Citrus Sinensis ID: 000344
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1630 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BL06 | 1588 | Inactive ubiquitin carbox | yes | no | 0.183 | 0.188 | 0.319 | 2e-35 | |
| Q70EL1 | 1684 | Inactive ubiquitin carbox | yes | no | 0.183 | 0.177 | 0.316 | 6e-35 | |
| Q6IE24 | 1588 | Inactive ubiquitin carbox | yes | no | 0.183 | 0.188 | 0.313 | 2e-34 | |
| Q70EK8 | 1073 | Inactive ubiquitin carbox | no | no | 0.181 | 0.275 | 0.304 | 3e-34 | |
| P15975 | 1069 | Inactive ubiquitin carbox | no | no | 0.184 | 0.281 | 0.303 | 1e-32 | |
| Q9FPS4 | 859 | Ubiquitin carboxyl-termin | no | no | 0.168 | 0.320 | 0.232 | 3e-06 |
| >sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2 | Back alignment and function desciption |
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Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 156/338 (46%), Gaps = 39/338 (11%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIA 1361
GL NE G+ +CFLN +Q LWHL FR F R + H +G+ C+ CAL IF +
Sbjct: 32 GLSNEPGQNSCFLNSALQVLWHLDIFRRSF--RQLTTHKCMGDSCIFCALKGIFNQFQCS 89
Query: 1362 STDTRKEAVAPT-SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSD 1420
S E V P+ +LR AL+ + D FQ M+DA+E + +H +++D
Sbjct: 90 S-----EKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH------FHIAD 138
Query: 1421 TESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALR 1480
E+ E C T CI H F M +FE+ C SCG S L + H I+ +AL
Sbjct: 139 -ETKEDIC------TAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQMVHYISTTALC 191
Query: 1481 TMKVMCAE-------SSLDELL-NLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTT 1532
+ E S ELL N M C C + I +L P + T
Sbjct: 192 NQAICMLEKREKPSPSMFGELLQNASTMGDLRNC---PSNCGERIRIRRVLMNAPQIITI 248
Query: 1533 VLGWQNTCESF-DDITATLAALSPEIDISILYRGLDPKRRHS---LVSVVCYYGQHYHCF 1588
L W + +D+ +L D+ +R D + + S LV ++CYYG+HY F
Sbjct: 249 GLVWDSEHSDLAEDVIHSLGTCLKLGDL--FFRVTDDRAKQSELYLVGMICYYGKHYSTF 306
Query: 1589 AYSHDQERWIMYDDKTVKVVGS-WSDVLSMCERGHLQP 1625
+ +W+ +DD VK +G W DV++ C +GH QP
Sbjct: 307 FFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQP 344
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Has no peptidase activity. Mus musculus (taxid: 10090) |
| >sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 | Back alignment and function description |
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| >sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1630 | ||||||
| 225456629 | 1653 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.977 | 0.690 | 0.0 | |
| 297734043 | 1552 | unnamed protein product [Vitis vinifera] | 0.932 | 0.979 | 0.692 | 0.0 | |
| 255540879 | 1617 | conserved hypothetical protein [Ricinus | 0.977 | 0.985 | 0.694 | 0.0 | |
| 449441049 | 1594 | PREDICTED: uncharacterized protein LOC10 | 0.957 | 0.979 | 0.609 | 0.0 | |
| 356565061 | 1611 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.983 | 0.605 | 0.0 | |
| 356513561 | 1581 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.978 | 0.615 | 0.0 | |
| 186510760 | 1568 | Ubiquitin carboxyl-terminal hydrolase-re | 0.934 | 0.971 | 0.614 | 0.0 | |
| 297819400 | 1571 | hypothetical protein ARALYDRAFT_485153 [ | 0.932 | 0.967 | 0.613 | 0.0 | |
| 186510762 | 1606 | Ubiquitin carboxyl-terminal hydrolase-re | 0.957 | 0.971 | 0.593 | 0.0 | |
| 186510764 | 1607 | Ubiquitin carboxyl-terminal hydrolase-re | 0.961 | 0.975 | 0.594 | 0.0 |
| >gi|225456629|ref|XP_002266656.1| PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 2254 bits (5842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1143/1656 (69%), Positives = 1334/1656 (80%), Gaps = 41/1656 (2%)
Query: 1 MGHKKKNTAPRSKQSPAAAVEAEP------CATPDATSNQTNTEPSEADVVVGG--GGAS 52
MGHKK+N APRSK S + A A + + N SE +V G S
Sbjct: 1 MGHKKRNLAPRSKGSQGSPGGAAVGGDGANSAEAEQSLNLNVGNSSEKSKMVTGVESEGS 60
Query: 53 TYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIID 112
Y AIKLECER+LTALRRGNH KALR+MKELS RH+NS + ALIHRVQGTVCVKVASIID
Sbjct: 61 AYSAIKLECERSLTALRRGNHNKALRIMKELSVRHDNSVHSALIHRVQGTVCVKVASIID 120
Query: 113 DLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172
D N+KQRHLKNAIE+AKKA ELSP+S+EFAHFYANLLYEAA++GKEYEEVV ECERAL+I
Sbjct: 121 DPNAKQRHLKNAIETAKKAVELSPNSIEFAHFYANLLYEAASEGKEYEEVVHECERALSI 180
Query: 173 ENPIDPAKESLQDESQQKILTADARIAHVQSELRSLIQKSNIASISTWMKNLGTGEEKFR 232
++P+DPAKESLQDESQQKI T +ARI HVQ+ELRSLIQKSNIASISTWMKNLG GEEKFR
Sbjct: 181 DSPVDPAKESLQDESQQKISTVEARIGHVQNELRSLIQKSNIASISTWMKNLGNGEEKFR 240
Query: 233 LIPIRRVAEDPMEVRLVQARRPNEIKKATKTPEERRKEIEVRVAAARLLQQKSETGQLYQ 292
LIPIRRV+EDPMEVRLVQ++RPNEIKKATKT EERRKEIEVRVAAARLLQQKS+ Q
Sbjct: 241 LIPIRRVSEDPMEVRLVQSKRPNEIKKATKTQEERRKEIEVRVAAARLLQQKSDAPQ--S 298
Query: 293 NNEGERN--VDSGSGGLEKRERERRKHGSNLRRNRSKEERRDFVRSYWNSMSLEMKRELL 350
+EG+R S G +R ERRK N R+ S ER+ VRSYWNSMS M+++LL
Sbjct: 299 QSEGDRTDKASETSSGPGQRVGERRK---NARKFGSTVERKVRVRSYWNSMSFNMRKDLL 355
Query: 351 KVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQ 410
K+++ D+KAH +S+KDGLAS VL+EAL+F E NK W+FWVCCRC EKF DSE HM HVVQ
Sbjct: 356 KIRISDLKAHFSSVKDGLASGVLSEALSFVEVNKVWKFWVCCRCGEKFKDSELHMQHVVQ 415
Query: 411 QHMGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFY 470
+HMGNLLPKMQ+VLPQ++DNEW EMI NCSWKPLDI AAVKML ++++K + E+ ++FY
Sbjct: 416 EHMGNLLPKMQSVLPQNIDNEWIEMIVNCSWKPLDISAAVKML-KNESKCQQNELIDEFY 474
Query: 471 SGNHIEECDDCFKDALDSSPEKENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYP 530
+GN+ EEC DCFKDA +SSPEK LG + ++ +D +K+ + RECDGN+ S Y
Sbjct: 475 TGNNTEECIDCFKDAWESSPEKGMLGDGCSCGNLVKSDSDKIPNQGSRECDGNEGSKAYL 534
Query: 531 LIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLASGSLLLN 590
L +SWP+ADD+ER KLLE+IH LFE+L++HKCL+ SHLSKV+Q+T DELQ +ASGS LLN
Sbjct: 535 LANSWPLADDSERAKLLEKIHVLFEMLIKHKCLAGSHLSKVMQFTTDELQGIASGSQLLN 594
Query: 591 HGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINS-IDDANSVSPSLEIKET 649
+GV QTP CICFLG QLRK++KFLQELSHAC L R S++ +S +DDANS++ +IKE
Sbjct: 595 YGVDQTPTCICFLGASQLRKLLKFLQELSHACGLARSSDKTSSAMDDANSLNRDFDIKEN 654
Query: 650 IVLNGDASCLLLDERLLSTELISGD---AFIDNV---TSANIRHENGVAEDADALLTWIF 703
++LNGDASCLLLDE LL TE S A D+ TS I +ENGV D +LL+WIF
Sbjct: 655 VLLNGDASCLLLDEHLLPTENTSTASHVAVTDDAATETSPIICNENGVQPDGGSLLSWIF 714
Query: 704 AGPSSGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDL 763
GPSS E L +WM +EEK++QGMEILQ LEKEFYHLQSLCERKCEHLSYEEALQA+EDL
Sbjct: 715 TGPSSVEQLASWMRIREEKSNQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQAVEDL 774
Query: 764 CLEEGKKRETVAEFGHRSYESVLRKRREELLESEND-MFISSRFESDAILNVLKEAEALN 822
CLEEGKKRE V +FG RS ESVLRKRREEL ESEN+ M IS+RFE DA++NVLKEAE+LN
Sbjct: 775 CLEEGKKRENVTDFGSRSLESVLRKRREELRESENEVMLISNRFELDAVINVLKEAESLN 834
Query: 823 VNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAIQRQKEQLSVELSKID 882
+NQFGYE+ Y+G+TS LCDLESGEDDDWR+KD LHQ+D CIEVAIQRQKEQLSVELSKID
Sbjct: 835 MNQFGYEEHYNGVTSHLCDLESGEDDDWRSKDFLHQMDACIEVAIQRQKEQLSVELSKID 894
Query: 883 ARIMRNVTSMQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAF 942
ARIMRNVT MQQLEL LEPVSA+DY+SI+LPL++S++RAHLEDLAEKDAT+KSDAAREAF
Sbjct: 895 ARIMRNVTGMQQLELTLEPVSAFDYRSIILPLLKSFMRAHLEDLAEKDATQKSDAAREAF 954
Query: 943 LAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSKPVGGNERHIVHDKTADLV 1002
LAELALDSKK A GGSD S+H +DKTKEK+K KEYRK KDSK GG+E+H++H T +
Sbjct: 955 LAELALDSKKSAIGGSDNSRHNHDKTKEKKKGKEYRKMKDSKGTGGSEQHVLHHVTTEQD 1014
Query: 1003 SFPVESDGDNPDSETVVSANGDDLKLQEEEFRRKIELEAEERKLEETLAYQRRIENEAKL 1062
S PV SDG++PDSE VVS N D+ K QEEE RRKIELEAEERKLEETL YQRRIENEAK
Sbjct: 1015 SSPVASDGEHPDSEPVVSVNDDNSKHQEEELRRKIELEAEERKLEETLEYQRRIENEAKQ 1074
Query: 1063 KHLAEQSKKSAQIFGENVAEGVCDTYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFEG 1122
KHLAEQ KK+ I E V G YL +++ D H+ + K +FP++F+G
Sbjct: 1075 KHLAEQRKKTTGIIPEKVVTGFSGGYLNPSADEHDAHEQLE-----HFKQKSQFPNSFDG 1129
Query: 1123 TPVNTANGAAVPIRSSPTSSFQNINTA---HHLSIKQGLPNGETPEDGFLPTDRRTGRRG 1179
P + +G V I S +S+ Q + + +H ++QGLPNG +P DG L ++RR GR+
Sbjct: 1130 MPRDVMDGTTVLIDSITSSANQRLRSTPSQYHAKVEQGLPNGGSPVDGVLLSERRIGRKT 1189
Query: 1180 RRHRSSNRSQDWKNQALSSEKENIGVR--------SDDSHLTGAAAP-YLGDGGTKTLRQ 1230
+R ++S + D K QA+SS KEN+ V + + G+ +LGD GTKTLRQ
Sbjct: 1190 KRQKNSTKLIDGKYQAVSSGKENVEVGISHIEDRVKEQIKIHGSGVNLHLGDNGTKTLRQ 1249
Query: 1231 LHAEEDDEERFQADLKQAVRQSLDTFQAHQKMPLVSSLRMTQNVSLEANKVAVLSNEVRS 1290
L AEEDDEERFQADLKQAVRQSLD +QAHQK+PLVSSLRM Q +S E + V + ++V
Sbjct: 1250 LQAEEDDEERFQADLKQAVRQSLDAYQAHQKLPLVSSLRMPQRMSHEVDDVGLSPDDVVI 1309
Query: 1291 ENVNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCA 1350
+N++G D+ G GLKNEVGEYNCFLNVIIQSLWHLRRFR EF RS SEH+HVG+PCVVCA
Sbjct: 1310 KNMSGADMLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRNEFLGRSTSEHVHVGDPCVVCA 1369
Query: 1351 LYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHR 1410
LYEIFTALS+ASTDTR+EAVAP++LRIALSNLYPDSNFFQEAQMNDASEVL VIFDCLHR
Sbjct: 1370 LYEIFTALSVASTDTRREAVAPSALRIALSNLYPDSNFFQEAQMNDASEVLGVIFDCLHR 1429
Query: 1411 SFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSF 1470
SFT S++SDTESVESNCMGSWDC NS C+ HSLFGMDIFERMNCY+C LESRHLKYTSF
Sbjct: 1430 SFTSSSSISDTESVESNCMGSWDCANSICLAHSLFGMDIFERMNCYNCSLESRHLKYTSF 1489
Query: 1471 FHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVF 1530
FHNINASALRTMKVMCAESS DELLNLVEMNHQLACDP AGGC K NYIHHILSTPPHVF
Sbjct: 1490 FHNINASALRTMKVMCAESSFDELLNLVEMNHQLACDPEAGGCGKFNYIHHILSTPPHVF 1549
Query: 1531 TTVLGWQNTCESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYGQHYHCFAY 1590
T VLGWQNTCES DDITATLAAL+ EID+S+LYRGLDPK R+ LVSVVCYYGQHYHCFAY
Sbjct: 1550 TIVLGWQNTCESADDITATLAALNTEIDVSVLYRGLDPKNRYCLVSVVCYYGQHYHCFAY 1609
Query: 1591 SHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQ 1626
SH+ ERW+MYDDKTVKV+GSW +VL+MCERGHLQPQ
Sbjct: 1610 SHEHERWVMYDDKTVKVIGSWDNVLTMCERGHLQPQ 1645
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734043|emb|CBI15290.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255540879|ref|XP_002511504.1| conserved hypothetical protein [Ricinus communis] gi|223550619|gb|EEF52106.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449441049|ref|XP_004138296.1| PREDICTED: uncharacterized protein LOC101212702 [Cucumis sativus] gi|449477596|ref|XP_004155067.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229576 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356565061|ref|XP_003550763.1| PREDICTED: uncharacterized protein LOC100800030 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356513561|ref|XP_003525481.1| PREDICTED: uncharacterized protein LOC100799759 [Glycine max] | Back alignment and taxonomy information |
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| >gi|186510760|ref|NP_190372.3| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi|332644822|gb|AEE78343.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297819400|ref|XP_002877583.1| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata] gi|297323421|gb|EFH53842.1| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|186510762|ref|NP_190374.4| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi|332644823|gb|AEE78344.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|186510764|ref|NP_001118788.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi|332644824|gb|AEE78345.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1630 | ||||||
| TAIR|locus:2097835 | 1607 | AT3G47910 [Arabidopsis thalian | 0.678 | 0.688 | 0.555 | 0.0 | |
| TAIR|locus:2097935 | 1568 | AT3G47890 [Arabidopsis thalian | 0.668 | 0.694 | 0.567 | 0.0 | |
| TAIR|locus:2200360 | 1147 | AT1G65120 [Arabidopsis thalian | 0.117 | 0.166 | 0.325 | 2.1e-63 | |
| TAIR|locus:2042072 | 1122 | AT2G27630 [Arabidopsis thalian | 0.142 | 0.207 | 0.334 | 9.6e-54 | |
| TAIR|locus:2042016 | 1106 | AT2G27650 [Arabidopsis thalian | 0.116 | 0.171 | 0.334 | 2.5e-51 | |
| TAIR|locus:2200350 | 1101 | AT1G65200 [Arabidopsis thalian | 0.125 | 0.186 | 0.308 | 3e-48 | |
| TAIR|locus:2200355 | 1094 | AT1G65110 [Arabidopsis thalian | 0.150 | 0.224 | 0.284 | 3e-41 | |
| TAIR|locus:2035104 | 1136 | AT1G52450 [Arabidopsis thalian | 0.109 | 0.156 | 0.338 | 3.3e-40 | |
| TAIR|locus:2153157 | 1149 | AT5G51530 [Arabidopsis thalian | 0.117 | 0.167 | 0.311 | 4.1e-40 | |
| TAIR|locus:2156161 | 1132 | AT5G61950 [Arabidopsis thalian | 0.154 | 0.222 | 0.298 | 2.5e-38 |
| TAIR|locus:2097835 AT3G47910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3038 (1074.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 636/1145 (55%), Positives = 781/1145 (68%)
Query: 498 SYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELL 557
++N ++ +G+ C + E ++S +P D WP++DD ER KLLE+I A FE L
Sbjct: 479 AWNDTTPDGDTCNGWNENESEE--EVKLSIAFPPPDGWPISDDPERAKLLEKIRAAFEQL 536
Query: 558 LRHKCLSASHLSKVIQYTMDELQSLASGSLLLNHGVGQTPMCICFLGVHQLRKIVKFLQE 617
+RHK L+ASH KVIQ+T+DELQ+L S S LN G+ ++P+CICFLG L KI+KFLQ+
Sbjct: 537 IRHKYLAASHHDKVIQFTLDELQNLPSVSQFLNRGLNKSPLCICFLGASHLSKILKFLQD 596
Query: 618 LSHACSLGRYSERINSIDDANSVSPSLEIKETIVLNGDASCXXXXXXXXXXXXIS----G 673
LS AC L RYSE+ N D+ N E+ E I+L+ + SC I G
Sbjct: 597 LSQACGLSRYSEQSNPHDEINFGDLGREVTEEILLDSEDSCLLMDEKLLGTECIQEKYMG 656
Query: 674 DAFIDNVT---SANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEIL 730
AF +NVT S +I + N V+ AD L+WIF GPSS E + +WM +KE+KT+QG+EI+
Sbjct: 657 SAF-NNVTIASSGDIANGNDVSSGADGFLSWIFTGPSSEEQVVSWMRTKEDKTNQGLEIM 715
Query: 731 QTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVXXXXX 790
Q LEKEFYHLQ+LCERKCEHLSYE ALQ +EDLCLEEG+KRET AEF H SYE+V
Sbjct: 716 QHLEKEFYHLQNLCERKCEHLSYEGALQTVEDLCLEEGRKRETSAEFTHESYETVLRKRR 775
Query: 791 XXXXXSENDM-FISSRFESDAILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDD 849
S++++ FISSRFE DAI NVLK+AE LN NQFGYE++Y +SQL DLESGE D+
Sbjct: 776 EELNESDHELLFISSRFELDAITNVLKDAETLNHNQFGYEESYGCTSSQLRDLESGEADE 835
Query: 850 WRNKDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSAYDYQS 909
W KD LH+ D+ IE+AIQ+QKEQLS ELS+IDA++MRNVT MQQLELKL PVS+ DYQ
Sbjct: 836 WGIKDSLHEADSFIEIAIQKQKEQLSAELSRIDAQMMRNVTGMQQLELKLGPVSSNDYQI 895
Query: 910 ILLPLVQSYLRAHLEDLAEKDATEKSDXXXXXXXXXXXXDSKKVARGGSDISKHTNDKTK 969
+LLPLV+SY+RAHLE LAEKDATEKSD DSKK ARG +D SK+T +K+K
Sbjct: 896 VLLPLVKSYMRAHLEALAEKDATEKSDAAREALLVELALDSKKEARGRNDNSKNTLEKSK 955
Query: 970 EKRKHKEYRKTKDSKPVGGNERHIVHDKTADLVS---FPVESDGDNPDSETVVSANGDDL 1026
+K+K K+ RK KD K G++ H AD V PV GD+ +++ +VS + L
Sbjct: 956 DKKKIKDTRKVKDMKATIGSD----HRSNADSVEHSPLPVAPVGDHSEAD-IVSEAVEAL 1010
Query: 1027 KLQEEEFXXXXXXXXXXXXXXXXXXYQRRIENEAKLKHLAEQSKKSAQIFGENVAEGVCD 1086
K +EEE+ YQRRIE+EAK KH+AEQ KK + NVA+ V
Sbjct: 1011 KEEEEEYKRQIELEEEERKLEKTLEYQRRIEDEAKEKHMAEQQKKYSSSVPMNVAKTV-- 1068
Query: 1087 TYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTPVNTANGAAVPIRSSPTSSFQNI 1146
Y G N++D + ++ + EG VNT NG P S+ S+ +
Sbjct: 1069 -YNGCTDNEVDYLVLQGQEKSINQEKRNGRLDDLEGASVNT-NGV-FP--STNHSAISDT 1123
Query: 1147 NTAHHLSIKQGLPNGETPEDGFLPTDXXXXXXXXXXXXXXXXQDWKNQALSSEKENIGVR 1206
++ ++ +PNG + G +D D K E EN +
Sbjct: 1124 AKVQNVKSQKVVPNGTAMQAGIFQSDQRTGRRTRRQKASNKLADGKYPVTPPETENS--K 1181
Query: 1207 SDDSHLTGAA-APYL---GDGGTKTLRQLHAEEDDEERFQADLKQAVRQSLDTFQAHQKM 1262
S S G + L GD GTKTLRQL AE+DDEERFQAD+++AV QSLD +Q + M
Sbjct: 1182 SQLSGTNGERHSETLRNNGDVGTKTLRQLQAEDDDEERFQADMQRAVLQSLDVYQGGRNM 1241
Query: 1263 PLVSSLRMTQNVSLEANKVAVLSNE-VRSENVNGIDVYGAGLKNEVGEYNCFLNVIIQSL 1321
S LR LE N LS++ + S + G+ ++G GL+NEVGEYNCFLNVIIQSL
Sbjct: 1242 --ASCLR----TPLEVNNDGGLSDDTMESRSSTGVTIFGTGLQNEVGEYNCFLNVIIQSL 1295
Query: 1322 WHLXXXXXXXXXXXPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381
W+L EH HVG+PCVVC+LYEIFTALS AS++ + E VAP+SLRIALSN
Sbjct: 1296 WNLELFRAEFLRSSTREHHHVGDPCVVCSLYEIFTALSAASSEKQNEPVAPSSLRIALSN 1355
Query: 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIV 1441
LYPDS+FFQEAQMNDASEVLAVIFDCLHRSF S+VSD +S +SNC GSWDC N CI
Sbjct: 1356 LYPDSSFFQEAQMNDASEVLAVIFDCLHRSFAQSSSVSDVDSSDSNCTGSWDCANRTCIA 1415
Query: 1442 HSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMN 1501
HSLFGMDIFE++NCYSCGLESRHLKYTSFFHNINASALRTMKV CAE+S DELLNLVEMN
Sbjct: 1416 HSLFGMDIFEQLNCYSCGLESRHLKYTSFFHNINASALRTMKVTCAENSFDELLNLVEMN 1475
Query: 1502 HQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISI 1561
HQLACDP GGC KLN+IHHIL+TPPHVFTTVLGWQNTCE+ +DI ATLAAL+ EIDISI
Sbjct: 1476 HQLACDPETGGCGKLNHIHHILTTPPHVFTTVLGWQNTCETVEDIAATLAALNTEIDISI 1535
Query: 1562 LYRGLDPKRRHSLVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERG 1621
+YRGLDPK +SLVSVVCYYGQHYHCFA+S + ++WIMYDDKTVKV+GSW DVLSMCERG
Sbjct: 1536 MYRGLDPKSTYSLVSVVCYYGQHYHCFAHSREHDQWIMYDDKTVKVIGSWIDVLSMCERG 1595
Query: 1622 HLQPQ 1626
HLQPQ
Sbjct: 1596 HLQPQ 1600
|
|
| TAIR|locus:2097935 AT3G47890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200360 AT1G65120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042072 AT2G27630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042016 AT2G27650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200350 AT1G65200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200355 AT1G65110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2035104 AT1G52450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2153157 AT5G51530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2156161 AT5G61950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.4.19.12 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1630 | |||
| pfam04780 | 463 | pfam04780, DUF629, Protein of unknown function (DU | 1e-73 | |
| pfam04780 | 463 | pfam04780, DUF629, Protein of unknown function (DU | 3e-37 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-25 | |
| pfam04781 | 112 | pfam04781, DUF627, Protein of unknown function (DU | 1e-17 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 2e-15 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 3e-06 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 4e-06 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 0.002 |
| >gnl|CDD|203088 pfam04780, DUF629, Protein of unknown function (DUF629) | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 1e-73
Identities = 96/340 (28%), Positives = 162/340 (47%), Gaps = 21/340 (6%)
Query: 533 DSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLA-SGSLLLNH 591
WP+ADD ER KLL+ I L L K LS S V+Q+T+ L L S L +
Sbjct: 140 KDWPLADDEERSKLLKEIKLLLVSLCDLKILSCSLRDWVMQFTVKHLAKLEVSKQYLDDC 199
Query: 592 GVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDA-NSVSPSLEIKETI 650
+ +TP ICFL +L +I+KFL++L + + + A +S + +KE I
Sbjct: 200 SLVETPQSICFLECDELNQILKFLKQLK-----CERDDGTSLVCKAVDSFLDNSRVKEKI 254
Query: 651 VLNGDASCLLLDERLLSTELISGDAFIDNVT---SANIRHENGVAEDADALLTWIFAGPS 707
L+ S LLLD+RLL +E D D T H V D +L+W+F PS
Sbjct: 255 DLDPQFSFLLLDKRLLKSEEAPFD---DEGTINVFDPNAHYAKVHPQGDDILSWLFDYPS 311
Query: 708 SGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEE 767
+ + + +E + +L+ ++ L++ +K + L Y+ AL EDLC+ E
Sbjct: 312 VDKEFPSPI--REHNLDIWLAVLRAVQFTCRTLETKYAKKVQMLDYDAALTEAEDLCISE 369
Query: 768 GKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAILNVLKEAEALNVNQFG 827
++R + E SY S+LR + EEL+ ++D ++++ A+ +VL+ A +
Sbjct: 370 DERRNNLLEDQWSSYASLLRDKCEELVGRDDDNSLTTKLFLCAVRDVLEGASHPTFDFLD 429
Query: 828 YEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAI 867
E+ + + +L+S DD +H + + + +
Sbjct: 430 DEE----CMNLIRELKSLSDDIV--LKSIHLLKSVVTEKV 463
|
This family represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family. Length = 463 |
| >gnl|CDD|203088 pfam04780, DUF629, Protein of unknown function (DUF629) | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|147106 pfam04781, DUF627, Protein of unknown function (DUF627) | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1630 | |||
| PF04780 | 466 | DUF629: Protein of unknown function (DUF629); Inte | 100.0 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.97 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 99.97 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 99.97 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 99.96 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 99.96 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 99.96 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.96 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 99.94 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 99.93 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.92 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 99.92 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.92 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.92 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.9 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 99.87 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.86 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.83 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.82 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.8 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.77 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.42 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 98.27 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.63 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 96.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 95.39 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 94.76 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 94.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 94.66 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 94.35 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 94.33 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 94.32 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 94.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 94.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 93.84 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 93.68 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 93.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 92.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 92.71 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 92.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 92.51 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 92.4 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 92.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 91.75 | |
| PF08715 | 320 | Viral_protease: Papain like viral protease; InterP | 91.5 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 91.42 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 91.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 91.05 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 90.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 90.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 89.92 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 89.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 88.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 88.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 88.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 88.14 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 87.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 87.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 87.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 87.51 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 87.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 86.76 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 86.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 86.21 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 85.99 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 85.72 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 85.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 85.06 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 85.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 84.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 84.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 83.84 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 82.97 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 82.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 81.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 81.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 81.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 81.68 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 81.56 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 81.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 81.35 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 80.47 |
| >PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-128 Score=1147.40 Aligned_cols=463 Identities=47% Similarity=0.749 Sum_probs=441.2
Q ss_pred HHHHHhccCCHHHHcceeeEehhhHHhhhhhcccchhHHHHHHHHHHHHhcCccceEeccccccccCChHHHHHhhhhhh
Q 000344 333 FVRSYWNSMSLEMKRELLKVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1630)
Q Consensus 333 ~v~~yW~~m~~e~kr~fL~V~i~~L~s~~~~~~~~~~~~~ls~al~fak~n~sW~fWiCp~C~~kF~d~~s~~~Hl~~~H 412 (1630)
+||+||++|++|+||+||+|+|++|++||.+++++.++++|++||+|||+|++|+|||||+|+++|+|+++|++||+++|
T Consensus 2 ~vr~yW~sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 2 RVRSYWNSMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred chhHhhccCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHHhh
Confidence 68999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcCCCCCChHHhhhhccCCCccccHHHHHHHhhcccccccccccccccccCCCcccccccccccCCCcchh
Q 000344 413 MGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDCFKDALDSSPEK 492 (1630)
Q Consensus 413 ~~~~~p~l~~~~p~~i~~~w~e~i~~~~W~Pvd~~aa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~c~kd~~~~~~~~ 492 (1630)
+++++|++++++||+|+++|++||.+|+|+|||++||++||+||++++++ |.+ |
T Consensus 82 ~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~------~~~-----------~--------- 135 (466)
T PF04780_consen 82 PAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS------FVY-----------K--------- 135 (466)
T ss_pred hhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch------hhh-----------h---------
Confidence 99999999999999999999999999999999999999999999999985 222 3
Q ss_pred ccccCCCCCCccCCCcccccccccccccCCCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Q 000344 493 ENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVI 572 (1630)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wpl~~d~er~~lL~~i~~~~~~~~~~k~Ls~s~~~~v~ 572 (1630)
++|+.+ |||++|+||+||||+||.+|++||+||||||||++|||
T Consensus 136 -------------------------~gw~~~-----------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~vi 179 (466)
T PF04780_consen 136 -------------------------NGWSKD-----------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWVI 179 (466)
T ss_pred -------------------------cCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 334455 99999999999999999999999999999999999999
Q ss_pred HhcHHHHhhcccccc-ccccCCCCCCccccccChhhHHHHHHHHHHHhhhccCccccCcccccccccccCCCcccceeee
Q 000344 573 QYTMDELQSLASGSL-LLNHGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIV 651 (1630)
Q Consensus 573 ~~t~~~l~~~~s~~~-l~~~~l~~tp~~icfL~~~~L~~il~fL~~l~~~~~l~r~~~~~~~~~~~~s~~~~~~ike~i~ 651 (1630)
+||++|||+|+++++ |.||+|+|||||||||+|++|++||+||++|+ | +|+++++.+++++++|+++++|||+|+
T Consensus 180 ~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~L~~Il~fL~~l~--~--~~~~~~~~v~~~~~~~~~~~~vkekI~ 255 (466)
T PF04780_consen 180 QFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQLNKILKFLQELK--C--RRDDGTSLVCRDVDSFWEGSRVKEKID 255 (466)
T ss_pred HhhHHHHhccCcchhhhhhccCCCCCceeEecCcHHHHHHHHHHHHHh--h--ccccCcccccccccccccccccceeee
Confidence 999999999986555 45999999999999999999999999999999 8 477788899999999999999999999
Q ss_pred ccCCcchhhhhhhhhccccccCCccccccccccccCCCCCccCccceecccccCCCCCcccccccchhHhhhhhhhHHHH
Q 000344 652 LNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQ 731 (1630)
Q Consensus 652 ~~~~~s~LllD~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~sWl~~~~s~~e~~~sw~~~~e~~~~~~~~vl~ 731 (1630)
||+||||||||+|||+|++.+++++|+|.++.+++||++++++||+||||||+||||++||.+|+++|++|++|||||||
T Consensus 256 ld~~~S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~ 335 (466)
T PF04780_consen 256 LDSDFSCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLR 335 (466)
T ss_pred cCCccceeeechhhhccCCCccCcCCceeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999996666999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHhhhhccccchHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHhhccCccccccccchhhh
Q 000344 732 TLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAI 811 (1630)
Q Consensus 732 ~~~~~~~~l~~~~~kk~~~l~~e~~l~~ve~~c~~E~~rr~~~~~~~~~~y~s~l~~~~eel~~~~~~~~~~~~~~~~~i 811 (1630)
+||++|++|+++|+|||++|+||+|||+|||||++|++||++++||||++|||+||+|||||+++++|+++++++|+|||
T Consensus 336 ~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~v 415 (466)
T PF04780_consen 336 AVEKEFRTLQSKYEKKCEHLSYEEALQAVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDAV 415 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCccccccCCccccccccCCCCCCccccccccccchHHHHH
Q 000344 812 LNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVA 866 (1630)
Q Consensus 812 ~~vl~~~~~~~~~~f~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~~~~~ 866 (1630)
+|||++|++ |+|+|.+..+| +++|||+++|++|| ++++++|+.|+||+.+
T Consensus 416 ~~Vl~~a~~---~~f~~~~~~~~-~~~i~~~~s~~~dd-~~~~~~~~l~s~v~~~ 465 (466)
T PF04780_consen 416 RDVLKEAST---PTFNFFGYEDC-TSLIRDLKSGESDD-RVKKSIHLLDSVVQFK 465 (466)
T ss_pred HHHHhhccc---CCCCCcccHHH-HHHHhcccccccch-HHHHHHHHHHHHHhhc
Confidence 999999999 77777777666 56699999999999 9999999999998743
|
A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family. |
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
| >PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 95.7 bits (237), Expect = 8e-20
Identities = 105/673 (15%), Positives = 220/673 (32%), Gaps = 162/673 (24%)
Query: 404 HMHHVVQQHMGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKS--R 461
H HH + G + + +L D +DN K D+ +D KS
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDA----FVDNFDCK--DV--------QDMPKSILS 47
Query: 462 DTEVSEDFYSGNHIEECDDCFKDALDSSPEK-------ENLGHSYN----SSSVEGND-- 508
E+ S + + F L S E+ E L +Y E
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 509 CEKVVSIQCRE--CDGNQVSAVYPLIDSWPVADDTERVKLLERIH-ALFELLLRHKCLSA 565
+ I+ R+ + NQV A Y + R++ ++ AL EL
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNV----------SRLQPYLKLRQALLEL--------- 147
Query: 566 SHLSKVIQYTMDEL--QSLASGSLLLNHGVGQTPMCICF---LG-VHQLRKIVKFLQELS 619
V+ + +A + L++ V F L + +++ LQ+L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 620 H-----ACSLGRYSERI-NSIDDANSVSPSLEIKETIVLNGDASCLL-LDERLLSTELIS 672
+ S +S I I + E++ + +CLL L + + +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSKPYENCLLVLLN-VQNAKAW- 259
Query: 673 GDAFIDN-----VTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGM 727
+AF + +T+ + D L ++ H++ HS +
Sbjct: 260 -NAF-NLSCKILLTTRF-------KQVTDFL------SAATTTHISLDHHSMTLTPDEVK 304
Query: 728 EIL-QTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVL 786
+L + L+ Q L ++ A + +G + ++ V
Sbjct: 305 SLLLKYLDCRP---QDLPREVLTTNPRRLSIIAES---IRDGLAT---WDN----WKHVN 351
Query: 787 RKRREELLESENDMFISSRFESDAILNVLKEAE------ALNVNQFGYEDTYSGMTSQ-L 839
+ ++ES LNVL+ AE L+V F + + + L
Sbjct: 352 CDKLTTIIES--------------SLNVLEPAEYRKMFDRLSV--FP-PSAH--IPTILL 392
Query: 840 CDLESGEDDDWRNK---DCLHQVDTCIEVA-IQRQKEQLSVELSKIDARIMRNVTSMQQL 895
+ W + D + V+ + + +++Q ++ ++ + I + + + L
Sbjct: 393 SLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 896 ELKL----EPVSAYDYQSILLPLVQSYLRAHLED-LAEKDATEKSDAAREAFLAELALDS 950
+ +D ++ P + Y +H+ L + E+ R FL +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLE 504
Query: 951 KKVARGGS--DISKHTNDKTKEKRKHKEYRKTKDSKP----------VGGNERHIVHDKT 998
+K+ + + S + ++ + +K Y D K + E +++ K
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 999 ADLVSFPVESDGD 1011
DL+ + ++ +
Sbjct: 565 TDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1630 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 9e-23 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-22 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 1e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 4e-16 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 7e-16 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.8 bits (247), Expect = 9e-23
Identities = 60/333 (18%), Positives = 113/333 (33%), Gaps = 30/333 (9%)
Query: 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEP-----CVVCALYEIFT 1356
GL+N +G C++N I+Q L + + F+R + I+ V I
Sbjct: 17 GLRN-LGN-TCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMK 74
Query: 1357 ALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGS 1416
AL + ++P +I + + + D+ E+L + D LH
Sbjct: 75 ALW----TGQYRYISPKDFKITIGKINDQFAGY---SQQDSQELLLFLMDGLHEDLNKAD 127
Query: 1417 NVSDTESVESNCMGSWDCTNSA---------CIVHSLFGMDIFERMNCYSCGLESRHLKY 1467
N + ++ + + A I+ +LF + C +C +SR +
Sbjct: 128 NRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEA 187
Query: 1468 TSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPP 1527
+ AS + C E + N++ C + L I P
Sbjct: 188 FMYLSLPLASTSKCTLQDCLRLFSKE--EKLTDNNRFYCSHCRARRDSLKKIEIWKLPPV 245
Query: 1528 HVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYGQ---- 1583
+ + T+ L + + ++++L SV +YG
Sbjct: 246 LLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGG 305
Query: 1584 HYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLS 1616
HY + + ++RW +DD V + S S V S
Sbjct: 306 HYTAYCKNAARQRWFKFDDHEVSDI-SVSSVKS 337
|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
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| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
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| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1630 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.11 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.59 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 96.22 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 95.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 95.17 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.84 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 93.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 93.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 90.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 90.63 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 89.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 86.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 85.29 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 83.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 83.77 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 81.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 80.11 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=334.05 Aligned_cols=279 Identities=17% Similarity=0.220 Sum_probs=213.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 34566547898865442299999971299999981449998765697469999999999975036899986427188999
Q 000344 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1630)
Q Consensus 1298 ~~~~GL~NlGn~NTCFLNSILQaL~~ip~Lr~~lL~~~~~~~~~~~~~cv~~aL~~Lf~~L~~ss~~~~~~~vsP~~Lr~ 1377 (1630)
.+.+||.|+|| ||||||+||+|+++++|+++++..... ......++.++|+.+|..|+.+. .++.|..+..
T Consensus 4 ~G~vGL~NlGN--TCy~NSvLQ~L~~~~~f~~~i~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~-----~~~~~~~~~~ 74 (347)
T d1nbfa_ 4 TGYVGLKNQGA--TCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSD-----KPVGTKKLTK 74 (347)
T ss_dssp SSCCCBCCCSS--CHHHHHHHHHHHTSHHHHHHHHTSCCT--TCCTTTCHHHHHHHHHHHHHHCS-----SCBCCHHHHH
T ss_pred CCCCCCEECCC--CHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHCCC-----CCCCHHHHHH
T ss_conf 99729863996--569999999998479999999707766--88641269999999999986579-----9757199997
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 99612899700000012549999999999998641999999987311123689886678764332343027899997147
Q 000344 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1630)
Q Consensus 1378 aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~LHeel~~~~~~s~~~s~e~~~~~sw~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1630)
.+.. ..|..+.||||+||+.+||+.|++++.... ..++|.++|+|.+.+.+.|..
T Consensus 75 ~~~~-----~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~--------------------~~~~i~~lF~g~~~~~~~C~~ 129 (347)
T d1nbfa_ 75 SFGW-----ETLDSFMQHDVQELCRVLLDNVENKMKGTC--------------------VEGTIPKLFRGKMVSYIQCKE 129 (347)
T ss_dssp HTTC-----CGGGGGSCBCHHHHHHHHHHHHHHHHTTST--------------------TTTHHHHHHCEEEEEEEEESS
T ss_pred HHCH-----HHCCHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------CCCCCCCEECEEEEEEEEECC
T ss_conf 6230-----002067787799999999998888875033--------------------345655011347898678078
Q ss_pred CCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC--CCCCCCCCC-CEEEEEEECCCCEEEEE
Q ss_conf 8853433434421351-2501223455312468888999998403443468--999876753-20788861589728999
Q 000344 1458 CGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQLACD--PGAGGCEKL-NYIHHILSTPPHVFTTV 1533 (1630)
Q Consensus 1458 Cg~~S~~~~~~sf~~l-I~as~l~~~~~~~~~~sledlLk~~~~~e~~~Cd--~~c~~C~k~-~~kk~~IsrlP~VLiIh 1533 (1630)
|+..+.+ ++.|..+ +.. ....++.++|..++..+.+..+ ..|+.|+.. ..++..|.++|++|+||
T Consensus 130 C~~~s~~--~e~f~~l~L~i---------~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~ 198 (347)
T d1nbfa_ 130 VDYRSDR--REDYYDIQLSI---------KGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQ 198 (347)
T ss_dssp SCCEEEE--EEEESSEEEEC---------TTCCBHHHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEE
T ss_pred CCCEEEE--ECCCCCCCCCC---------CCCCCHHHHHHHHCCHHEECCCCCCCCCCCCCEECCEEEEEEECCCHHEEE
T ss_conf 6614223--22322331011---------233310356776412022414310024567630121789998269800475
Q ss_pred EEECC---CCCCCCCCCCCCCCCCCEECCCCCCCCCC--CCCCEEEEEEEEEEC----CEEEEEEEECCCCCEEEEECCC
Q ss_conf 98507---88632011222222431010433412579--998559999999949----7099999847999689982994
Q 000344 1534 LGWQN---TCESFDDITATLAALSPEIDISILYRGLD--PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKT 1604 (1630)
Q Consensus 1534 L~r~~---~~~s~~kI~~~i~~fp~~LDLs~f~~g~~--~~~~Y~L~AVV~H~G----GHYvayvR~~~~~~W~~fDD~~ 1604 (1630)
|+|+. ......|+...+. ||..|||+.|+.... ....|+|+|||+|.| |||+||+|+..+++||+|||+.
T Consensus 199 l~Rf~~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~ 277 (347)
T d1nbfa_ 199 LMRFMYDPQTDQNIKINDRFE-FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDV 277 (347)
T ss_dssp EECEEEETTTTEEEECCCCCB-CCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTE
T ss_pred EEEEEECCCCCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 100134223573101572476-4544134653233334576440567999845878799899806138999899998996
Q ss_pred CEEECCHHHHHHHHHCCCC
Q ss_conf 2270897889998621997
Q 000344 1605 VKVVGSWSDVLSMCERGHL 1623 (1630)
Q Consensus 1605 Vt~V~swe~Vl~~c~~~~~ 1623 (1630)
|+.| +|++|+..+-.+.-
T Consensus 278 V~~v-~~~ev~~~~~g~~~ 295 (347)
T d1nbfa_ 278 VSRC-TKEEAIEHNYGGHD 295 (347)
T ss_dssp EEEC-CHHHHTGGGSCCCC
T ss_pred EEEC-CHHHHHHHHCCCCC
T ss_conf 0898-89999875158876
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| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
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| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
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| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
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| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
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