S W ++D +V + S S V + +LF+E
Sbjct: 297 AYCRSPGTGEWHTFNDSSVTPM-SSSQVRTS------DAYLLFYE 334
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1634 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.26 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.55 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.4 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 95.82 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 95.48 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.11 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 94.42 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 92.54 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 90.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 89.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 88.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 84.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 84.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 81.56 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 81.34 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=362.30 Aligned_cols=292 Identities=17% Similarity=0.222 Sum_probs=222.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 44576765789887655339999998239999999235999877569737999999999998614689998630718899
Q 000342 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1634)
Q Consensus 1297 ~v~~~GL~NlG~~NTCFLNSILQaL~~ip~FR~~lL~~~~~~~~~~~e~cv~~aL~~LF~~L~~ss~g~~~~~VsP~~Lr 1376 (1634)
.++.+||.|+| |||||||+||+|+++|+||++++..... ......++.++|+.+|..|+.. ..++.|..+.
T Consensus 3 ~~G~vGL~NlG--NTCy~NSvLQ~L~~~~~f~~~i~~~~~~--~~~~~~~~~~~l~~lf~~l~~~-----~~~~~~~~~~ 73 (347)
T d1nbfa_ 3 HTGYVGLKNQG--ATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHS-----DKPVGTKKLT 73 (347)
T ss_dssp SSSCCCBCCCS--SCHHHHHHHHHHHTSHHHHHHHHTSCCT--TCCTTTCHHHHHHHHHHHHHHC-----SSCBCCHHHH
T ss_pred CCCCCCCEECC--CCHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHCC-----CCCCCHHHHH
T ss_conf 99972986399--6569999999998479999999707766--8864126999999999998657-----9975719999
Q ss_pred HHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 99961289970000001265999999999999853099999998841112368988667887543023320589999605
Q 000342 1377 IALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCY 1456 (1634)
Q Consensus 1377 ~aL~ki~p~~~~F~~~~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~e~~~~~~w~~~~~~SiI~~LF~G~l~s~i~C~ 1456 (1634)
..+.. ..|..+.||||+||+..||+.|++++..... .++|.++|+|.+.+.+.|.
T Consensus 74 ~~~~~-----~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~--------------------~~~i~~lF~g~~~~~~~C~ 128 (347)
T d1nbfa_ 74 KSFGW-----ETLDSFMQHDVQELCRVLLDNVENKMKGTCV--------------------EGTIPKLFRGKMVSYIQCK 128 (347)
T ss_dssp HHTTC-----CGGGGGSCBCHHHHHHHHHHHHHHHHTTSTT--------------------TTHHHHHHCEEEEEEEEES
T ss_pred HHHCH-----HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------CCCCCCEECEEEEEEEEEC
T ss_conf 76230-----0020677877999999999988888750333--------------------4565501134789867807
Q ss_pred CCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC-C-CCCCCCCC-CEEEEEEECCCCEEEEE
Q ss_conf 889633333343200113500124555313558799999998313543358-9-99887742-10788850467708999
Q 000342 1457 SCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACD-P-GAGGCEKL-NYIHHILSTPPHVFTTV 1533 (1634)
Q Consensus 1457 ~C~~~S~~~~~~sf~~lI~as~l~~~k~~~~~~Sl~dlLk~~~~ee~~~Ce-~-~c~~Cgkk-~~k~~~IsrLP~VLiIh 1533 (1634)
.|+..+.+ ++.|..+ ... .....++.++|..++..+.+..+ . .|+.|+.. ..++..|.++|+||+||
T Consensus 129 ~C~~~s~~--~e~f~~l-~L~-------i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~ 198 (347)
T d1nbfa_ 129 EVDYRSDR--REDYYDI-QLS-------IKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQ 198 (347)
T ss_dssp SSCCEEEE--EEEESSE-EEE-------CTTCCBHHHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEE
T ss_pred CCCCEEEE--ECCCCCC-CCC-------CCCCCCHHHHHHHHCCHHEECCCCCCCCCCCCCEECCEEEEEEECCCHHEEE
T ss_conf 86614223--2232233-101-------1233310356776412022414310024567630121789998269800475
Q ss_pred EEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEEEEEC----CEEEEEEEECCCCCEEEECCCC
Q ss_conf 98616---88642111222110110012332223799--998489999998839----6499999847999699991981
Q 000342 1534 LGWQN---TCESFDDITATLAALSPEIDISILYRGLD--PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKT 1604 (1634)
Q Consensus 1534 Lkw~~---~~~s~~kI~~~i~~fp~eLDLs~f~~g~d--~~~~Y~L~AVV~H~G----GHYvayVr~~~~~kW~~fDD~~ 1604 (1634)
|+||. ......|+...+. ||..|||+.++.... ....|+|+|||+|.| |||+||+|+..+++|++|||+.
T Consensus 199 l~Rf~~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~ 277 (347)
T d1nbfa_ 199 LMRFMYDPQTDQNIKINDRFE-FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDV 277 (347)
T ss_dssp EECEEEETTTTEEEECCCCCB-CCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTE
T ss_pred EEEEEECCCCCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 100134223573101572476-4544134653233334576440567999845878799899806138999899998996
Q ss_pred EEEECCHHHHHHHCCCCC---------CCEEEEEEEECC
Q ss_conf 079289255631002799---------840999999529
Q 000342 1605 VKVVGSWSDVLSMCERGH---------LQPQVLFFEAVN 1634 (1634)
Q Consensus 1605 Vt~Vs~WedVLs~~~~~~---------~qpYILFYERvn 1634 (1634)
|+.|+. ++|+..+.++. .+||||||+|.+
T Consensus 278 V~~v~~-~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~ 315 (347)
T d1nbfa_ 278 VSRCTK-EEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 315 (347)
T ss_dssp EEECCH-HHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGG
T ss_pred EEECCH-HHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 089889-99987515887655455778977999999637
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|