Citrus Sinensis ID: 000351
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1623 | 2.2.26 [Sep-21-2011] | |||||||
| Q42093 | 1623 | ABC transporter C family | yes | no | 0.996 | 0.996 | 0.787 | 0.0 | |
| Q9C8G9 | 1622 | ABC transporter C family | no | no | 0.996 | 0.996 | 0.769 | 0.0 | |
| Q9C8H0 | 1495 | ABC transporter C family | no | no | 0.914 | 0.992 | 0.719 | 0.0 | |
| Q9C8H1 | 1495 | ABC transporter C family | no | no | 0.914 | 0.992 | 0.694 | 0.0 | |
| Q28689 | 1564 | Canalicular multispecific | yes | no | 0.759 | 0.788 | 0.383 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | yes | no | 0.781 | 0.831 | 0.387 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | yes | no | 0.760 | 0.798 | 0.380 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | yes | no | 0.840 | 0.885 | 0.357 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | yes | no | 0.788 | 0.837 | 0.378 | 0.0 | |
| Q864R9 | 1531 | Multidrug resistance-asso | N/A | no | 0.802 | 0.851 | 0.370 | 0.0 |
| >sp|Q42093|AB2C_ARATH ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 2604 bits (6750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1282/1628 (78%), Positives = 1444/1628 (88%), Gaps = 10/1628 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ ++WYC+PV NGVWTK V NAFGAYTPCATDS V+ +S L+L+ LC YRIWL KD
Sbjct: 1 MGFEFIEWYCKPVPNGVWTKQVANAFGAYTPCATDSFVLGISQLVLLVLCLYRIWLALKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
KV+RFCL+S+LYNY L LAAY TAEPLF+LIMGIS LD DG GL PFE L ++A
Sbjct: 61 HKVERFCLRSRLYNYFLALLAAYATAEPLFRLIMGISVLDFDG-PGLPPFEAFGLGVKAF 119
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W ++++MI +ETK+YIRE RW+VRF VIY LVGD V++NL+LSVK +Y+S VLYLY SE
Sbjct: 120 AWGAVMVMILMETKIYIRELRWYVRFAVIYALVGDMVLLNLVLSVKEYYSSYVLYLYTSE 179
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V Q LFG+LL +++P LD YPGY P+R+E VDD EYEE+ G+QICPE+ ANIF +IFF
Sbjct: 180 VGAQVLFGILLFMHLPNLDTYPGYMPVRSETVDDYEYEEISDGQQICPEKHANIFDKIFF 239
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWMNPLM G ++ +TEKDVW LDTWDQTETL FQ W KE Q+P+PWLLRALN+SLG
Sbjct: 240 SWMNPLMTLGSKRPLTEKDVWYLDTWDQTETLFTSFQHSWDKELQKPQPWLLRALNNSLG 299
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGND SQFVGPLLLNQLL+SMQ+D PAW+GYIYAFSIFVGVV GVLCEAQ
Sbjct: 300 GRFWWGGFWKIGNDCSQFVGPLLLNQLLKSMQEDAPAWMGYIYAFSIFVGVVFGVLCEAQ 359
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRS L+AAVFRKSLR+T+E R+ F +GKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 360 YFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRRKFQTGKITNLMTTDAESLQQICQSLHT 419
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
+WSAPFRIII+L+LLY +LGVASL+GALLLV MFP+QT IIS+MQKLTKEGLQRTDKRIG
Sbjct: 420 MWSAPFRIIIALILLYQQLGVASLIGALLLVLMFPLQTVIISKMQKLTKEGLQRTDKRIG 479
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNE+LAAMD VKCYAWENSFQSKVQ VR+DELSWFRK+Q L A N FILNSIPVLVT+V
Sbjct: 480 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKSQLLGALNMFILNSIPVLVTIV 539
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQVVNANVSLKR+EE L EE+
Sbjct: 540 SFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEEVLATEER 599
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD+P+GSLVA+VG TGEGKTSLI
Sbjct: 600 ILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSLVAVVGSTGEGKTSLI 659
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNILFGS F+ +YE+AIDVTSL+
Sbjct: 660 SAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNILFGSPFDREKYERAIDVTSLK 719
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHVG+QVF
Sbjct: 720 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGQQVF 779
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKEEGT+E+LS+NG LFQ+LMENA
Sbjct: 780 EKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEELSSNGPLFQRLMENA 839
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKE-----GKSVLIKQEER 895
GK+EEY EE + E D +P ANG N L + SD +K+KE GKSVLIKQEER
Sbjct: 840 GKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDDKKSKEGNKKGGKSVLIKQEER 898
Query: 896 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF 955
ETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+SSTWLS WTD + K+HGPLF
Sbjct: 899 ETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLSEWTDAGTPKSHGPLF 958
Query: 956 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIIN 1015
YN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD MLHSILRAPM FFHTNPLGRIIN
Sbjct: 959 YNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRAPMSFFHTNPLGRIIN 1018
Query: 1016 RFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 1075
RFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST+SLWAIMPLL+LFY AYLYYQ
Sbjct: 1019 RFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAIMPLLVLFYGAYLYYQ 1078
Query: 1076 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 1135
+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD NIR+TLVNMG
Sbjct: 1079 NTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMG 1138
Query: 1136 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLR 1195
ANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFASTMGLLLSYALNITSLLT VLR
Sbjct: 1139 ANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLLSYALNITSLLTGVLR 1198
Query: 1196 LASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV 1255
LASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWPSSGSIKFEDVVLRYRP+LPPV
Sbjct: 1199 LASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWPSSGSIKFEDVVLRYRPQLPPV 1258
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315
LHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+GRILID D+ KFGLMDLRK+
Sbjct: 1259 LHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKGRILIDDCDVGKFGLMDLRKV 1318
Query: 1316 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375
LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHLKD IRRN LGLDA+VSEAGEN
Sbjct: 1319 LGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRRNPLGLDAEVSEAGEN 1378
Query: 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1435
FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN
Sbjct: 1379 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1438
Query: 1436 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENK 1495
TIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQSTGAANA+YLRSLVL + +
Sbjct: 1439 TIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQSTGAANAEYLRSLVLDNK---R 1495
Query: 1496 LREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVT 1555
++++ + GQR+WLASSRWAAAAQ+ALA SLTSSHNDLQ LE+ED ++ILK+T DAVVT
Sbjct: 1496 AKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDLQSLEIEDDSSILKRTNDAVVT 1555
Query: 1556 LQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERS 1615
L+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+VMSRLARNR+ Q DY+ E +
Sbjct: 1556 LRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLAVMSRLARNRMQQPDYNFEGNT 1615
Query: 1616 IDWDHVEM 1623
DWD+VEM
Sbjct: 1616 FDWDNVEM 1623
|
Pump for glutathione S-conjugates. Mediates the transport of S-conjugates such as GSH, S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS), glucuronides such as 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG), and of the chlorophyll catabolite such as B.napus nonfluorescent chlorophyll catabolite (Bn-NCC-1). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9C8G9|AB1C_ARATH ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2570 bits (6660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1252/1628 (76%), Positives = 1431/1628 (87%), Gaps = 11/1628 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+PLDWYC+PV NGVWTK VD AFGAYTPCA DS V+ +SHL+L+ LC YR+WLI KD
Sbjct: 1 MGFEPLDWYCKPVPNGVWTKTVDYAFGAYTPCAIDSFVLGISHLVLLILCLYRLWLITKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
KV +FCL+SK ++Y L LAAY TAEPLF+L+M IS LDLDG +G P+E L++EA
Sbjct: 61 HKVDKFCLRSKWFSYFLALLAAYATAEPLFRLVMRISVLDLDG-AGFPPYEAFMLVLEAF 119
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W S L+M VETK YI E RW+VRF VIY LVGD V++NL+LSVK +Y S LYLY+SE
Sbjct: 120 AWGSALVMTVVETKTYIHELRWYVRFAVIYALVGDMVLLNLVLSVKEYYGSFKLYLYISE 179
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V VQ FG LL VY P LDPYPGYTP+ TE +D EYEELPGGE ICPER AN+F IFF
Sbjct: 180 VAVQVAFGTLLFVYFPNLDPYPGYTPVGTENSEDYEYEELPGGENICPERHANLFDSIFF 239
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SW+NPLM G ++ +TEKDVW LDTWD+TETL FQK W KE ++PKPWLLRALN+SLG
Sbjct: 240 SWLNPLMTLGSKRPLTEKDVWHLDTWDKTETLMRSFQKSWDKELEKPKPWLLRALNNSLG 299
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGND SQFVGPLLLN+LL+SMQ + PAWIGYIYA SIFVGVVLGVLCEAQ
Sbjct: 300 GRFWWGGFWKIGNDCSQFVGPLLLNELLKSMQLNEPAWIGYIYAISIFVGVVLGVLCEAQ 359
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRS L+AAVFRKSLR+T+E RK F +GKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 360 YFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRKKFQTGKITNLMTTDAESLQQICQSLHT 419
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
+WSAPFRII++LVLLY +LGVAS++GAL LV MFP+QT IIS+ QKLTKEGLQRTDKRIG
Sbjct: 420 MWSAPFRIIVALVLLYQQLGVASIIGALFLVLMFPIQTVIISKTQKLTKEGLQRTDKRIG 479
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNE+LAAMD VKCYAWENSFQSKVQ VR+DELSWFRKAQ L+A N FILNSIPVLVTVV
Sbjct: 480 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNMFILNSIPVLVTVV 539
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+F+LLGGDLTPARAFTSLSLF+VLRFPLFMLPN+ITQ+VNANVSL R+EE L EE+
Sbjct: 540 SFGVFSLLGGDLTPARAFTSLSLFSVLRFPLFMLPNIITQMVNANVSLNRLEEVLSTEER 599
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
+LLPNPP+ G PAISIRNGYFSWDSKA+RPTL NINLDIP+GSLVA+VG TGEGKTSLI
Sbjct: 600 VLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLDIPLGSLVAVVGSTGEGKTSLI 659
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELP SDA+ +RG+VAYVPQVSWIFNATVRDNILFG+ F+ +YE+ IDVT+LQ
Sbjct: 660 SAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNILFGAPFDQEKYERVIDVTALQ 719
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV I DDPLSALDAHVG+QVF
Sbjct: 720 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCILDDPLSALDAHVGQQVF 779
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
++CI+ EL TRVLVTNQLHFLSQVD+I+LVHEG VKEEGT+E+L ++G LFQ+LMENA
Sbjct: 780 EKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKEEGTYEELCHSGPLFQRLMENA 839
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GK+E+Y EE + E VD + KP NG N+L K+ +T+ +KEG SVL+K+EERETGVV
Sbjct: 840 GKVEDYSEENGEAE-VDQTSVKPVENGNANNLQKDGIETKNSKEGNSVLVKREERETGVV 898
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+KVL RY++ALGG WVV++L++CY LT+ RVSSSTWLS WTD + KTHGPLFYN +Y
Sbjct: 899 SWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWLSEWTDSGTPKTHGPLFYNIVY 958
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LLSFGQV VTL NSYWLI+SSLYAAK++HDAML SILRAPMVFF TNPLGRIINRFAKD
Sbjct: 959 ALLSFGQVSVTLINSYWLIMSSLYAAKKMHDAMLGSILRAPMVFFQTNPLGRIINRFAKD 1018
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
+GDIDR VAVFVNMFMG ++QLLST +LIGIVST+SLWAIMPLL++FY AYLYYQ+T+RE
Sbjct: 1019 MGDIDRTVAVFVNMFMGSIAQLLSTVILIGIVSTLSLWAIMPLLVVFYGAYLYYQNTSRE 1078
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
+KR+DS TRSPVYAQFGEALNGLS+IRAYKAYDRMA+ING+SMD NIR+TLVNM ANRWL
Sbjct: 1079 IKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEINGRSMDNNIRFTLVNMAANRWL 1138
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
IRLE++GGLM+WLTA+ AV+QNG A NQ+A+ASTMGLLLSYAL+ITS LTAVLRLASLA
Sbjct: 1139 GIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLLLSYALSITSSLTAVLRLASLA 1198
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVGNYIE+PSEAPLVIE+NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG+S
Sbjct: 1199 ENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGVS 1258
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F I P DKVGIVGRTGAGKSS+LN LFRIVELE+GRILID DI +FGLMDLRK+LGIIP
Sbjct: 1259 FLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILIDECDIGRFGLMDLRKVLGIIP 1318
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
Q+PVLFSGTVRFNLDPFSEH+DADLWE+LERAHLKD IRRN LGLDA+V+EAGENFSVGQ
Sbjct: 1319 QAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIRRNPLGLDAEVTEAGENFSVGQ 1378
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKILVLDEATAAVDVRTD LIQKTIREEFKSCTMLIIAHRLNTIIDC
Sbjct: 1379 RQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIREEFKSCTMLIIAHRLNTIIDC 1438
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENK-LREE 1499
D++L+LDSG+V E+ +PE LLSN SSFSKMVQSTG ANA+YLRS+ L ENK RE
Sbjct: 1439 DKVLVLDSGKVQEFSSPENLLSNGESSFSKMVQSTGTANAEYLRSITL----ENKRTREA 1494
Query: 1500 N----KQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVT 1555
N + ++GQR+W ASSRWAAAAQ+ALAVSLTSSHNDLQ LE+ED N+ILKKTKDAVVT
Sbjct: 1495 NGDDSQPLEGQRKWQASSRWAAAAQFALAVSLTSSHNDLQSLEIEDDNSILKKTKDAVVT 1554
Query: 1556 LQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERS 1615
L+ VLEGKHDKEIE+SLNQ ++S + WW +LY+M+EGL+VMSRLARNR+ DY+LE +S
Sbjct: 1555 LRSVLEGKHDKEIEDSLNQSDISRERWWPSLYKMVEGLAVMSRLARNRMQHPDYNLEGKS 1614
Query: 1616 IDWDHVEM 1623
DWD+VEM
Sbjct: 1615 FDWDNVEM 1622
|
Pump for glutathione S-conjugates. Mediates the transport of S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H0|AB12C_ARATH ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2209 bits (5724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1070/1488 (71%), Positives = 1260/1488 (84%), Gaps = 4/1488 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ L+WYC+PVA+G W K VD AFGAYTPCA DSLV+ VSH +L+GLCFYRIW+I +
Sbjct: 1 MGFEALNWYCKPVADGFWEKAVDGAFGAYTPCAIDSLVMLVSHFVLLGLCFYRIWIIFHN 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
K Q + L+ K YN +LG LA YC EP+ +L+MGIS D+D ++ PFE+ SL++EA
Sbjct: 61 TKAQIYVLRKKYYNCVLGLLACYCVVEPVLRLVMGISLFDMDEETDFPPFEVASLMVEAF 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W SML++I +ETK Y++EFRW+VRFGV+Y LV DAV+++L+L +KN N + LYL++S
Sbjct: 121 AWFSMLVLIGLETKQYVKEFRWYVRFGVLYVLVADAVLLDLVLPLKNSINRTALYLFISS 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
QALFG+LLL+Y+PELDPYPGY + E +D+ EY+ L GGE ICPER A+IFSRI+F
Sbjct: 181 RCSQALFGILLLIYIPELDPYPGYHIVNNEPLDNVEYDALRGGEHICPERHASIFSRIYF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
W+ PLM+ GY K ITEKDVW+LD WDQTETL +FQ+CW +ES+RPKPWLLRALN+SLG
Sbjct: 241 GWITPLMQLGYRKPITEKDVWQLDKWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFW G +KIGNDLSQFVGP++L+ LL+SMQ+ PAW+GY+YAF IFVGV LGVLCEAQ
Sbjct: 301 GRFWLAGIFKIGNDLSQFVGPVILSHLLRSMQEGDPAWVGYVYAFIIFVGVTLGVLCEAQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNV RVGFRLRSTLVAA+F KSLR+THEARKNFASGK+TN++TTDA LQQ+ Q LH
Sbjct: 361 YFQNVWRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQISQQLHG 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRII+S++LLY +LGVASL G+L+L + P+QT IIS+M+KLTKEGLQ TDKR+G
Sbjct: 421 LWSAPFRIIVSMILLYQQLGVASLFGSLILFLLIPLQTLIISKMRKLTKEGLQWTDKRVG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
+ NEIL++MD VKCYAWE SF+S++Q +RN+ELSWFRKAQ L+A NSFILNSIPV+VTVV
Sbjct: 481 ITNEILSSMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTVV 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+F LLGGDLTPARAFTSLSLFAVLRFPL MLPN+++QVVNANVSL+R+EE LL+EE+
Sbjct: 541 SFGVFVLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
IL NPPL G PAISI+NGYFSWDSK +PTL +INL+IPVG+LVAIVGGTGEGKTSLI
Sbjct: 601 ILAQNPPLQPGTPAISIKNGYFSWDSKTTKPTLSDINLEIPVGTLVAIVGGTGEGKTSLI 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGEL S VIRG+VAYVPQVSWIFNATVR+NILFGS FE RY +AID T+LQ
Sbjct: 661 SAMLGELSHAETTSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDATALQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDLLPG D+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHV QVF
Sbjct: 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVAHQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D C++ EL GKTRVLVTNQLHFL +D+IILV EGM+KEEGTF +LS +G LF+KLMENA
Sbjct: 781 DSCMKDELRGKTRVLVTNQLHFLPLMDKIILVSEGMIKEEGTFVELSKSGILFKKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKM+ E + E + + + +L T++ K +SVLIKQEERETG++
Sbjct: 841 GKMDATQEVNTNDENILKLGPTVTVDVSERNL----GSTKQGKRRRSVLIKQEERETGII 896
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+ VL RYK+A+GGLWVV+ILL CY TE LRVSSSTWLS WTDQS+ K + P FY +Y
Sbjct: 897 SWNVLMRYKEAVGGLWVVMILLACYLATEVLRVSSSTWLSIWTDQSTSKNYSPGFYIVVY 956
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LL FGQV VT NS+WLI SSL+AA+RLHDAML SILRAPM+FFHTNP GR+INRF+KD
Sbjct: 957 ALLGFGQVAVTFTNSFWLITSSLHAARRLHDAMLSSILRAPMLFFHTNPTGRVINRFSKD 1016
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
+GDIDRNVA +NMFM Q+ QLLSTF LIG VST+SLWAIMPLL+LFYAAYLYYQST+RE
Sbjct: 1017 IGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSRE 1076
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
V+RLDS+TRSP+YAQFGEALNGLS+IRAYKAYDRMA INGKSMD NIR+TL N +NRWL
Sbjct: 1077 VRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWL 1136
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
IRLE +GG+MIWLTATFAV+QNG+ NQ FASTMGLLLSY LNITSLL+ VLR AS A
Sbjct: 1137 TIRLETLGGVMIWLTATFAVLQNGNTNNQAGFASTMGLLLSYTLNITSLLSGVLRQASRA 1196
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSIKFEDV LRYRP LPPVLHGL+
Sbjct: 1197 ENSLNSVERVGNYIDLPSEATDIIENNRPVCGWPSGGSIKFEDVHLRYRPGLPPVLHGLT 1256
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F + PS+KVG+VGRTGAGKSSMLN LFRIVE+E+GRI+ID D+AKFGL D+R++L IIP
Sbjct: 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKGRIMIDDCDVAKFGLTDVRRVLSIIP 1316
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
QSPVLFSGTVRFN+DPFSEH+DA LWEAL RAH+KD I RN GLDA+V E GENFSVGQ
Sbjct: 1317 QSPVLFSGTVRFNIDPFSEHNDAGLWEALHRAHIKDVISRNPFGLDAEVCEGGENFSVGQ 1376
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKILVLDEATA+VDVRTD+LIQ+TIREEFKSCTML+IAHRLNTIIDC
Sbjct: 1377 RQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC 1436
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1488
D+IL+L SG+VLEYD+P+ELLS + S+F +MV STG ANAQYL +LV
Sbjct: 1437 DKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H1|AB11C_ARATH ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 2142 bits (5550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1033/1488 (69%), Positives = 1237/1488 (83%), Gaps = 4/1488 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ L+WYC+P+A G W K D AFGAYTPCA DSLV+ VS+ +L+GLCFYRIW+ +
Sbjct: 1 MGFEALNWYCKPIAEGFWEKTPDGAFGAYTPCAIDSLVMIVSNSVLLGLCFYRIWITLYN 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
K Q + L+ Y+ +L LA C EP+ +L+MGIS D+ ++ L PFE+ SL++EA
Sbjct: 61 AKAQIYVLRKMYYHCVLWILACCCVVEPVLRLVMGISLFDMGDETDLPPFEVASLMVEAF 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W +ML++I +ETK Y++EFRW+VRFGV+Y LV DAV+++L+L +KN N + LYL +S
Sbjct: 121 AWFAMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTALYLCISS 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
QALFG+LLLVY+PELD YP Y + E +D+ EY+ LPGG ICPER A+IFS I+F
Sbjct: 181 RCCQALFGILLLVYIPELDLYPDYHILNNESLDNVEYDALPGGVNICPERYASIFSGIYF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWM PLM+ GY K ITE+DVW+LD WDQTETL +FQ+CW +ES+RPKPWLLRALN+SLG
Sbjct: 241 SWMTPLMQLGYRKPITERDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
RFW GG +K+G+DLSQFVGP++L+ +LQSM + PAW+GY+YAF IF GV GVLC++Q
Sbjct: 301 RRFWLGGIFKVGHDLSQFVGPVILSHILQSMIEGDPAWVGYVYAFLIFFGVTFGVLCQSQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQ+V RVGFRLRSTLVAA+F KSLR+T++ARKNFASGK+TN++TTDA LQ + + LH
Sbjct: 361 YFQHVGRVGFRLRSTLVAAIFHKSLRLTNKARKNFASGKVTNMITTDANALQLIAEQLHG 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRII+S+VLLY +LGVAS+ G+L+L + P QT I+ +M+KLTKEGLQ TDKR+G
Sbjct: 421 LWSAPFRIIVSMVLLYQQLGVASIFGSLILFLLIPFQTLIVRKMRKLTKEGLQWTDKRVG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
++ EILA+MD VKCYAWE SF+S++Q +RN+ELSWFRKAQ L+A NSFILNS PV+VT+V
Sbjct: 481 IIYEILASMDIVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSTPVVVTLV 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG++ LLGGDLTPARAFTSLSLFAVLR PL LPN+I+Q VNANVSL+R+EE LL+EE+
Sbjct: 541 SFGVYVLLGGDLTPARAFTSLSLFAVLRSPLSTLPNLISQAVNANVSLQRIEELLLSEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
IL NPPL G PAISI+NGYFSWDSK +PTL +INL+IPVGSLVAIVGGTGEGKTSLI
Sbjct: 601 ILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGEL +S IRG+VAYVPQVSWIFNAT+R+NILFGS FE RY +AIDVT+LQ
Sbjct: 661 SAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENILFGSDFESERYWRAIDVTALQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDL PG D TEIGERGVNISGGQKQRVSMARAVYSNSD++IFDDP SALDAHV QVF
Sbjct: 721 HDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPFSALDAHVAHQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KEEG F +LS +G LF+KLMENA
Sbjct: 781 DSCVKHELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGNFAELSKSGTLFKKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKM + ++ T D SK + + ++ K G+S+L+KQEERETG++
Sbjct: 841 GKM----DATQEVNTNDENISKLGPTVTIDVSERSLGSIQQGKWGRSMLVKQEERETGII 896
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+ V+ RY A+GGLWVV+ILL+CY TE LRV SSTWLS WTDQS+ K++ P FY +Y
Sbjct: 897 SWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWLSIWTDQSTPKSYSPGFYIVVY 956
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILRAPM+FF TNP GR+INRF+KD
Sbjct: 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFETNPTGRVINRFSKD 1016
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
+GDIDRNVA +NMFM Q+ QLLSTF LIGIVST+SLWAIMPLL+LFYA Y+YYQST+RE
Sbjct: 1017 IGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWAIMPLLILFYATYIYYQSTSRE 1076
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
V+RLDS+TRSP+YA FGEALNGLS+IRAYKAYDRMA INGKSMD NIR+TL + +NRWL
Sbjct: 1077 VRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLASTSSNRWL 1136
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
IR E +GG+MIWLTATFAV++ G+AENQ FASTMGLLLSY LNIT+LL+ VLR AS A
Sbjct: 1137 TIRSESLGGVMIWLTATFAVLRYGNAENQAVFASTMGLLLSYTLNITTLLSGVLRQASKA 1196
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI+FEDV LRYRP LPPVLHGLS
Sbjct: 1197 ENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIQFEDVHLRYRPGLPPVLHGLS 1256
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F + PS+KVG+VGRTGAGKSSMLN L+RIVELE+GRILID +D+AKFGL DLR++L IIP
Sbjct: 1257 FFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKGRILIDDYDVAKFGLTDLRRVLSIIP 1316
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
QSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I RN GLDA+VSE GENFSVGQ
Sbjct: 1317 QSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQ 1376
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKIL LDEATA+VDVRTD+LIQ+TIREEFKSCTMLIIAHRLNTIIDC
Sbjct: 1377 RQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIREEFKSCTMLIIAHRLNTIIDC 1436
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1488
D+IL+L SG+VLEYD+P+ELLS + S+F KMV STG N QYL +LV
Sbjct: 1437 DKILVLSSGQVLEYDSPQELLSRDTSAFFKMVHSTGPENGQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1367 (38%), Positives = 800/1367 (58%), Gaps = 134/1367 (9%)
Query: 228 PERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQR- 286
P A+ S+I FSW + ++ KGY++ +T +DVW +D + +T+ ++F+ AKE ++
Sbjct: 194 PSVTASFLSKISFSWYDSVVLKGYKRPLTLEDVWDIDEEFKAKTIVSRFEVHMAKELKKA 253
Query: 287 --------------------------------------------------PKPWLLRALN 296
PK WL++ +
Sbjct: 254 RKAFQKRQQKKSQKNSRLQGLNKNQSQSQDVLVLEETKKKNKKSGTTKDFPKSWLVKTIF 313
Query: 297 SSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQ-DGPAWIGYIYAFSIFVGVVLGV 355
+ K+ DL F+ P LL L+ + + AW+GYI+A +F ++
Sbjct: 314 KTFYMVLLKSFLLKLVYDLLTFLNPQLLKLLITFVSDPNSYAWLGYIFAILLFAVALIQS 373
Query: 356 LCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC 415
+C YF +G + +T++A V++K+L I++ A++ + G+ NLM+ DA++L V
Sbjct: 374 ICLQTYFHMCFNLGMCVGTTVMATVYKKALTISNLAKRQYTIGETVNLMSVDAQKLMDVT 433
Query: 416 QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRT 475
+H +WS+ +I++S+ L+ ELG + L G ++V + PV + ++ + + + ++
Sbjct: 434 NFIHLVWSSVLQIVLSIYFLWVELGPSVLAGVGVMVLLIPVNGILATKNRNIQFKNMKYK 493
Query: 476 DKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 535
DKR+ +MNEIL+ M +K +AWE SF+ +V N+R EL R ++ + F+L PV
Sbjct: 494 DKRLRIMNEILSGMKILKYFAWEPSFKDQVHNLRKKELKNLRTFAYMQSVVMFLLYLTPV 553
Query: 536 LVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEE 593
LV+V +F ++ L+ + L +AFTS++LF +LRFP+ MLPN+I+ ++ A+VS+ R+E+
Sbjct: 554 LVSVTTFSVYVLVDSNNILDAEKAFTSITLFNILRFPMSMLPNVISAMLQASVSVDRLEK 613
Query: 594 FLLAEE---KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVG 650
+L ++ + +P A+ F+WD E PT+ N+NLDI G LVA+VG
Sbjct: 614 YLSGDDLDTSAIQRDPNFDK---AVQFSEASFTWDRNLE-PTIRNVNLDIMPGQLVAVVG 669
Query: 651 GTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 710
G GK+SL+SAMLGE+ V I+GT AYVPQ SWI N T++DNILFG+ F+ RY
Sbjct: 670 TVGSGKSSLMSAMLGEMENV-HGHITIKGTTAYVPQQSWIQNGTIKDNILFGAEFDERRY 728
Query: 711 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQR+S+ARA Y NSD++I DDPLSA
Sbjct: 729 QRVLEACALLPDLEILPGGDLAEIGEKGINLSGGQKQRISLARASYQNSDIYILDDPLSA 788
Query: 771 LDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-- 826
+DAHVG+ +F++ + G L+GKTR+LVT+ LHFL QVD I++V G + E+G++ L
Sbjct: 789 VDAHVGKHIFNKVLGPNGLLNGKTRLLVTHSLHFLPQVDEIVVVENGTILEKGSYSSLLA 848
Query: 827 -----SNNGELFQKLMENAGK--------------------MEEYVEE-------KEDG- 853
+ N ++F K ++ G+ +EE+ E+ +E+
Sbjct: 849 KKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDDDDSGLISSIEEFPEDSISLTLKRENSL 908
Query: 854 ----------ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFK 903
K+ K + + PKE + K LIK+E ETG V F
Sbjct: 909 HRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK-----LIKKEFMETGKVKFS 963
Query: 904 VLSRYKDALGGLWVVLI-LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNT---- 958
+ +Y A+G W ++ ++ Y L + S+ WLS WT S+ T+ Y
Sbjct: 964 IYLKYLQAIG--WCSIVGIIFAYVLNSVAFIGSNLWLSAWTSDSN--TYNGTNYPASQRD 1019
Query: 959 ----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRII 1014
I+ +L Q L L S+W +A+ LH +L++ILRAPM FF+T P+GRI+
Sbjct: 1020 LRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAPMSFFNTTPIGRIV 1079
Query: 1015 NRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 1074
NRFA D+ +D + + +M ++ST ++I + + + I+PL +++ A ++Y
Sbjct: 1080 NRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIIIPLAIIYVAVQVFY 1139
Query: 1075 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 1134
+T+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N +D N + +
Sbjct: 1140 VATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEIGIDTNQKCVSSWI 1199
Query: 1135 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL 1194
+NRWLA RLE+VG L+++ +A V+ + +G +LS ALNIT L ++
Sbjct: 1200 TSNRWLAFRLELVGNLVVFSSALMMVIYRDTLS-----GDVVGFVLSNALNITQTLNWLV 1254
Query: 1195 RLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPP 1254
R+ S E ++ AVER+ YI++ +EAP V + RPP GWP G I+F + +RYRPEL
Sbjct: 1255 RMTSETETNIVAVERITEYIKVENEAPWVTD-KRPPAGWPHKGEIQFSNYQVRYRPELDL 1313
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G I IDG DIA GL DLR
Sbjct: 1314 VLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDGIDIASIGLHDLRG 1373
Query: 1315 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374
L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE AHLK + GL +VSEA +
Sbjct: 1374 KLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLSREVSEAED 1433
Query: 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1434
N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LIQ TIR EF CT++ IAHRL
Sbjct: 1434 NLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHRL 1493
Query: 1435 NTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQ 1481
+TI+D D+I++LD+G ++EY +PEELL + G FS M + +G N
Sbjct: 1494 HTIMDSDKIMVLDNGNIVEYGSPEELLESAG-PFSLMAKESGIENVN 1539
|
Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/1372 (38%), Positives = 793/1372 (57%), Gaps = 104/1372 (7%)
Query: 187 FGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFFSWMNPL 246
+ +LLLV + L +P P+ +E V+D + CPE A+ SRI F W+ L
Sbjct: 178 YFILLLVQLI-LSCFPEKPPLFSEAVNDP---------KPCPEFSASFLSRITFWWITGL 227
Query: 247 MKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKE----------------------- 283
M +G+ + + KD+W L+ D +E + K WAKE
Sbjct: 228 MIQGHRRPLEAKDLWSLNKEDTSEEIVPGLAKNWAKEWAKTKRQPLNMLYSSKKQQKSSD 287
Query: 284 ----------------SQRP-KPWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQ 326
SQR + L + L + G F +K +DL F GP +L
Sbjct: 288 SNGEVMEEAEALIIKPSQRSSEASLSKVLYKTFGPYFLMSFLFKAAHDLLMFTGPEILKL 347
Query: 327 LLQSMQ-QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSL 385
L+ + + P W GY Y +FV L L QYF G RL++ +V ++RK+L
Sbjct: 348 LINFVNNKSAPNWQGYFYTGLLFVCACLQTLILHQYFHICFVTGMRLKTAIVGVIYRKAL 407
Query: 386 RITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLL 445
IT+ ARK G+I NLM+ DA++ + ++ +WSAP ++I++L LL+ LG + L
Sbjct: 408 VITNSARKTSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVLA 467
Query: 446 GALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKV 505
G +++ + P+ + + + ++ D RI LMNEIL + +K YAWE +F+ KV
Sbjct: 468 GVAVMILLVPINAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKV 527
Query: 506 QNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSL 563
+R EL +K+ +LAA +F P LV + +F ++ + + L +AF SL+L
Sbjct: 528 LEIRQKELKVLKKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLAL 587
Query: 564 FAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLPAISIRN 619
F +LRFPL +LP +I+ +V A+VSLKR+ FL EE L P+ P+T+ +I ++N
Sbjct: 588 FNILRFPLNILPMVISSIVEASVSLKRLRVFLSHEE--LDPDSIIRGPITNAEGSIVVKN 645
Query: 620 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 679
FSW SK + P+L +IN +P GSL+A+VG G GK+SL+SA+LGE+ + V++G
Sbjct: 646 ATFSW-SKTDPPSLNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDK-KEGYVVVKG 703
Query: 680 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 739
++AYVPQ +WI NAT+ DNI+FG +RY++ I+ +L DL++LP GD TEIGE+GV
Sbjct: 704 SIAYVPQQAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGV 763
Query: 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVT 797
N+SGGQKQRVS+ARAVY N+D ++FDDPLSA+DAHVG+ +F++ I +G L KTRVLVT
Sbjct: 764 NLSGGQKQRVSLARAVYCNADTYLFDDPLSAVDAHVGKHIFEKVIGPKGILKNKTRVLVT 823
Query: 798 NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVD 857
+ +++L Q+D I+++ +G + E G++++L F + + E+ +E D +
Sbjct: 824 HAVNYLPQMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMES-SDASSPS 882
Query: 858 NKTSKPAANGV-DNDLPKE-------ASDTRKTKEGKS-------------------VLI 890
K KP NGV ND + S T + GKS L
Sbjct: 883 GKEGKPVENGVLVNDATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQKPLAEKNSWKLT 942
Query: 891 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT 950
+ + +TG V V Y A+G L++ + + + ++S+ WLS WTD +
Sbjct: 943 EADTAKTGRVKATVYWEYMKAIG-LYISFLSVFLFMCNHIASLASNYWLSLWTDDPVV-- 999
Query: 951 HGPLFYNTI----YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFH 1006
+G Y + Y L Q + S + I ++A++ LH +LH++LR+PM FF
Sbjct: 1000 NGTQQYTNVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPMSFFE 1059
Query: 1007 TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 1066
P G +++RF+K++ ID + + MFMG ++ ++I + + ++ I PL L+
Sbjct: 1060 RTPSGNLVSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPPLGLV 1119
Query: 1067 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKN 1126
+ +Y +T+R++KRL+S++RSPVY+ F E L G+S IRA++ R N +D+N
Sbjct: 1120 YLLVQRFYVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMKVDEN 1179
Query: 1127 IRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNI 1186
+ ++ ANRWLA+RLE VG ++ A FAV+ A N+ + +GL +SY+L I
Sbjct: 1180 QKAYYPSIVANRWLAVRLEFVGNCIVLFAALFAVI----ARNKLS-PGLIGLSVSYSLQI 1234
Query: 1187 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 1246
T+ L ++R+ S E ++ AVERV Y E+ EA IE P WP G ++F L
Sbjct: 1235 TAYLNWLVRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEFRGFGL 1294
Query: 1247 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 1306
RYR +L VL ++ TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK
Sbjct: 1295 RYREDLDLVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDGINIAK 1354
Query: 1307 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
GL DLR + IIPQ P+LFSG++R NLDPF +HSD D+W +LE AHLK+ + L+
Sbjct: 1355 IGLHDLRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSLPDKLN 1414
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1426
+ SE GEN SVGQRQL+ L+RALLR+SKILVLDEATAAVD+ TD LIQ TI+ +F+ CT
Sbjct: 1415 HECSEGGENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQFEECT 1474
Query: 1427 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 1478
+L IAHRLNTI+D R+L+LD G V+E D+P+ LL +G +S M + +G A
Sbjct: 1475 VLTIAHRLNTIMDYTRVLVLDRGEVVECDSPDNLLQAKGLFYS-MAKDSGLA 1525
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/1356 (38%), Positives = 798/1356 (58%), Gaps = 122/1356 (8%)
Query: 232 ANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQR----- 286
A+ S I +SW + ++ KGY++ +T +DVW++D +T+TL ++F+ +E Q+
Sbjct: 198 ASFLSSITYSWYDSIILKGYKRPLTLEDVWEVDEEMKTKTLVSKFETHMKRELQKARRAL 257
Query: 287 ------------------------------------------------PKPWLLRALNSS 298
PK WL++AL +
Sbjct: 258 QRRQEKSSQQNSGARLPGLNKNQSQSQDALVLEDVEKKKKKSGTKKDVPKSWLMKALFKT 317
Query: 299 LGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQ-SMQQDGPAWIGYIYAFSIFVGVVLGVLC 357
K+ ND+ FV P LL L+ + +D WIGY+ A +F ++ C
Sbjct: 318 FYMVLLKSFLLKLVNDIFTFVSPQLLKLLISFASDRDTYLWIGYLCAILLFTAALIQSFC 377
Query: 358 EAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQA 417
YFQ ++G ++R+ ++A+V++K+L +++ ARK + G+ NLM+ DA++L V
Sbjct: 378 LQCYFQLCFKLGVKVRTAIMASVYKKALTLSNLARKEYTVGETVNLMSVDAQKLMDVTNF 437
Query: 418 LHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDK 477
+H LWS+ +I++S+ L+ ELG + L G ++V + P+ + ++ + + + ++ DK
Sbjct: 438 MHMLWSSVLQIVLSIFFLWRELGPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDK 497
Query: 478 RIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV 537
R+ +MNEIL+ + +K +AWE SF+ +VQN+R EL L F+ PVLV
Sbjct: 498 RLKIMNEILSGIKILKYFAWEPSFRDQVQNLRKKELKNLLAFSQLQCVVIFVFQLTPVLV 557
Query: 538 TVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFL 595
+VV+F ++ L+ + L +AFTS++LF +LRFPL MLP MI+ ++ A+VS +R+E++L
Sbjct: 558 SVVTFSVYVLVDSNNILDAQKAFTSITLFNILRFPLSMLPMMISSMLQASVSTERLEKYL 617
Query: 596 LAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 655
++ + A+ F+W+ +E T+ ++NLDI G LVA++G G G
Sbjct: 618 GGDDLDTSAIRHDCNFDKAMQFSEASFTWEHDSE-ATVRDVNLDIMAGQLVAVIGPVGSG 676
Query: 656 KTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID 715
K+SLISAMLGE+ V I+GT AYVPQ SWI N T++DNILFG+ F RY++ ++
Sbjct: 677 KSSLISAMLGEMENV-HGHITIKGTTAYVPQQSWIQNGTIKDNILFGTEFNEKRYQQVLE 735
Query: 716 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 775
+L DL++LPGGD+ EIGE+G+N+SGGQKQR+S+ARA Y N D+++ DDPLSA+DAHV
Sbjct: 736 ACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQNLDIYLLDDPLSAVDAHV 795
Query: 776 GRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNGEL 832
G+ +F++ + G L GKTR+LVT+ +HFL QVD I+++ G + E+G++ L + GE
Sbjct: 796 GKHIFNKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKGSYSALLAKKGEF 855
Query: 833 FQKL---MENAGKMEEYV-----EEKEDGETVDNKTSKPAANGVDNDLPKEAS------- 877
+ L + + G EE EE++D + + + + + +E S
Sbjct: 856 AKNLKTFLRHTGPEEEATVHDGSEEEDDDYGLISSVEEIPEDAASITMRRENSFRRTLSR 915
Query: 878 -------------DTRKTKEGKSV-----------LIKQEERETGVVSFKVLSRYKDALG 913
++ KT+ S+ LIK+E ETG V F + Y A+G
Sbjct: 916 SSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQKLIKKEFIETGKVKFSIYLEYLQAIG 975
Query: 914 GLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQ 967
L+ + ++L + + + S+ WLS WT S + T P +Y L Q
Sbjct: 976 -LFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDYPASQRDMRVGVYGALGLAQ 1034
Query: 968 VLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDID-- 1025
+ +W ++A+ LH +L++ILRAPM FF T P GRI+NRFA D+ +D
Sbjct: 1035 GIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVNRFAGDISTVDDT 1094
Query: 1026 --RNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 1083
+++ ++ F+G ++ST V+I + + + ++PL +++ + ++Y ST+R+++R
Sbjct: 1095 LPQSLRSWITCFLG----IISTLVMICMATPVFTIIVIPLGIIYVSVQMFYVSTSRQLRR 1150
Query: 1084 LDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR 1143
LDS+TRSP+Y+ F E ++GL IRA++ R N +D N + + +NRWLAIR
Sbjct: 1151 LDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWITSNRWLAIR 1210
Query: 1144 LEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENS 1203
LE+VG L ++ +A V+ + T+G +LS ALNIT L ++R+ S E +
Sbjct: 1211 LELVGNLTVFFSALMMVIYRDTLS-----GDTVGFVLSNALNITQTLNWLVRMTSEIETN 1265
Query: 1204 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 1263
+ AVER+ Y ++ +EAP V + RPPP WPS G I+F + +RYRPEL VL G++ I
Sbjct: 1266 IVAVERITEYTKVENEAPWVTD-KRPPPDWPSKGKIQFNNYQVRYRPELDLVLRGITCDI 1324
Query: 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 1323
+K+G+VGRTGAGKSS+ N LFRI+E G+I+IDG DIA GL DLR+ L IIPQ P
Sbjct: 1325 GSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQDP 1384
Query: 1324 VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383
+LFSG++R NLDPF+ +SD ++W+ALE AHLK + LGL +V+EAG N S+GQRQL
Sbjct: 1385 ILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGNLSIGQRQL 1444
Query: 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 1443
L L RALLR+SKILVLDEATAAVD+ TD LIQ TI+ EF CT++ IAHRL+TI+D D++
Sbjct: 1445 LCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLHTIMDSDKV 1504
Query: 1444 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1479
++LD+G+++E +PEELL G F M + G N
Sbjct: 1505 MVLDNGKIIECGSPEELLQIPG-PFYFMAKEAGIEN 1539
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1511 (35%), Positives = 854/1511 (56%), Gaps = 147/1511 (9%)
Query: 83 YCTAEPLFQLIMGISALDLD-------GQSGLAPFEILSLIIEALCWCSMLIMIFVETKV 135
Y + ++ ++A+DL GQ+ + P + I+ W +L++ ++
Sbjct: 64 YLAKQVFVVFLLILAAIDLSLALTEDTGQATVPPVRYTNPILYLCTW--LLVLAVQHSRQ 121
Query: 136 Y-IREFRWFVR-FGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSEVIVQALFGLLLLV 193
+ +R+ WF+ F ++ L G LI ++ S++ Y Y+ V F ++LL+
Sbjct: 122 WCVRKNSWFLSLFWILSVLCGVFQFQTLIRALLKDSKSNMAYSYL--FFVSYGFQIVLLI 179
Query: 194 YVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFFSWMNPLMKKGYEK 253
L + G P P A+ S I FSW + + KGY+
Sbjct: 180 ----LTAFSG-----------------PSDSTQTPSVTASFLSSITFSWYDRTVLKGYKH 218
Query: 254 FITEKDVWKLDTWDQTETLNNQFQKCWAKESQR--------------------------- 286
+T +DVW +D +T ++ ++F+ K+ Q+
Sbjct: 219 PLTLEDVWDIDEGFKTRSVTSKFEAAMTKDLQKARQAFQRRLQKSQRKPEATLHGLNKKQ 278
Query: 287 -----------------------PKPWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLL 323
PK WL+++L + K+ +DL F+ P L
Sbjct: 279 SQSQDVLVLEEAKKKSEKTTKDYPKSWLIKSLFKTFHVVILKSFILKLIHDLLVFLNPQL 338
Query: 324 LNQLLQSMQQDGP-AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFR 382
L L+ ++ W GYI A +F ++ C YFQ+ +G +R+T+++++++
Sbjct: 339 LKLLIGFVKSSNSYVWFGYICAILMFAVTLIQSFCLQSYFQHCFVLGMCVRTTVMSSIYK 398
Query: 383 KSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVA 442
K+L +++ ARK + G+ NLM+ D+++L + +WS+ +I +S+ L+ ELG +
Sbjct: 399 KALTLSNLARKQYTIGETVNLMSVDSQKLMDATNYMQLVWSSVIQITLSIFFLWRELGPS 458
Query: 443 SLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQ 502
L G ++V + PV + ++++ + + ++ DKR+ +MNEIL+ + +K +AWE SFQ
Sbjct: 459 ILAGVGVMVLLIPVNGVLATKIRNIQVQNMKNKDKRLKIMNEILSGIKILKYFAWEPSFQ 518
Query: 503 SKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTS 560
+VQ +R EL + L + FIL P+LV+VV+F ++ L+ L +AFTS
Sbjct: 519 EQVQGIRKKELKNLLRFGQLQSLLIFILQITPILVSVVTFSVYVLVDSANVLNAEKAFTS 578
Query: 561 LSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG 620
++LF +LRFPL MLP + + ++ A+VS+ R+E +L ++ +++ A+
Sbjct: 579 ITLFNILRFPLSMLPMVTSSILQASVSVDRLERYLGGDDLDTSAIRRVSNFDKAVKFSEA 638
Query: 621 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT 680
F+WD E T+ ++NLDI G LVA+VG G GK+SL+SAMLGE+ V I+G+
Sbjct: 639 SFTWDPDLE-ATIQDVNLDIKPGQLVAVVGTVGSGKSSLVSAMLGEMENV-HGHITIQGS 696
Query: 681 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 740
AYVPQ SWI N T++DNILFGS + +Y++ + +L DL++LPGGD+ EIGE+G+N
Sbjct: 697 TAYVPQQSWIQNGTIKDNILFGSEYNEKKYQQVLKACALLPDLEILPGGDMAEIGEKGIN 756
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTN 798
+SGGQKQRVS+ARA Y ++D++I DDPLSA+DAHVG+ +F++ + G L+GKTR+ VT+
Sbjct: 757 LSGGQKQRVSLARAAYQDADIYILDDPLSAVDAHVGKHIFNKVVGPNGLLAGKTRIFVTH 816
Query: 799 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK----LMENAGKMEEYV------- 847
+HFL QVD I+++ +G + E+G++ DL + +F + M+++G E
Sbjct: 817 GIHFLPQVDEIVVLGKGTILEKGSYRDLLDKKGVFARNWKTFMKHSGPEGEATVNNDSEA 876
Query: 848 EEKEDG-----ETVDNKTSKPA---------------------ANGVDNDLPKEASDTRK 881
E+ +DG E + + A + N L + + K
Sbjct: 877 EDDDDGLIPTMEEIPEDAASLAMRRENSLRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLK 936
Query: 882 TKEGK---SVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTW 938
KE + LIK+E ETG V F + +Y A+ G W +L ++L Y L + S+ W
Sbjct: 937 EKEKEVEGQKLIKKEFVETGKVKFSIYLKYLQAV-GWWSILFIILFYGLNNVAFIGSNLW 995
Query: 939 LSYWTDQS-------SLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 991
LS WT S + +H + ++ L Q + L ++ W I + A+K LH
Sbjct: 996 LSAWTSDSDNLNGTNNSSSHRDMRIG-VFGALGLAQGICLLISTLWSIYACRNASKALHG 1054
Query: 992 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 1051
+L +ILRAPM FF T P GRI+NRF+ D+ +D + + +M + T V+I +
Sbjct: 1055 QLLTNILRAPMRFFDTTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICM 1114
Query: 1052 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1111
+ + I+PL +L+ + ++Y +T+R+++RLDS+T+SP+Y+ F E + GL IRA++
Sbjct: 1115 ATPVFAIIIIPLSILYISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEH 1174
Query: 1112 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 1171
R N K +D N + + +NRWLAIRLE+VG L+++ +A V+ +
Sbjct: 1175 QQRFLAWNEKQIDINQKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLT---- 1230
Query: 1172 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 1231
+G +LS ALNIT L ++R+ S AE ++ AVER+ YI + +EAP V + RPP
Sbjct: 1231 -GDVVGFVLSNALNITQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTD-KRPPA 1288
Query: 1232 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 1291
WP G I+F + +RYRPEL VL G++ I +KVG+VGRTGAGKSS+ N LFRI+E
Sbjct: 1289 DWPRHGEIQFNNYQVRYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILE 1348
Query: 1292 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 1351
G+I+IDG D+A GL DLR+ L IIPQ P+LFSG++R NLDPF+++SD ++W ALE
Sbjct: 1349 SAGGQIIIDGIDVASIGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALEL 1408
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
AHL+ + LGL ++V+E G+N S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD
Sbjct: 1409 AHLRSFVSGLQLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETD 1468
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
+LIQ TIR+EF CT++ IAHRL+TI+D D+I++LD+G+++EY +PEELLSN G SF M
Sbjct: 1469 SLIQTTIRKEFSQCTVITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRG-SFYLM 1527
Query: 1472 VQSTGAANAQY 1482
+ G N +
Sbjct: 1528 AKEAGIENVNH 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/1390 (37%), Positives = 794/1390 (57%), Gaps = 111/1390 (7%)
Query: 167 NFYNSSVLYLYMSEVIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQI 226
+ + S YLY + V+VQ + L + +P+ +E V D
Sbjct: 168 DVFRDSTFYLYFTLVLVQLV-----------LSCFSDCSPLFSETVHD---------RNP 207
Query: 227 CPERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETL-----NNQFQKC-- 279
CPE A+ SRI F W+ +M GY + + D+W L+ D +E + NN ++C
Sbjct: 208 CPESSASFLSRITFWWITGMMVHGYRQPLESSDLWSLNKEDTSEEVVPVLVNNWKKECDK 267
Query: 280 -----------WAKESQRPK------------------------PWLLRALNSSLGGRFW 304
K+ +PK P L + L + G F
Sbjct: 268 SRKQPVRIVYAPPKDPSKPKGSSQLDVNEEVEALIVKSPHKDREPSLFKVLYKTFGPYFL 327
Query: 305 WGGFWKIGNDLSQFVGPLLLNQLLQSMQ-QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQ 363
+K +DL F GP +L ++ + ++ P W GY Y +FV L L QYF
Sbjct: 328 MSFLYKALHDLMMFAGPKILELIINFVNDREAPDWQGYFYTALLFVSACLQTLALHQYFH 387
Query: 364 NVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWS 423
G R+++ +V AV+RK+L IT+ ARK+ G+I NLM+ DA++ + ++ +WS
Sbjct: 388 ICFVSGMRIKTAVVGAVYRKALLITNAARKSSTVGEIVNLMSVDAQRFMDLATYINMIWS 447
Query: 424 APFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMN 483
AP ++I++L L+ LG + L G +++ M P+ + + + ++ D RI LMN
Sbjct: 448 APLQVILALYFLWLSLGPSVLAGVAVMILMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMN 507
Query: 484 EILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFG 543
EIL + +K YAWE +FQ KV ++R +EL +K+ +LAA +F P LV + +F
Sbjct: 508 EILNGIKVLKLYAWELAFQDKVMSIRQEELKVLKKSAYLAAVGTFTWVCTPFLVALSTFA 567
Query: 544 MFTLLG--GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI 601
+F + L +AF SL+LF +LRFPL +LP +I+ +V A+VSLKR+ FL EE
Sbjct: 568 VFVTVDERNILDAKKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE-- 625
Query: 602 LLPNP----PLTSGLP-AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGK 656
L P+ + SG +I+++N F+W ++ E PTL I IP G+LVA+VG G GK
Sbjct: 626 LEPDSIERRSIKSGEGNSITVKNATFTW-ARGEPPTLNGITFSIPEGALVAVVGQVGCGK 684
Query: 657 TSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 716
+SL+SA+L E+ V + ++G+VAYVPQ +WI N ++R+NILFG + Y+ ++
Sbjct: 685 SSLLSALLAEMDKV-EGHVTLKGSVAYVPQQAWIQNDSLRENILFGHPLQENYYKAVMEA 743
Query: 717 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
+L DL++LP GD TEIGE+GVN+SGGQKQRVS+ARAVYSNSD+++FDDPLSA+DAHVG
Sbjct: 744 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNSDIYLFDDPLSAVDAHVG 803
Query: 777 RQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 834
+ +F++ + G L KTR+LVT+ + +L QVD II++ G + E G++++L + F
Sbjct: 804 KHIFEKVVGPMGLLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLDRDGAFA 863
Query: 835 KLMENAGKMEEYVEEKEDGETVDNKTSKPAANG------VDNDLPKEASDTRK------- 881
+ + E+ + ++D + K SKP NG V L + S++
Sbjct: 864 EFLRTYANAEQDLASEDDSVSGSGKESKPVENGMLVTDTVGKHLQRHLSNSSSHSGDTSQ 923
Query: 882 ------------TKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTE 929
KE L++ ++ +TG V V Y A+G L++ + + +
Sbjct: 924 QHSSIAELQKAGAKEETWKLMEADKAQTGQVQLSVYWNYMKAIG-LFITFLSIFLFLCNH 982
Query: 930 TLRVSSSTWLSYWTDQSSLKTHGPLFYN---TIYSLLSFGQVLVTLANSYWLIISSLYAA 986
++S+ WLS WTD + N ++Y L Q S + I ++A+
Sbjct: 983 VSALASNYWLSLWTDDPPVVNGTQANRNFRLSVYGALGILQGAAIFGYSMAVSIGGIFAS 1042
Query: 987 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 1046
+RLH +L+++LR+PM FF P G ++NRF+K+L +D + + MFMG + ++
Sbjct: 1043 RRLHLDLLYNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLFSVIGAV 1102
Query: 1047 VLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTI 1106
++I + + ++ I PL L+++ +Y +++R++KRL+S++RSPVY+ F E L G+S I
Sbjct: 1103 IIILLATPIAAVIIPPLGLVYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVI 1162
Query: 1107 RAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSA 1166
RA++ +R + +D+N + ++ ANRWLA+RLE VG ++ A FAV+ S
Sbjct: 1163 RAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSL 1222
Query: 1167 ENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 1226
A +GL +SY+L IT+ L ++R++S E ++ AVER+ Y E EAP I+
Sbjct: 1223 S-----AGLVGLSVSYSLQITAYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQE 1277
Query: 1227 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 1286
PP WP SG ++F D LRYR +L VL ++ TI +KVGIVGRTGAGKSS+ L
Sbjct: 1278 TAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHINVTIEGGEKVGIVGRTGAGKSSLTLGL 1337
Query: 1287 FRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW 1346
FRI E G I+IDG +IAK GL +LR + IIPQ PVLFSG++R NLDPFS++SD ++W
Sbjct: 1338 FRINESAEGEIIIDGVNIAKIGLHNLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1397
Query: 1347 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 1406
ALE AHLK + L+ + +E GEN SVGQRQL+ L+RALLR++KILVLDEATAAV
Sbjct: 1398 MALELAHLKGFVSALPDKLNHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1457
Query: 1407 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1466
D+ TD LIQ TIR +F+ CT+L IAHRLNTI+D R+++LD G V E P ELL G
Sbjct: 1458 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVRECGAPSELLQQRGI 1517
Query: 1467 SFSKMVQSTG 1476
+S M + G
Sbjct: 1518 FYS-MAKDAG 1526
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/1420 (37%), Positives = 798/1420 (56%), Gaps = 117/1420 (8%)
Query: 142 WFVRFGVIYTLVGDAVMVNLILSVK-NFYNSSVLYLYMSEVIVQALFGLLLLVYVPELDP 200
W V ++ +M L V+ + + Y+Y S V++Q + L
Sbjct: 142 WLVALLCALAILRSKIMTALKEDVQVDLFRDMTFYVYFSLVLIQLV-----------LSC 190
Query: 201 YPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFFSWMNPLMKKGYEKFITEKDV 260
+ +P+ +E + D CPE A+ SRI F W+ L+ +GY + + D+
Sbjct: 191 FSDRSPLFSETIHDP---------NPCPESSASFLSRITFWWITGLIVRGYRQPLEGSDL 241
Query: 261 WKLDTWDQTETLNNQFQKCWAKESQR-----------------PK--------------- 288
W L+ D +E + K W KE + PK
Sbjct: 242 WSLNKEDTSEQVVPVLVKNWKKECAKTRKQPVKVVYSSKDPAQPKDSSKVDANEEVEALI 301
Query: 289 ---------PWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQ-DGPAW 338
P L + L + G F F+K +DL F GP +L L+ + P W
Sbjct: 302 VKSPQKEWNPSLFKVLYKTFGPYFLMSFFFKAIHDLMMFSGPEILKLLINFVNDTKAPDW 361
Query: 339 IGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASG 398
GY Y +FV L L QYF G R+++ ++ AV+RK+L IT+ ARK+ G
Sbjct: 362 QGYFYTALLFVAACLQTLVLHQYFHICFVSGMRIKTAVIGAVYRKALVITNAARKSSTVG 421
Query: 399 KITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQT 458
+I NLM+ DA++ + ++ +WSAP ++I++L LL+ LG L G ++V M PV
Sbjct: 422 EIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPPILAGVAVMVLMVPVNA 481
Query: 459 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRK 518
+ + + ++ D RI LMNEIL + +K YAWE +F+ KV +R +EL +K
Sbjct: 482 VMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKK 541
Query: 519 AQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPN 576
+ +LAA +F P LV + +F ++ + + L +AF SL+LF +LRFPL +LP
Sbjct: 542 SAYLAAVGTFTWVCTPFLVALCTFAVYVTIDKNNVLDAQKAFVSLALFNILRFPLNILPM 601
Query: 577 MITQVVNANVSLKRMEEFLLAEEKILLPNP----PLTSG--LPAISIRNGYFSWDSKAER 630
+I+ +V A+VSLKR+ FL EE L P+ P+ G +I++RN F+W ++++
Sbjct: 602 VISSIVQASVSLKRLRIFLSHEE--LEPDSIERRPVKDGGDTNSITVRNATFTW-ARSDP 658
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 690
PTL I IP G+LVA+VG G GK+SL+SA+L E+ V + ++G+VAYVPQ +WI
Sbjct: 659 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVALKGSVAYVPQQAWI 717
Query: 691 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750
N ++++NILFG E Y I +L DL++LP GD TEIGE+GVN+SGGQKQRVS
Sbjct: 718 QNDSLQENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVS 777
Query: 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDR 808
+ARAVY N+D+++FDDPLSA+DAHVG+ +F+ I +G L KTR+LVT+ + +L QVD
Sbjct: 778 LARAVYCNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDV 837
Query: 809 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETV---DNKTSKPAA 865
II++ G + E G++++L F + + E+ + +++G T K +K
Sbjct: 838 IIVMSGGKISEMGSYQELLARDGAFAEFLRTYASAEQEQDPEDNGVTGVSGPGKEAKQME 897
Query: 866 NGV--------------------DNDLPKEASDTRK------TKEGKSVLIKQEERETGV 899
NG+ D+ ++ + T + KE L++ ++ +TG
Sbjct: 898 NGMLVTDSAGKQLQRQLSSSSSYSGDVSRQHNSTAELQKDGAKKEETWKLMEADKAQTGQ 957
Query: 900 VSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQ---SSLKTHGPLFY 956
V V Y A+G L++ + + + ++S+ WLS WTD + + H +
Sbjct: 958 VKLSVYWDYMKAIG-LFISFLSIFLFICNHVAALASNYWLSLWTDDPIVNGTQEHTKVRL 1016
Query: 957 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 1016
++Y L Q + S + I + A++ LH +LHSILR+PM FF P G ++NR
Sbjct: 1017 -SVYGALGISQGIAVFGYSMAVSIGGILASRCLHVDLLHSILRSPMSFFERTPSGNLVNR 1075
Query: 1017 FAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 1076
F+K+L +D + + MFMG + ++ ++I + + ++ I PL L+++ +Y +
Sbjct: 1076 FSKELDTVDSMIPEVIKMFMGSLFNVIGACIVILLATPIAAIIIPPLGLIYFFVQRFYVA 1135
Query: 1077 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 1136
++R++KRL+S++RSPVY+ F E L G+S IRA++ +R + +D+N + ++ A
Sbjct: 1136 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1195
Query: 1137 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 1196
NRWLA+RLE VG ++ A FAV+ S A +GL +SY+L +T+ L ++R+
Sbjct: 1196 NRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQVTTYLNWLVRM 1250
Query: 1197 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 1256
+S E ++ AVER+ Y E EAP I+ PP WP G ++F + LRYR +L VL
Sbjct: 1251 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSNWPQVGRVEFRNYCLRYREDLDFVL 1310
Query: 1257 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316
++ TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IA+ GL DLR +
Sbjct: 1311 RHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIARIGLHDLRFKI 1370
Query: 1317 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376
IIPQ PVLFSG++R NLDPFS++SD ++W +LE AHLK + LD + +E GEN
Sbjct: 1371 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKGFVSALPDKLDHECAEGGENL 1430
Query: 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1436
SVGQRQL+ L+RALLR++KILVLDEATAAVD+ TD LIQ TIR +F+ CT+L IAHRLNT
Sbjct: 1431 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDCTVLTIAHRLNT 1490
Query: 1437 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1476
I+D R+++LD G + EY P +LL G F M + G
Sbjct: 1491 IMDYTRVIVLDKGEIQEYGAPSDLLQQRG-LFYNMARDAG 1529
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Macaca fascicularis (taxid: 9541) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1623 | ||||||
| 225443996 | 1623 | PREDICTED: ABC transporter C family memb | 0.999 | 0.999 | 0.852 | 0.0 | |
| 359483925 | 1616 | PREDICTED: ABC transporter C family memb | 0.995 | 0.999 | 0.850 | 0.0 | |
| 224116630 | 1617 | multidrug resistance protein ABC transpo | 0.995 | 0.998 | 0.84 | 0.0 | |
| 356555514 | 1620 | PREDICTED: ABC transporter C family memb | 0.996 | 0.998 | 0.822 | 0.0 | |
| 356549118 | 1620 | PREDICTED: ABC transporter C family memb | 0.996 | 0.998 | 0.819 | 0.0 | |
| 255571320 | 1569 | mgatp-energized glutathione s-conjugate | 0.964 | 0.997 | 0.850 | 0.0 | |
| 171854661 | 1617 | putative multidrug resistance-associated | 0.995 | 0.999 | 0.803 | 0.0 | |
| 357447229 | 1712 | ABC transporter C family member [Medicag | 0.996 | 0.945 | 0.774 | 0.0 | |
| 225443998 | 1624 | PREDICTED: ABC transporter C family memb | 1.0 | 0.999 | 0.782 | 0.0 | |
| 297823253 | 1623 | multidrug resistance-associated protein | 0.996 | 0.996 | 0.790 | 0.0 |
| >gi|225443996|ref|XP_002280819.1| PREDICTED: ABC transporter C family member 2 isoform 1 [Vitis vinifera] gi|297740795|emb|CBI30977.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2857 bits (7405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1385/1624 (85%), Positives = 1513/1624 (93%), Gaps = 2/1624 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
MAF PL WYCRPV NGVW K+VDNAFG YTPCATD+LV+S+SH IL+ LCFYRIW IKKD
Sbjct: 1 MAFGPLVWYCRPVTNGVWAKLVDNAFGVYTPCATDTLVISISHFILLSLCFYRIWRIKKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
FKVQRFCL+S YNYML LA YCTAEPLF+LIMGIS +LDGQ+GLAPFE++SLII+A
Sbjct: 61 FKVQRFCLRSNYYNYMLALLAGYCTAEPLFRLIMGISVFNLDGQAGLAPFEVVSLIIKAF 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
WCSML++I +ETKVYIREFRW++RFGV+YTL+G+AVM+NLILSVK Y+ S+LYLY+SE
Sbjct: 121 TWCSMLVLIGIETKVYIREFRWYLRFGVLYTLIGEAVMLNLILSVKELYDRSILYLYISE 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V++Q LFG+LLL YVP+LDPYPGYTPM T VDDAEYEE+PGGEQICPER NIFSRI F
Sbjct: 181 VVLQVLFGILLLFYVPDLDPYPGYTPMWTGSVDDAEYEEIPGGEQICPERHVNIFSRITF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
WMNP+M+ G ++ ITEKDVWKLD+WDQTETLNN FQ+CWA+E+ RPKPWLLRALN SLG
Sbjct: 241 GWMNPIMQLGSKRPITEKDVWKLDSWDQTETLNNNFQRCWAEEALRPKPWLLRALNRSLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGNDLSQFVGPL+LNQLLQSMQQ PAWIGYIYAFSIFVGVV GVL EAQ
Sbjct: 301 GRFWWGGFWKIGNDLSQFVGPLILNQLLQSMQQGDPAWIGYIYAFSIFVGVVFGVLFEAQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVGFR+RSTLVAAVFRKSL++THE R+ FASGKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 361 YFQNVMRVGFRVRSTLVAAVFRKSLKLTHEGRRQFASGKITNLMTTDAEALQQICQSLHT 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRIII++VLLY +LGVASLLGAL+LV +FP+QT +ISRMQKL+KEGLQRTDKRIG
Sbjct: 421 LWSAPFRIIIAMVLLYQQLGVASLLGALMLVLLFPIQTVVISRMQKLSKEGLQRTDKRIG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNEILAAMD VKCYAWENSFQSKVQ+VRN+ELSWFRKA FL A N F+LNSIPV+V V+
Sbjct: 481 LMNEILAAMDTVKCYAWENSFQSKVQSVRNEELSWFRKASFLGAFNVFMLNSIPVVVIVI 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQ VNANVSLKR+EE LAEE+
Sbjct: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEELFLAEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL N+NLDIPVG LVAIVGGTGEGKTSL+
Sbjct: 601 ILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLDIPVGGLVAIVGGTGEGKTSLV 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNATVR NILFGS FE ARYEKAIDVT+LQ
Sbjct: 661 SAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNILFGSPFEAARYEKAIDVTALQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHVGRQVF
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
DRCI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE+LSNNG +FQKLMENA
Sbjct: 781 DRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNNGMMFQKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKMEEYVEE E +D+KTSKP ANGV + LP +S+T K KEGKSVLIKQEERETGVV
Sbjct: 841 GKMEEYVEENGAEENIDDKTSKPVANGVVDKLPNNSSNTSKPKEGKSVLIKQEERETGVV 900
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+KVL RYK+ALGGLWVV+IL +CY LTETLRVSSSTWLS WTDQ +THGP +YN IY
Sbjct: 901 SWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWLSQWTDQGGSRTHGPGYYNLIY 960
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAML SILRAPM+FFHTNP+GRIINRFAKD
Sbjct: 961 AMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILRAPMLFFHTNPIGRIINRFAKD 1020
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
LGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVSTMSLWAIMPLL+LFY+AYLYYQ+TARE
Sbjct: 1021 LGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLVLFYSAYLYYQNTARE 1080
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD NIRYTLVNM +NRWL
Sbjct: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGQSMDNNIRYTLVNMSSNRWL 1140
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
AIRLE +GGLMIWLTATFAV+QN AENQ+AFASTMGLLLSYALNITSLLT VLRLASLA
Sbjct: 1141 AIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLLLSYALNITSLLTGVLRLASLA 1200
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVG+YIELPSEAPLVIESNRPPP WPSSGSIKFEDVVLRYRPELPPVLHGLS
Sbjct: 1201 ENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
FTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILID DI+KFGL DLRK+LGIIP
Sbjct: 1261 FTISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDISKFGLRDLRKVLGIIP 1320
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
QSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNSLGLDA+VSEAGENFSVGQ
Sbjct: 1321 QSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQ 1380
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC
Sbjct: 1381 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKL-REE 1499
DR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQSTGAANA+YLRSLVLGGE ENKL RE+
Sbjct: 1441 DRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQSTGAANAEYLRSLVLGGEGENKLGRED 1500
Query: 1500 NKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGV 1559
N+++DGQRRWLASSRW AAAQ+ALAVSLTSS NDLQ+LE+ED+N+ILKKTKDAV+TLQGV
Sbjct: 1501 NRRLDGQRRWLASSRWTAAAQFALAVSLTSSQNDLQQLEIEDENSILKKTKDAVITLQGV 1560
Query: 1560 LEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWD 1619
LEGKHDK IEE+LNQ++VS DGWWS+LYRMIEGL+VMSRLARNRL QS+ E+RSIDWD
Sbjct: 1561 LEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEGLAVMSRLARNRL-QSENGFEDRSIDWD 1619
Query: 1620 HVEM 1623
+EM
Sbjct: 1620 RIEM 1623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483925|ref|XP_003633036.1| PREDICTED: ABC transporter C family member 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2840 bits (7362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1381/1624 (85%), Positives = 1506/1624 (92%), Gaps = 9/1624 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
MAF PL WYCRPV NGVW K+VDNAFG YTPCATD+LV+S+SH IL+ LCFYRIW IKKD
Sbjct: 1 MAFGPLVWYCRPVTNGVWAKLVDNAFGVYTPCATDTLVISISHFILLSLCFYRIWRIKKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
FKVQRFCL+S YNYML LA YCTAEPLF+LIMGIS +LDGQ+GLAPFE A
Sbjct: 61 FKVQRFCLRSNYYNYMLALLAGYCTAEPLFRLIMGISVFNLDGQAGLAPFE-------AF 113
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
WCSML++I +ETKVYIREFRW++RFGV+YTL+G+AVM+NLILSVK Y+ S+LYLY+SE
Sbjct: 114 TWCSMLVLIGIETKVYIREFRWYLRFGVLYTLIGEAVMLNLILSVKELYDRSILYLYISE 173
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V++Q LFG+LLL YVP+LDPYPGYTPM T VDDAEYEE+PGGEQICPER NIFSRI F
Sbjct: 174 VVLQVLFGILLLFYVPDLDPYPGYTPMWTGSVDDAEYEEIPGGEQICPERHVNIFSRITF 233
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
WMNP+M+ G ++ ITEKDVWKLD+WDQTETLNN FQ+CWA+E+ RPKPWLLRALN SLG
Sbjct: 234 GWMNPIMQLGSKRPITEKDVWKLDSWDQTETLNNNFQRCWAEEALRPKPWLLRALNRSLG 293
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGNDLSQFVGPL+LNQLLQSMQQ PAWIGYIYAFSIFVGVV GVL EAQ
Sbjct: 294 GRFWWGGFWKIGNDLSQFVGPLILNQLLQSMQQGDPAWIGYIYAFSIFVGVVFGVLFEAQ 353
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVGFR+RSTLVAAVFRKSL++THE R+ FASGKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 354 YFQNVMRVGFRVRSTLVAAVFRKSLKLTHEGRRQFASGKITNLMTTDAEALQQICQSLHT 413
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRIII++VLLY +LGVASLLGAL+LV +FP+QT +ISRMQKL+KEGLQRTDKRIG
Sbjct: 414 LWSAPFRIIIAMVLLYQQLGVASLLGALMLVLLFPIQTVVISRMQKLSKEGLQRTDKRIG 473
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNEILAAMD VKCYAWENSFQSKVQ+VRN+ELSWFRKA FL A N F+LNSIPV+V V+
Sbjct: 474 LMNEILAAMDTVKCYAWENSFQSKVQSVRNEELSWFRKASFLGAFNVFMLNSIPVVVIVI 533
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQ VNANVSLKR+EE LAEE+
Sbjct: 534 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEELFLAEER 593
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL N+NLDIPVG LVAIVGGTGEGKTSL+
Sbjct: 594 ILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLDIPVGGLVAIVGGTGEGKTSLV 653
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNATVR NILFGS FE ARYEKAIDVT+LQ
Sbjct: 654 SAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNILFGSPFEAARYEKAIDVTALQ 713
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHVGRQVF
Sbjct: 714 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 773
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
DRCI+GEL GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE+LSNNG +FQKLMENA
Sbjct: 774 DRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNNGMMFQKLMENA 833
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKMEEYVEE E +D+KTSKP ANGV + LP +S+T K KEGKSVLIKQEERETGVV
Sbjct: 834 GKMEEYVEENGAEENIDDKTSKPVANGVVDKLPNNSSNTSKPKEGKSVLIKQEERETGVV 893
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+KVL RYK+ALGGLWVV+IL +CY LTETLRVSSSTWLS WTDQ +THGP +YN IY
Sbjct: 894 SWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWLSQWTDQGGSRTHGPGYYNLIY 953
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAML SILRAPM+FFHTNP+GRIINRFAKD
Sbjct: 954 AMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILRAPMLFFHTNPIGRIINRFAKD 1013
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
LGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVSTMSLWAIMPLL+LFY+AYLYYQ+TARE
Sbjct: 1014 LGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLVLFYSAYLYYQNTARE 1073
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD NIRYTLVNM +NRWL
Sbjct: 1074 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGQSMDNNIRYTLVNMSSNRWL 1133
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
AIRLE +GGLMIWLTATFAV+QN AENQ+AFASTMGLLLSYALNITSLLT VLRLASLA
Sbjct: 1134 AIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLLLSYALNITSLLTGVLRLASLA 1193
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVG+YIELPSEAPLVIESNRPPP WPSSGSIKFEDVVLRYRPELPPVLHGLS
Sbjct: 1194 ENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLS 1253
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
FTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILID DI+KFGL DLRK+LGIIP
Sbjct: 1254 FTISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDISKFGLRDLRKVLGIIP 1313
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
QSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNSLGLDA+VSEAGENFSVGQ
Sbjct: 1314 QSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQ 1373
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC
Sbjct: 1374 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1433
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKL-REE 1499
DR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQSTGAANA+YLRSLVLGGE ENKL RE+
Sbjct: 1434 DRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQSTGAANAEYLRSLVLGGEGENKLGRED 1493
Query: 1500 NKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGV 1559
N+++DGQRRWLASSRW AAAQ+ALAVSLTSS NDLQ+LE+ED+N+ILKKTKDAV+TLQGV
Sbjct: 1494 NRRLDGQRRWLASSRWTAAAQFALAVSLTSSQNDLQQLEIEDENSILKKTKDAVITLQGV 1553
Query: 1560 LEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWD 1619
LEGKHDK IEE+LNQ++VS DGWWS+LYRMIEGL+VMSRLARNRL QS+ E+RSIDWD
Sbjct: 1554 LEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEGLAVMSRLARNRL-QSENGFEDRSIDWD 1612
Query: 1620 HVEM 1623
+EM
Sbjct: 1613 RIEM 1616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116630|ref|XP_002317351.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222860416|gb|EEE97963.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2768 bits (7176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1365/1625 (84%), Positives = 1506/1625 (92%), Gaps = 10/1625 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ LDWYC+PV +GVWTK V NAFGAYTPCATD+LVVS+S+L+LM LCFY+IWL KKD
Sbjct: 1 MGFEALDWYCKPVRDGVWTKAVQNAFGAYTPCATDTLVVSLSYLVLMALCFYKIWLTKKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
FK+QRFCL+SK Y Y+L LA Y TAEPL++L+MGIS L+LDGQ+GLAPFE AL
Sbjct: 61 FKLQRFCLRSKWYAYLLALLALYSTAEPLYRLVMGISVLNLDGQTGLAPFE-------AL 113
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
WCS+L+MI VE KVYIREFRWFVRFGVIYTLVGDAVM+NLIL+VK FYN++VL+LY+SE
Sbjct: 114 AWCSLLVMIVVEIKVYIREFRWFVRFGVIYTLVGDAVMLNLILTVKEFYNNAVLHLYISE 173
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
VIVQ LFG+LLLVYVP+LDPYPGYTPM+ E VDDAEYEELPGGE ICPER ANI S+I F
Sbjct: 174 VIVQGLFGILLLVYVPDLDPYPGYTPMQIESVDDAEYEELPGGEYICPERHANIISKIVF 233
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
WM+PLMK GY + ITEKDVWKLDTWD+TETLN++FQKCWA+E ++PKPWLLRAL+SSLG
Sbjct: 234 GWMSPLMKLGYRRPITEKDVWKLDTWDRTETLNDRFQKCWAEELRKPKPWLLRALHSSLG 293
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGND SQFVGPL+LNQLL+SMQ+ PAWIGY+YAFSIF GVV GVLCEAQ
Sbjct: 294 GRFWWGGFWKIGNDASQFVGPLVLNQLLKSMQEGDPAWIGYVYAFSIFAGVVFGVLCEAQ 353
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLR+TLVAAVFRKSLR+THE R+ FASGKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 354 YFQNVMRVGYRLRATLVAAVFRKSLRLTHEGRRKFASGKITNLMTTDAEALQQICQSLHT 413
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRII+++VLLY +L VASLLGAL+LV +FP+QTF+ISRMQKL+KEGLQRTDKRIG
Sbjct: 414 LWSAPFRIIVAMVLLYQQLNVASLLGALMLVLLFPIQTFVISRMQKLSKEGLQRTDKRIG 473
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNEILAAMD VKCYAWE+SFQ+KVQ VR+DELSWFRKA L ACNSFILNSIPV+VTV+
Sbjct: 474 LMNEILAAMDTVKCYAWESSFQAKVQGVRDDELSWFRKASLLGACNSFILNSIPVMVTVI 533
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFGM+TLLGG+LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR+EE LAEE+
Sbjct: 534 SFGMYTLLGGNLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRLEELFLAEER 593
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILLPNP L LPA+SI+NGYFSWDSKAERPTL NINLD+P+GSLVA+VG TGEGKTSL+
Sbjct: 594 ILLPNPLLDPCLPAVSIKNGYFSWDSKAERPTLSNINLDVPIGSLVAVVGSTGEGKTSLV 653
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELP SDAS VIRGTVAYVPQVSWIFNATVRDNILFGS F+ ARYEKAIDVT+LQ
Sbjct: 654 SAMLGELPATSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDSARYEKAIDVTALQ 713
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDA VGRQVF
Sbjct: 714 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAQVGRQVF 773
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D+CI+GELS KTR+LVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG LFQKLMENA
Sbjct: 774 DKCIKGELSKKTRILVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGMLFQKLMENA 833
Query: 841 GKMEEYVEEKEDGETVDNKT-SKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGV 899
GKMEEY E++ + E VD+KT SK ANGV N+LPK S T+K KEGKSVLIKQEERETGV
Sbjct: 834 GKMEEYEEQENN-EIVDHKTSSKQVANGVMNNLPKNVSGTKKPKEGKSVLIKQEERETGV 892
Query: 900 VSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI 959
V+ KVL RYK+ALGG WVV++L +CY +TE LRVSSSTWLS WT+Q + K HGPL+YN I
Sbjct: 893 VNLKVLIRYKNALGGAWVVMVLFMCYLMTEVLRVSSSTWLSNWTNQGTSKRHGPLYYNLI 952
Query: 960 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 1019
YS LS GQV VTL NSYWLI SSLYAAKRLHDAML+SILRAPMVFFHTNPLGRIINRFAK
Sbjct: 953 YSFLSIGQVSVTLLNSYWLITSSLYAAKRLHDAMLNSILRAPMVFFHTNPLGRIINRFAK 1012
Query: 1020 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAR 1079
DLGDIDRNVA+FVNMFMGQ+SQLLSTFVLIGIVSTMSLWAIMPLL+LFY AYLYYQSTAR
Sbjct: 1013 DLGDIDRNVAIFVNMFMGQISQLLSTFVLIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAR 1072
Query: 1080 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 1139
EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA INGKSMD N+RYTLVNMGANRW
Sbjct: 1073 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMASINGKSMDNNVRYTLVNMGANRW 1132
Query: 1140 LAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASL 1199
LAIRLE +GG+MIW TATFAV+QNG A+NQ+AFASTMGLLLSYALNITSLLTAVLRLASL
Sbjct: 1133 LAIRLETLGGIMIWFTATFAVMQNGRADNQQAFASTMGLLLSYALNITSLLTAVLRLASL 1192
Query: 1200 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGL 1259
AENSLN+VERVG YIELPSEAPLVIESNRPPPGWPSSG+IKFEDVVLRYRPELPPVLHGL
Sbjct: 1193 AENSLNSVERVGTYIELPSEAPLVIESNRPPPGWPSSGAIKFEDVVLRYRPELPPVLHGL 1252
Query: 1260 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319
SFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILID DI+KFGLMDLRK+LGII
Sbjct: 1253 SFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDISKFGLMDLRKVLGII 1312
Query: 1320 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1379
PQ+PVLFSGTVRFNLDPFSEH+DADLWEALERAHLKD IRRNSLGLD++V+EAG+NFSVG
Sbjct: 1313 PQAPVLFSGTVRFNLDPFSEHNDADLWEALERAHLKDVIRRNSLGLDSEVTEAGDNFSVG 1372
Query: 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1439
QRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF+SCTMLIIAHRLNTIID
Sbjct: 1373 QRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFRSCTMLIIAHRLNTIID 1432
Query: 1440 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKL-RE 1498
CDR++LLDSGRVLEYDTPEELLSNE S+FSKMVQSTGAANAQYLRSLV+GGE E++L RE
Sbjct: 1433 CDRVILLDSGRVLEYDTPEELLSNENSAFSKMVQSTGAANAQYLRSLVMGGERESRLGRE 1492
Query: 1499 ENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQG 1558
ENKQ+DG RRWLASSRWAAAAQ+ALAVSLTSS NDLQ+LE+ED+N++LKKTKDAVVTLQ
Sbjct: 1493 ENKQLDGPRRWLASSRWAAAAQFALAVSLTSSQNDLQQLEIEDENSVLKKTKDAVVTLQR 1552
Query: 1559 VLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDW 1618
VLEGKHDK I+ESLNQ+++S DGWWSALY+M+EGL++MSRL R+RLHQSDY LE+++IDW
Sbjct: 1553 VLEGKHDKVIDESLNQYQISRDGWWSALYKMVEGLAMMSRLGRHRLHQSDYGLEDKTIDW 1612
Query: 1619 DHVEM 1623
+HVEM
Sbjct: 1613 NHVEM 1617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555514|ref|XP_003546076.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2751 bits (7132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1336/1625 (82%), Positives = 1485/1625 (91%), Gaps = 7/1625 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
MAF+PL+WYCRPVANGVWTK V+NAFGAYTPCA DSLV+SVS+LIL+GLC YRIWLI KD
Sbjct: 1 MAFEPLNWYCRPVANGVWTKSVENAFGAYTPCAVDSLVISVSNLILLGLCIYRIWLIMKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
F V+RFCL+S LYNY+LG LA YC AEPL++LIMGIS L+LDGQ+ LAPFEI+SLIIEAL
Sbjct: 61 FTVKRFCLRSNLYNYILGLLALYCVAEPLYRLIMGISVLNLDGQTQLAPFEIISLIIEAL 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
WCS+LI+I +ETKVYIREFRWFVRFG+IY +VGDAVM NLI+S K FY+SSVLY Y+SE
Sbjct: 121 AWCSILILIGIETKVYIREFRWFVRFGLIYAIVGDAVMFNLIISAKEFYSSSVLYFYISE 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V+ Q LFG+LLLVYVP LDPYPGYTP+ TE++ DA Y+ELPGG+ ICPER ANI SRI F
Sbjct: 181 VVGQVLFGILLLVYVPTLDPYPGYTPIGTEMITDATYDELPGGDMICPERSANILSRIMF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWMNP+MK GYE+ +TEKD+WKLDTW++TETL N+FQKCW +ES++ KPWLLRALN+SLG
Sbjct: 241 SWMNPIMKLGYERPLTEKDIWKLDTWERTETLINKFQKCWVEESRKSKPWLLRALNASLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGF KIGND+SQF+GPL+LNQLLQSMQ P+W GY+YAFSIFVGVV GVLCEAQ
Sbjct: 301 GRFWWGGFCKIGNDISQFMGPLILNQLLQSMQNGEPSWTGYVYAFSIFVGVVFGVLCEAQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRSTLVAAVFRKSLR+THEARK FA+GKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 361 YFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQQICQSLHT 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAP RI++++VLLY +LGVASLLGAL+LV MFP+QTFIISRMQKL+KEGLQRTDKRIG
Sbjct: 421 LWSAPVRIVVAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKLSKEGLQRTDKRIG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNEILAAMD +K YAWE+SFQSKVQ VR+DELSWFRKA L ACN FILNSIPV VTV+
Sbjct: 481 LMNEILAAMDTLKYYAWESSFQSKVQIVRDDELSWFRKASLLGACNGFILNSIPVFVTVI 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
+FG+FTLLGGDLTPARAFTSLSLF+VLRFPLFMLPN ITQVVNANVSLKR+E+ LLAEE+
Sbjct: 541 TFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
+LLPNPP+ GLPAISI+NGYFSWD+KAER +L NINLDIPVG LVA+VG TGEGKTSL+
Sbjct: 601 VLLPNPPIEPGLPAISIKNGYFSWDAKAERASLSNINLDIPVGCLVAVVGSTGEGKTSLV 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELPP++D+S V+RGTVAYVPQVSWIFNATVRDNILFGS F+PARY++AI+VT LQ
Sbjct: 661 SAMLGELPPMADSSVVLRGTVAYVPQVSWIFNATVRDNILFGSVFDPARYQRAINVTELQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHV RQVF
Sbjct: 721 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D+CI+G+L GKTRVLVTNQLHFLSQV+RIILVHEGMVKEEGTFE+LSN+G LFQKLMENA
Sbjct: 781 DKCIKGDLRGKTRVLVTNQLHFLSQVNRIILVHEGMVKEEGTFEELSNHGPLFQKLMENA 840
Query: 841 GKM-EEYVEEKEDGETVDNK-TSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETG 898
GKM E EEK D ET D K +SKP ANG ND K S K KEGKSVLIKQEER TG
Sbjct: 841 GKMEEYEEEEKVDTETTDQKPSSKPVANGAINDHAKSGS---KPKEGKSVLIKQEERATG 897
Query: 899 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNT 958
VVS VL+RYK ALGG WVV +L CY TETLR+SSSTWLS+WTDQS+ + + P+FYN
Sbjct: 898 VVSLNVLTRYKSALGGFWVVFVLFACYVSTETLRISSSTWLSHWTDQSATEGYNPVFYNM 957
Query: 959 IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFA 1018
IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH+AML SILRAPMVFF TNPLGR+INRFA
Sbjct: 958 IYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINRFA 1017
Query: 1019 KDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 1078
KDLGDIDRNVA FVNMF+GQVSQLLSTF+LIGIVSTMSLWAI+PLL+LFY AYLYYQSTA
Sbjct: 1018 KDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTA 1077
Query: 1079 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 1138
REVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD NIR+TLVNM NR
Sbjct: 1078 REVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNMSGNR 1137
Query: 1139 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 1198
WLAIRLE +GGLMIWLTATFAV+QNG AENQ+ FASTMGLLLSYALNITSLLT VLRLAS
Sbjct: 1138 WLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLAS 1197
Query: 1199 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1258
LAENSLNAVER+G YI+LPSEAP VI++NRPPPGWPS GSI+FEDVVLRYRPELPPVLHG
Sbjct: 1198 LAENSLNAVERIGTYIDLPSEAPSVIDNNRPPPGWPSLGSIRFEDVVLRYRPELPPVLHG 1257
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
LSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELE+GRILID +D+AKFGL DLRK+LGI
Sbjct: 1258 LSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEQGRILIDDYDVAKFGLADLRKVLGI 1317
Query: 1319 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1378
IPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNSLGLDA+VSEAGENFSV
Sbjct: 1318 IPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377
Query: 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1438
GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII
Sbjct: 1378 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1437
Query: 1439 DCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLRE 1498
DCDRILLLD G+VLEYDTPEELLSNEGS+FSKMVQSTGAAN+QYLRSL LGG+ RE
Sbjct: 1438 DCDRILLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGAANSQYLRSLALGGDKSE--RE 1495
Query: 1499 ENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQG 1558
ENK +D +R+WLASSRWAAAAQ+ALAVSLTSSHNDLQRLEVED+N+ILKKTKDA++TLQG
Sbjct: 1496 ENKHLDARRKWLASSRWAAAAQFALAVSLTSSHNDLQRLEVEDENSILKKTKDALITLQG 1555
Query: 1559 VLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDW 1618
VLE KHDKEIEESL Q ++S DGWWS+LY+MIEGL++MSRL NR HQSD+ E+RSI++
Sbjct: 1556 VLERKHDKEIEESLEQRQISPDGWWSSLYKMIEGLAIMSRLTVNRFHQSDFGFEDRSINF 1615
Query: 1619 DHVEM 1623
D V+M
Sbjct: 1616 DQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549118|ref|XP_003542944.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2734 bits (7086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1332/1625 (81%), Positives = 1486/1625 (91%), Gaps = 7/1625 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+PLDWYCRPVANGVWT+ V+NAFGAYTPCA DSLV+SVS+LIL+GLC YRIWLIKKD
Sbjct: 1 MTFEPLDWYCRPVANGVWTRSVENAFGAYTPCAVDSLVISVSNLILLGLCIYRIWLIKKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
F V+RF L+S LYNY+LG LA YC AEPL++LI+GIS L+LDGQ+ APFEI+SLIIEAL
Sbjct: 61 FTVKRFHLRSNLYNYILGLLALYCVAEPLYRLILGISVLNLDGQTQFAPFEIVSLIIEAL 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
WCS+LI+I +ETKVYIREFRWFVRFG+IY +VGDAVM NLI+SVK Y+SSVLYLY+SE
Sbjct: 121 AWCSILILIGIETKVYIREFRWFVRFGLIYAIVGDAVMFNLIISVKELYSSSVLYLYISE 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V+ Q LFG+LLLVYVP LDPYPGYTP+ ++++ DA Y+ELPGG+ ICPER ANI S+I F
Sbjct: 181 VVGQVLFGILLLVYVPTLDPYPGYTPIGSDMITDAAYDELPGGDMICPERNANILSKIMF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWMNP+MK GY++ +TEKD+WKLDTW++TETL N+FQKCW +ES++PKPWLLRALN+SLG
Sbjct: 241 SWMNPIMKLGYQRPLTEKDIWKLDTWERTETLINKFQKCWVEESRKPKPWLLRALNASLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGF KIGND+SQF+GPL+LNQLLQSMQ P+W GY YAFSIFVGVV GVLCEAQ
Sbjct: 301 GRFWWGGFCKIGNDISQFLGPLILNQLLQSMQNGDPSWTGYAYAFSIFVGVVFGVLCEAQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRSTLVAAVFRKSLR+THEARK FA+GKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 361 YFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQQICQSLHT 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRI++++VLLY +LGVASLLGAL+LV MFP+QTFIISRMQK +KEGLQRTDKRIG
Sbjct: 421 LWSAPFRIVVAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKFSKEGLQRTDKRIG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNEILAAMD VK YAWE+SFQSKVQ VRNDELSWFRKA L ACN+FILNSIPV VTV+
Sbjct: 481 LMNEILAAMDTVKYYAWESSFQSKVQIVRNDELSWFRKASLLGACNAFILNSIPVFVTVI 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
+FG+FTLLGGDLTPARAFTSLSLF+VLRFPLFMLPN ITQVVNANVSLKR+E+ LLAEE+
Sbjct: 541 TFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILL NPPL GLPAISI+NGYFSWD+KAER TL NINLDIPVG LVA+VG TGEGKTSL+
Sbjct: 601 ILLSNPPLEPGLPAISIKNGYFSWDTKAERATLSNINLDIPVGCLVAVVGSTGEGKTSLV 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELPP++D++ V+RGTVAYVPQVSWIFNATVRDN+LFGS F+P RYE+AI+VT LQ
Sbjct: 661 SAMLGELPPMADSTVVLRGTVAYVPQVSWIFNATVRDNVLFGSVFDPTRYERAINVTELQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHV RQVF
Sbjct: 721 HDLELLPGGDHTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D+CI+G+L KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE+LSN+G LFQKLMENA
Sbjct: 781 DKCIKGDLREKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNHGLLFQKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNK--TSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETG 898
GKMEEY EE++ ++ +S+P ANG ND K S K KEGKSVLIKQEERETG
Sbjct: 841 GKMEEYEEEEKVVTETTDQKPSSEPVANGSVNDHAKSGS---KPKEGKSVLIKQEERETG 897
Query: 899 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNT 958
VVS+ VL RYK+ALGG WVV +L CY TETLR+SSSTWLS+WTDQS+ K + P FYN
Sbjct: 898 VVSWNVLLRYKNALGGFWVVFVLFACYVSTETLRISSSTWLSHWTDQSATKGYNPAFYNM 957
Query: 959 IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFA 1018
IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH+AML SILRAPMVFF TNPLGR+INRFA
Sbjct: 958 IYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINRFA 1017
Query: 1019 KDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 1078
KDLGDIDRNVA FVNMF+GQVSQLLSTF+LIGIVSTMSLWAI+PLL+LFY AYLYYQSTA
Sbjct: 1018 KDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTA 1077
Query: 1079 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 1138
REVKRLDSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD NIR+TLVN+ NR
Sbjct: 1078 REVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNISGNR 1137
Query: 1139 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 1198
WLAIRLE +GGLMIWLTATFAV+QNG AENQ+ FASTMGLLLSYALNITSLLT VLRLAS
Sbjct: 1138 WLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLAS 1197
Query: 1199 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1258
LAENSLNAVER+G YI+LPSEAP +I+ NRPPPGWPSSGSI+FEDVVLRYR ELPPVLHG
Sbjct: 1198 LAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSGSIRFEDVVLRYRAELPPVLHG 1257
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
LSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILID +D+AKFGL DLRK+LGI
Sbjct: 1258 LSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDYDVAKFGLADLRKVLGI 1317
Query: 1319 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1378
IPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNSLGLDA+VSEAGENFSV
Sbjct: 1318 IPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377
Query: 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1438
GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII
Sbjct: 1378 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1437
Query: 1439 DCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLRE 1498
DCDRILLLD G+VLEYDTPEELLSNEGS+FSKMVQSTGAANAQYLRSL LGG+ RE
Sbjct: 1438 DCDRILLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGAANAQYLRSLALGGDKSE--RE 1495
Query: 1499 ENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQG 1558
EN+ +DG+R+WLASSRWAAAAQ+ALAVSLTSSHNDLQRLEVED+N+ILKKTKDA++TLQG
Sbjct: 1496 ENEHLDGKRKWLASSRWAAAAQFALAVSLTSSHNDLQRLEVEDENSILKKTKDALITLQG 1555
Query: 1559 VLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDW 1618
VLE K+DKEIEESLNQ +VS +GWWS+LY+MIEGL++MSRLA+NRLHQSD+ E+RSI++
Sbjct: 1556 VLERKYDKEIEESLNQRQVSPEGWWSSLYKMIEGLAMMSRLAKNRLHQSDFGFEDRSINF 1615
Query: 1619 DHVEM 1623
D V+M
Sbjct: 1616 DQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571320|ref|XP_002526609.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] gi|223534049|gb|EEF35768.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2709 bits (7023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1334/1568 (85%), Positives = 1465/1568 (93%), Gaps = 3/1568 (0%)
Query: 59 KDFKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIE 118
KD+KVQRFCLKSK YNYMLG LA Y TAEPLF+LIMGIS L++DGQ LAP+EI+SLIIE
Sbjct: 2 KDYKVQRFCLKSKWYNYMLGLLAVYATAEPLFRLIMGISLLNIDGQMSLAPYEIVSLIIE 61
Query: 119 ALCWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYM 178
AL WC ML+MI VETKVYIREFRWFVRFGVIYTLVGDAVM NLILSVK YNSSVLYLY+
Sbjct: 62 ALAWCFMLVMIGVETKVYIREFRWFVRFGVIYTLVGDAVMFNLILSVKELYNSSVLYLYI 121
Query: 179 SEVIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRI 238
SEV+VQ LFG+LLLVYVP+LDPYPGYTP+R E VDDAEY+ELPGGE +CPE+ ++FSR
Sbjct: 122 SEVLVQVLFGILLLVYVPDLDPYPGYTPIRVESVDDAEYQELPGGEIVCPEQHVSVFSRT 181
Query: 239 FFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSS 298
F+WMNP+M+ GY++ +TEKDVWKLD WD+TETLNN+FQKCWA+ES+RPKPWLLRALNSS
Sbjct: 182 IFAWMNPIMQLGYKRPLTEKDVWKLDIWDRTETLNNKFQKCWAEESRRPKPWLLRALNSS 241
Query: 299 LGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCE 358
LGGRFWWGGFWKIGND SQFVGPLLLNQLL+SMQ+ PAWIGYIYAFSIFVGVV GVLCE
Sbjct: 242 LGGRFWWGGFWKIGNDASQFVGPLLLNQLLKSMQEGDPAWIGYIYAFSIFVGVVFGVLCE 301
Query: 359 AQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQAL 418
AQYFQNVMRVG+RLRSTL+AAVFRKSLR+THE+R+ FASGKITNLMTTDAE LQQ+CQ+L
Sbjct: 302 AQYFQNVMRVGYRLRSTLIAAVFRKSLRLTHESRQKFASGKITNLMTTDAEALQQICQSL 361
Query: 419 HTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKR 478
HTLWSAPFRI+I+++LL+ +LGVASLLGAL+LV +FP+QTF+ISRMQKL+KEGLQRTDKR
Sbjct: 362 HTLWSAPFRIVIAMILLFQQLGVASLLGALMLVLLFPIQTFVISRMQKLSKEGLQRTDKR 421
Query: 479 IGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVT 538
IGLMNEILAAMD VKCYAWENSFQ KVQNVR+DELSWFRKA L ACN FILNSIPV+VT
Sbjct: 422 IGLMNEILAAMDTVKCYAWENSFQGKVQNVRDDELSWFRKASLLGACNGFILNSIPVVVT 481
Query: 539 VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAE 598
V+SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQ VNANVSLKR+EE LLAE
Sbjct: 482 VISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEELLLAE 541
Query: 599 EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 658
E+ILLPNPPL PAISI+NGYFSWDSKAE PTL NIN+DIP GSLVAIVG TGEGKTS
Sbjct: 542 ERILLPNPPLDPVQPAISIKNGYFSWDSKAEMPTLSNINVDIPTGSLVAIVGSTGEGKTS 601
Query: 659 LISAMLGELPPVSDA-SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 717
LISAMLGELP +SD SAVIRGTVAYVPQVSWIFNATVRDNILFGS F+ RYEKAIDVT
Sbjct: 602 LISAMLGELPAMSDTTSAVIRGTVAYVPQVSWIFNATVRDNILFGSTFDSTRYEKAIDVT 661
Query: 718 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 777
SLQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHV R
Sbjct: 662 SLQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVAR 721
Query: 778 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 837
QVFD+CI+GEL KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFE+LSNNG +FQKLM
Sbjct: 722 QVFDKCIKGELGRKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNNGMMFQKLM 781
Query: 838 ENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE 896
ENAGKMEEYVEEKE+GET D KTS KP ANGV ND K ++T+ KEGKSVLIK+EERE
Sbjct: 782 ENAGKMEEYVEEKENGETEDQKTSSKPVANGVANDFSKNVNETKNRKEGKSVLIKKEERE 841
Query: 897 TGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 956
TGVVS++VL RYK+ALGG WVV+IL +CY LTE LRVSSSTWLS WTD+ + K+HGPL+Y
Sbjct: 842 TGVVSWRVLMRYKNALGGAWVVMILFMCYILTEVLRVSSSTWLSNWTDRGTTKSHGPLYY 901
Query: 957 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 1016
N +YS+LS GQV+VTL NSYWLIISSLYAA+RLHDAML+SILRAPMVFFHTNPLGRIINR
Sbjct: 902 NLVYSILSVGQVMVTLLNSYWLIISSLYAARRLHDAMLNSILRAPMVFFHTNPLGRIINR 961
Query: 1017 FAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 1076
FAKDLGDIDR+VA+FVNMF+GQVSQLLSTF+LIGIVSTMSLW+IMPLL+LFY AYLYYQS
Sbjct: 962 FAKDLGDIDRSVAIFVNMFLGQVSQLLSTFILIGIVSTMSLWSIMPLLVLFYGAYLYYQS 1021
Query: 1077 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 1136
TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD NIR+TLVNM A
Sbjct: 1022 TAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMSA 1081
Query: 1137 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 1196
NRWLAIRLE +GG+MIWLTATFAV+QNG AENQ+AFASTMGLLLSYALNIT LLT VLRL
Sbjct: 1082 NRWLAIRLETLGGIMIWLTATFAVMQNGRAENQQAFASTMGLLLSYALNITGLLTGVLRL 1141
Query: 1197 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 1256
ASLAENSLNAVERVG YI+LPSEAP VIE NRPPPGWPSSGSIKFEDVVLRYRPELPPVL
Sbjct: 1142 ASLAENSLNAVERVGTYIDLPSEAPPVIEGNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 1201
Query: 1257 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316
HGLSFT+ PSDKVGIVGRTGAGKSSMLN LFRIVELERGRILIDG+DIAKFGLMDLRK+L
Sbjct: 1202 HGLSFTVSPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGYDIAKFGLMDLRKVL 1261
Query: 1317 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376
GIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNSLGL+A+VSEAGENF
Sbjct: 1262 GIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLNAEVSEAGENF 1321
Query: 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1436
SVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF+SCTMLIIAHRLNT
Sbjct: 1322 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFRSCTMLIIAHRLNT 1381
Query: 1437 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKL 1496
IIDCDRILLLDSG VLEYDTPEELLSNEGS+FSKMVQSTGAANAQYLR LVLGGE E++
Sbjct: 1382 IIDCDRILLLDSGEVLEYDTPEELLSNEGSAFSKMVQSTGAANAQYLRGLVLGGEGESRF 1441
Query: 1497 -REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVT 1555
REENK++DGQR+W+ASSRWAAAAQ+ALAVSLTSSHNDLQRLE++D+N+IL+KTKDAV+T
Sbjct: 1442 GREENKRLDGQRKWMASSRWAAAAQFALAVSLTSSHNDLQRLEIDDENSILEKTKDAVIT 1501
Query: 1556 LQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERS 1615
LQGVLEGKHDK IEESLNQH++S DGWWSALY+M+EGL++MSRL RNRLHQSDY ++RS
Sbjct: 1502 LQGVLEGKHDKVIEESLNQHQISKDGWWSALYKMVEGLAMMSRLGRNRLHQSDYGFDDRS 1561
Query: 1616 IDWDHVEM 1623
I+WD+VEM
Sbjct: 1562 INWDNVEM 1569
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|171854661|dbj|BAG16520.1| putative multidrug resistance-associated protein [Capsicum chinense] | Back alignment and taxonomy information |
|---|
Score = 2683 bits (6955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1305/1624 (80%), Positives = 1468/1624 (90%), Gaps = 8/1624 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M FKPLDWYC+PVANGVW+K V+NAFGAYTPC T++LV+SVSHLIL+ LC R+W KD
Sbjct: 1 MTFKPLDWYCQPVANGVWSKAVENAFGAYTPCGTNTLVISVSHLILLALCLNRVWKTMKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
VQRF L+S YNYMLG +AAYCT EPLF+ + +SAL++DGQ+GLAP+E +SL IE L
Sbjct: 61 LSVQRFRLRSNYYNYMLGLVAAYCTVEPLFRFVEQMSALNVDGQTGLAPYETISLTIEIL 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W SML+MI VETKVYIRE RW VRFGVIY LVGD VM+NLIL+V+ +YN SVLYLY+SE
Sbjct: 121 AWFSMLVMIVVETKVYIREARWSVRFGVIYCLVGDTVMLNLILTVRKYYNESVLYLYISE 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V VQ LFGLLLL Y+P++DPYPGY+P+R+E ++ YEELP EQICPER ANIFS+I F
Sbjct: 181 VAVQVLFGLLLLFYIPDMDPYPGYSPLRSEPFNNTAYEELPEAEQICPERHANIFSKITF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWMNPLM+ GY++ +T+KDVWKLDTWDQTETLNN FQK WA+ESQRPKPWLLRALN SLG
Sbjct: 241 SWMNPLMQLGYKRPLTDKDVWKLDTWDQTETLNNSFQKSWAEESQRPKPWLLRALNRSLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGND SQF+GPL+LNQLLQSMQ+ PAWIGYIYAF+IFVGVV GVLCEAQ
Sbjct: 301 GRFWWGGFWKIGNDASQFIGPLILNQLLQSMQRGDPAWIGYIYAFAIFVGVVFGVLCEAQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRSTL+AAVFRKSLR+THE+RKNFASGKITNLMTTD+E LQQ+CQ+LHT
Sbjct: 361 YFQNVMRVGYRLRSTLIAAVFRKSLRLTHESRKNFASGKITNLMTTDSEALQQICQSLHT 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAP RI ++LVLLY LGVA+LLGAL+LV MFP+QT++IS+MQKLTKEGLQRTDKRIG
Sbjct: 421 LWSAPLRITVALVLLYQLLGVAALLGALMLVLMFPIQTYVISKMQKLTKEGLQRTDKRIG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNE+LAAMD VK YAWENSFQSKVQ VRN+ELSW+RK+Q L A NSFILNSIPV+V V+
Sbjct: 481 LMNEVLAAMDTVKSYAWENSFQSKVQGVRNEELSWYRKSQLLGALNSFILNSIPVVVIVI 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+F+LLGGDLTPARAFT+LSLFAVLRFPLFMLPN+ITQVVNANVSLKR+E+ LLAEE+
Sbjct: 541 SFGVFSLLGGDLTPARAFTALSLFAVLRFPLFMLPNIITQVVNANVSLKRLEDLLLAEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILLPNPPL GLPAISI+NG FSW+SKAE+PTL NINLDIP+GSLVAIVGGTGEGKTSLI
Sbjct: 601 ILLPNPPLEPGLPAISIKNGCFSWESKAEKPTLSNINLDIPIGSLVAIVGGTGEGKTSLI 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELP SD+ VIRGTVAYVPQVSWIFNATVR+NILFGSA + ARY +AIDVT+L+
Sbjct: 661 SAMLGELPSFSDSVVVIRGTVAYVPQVSWIFNATVRENILFGSAIDAARYNRAIDVTALR 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV IFDDPLSALDA VGRQVF
Sbjct: 721 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCIFDDPLSALDADVGRQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
+RCIR EL GKTRVLVTNQLHFLSQVD+IILVH+GMVKEEGTFE LSNNG LFQKLMENA
Sbjct: 781 ERCIREELKGKTRVLVTNQLHFLSQVDKIILVHDGMVKEEGTFEYLSNNGVLFQKLMENA 840
Query: 841 GKMEEYVEEKE-DGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGV 899
GKMEEY EEKE DG ++K+SKP NG N + KE + KEGKSVLIKQEERETGV
Sbjct: 841 GKMEEYTEEKENDG---NDKSSKPVVNGEANGVAKEVG--KDKKEGKSVLIKQEERETGV 895
Query: 900 VSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI 959
VS+ VL RYK+ALGG WVV+IL +CYFL E LRV SSTWLS+WTDQSS + FYN I
Sbjct: 896 VSWNVLMRYKNALGGSWVVIILFVCYFLIEALRVGSSTWLSFWTDQSSSTRYSAGFYNLI 955
Query: 960 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 1019
YSLLS GQV+VTL NS+WLI SSLYAAK LHDAML SILRAPMVFFHTNPLGRIINRFAK
Sbjct: 956 YSLLSLGQVMVTLMNSFWLITSSLYAAKMLHDAMLGSILRAPMVFFHTNPLGRIINRFAK 1015
Query: 1020 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAR 1079
DLGDIDRNVA FV+MF+GQV QL+STFVLIGIVSTMSLWAIMPLL+LFY AYLYYQSTAR
Sbjct: 1016 DLGDIDRNVAPFVSMFLGQVFQLISTFVLIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAR 1075
Query: 1080 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 1139
EVKRLDSI+RSPVYAQFGEALNGL+TIRAYKAYDRMA+INGKS+D NIR+TLVNM NRW
Sbjct: 1076 EVKRLDSISRSPVYAQFGEALNGLATIRAYKAYDRMANINGKSVDNNIRFTLVNMSGNRW 1135
Query: 1140 LAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASL 1199
LAIRLE VGG+MIWLTATFAVVQNG AENQ+AFASTMGLLLSYALNITSLLTAVLRLASL
Sbjct: 1136 LAIRLETVGGVMIWLTATFAVVQNGRAENQQAFASTMGLLLSYALNITSLLTAVLRLASL 1195
Query: 1200 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGL 1259
AENSLNAVERVG YIELPSE P +IE +RPPPGWPS+GSI+FE+VVLRYRPELPPVLHG+
Sbjct: 1196 AENSLNAVERVGTYIELPSEGPSIIEGSRPPPGWPSAGSIRFENVVLRYRPELPPVLHGI 1255
Query: 1260 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319
SFTI PSDKVG+VGRTGAGKSSM N LFR+VE ERGRILID D++KFGL DLRK+LGII
Sbjct: 1256 SFTISPSDKVGVVGRTGAGKSSMFNALFRLVEPERGRILIDDCDVSKFGLTDLRKVLGII 1315
Query: 1320 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1379
PQ+PVLFSGTVRFNLDPF+EH+DADLWE+LERAHLKD IRRNSLGLDA+VSEAGENFSVG
Sbjct: 1316 PQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVG 1375
Query: 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1439
QRQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID
Sbjct: 1376 QRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1435
Query: 1440 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREE 1499
CDRILLL+SG++LEYDTPE LL EGS+FS+MVQSTGAANAQYLRSLV GGE N +
Sbjct: 1436 CDRILLLESGQLLEYDTPEVLLQKEGSAFSRMVQSTGAANAQYLRSLVFGGEEGNSI-AR 1494
Query: 1500 NKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGV 1559
+KQ+DGQRRWLAS+RWAAAAQ+ALAV+LTSS NDL +LE+ED++NILKKTK+AV+TLQGV
Sbjct: 1495 DKQLDGQRRWLASTRWAAAAQFALAVTLTSSQNDLVQLEIEDEDNILKKTKNAVITLQGV 1554
Query: 1560 LEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWD 1619
LEGKHDK+IEE+L+Q++VS D WWS+LY+MIEGL++MS+LARNRL Q++++ ++++I+WD
Sbjct: 1555 LEGKHDKDIEETLDQYQVSRDRWWSSLYKMIEGLAMMSKLARNRL-QAEFEFDDKTINWD 1613
Query: 1620 HVEM 1623
EM
Sbjct: 1614 RAEM 1617
|
Source: Capsicum chinense Species: Capsicum chinense Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447229|ref|XP_003593890.1| ABC transporter C family member [Medicago truncatula] gi|355482938|gb|AES64141.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2640 bits (6842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1329/1717 (77%), Positives = 1479/1717 (86%), Gaps = 99/1717 (5%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
MAF PL WYC+PV NGVWT+ V NAFGAYTPCA DSLV+ +SHL+++GLC YRIWLI+KD
Sbjct: 1 MAFDPLVWYCQPVENGVWTRTVQNAFGAYTPCAVDSLVIGISHLVILGLCIYRIWLIQKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
F V+RF L+S +YNY+LG LAAYC AEPL++LIMG+S L+LDGQS LAPFEI SLIIEAL
Sbjct: 61 FSVKRFRLRSNVYNYVLGVLAAYCVAEPLYRLIMGVSVLNLDGQSQLAPFEITSLIIEAL 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNS--------- 171
WCSMLI++ +ETKVYI EFRWFVRFG+IY VG AV+ N I+SV+ Y+
Sbjct: 121 AWCSMLILLGIETKVYIYEFRWFVRFGLIYAAVGGAVLFNFIISVQELYSRFGHITFVML 180
Query: 172 --------SVLYLYMSEVIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGG 223
SVLYLY+SEV+ Q LFG+LLLVYVP LDPYPGYTP+ +E+V+DA Y+ELP G
Sbjct: 181 CGLLAITVSVLYLYISEVVCQVLFGILLLVYVPTLDPYPGYTPIASEIVNDAAYDELPEG 240
Query: 224 EQICPERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKE 283
E ICPER+A ++S++ FSWMNP+MK GYE+ +TEKD+WKLDTW++TE L N+FQKCWA+E
Sbjct: 241 ELICPERRAGLWSKMVFSWMNPIMKLGYERPLTEKDIWKLDTWERTEALQNKFQKCWAEE 300
Query: 284 SQRPKPWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIY 343
SQ+ KPWLLRALN+SLGGRFW+GG +KIGNDLSQF GPL+LNQLLQSMQ PA +GYIY
Sbjct: 301 SQKSKPWLLRALNASLGGRFWFGGIFKIGNDLSQFTGPLILNQLLQSMQNGDPAGMGYIY 360
Query: 344 AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLV-------------------------- 377
AF+IFVGVV GVL EAQYFQNVMRVG+RLRSTLV
Sbjct: 361 AFAIFVGVVFGVLSEAQYFQNVMRVGYRLRSTLVILSSVQTMRQELPKASLLEQGSKSSI 420
Query: 378 ---AAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVL 434
AAVFRKSLR+THEARK FASGKITNLMTTDAE LQQ+CQ+LHTLWSAPFRI I++VL
Sbjct: 421 FEVAAVFRKSLRLTHEARKQFASGKITNLMTTDAESLQQICQSLHTLWSAPFRITIAMVL 480
Query: 435 LYNELGVASLLGALLLVFMFPVQ------------------------------------- 457
LY ELGVASLLGALLLV MFP+Q
Sbjct: 481 LYQELGVASLLGALLLVLMFPLQVHTFTFILPPSHNISKKNTFSLSQNISKKDKLLSFPR 540
Query: 458 ----------TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQN 507
T IISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWE+SFQS+V N
Sbjct: 541 FFLFILIKLNTVIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSRVVN 600
Query: 508 VRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVL 567
VRNDELSWFRKA L ACNSFILNSIPV VTV+SFG+FTLLGGDLTPARAFTSLSLFAVL
Sbjct: 601 VRNDELSWFRKASLLGACNSFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVL 660
Query: 568 RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSK 627
RFPLFMLPN+ITQVVNANVSLKR+EE LLAEE+ILLPNPPL GLPAISIRNGYFSWD+K
Sbjct: 661 RFPLFMLPNIITQVVNANVSLKRLEELLLAEERILLPNPPLEPGLPAISIRNGYFSWDAK 720
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 687
AER TL NINLDIPVGSLVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQV
Sbjct: 721 AERATLSNINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPPIADSTVVLRGTVAYVPQV 780
Query: 688 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747
SWIFNATVRDN+LFGS F+P RYE+AI+VT L+HDL+LLPGGD+TEIGERGVNISGGQKQ
Sbjct: 781 SWIFNATVRDNVLFGSVFDPIRYERAINVTELRHDLELLPGGDLTEIGERGVNISGGQKQ 840
Query: 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 807
RVSMARAVYSNSDV +FDDPLSALDAHV RQVFD+CI+GEL GKTRVLVTNQLHFLSQVD
Sbjct: 841 RVSMARAVYSNSDVLVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVD 900
Query: 808 RIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAAN 866
RIILVHEGMVKEEGTFE+LS+ G LFQKLMENAGKMEEY EEK D E D K+S KP N
Sbjct: 901 RIILVHEGMVKEEGTFEELSSQGLLFQKLMENAGKMEEYEEEKVDIEATDQKSSSKPVVN 960
Query: 867 GVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYF 926
G ND K S K K GKS+LIKQEERETGVVS VL RYK+ALGG WV+L+L CYF
Sbjct: 961 GAVNDNAKSES---KPKGGKSILIKQEERETGVVSLNVLIRYKNALGGTWVILVLFACYF 1017
Query: 927 LTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 986
TE LRVSSSTWLS+WTDQS++ + P FYN +Y+ LSFGQV V+L NSYWLIISSLYAA
Sbjct: 1018 STEALRVSSSTWLSHWTDQSAVDGYNPAFYNLVYAALSFGQVFVSLINSYWLIISSLYAA 1077
Query: 987 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 1046
+RLH+AMLHSILRAPMVFFHTNPLGR+INRFAKDLGDIDRNVA FV+MF+GQ+SQLLSTF
Sbjct: 1078 RRLHEAMLHSILRAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVSMFLGQISQLLSTF 1137
Query: 1047 VLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTI 1106
+LIGIVSTMSLWAIMPLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTI
Sbjct: 1138 ILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTI 1197
Query: 1107 RAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSA 1166
RAYKAYDRMADING+SMD NIRYTLVN+ ANRWLAIRLE +GGLMIW TATFAV+QNG A
Sbjct: 1198 RAYKAYDRMADINGRSMDNNIRYTLVNISANRWLAIRLETLGGLMIWFTATFAVMQNGRA 1257
Query: 1167 ENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 1226
ENQ+ FASTMGLLLSYALNITSLLT VLRLASLAENSLN+VERVG YI+LPSEAP VI+
Sbjct: 1258 ENQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGTYIDLPSEAPSVIDD 1317
Query: 1227 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 1286
NRPPPGWPSSGSIKF++VVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN L
Sbjct: 1318 NRPPPGWPSSGSIKFDEVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNAL 1377
Query: 1287 FRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW 1346
FRIVELE+GRILID DIAKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLW
Sbjct: 1378 FRIVELEKGRILIDDRDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLW 1437
Query: 1347 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 1406
EALERAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAV
Sbjct: 1438 EALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1497
Query: 1407 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1466
DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR+LLLD G+VLEY+TPEELLSNEGS
Sbjct: 1498 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDGGKVLEYNTPEELLSNEGS 1557
Query: 1467 SFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVS 1526
+FSKMVQSTGAANAQYLRSLV GG+ REEN+ +DGQR+WLASSRWAAAAQYALAVS
Sbjct: 1558 AFSKMVQSTGAANAQYLRSLVHGGDKTE--REENQHLDGQRKWLASSRWAAAAQYALAVS 1615
Query: 1527 LTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSAL 1586
LTSS NDLQRLEVED+N+ILKKTKDA++TLQGVLE KHDKEIEESLNQ ++S++GWWS+L
Sbjct: 1616 LTSSQNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLNQRQISSEGWWSSL 1675
Query: 1587 YRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1623
Y+MIEGL++MSRLARNRLHQSD+ E+ SI++D ++M
Sbjct: 1676 YKMIEGLAMMSRLARNRLHQSDFGFEDTSINFDQIDM 1712
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443998|ref|XP_002281070.1| PREDICTED: ABC transporter C family member 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2620 bits (6790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1271/1624 (78%), Positives = 1437/1624 (88%), Gaps = 1/1624 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
MAF+PL WYC+PVANGVW K ++AFG YTPCA DS+VV +SHL+L+GLC YRIWLIK D
Sbjct: 1 MAFEPLVWYCQPVANGVWAKAAESAFGPYTPCAVDSIVVCISHLVLLGLCCYRIWLIKMD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
FKVQRFCL+S YNYMLG LA YCTAEPLF+L+MG+S DLD Q+GLAP+EI+SLIIEA
Sbjct: 61 FKVQRFCLQSNYYNYMLGLLACYCTAEPLFRLVMGVSIFDLDEQTGLAPYEIVSLIIEAA 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
WCSML+MI VETK+YIR+FRW+VRFGVIY LVGDAVM+NLILS+K+ Y+ SVLY +S
Sbjct: 121 TWCSMLVMIGVETKIYIRQFRWYVRFGVIYLLVGDAVMLNLILSLKDSYSRSVLYPPISS 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V+ Q LFG+ LLV+VP L+PY GYTPM+++ +++ +YE LPGG+QICPE+ AN+FSRI+F
Sbjct: 181 VLCQVLFGICLLVHVPNLNPYVGYTPMQSDSLENTKYEVLPGGDQICPEKHANMFSRIYF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
WM PLM++GY+K ITEKD+WKLDTWDQTETL+ +FQKCW +ESQR KP LLRALN SLG
Sbjct: 241 GWMTPLMQQGYKKPITEKDIWKLDTWDQTETLSRRFQKCWIEESQRSKPRLLRALNCSLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFW GGF+KIGNDLSQFVGP+LLN LLQSMQ+ PAWIGYIYAFSIF+GV LGVLCEAQ
Sbjct: 301 GRFWRGGFFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFSIFIGVSLGVLCEAQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVGFRLRSTLVAA+FRKSLR+THE RKNF SGKITN+MTTDA LQQ+CQ LH
Sbjct: 361 YFQNVMRVGFRLRSTLVAAIFRKSLRLTHEGRKNFPSGKITNMMTTDANALQQICQQLHA 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRIII++VLLY +LGVASLLG+L+L+ M P+QTFIIS+M+KL+KEGLQRTDKR+
Sbjct: 421 LWSAPFRIIIAMVLLYQQLGVASLLGSLMLLLMLPIQTFIISKMRKLSKEGLQRTDKRVS 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNEILAAMD VKCYAWE SFQSKVQ++RNDELSWFRKAQ L+ACNSFILNSIPV+VTV
Sbjct: 481 LMNEILAAMDTVKCYAWEKSFQSKVQSMRNDELSWFRKAQLLSACNSFILNSIPVIVTVT 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG FTLLGGDLTPARAFTSLSLFAVLRFPL MLPN+ITQVV A+VS++R+E+ L EE+
Sbjct: 541 SFGAFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLITQVVTAHVSIQRLEQLFLTEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
+L PNP L GLPAISI++GYFSWDSK E+PTL NINLDIPVGSLVA+VGGTGEGKTSLI
Sbjct: 601 VLAPNPTLEPGLPAISIKDGYFSWDSKVEKPTLSNINLDIPVGSLVAVVGGTGEGKTSLI 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELPP+SDAS VIRGTVAYVPQ+SWIFNATVR NILFGS FEPARY KAIDVT LQ
Sbjct: 661 SAMLGELPPLSDASVVIRGTVAYVPQISWIFNATVRGNILFGSDFEPARYWKAIDVTELQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDLLPG D+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHV +QVF
Sbjct: 721 HDLDLLPGHDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVAQQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
CI+ EL GKTRVLVTNQLHFL VDRIILV +G VKE+GTF+DLS N +LFQKLMENA
Sbjct: 781 SNCIKEELKGKTRVLVTNQLHFLPHVDRIILVSDGTVKEDGTFDDLSKNSKLFQKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKMEE VEE E E + N SKP NG N+LPK A + K KEGKSVLIKQEERETG+V
Sbjct: 841 GKMEEQVEENECRENLSNNKSKPTTNGEVNELPKNAIHSNKGKEGKSVLIKQEERETGIV 900
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+KVL RYKDALGGLWVV +L CY LTE LRV SSTWLS WTDQS K + P +YN IY
Sbjct: 901 SWKVLMRYKDALGGLWVVTLLFACYVLTEVLRVLSSTWLSVWTDQSMSKDYRPGYYNLIY 960
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LLSFGQV+VTL NS+WLI SSL+AAK LH+ ML+SILRAPMVFFHTNP+GRIINRFAKD
Sbjct: 961 ALLSFGQVMVTLGNSFWLITSSLHAAKILHNVMLNSILRAPMVFFHTNPIGRIINRFAKD 1020
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
LGDIDRNVA NMF+GQV QLLSTFVLI IVST+SLWAIMPLL+LFYAAYLYYQST+RE
Sbjct: 1021 LGDIDRNVAPSANMFLGQVWQLLSTFVLIAIVSTISLWAIMPLLILFYAAYLYYQSTSRE 1080
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA INGKSMD NIR+TL N+ +NRWL
Sbjct: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMASINGKSMDNNIRFTLANISSNRWL 1140
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
IRLE +GGLMI LTATFAV++N EN AFASTMGLLLSY LNITSLL+ VLR AS A
Sbjct: 1141 TIRLETLGGLMICLTATFAVMENSREENPAAFASTMGLLLSYTLNITSLLSGVLRQASRA 1200
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENS NAVERVG Y++LPSEAP +IESNRPPPGWPSSGSI+FEDVVLRYRPELPPVLHG+S
Sbjct: 1201 ENSFNAVERVGTYVDLPSEAPTIIESNRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGIS 1260
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F I PS+K+GIVGRTGAGKSSM+N LFRIVELERGRI ID +DIAKFGL DLRK+L IIP
Sbjct: 1261 FKISPSEKLGIVGRTGAGKSSMINALFRIVELERGRIWIDEYDIAKFGLTDLRKVLSIIP 1320
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
QSPVLFSGTVRFNLDPF+EH+DADLWEALERAHLKD IRRNS GLDA+V+E GENFSVGQ
Sbjct: 1321 QSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSFGLDAEVAEGGENFSVGQ 1380
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK+CTML+IAHRLNTIIDC
Sbjct: 1381 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKTCTMLVIAHRLNTIIDC 1440
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKL-REE 1499
DRIL+LD+G+V+EYDTPEELL +EGSSFS+MV+STGAANAQYLRSLV G + + K REE
Sbjct: 1441 DRILVLDAGQVVEYDTPEELLQDEGSSFSRMVRSTGAANAQYLRSLVFGEDGQKKSGREE 1500
Query: 1500 NKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGV 1559
KQ+D Q+RWLASSRWAAA Q+AL++SLTSS N LQ L+VED+ NILKKT DAV+TL+GV
Sbjct: 1501 AKQLDRQKRWLASSRWAAATQFALSISLTSSQNGLQFLDVEDEMNILKKTNDAVLTLRGV 1560
Query: 1560 LEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWD 1619
LEG HD+ IEE L +++V D WWSALY+M+EGL+VM+RLAR+R QS++D E+ ++DWD
Sbjct: 1561 LEGTHDEVIEEMLKEYQVPRDRWWSALYKMVEGLAVMNRLARHRFQQSEHDFEDTTLDWD 1620
Query: 1620 HVEM 1623
EM
Sbjct: 1621 LTEM 1624
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823253|ref|XP_002879509.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297325348|gb|EFH55768.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2612 bits (6770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1287/1628 (79%), Positives = 1448/1628 (88%), Gaps = 10/1628 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ +WYC+PV NGVWTK V NAFGAYTPCATDS V+ +S L+L+ LC YRIWL KD
Sbjct: 1 MGFEFFEWYCKPVPNGVWTKQVANAFGAYTPCATDSFVLGISQLVLLVLCLYRIWLTMKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
KV+RFCL+SKLYNY L LAAY TAEPLF+LIMGIS LDLDG GL PFE L ++A
Sbjct: 61 HKVERFCLRSKLYNYFLALLAAYATAEPLFRLIMGISVLDLDG-PGLPPFEAFGLGVKAF 119
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W S ++MIF+ETK+YIRE RW+VRF VIY LVG V++NL+LSVK FY+S VLYLY SE
Sbjct: 120 AWGSAMVMIFMETKIYIRELRWYVRFAVIYALVGHLVLLNLVLSVKEFYSSYVLYLYTSE 179
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V Q LFG+LL +++P LDPYPGY P+R+E +DD EYEE+ G+QICPE+ ANIF +IFF
Sbjct: 180 VAAQVLFGILLFMHLPNLDPYPGYMPVRSETMDDYEYEEISDGQQICPEKHANIFDKIFF 239
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWMNPLM G ++ +TEKDVW LDTWDQTETL FQ+ W KE Q+P+PWLLRALN+SLG
Sbjct: 240 SWMNPLMTLGSKRPLTEKDVWYLDTWDQTETLFTSFQQSWDKELQKPQPWLLRALNNSLG 299
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGND SQFVGPLLLNQLL+SMQ+D PAW+GYIYAFSIFVGVVLGVLCEAQ
Sbjct: 300 GRFWWGGFWKIGNDCSQFVGPLLLNQLLKSMQEDEPAWMGYIYAFSIFVGVVLGVLCEAQ 359
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRS L+AAVFRKSLR+T+E R+ F +GKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 360 YFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRRKFQTGKITNLMTTDAESLQQICQSLHT 419
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
+WSAPFRII++LVLLY +LGVASL+GALLLV MFP+QT IIS+MQKLTKEGLQRTDKRIG
Sbjct: 420 MWSAPFRIIVALVLLYQQLGVASLIGALLLVLMFPLQTVIISKMQKLTKEGLQRTDKRIG 479
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNE+LAAMD VKCYAWENSFQSKVQ VR+DELSWFRK+Q L A N FILNSIPVLVT+V
Sbjct: 480 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKSQLLGALNMFILNSIPVLVTIV 539
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQVVNANVSLKR+EE L EE+
Sbjct: 540 SFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEEVLATEER 599
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD+P+GSLVA+VG TGEGKTSLI
Sbjct: 600 ILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSLVAVVGSTGEGKTSLI 659
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SA+LGELP SDA +RG+VAYVPQVSWIFNATVR+NILFGS F+ +YE+ IDVTSL+
Sbjct: 660 SAILGELPATSDAMVTLRGSVAYVPQVSWIFNATVRENILFGSPFDREKYERVIDVTSLK 719
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYS+SDV+IFDDPLSALDAHVG+QVF
Sbjct: 720 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSDSDVYIFDDPLSALDAHVGQQVF 779
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
++CI+ EL+ KTRVLVTNQLHFLSQVDRI+LVHEG VKEEGT+E+LSNNG LFQ+LMENA
Sbjct: 780 EKCIKRELAQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEELSNNGPLFQRLMENA 839
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKE-----GKSVLIKQEER 895
GK+EEY EE + E D +P ANG N L + SD +K+KE GKSVLIKQEER
Sbjct: 840 GKVEEYSEENGEAEA-DQAVVQPVANGNTNGLQMDGSDDKKSKEGNKKGGKSVLIKQEER 898
Query: 896 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF 955
ETGVVS++VL RY+DALGG WVV++LLLCY LTE RV+SSTWLS WTD + K+HGPLF
Sbjct: 899 ETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLSEWTDAGTPKSHGPLF 958
Query: 956 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIIN 1015
YN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD MLHSILRAPM FFHTNPLGRIIN
Sbjct: 959 YNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRAPMSFFHTNPLGRIIN 1018
Query: 1016 RFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 1075
RFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST+SLWAIMPLL+LFY AYLYYQ
Sbjct: 1019 RFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAIMPLLVLFYGAYLYYQ 1078
Query: 1076 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 1135
+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD NIR+TLVNMG
Sbjct: 1079 NTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMG 1138
Query: 1136 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLR 1195
ANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFASTMGLLLSYALNITSLLT VLR
Sbjct: 1139 ANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLLSYALNITSLLTGVLR 1198
Query: 1196 LASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV 1255
LASLAENSLNAVERVGNYIE+P EAPLVIE+NRPPPGWPSSGSIKFEDVVLRYRP+LPPV
Sbjct: 1199 LASLAENSLNAVERVGNYIEIPPEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPQLPPV 1258
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315
LHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+GRILID D+ KFGLMDLRK+
Sbjct: 1259 LHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKGRILIDECDVGKFGLMDLRKV 1318
Query: 1316 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375
LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHLKD IRRN LGLDA+VSEAGEN
Sbjct: 1319 LGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRRNPLGLDAEVSEAGEN 1378
Query: 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1435
FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN
Sbjct: 1379 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1438
Query: 1436 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENK 1495
TIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQSTGAANA+YLRSLVL + +
Sbjct: 1439 TIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQSTGAANAEYLRSLVLDNK---R 1495
Query: 1496 LREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVT 1555
R++++ + GQR+WLASSRWAAAAQ+ALAVSLTSSHNDLQ LE+ED ++ILK+T DAVVT
Sbjct: 1496 ARDDSQHLQGQRKWLASSRWAAAAQFALAVSLTSSHNDLQSLEIEDDSSILKRTNDAVVT 1555
Query: 1556 LQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERS 1615
L+ VLEGKHDKEI ESL + +S +GW S+LYRM+EGL+VMSRLARNR+ Q DY+ E +
Sbjct: 1556 LRSVLEGKHDKEIAESLEERNISKEGWLSSLYRMVEGLAVMSRLARNRMQQPDYNFEGNT 1615
Query: 1616 IDWDHVEM 1623
DWD+VEM
Sbjct: 1616 FDWDNVEM 1623
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1623 | ||||||
| TAIR|locus:2061559 | 1623 | ABCC2 "ATP-binding cassette C2 | 0.996 | 0.996 | 0.741 | 0.0 | |
| TAIR|locus:2204202 | 1622 | ABCC1 "ATP-binding cassette C1 | 0.998 | 0.999 | 0.726 | 0.0 | |
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.913 | 0.991 | 0.663 | 0.0 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.360 | 0.373 | 0.443 | 9.8e-254 | |
| UNIPROTKB|Q28689 | 1564 | ABCC2 "Canalicular multispecif | 0.417 | 0.433 | 0.393 | 4.8e-240 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.369 | 0.388 | 0.415 | 7e-239 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.398 | 0.406 | 0.379 | 1e-237 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.361 | 0.379 | 0.423 | 5.6e-237 | |
| UNIPROTKB|F1S8V9 | 1544 | ABCC2 "Uncharacterized protein | 0.406 | 0.427 | 0.384 | 9.1e-237 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.359 | 0.377 | 0.413 | 8.1e-236 |
| TAIR|locus:2061559 ABCC2 "ATP-binding cassette C2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6265 (2210.4 bits), Expect = 0., P = 0.
Identities = 1207/1628 (74%), Positives = 1361/1628 (83%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ ++WYC+PV NGVWTK V NAFGAYTPCATDS V+ +S L+L+ LC YRIWL KD
Sbjct: 1 MGFEFIEWYCKPVPNGVWTKQVANAFGAYTPCATDSFVLGISQLVLLVLCLYRIWLALKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
KV+RFCL+S+LYNY L LAAY TAEPLF+LIMGIS LD DG GL PFE L ++A
Sbjct: 61 HKVERFCLRSRLYNYFLALLAAYATAEPLFRLIMGISVLDFDGP-GLPPFEAFGLGVKAF 119
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W ++++MI +ETK+YIRE RW+VRF VIY LVGD V++NL+LSVK +Y+S VLYLY SE
Sbjct: 120 AWGAVMVMILMETKIYIRELRWYVRFAVIYALVGDMVLLNLVLSVKEYYSSYVLYLYTSE 179
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V Q LFG+LL +++P LD YPGY P+R+E VDD EYEE+ G+QICPE+ ANIF +IFF
Sbjct: 180 VGAQVLFGILLFMHLPNLDTYPGYMPVRSETVDDYEYEEISDGQQICPEKHANIFDKIFF 239
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWMNPLM G ++ +TEKDVW LDTWDQTETL FQ W KE Q+P+PWLLRALN+SLG
Sbjct: 240 SWMNPLMTLGSKRPLTEKDVWYLDTWDQTETLFTSFQHSWDKELQKPQPWLLRALNNSLG 299
Query: 301 GRFWWGGFWKIGNDLSXXXXXXXXXXXXXXXXXDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGND S D PAW+GYIYAFSIFVGVV GVLCEAQ
Sbjct: 300 GRFWWGGFWKIGNDCSQFVGPLLLNQLLKSMQEDAPAWMGYIYAFSIFVGVVFGVLCEAQ 359
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRS L+AAVFRKSLR+T+E R+ F +GKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 360 YFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRRKFQTGKITNLMTTDAESLQQICQSLHT 419
Query: 421 LWSAPFRIIISLVLLYNEXXXXXXXXXXXXXFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
+WSAPFRIII+L+LLY + MFP+QT IIS+MQKLTKEGLQRTDKRIG
Sbjct: 420 MWSAPFRIIIALILLYQQLGVASLIGALLLVLMFPLQTVIISKMQKLTKEGLQRTDKRIG 479
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNE+LAAMD VKCYAWENSFQSKVQ VR+DELSWFRK+Q L A N FILNSIPVLVT+V
Sbjct: 480 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKSQLLGALNMFILNSIPVLVTIV 539
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQVVNANVSLKR+EE L EE+
Sbjct: 540 SFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEEVLATEER 599
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
ILLPNPP+ G PAISIRNGYFSWDSK +RPTL NINLD+P+GSLVA+VG TGEGKTSLI
Sbjct: 600 ILLPNPPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSLVAVVGSTGEGKTSLI 659
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SA+LGELP SDA +RG+VAYVPQVSWIFNATVRDNILFGS F+ +YE+AIDVTSL+
Sbjct: 660 SAILGELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNILFGSPFDREKYERAIDVTSLK 719
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHVG+QVF
Sbjct: 720 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGQQVF 779
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
++CI+ EL KTRVLVTNQLHFLSQVDRI+LVHEG VKEEGT+E+LS+NG LFQ+LMENA
Sbjct: 780 EKCIKRELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEELSSNGPLFQRLMENA 839
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEG-----KSVLIKQEER 895
GK+EEY EE + E D +P ANG N L + SD +K+KEG KSVLIKQEER
Sbjct: 840 GKVEEYSEENGEAEA-DQTAEQPVANGNTNGLQMDGSDDKKSKEGNKKGGKSVLIKQEER 898
Query: 896 ETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF 955
ETGVVS++VL RY+DA CY LTE RV+SSTWLS WTD + K+HGPLF
Sbjct: 899 ETGVVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLSEWTDAGTPKSHGPLF 958
Query: 956 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIIN 1015
YN IY+LLSFGQVLVTL NSYWLI+SSLYAAK+LHD MLHSILRAPM FFHTNPLGRIIN
Sbjct: 959 YNLIYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRAPMSFFHTNPLGRIIN 1018
Query: 1016 RFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQ 1075
RFAKDLGDIDR VAVFVNMFMGQVSQLLST VLIGIVST+SLWAIMP Q
Sbjct: 1019 RFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAIMPLLVLFYGAYLYYQ 1078
Query: 1076 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 1135
+TAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKAYDRMADING+SMD NIR+TLVNMG
Sbjct: 1079 NTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMG 1138
Query: 1136 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLR 1195
ANRWL IRLE +GGLMIWLTA+FAV+QNG AENQ+AFASTMGLLLSYALNITSLLT VLR
Sbjct: 1139 ANRWLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLLSYALNITSLLTGVLR 1198
Query: 1196 LASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV 1255
LASLAENSLNAVERVGNYIE+P EAP VIE+NRPPPGWPSSGSIKFEDVVLRYRP+LPPV
Sbjct: 1199 LASLAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWPSSGSIKFEDVVLRYRPQLPPV 1258
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315
LHG+SF I P+DKVGIVGRTGAGKSS+LN LFRIVE+E+GRILID D+ KFGLMDLRK+
Sbjct: 1259 LHGVSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKGRILIDDCDVGKFGLMDLRKV 1318
Query: 1316 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375
LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE+LERAHLKD IRRN LGLDA+VSEAGEN
Sbjct: 1319 LGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRRNPLGLDAEVSEAGEN 1378
Query: 1376 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1435
FSVGQRQ KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN
Sbjct: 1379 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1438
Query: 1436 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENK 1495
TIIDCD+IL+LDSGRV E+ +PE LLSNEGSSFSKMVQSTGAANA+YLRSLVL + +
Sbjct: 1439 TIIDCDKILVLDSGRVQEFSSPENLLSNEGSSFSKMVQSTGAANAEYLRSLVLDNK---R 1495
Query: 1496 LREENKQIDGXXXXXXXXXXXXXXXXXXXVSLTSSHNDLQRLEVEDQNNILKKTKDAVVT 1555
++++ + G SLTSSHNDLQ LE+ED ++ILK+T DAVVT
Sbjct: 1496 AKDDSHHLQGQRKWLASSRWAAAAQFALAASLTSSHNDLQSLEIEDDSSILKRTNDAVVT 1555
Query: 1556 LQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERS 1615
L+ VLEGKHDKEI ESL +H +S +GW S+LYRM+EGL+VMSRLARNR+ Q DY+ E +
Sbjct: 1556 LRSVLEGKHDKEIAESLEEHNISREGWLSSLYRMVEGLAVMSRLARNRMQQPDYNFEGNT 1615
Query: 1616 IDWDHVEM 1623
DWD+VEM
Sbjct: 1616 FDWDNVEM 1623
|
|
| TAIR|locus:2204202 ABCC1 "ATP-binding cassette C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6175 (2178.8 bits), Expect = 0., P = 0.
Identities = 1180/1624 (72%), Positives = 1349/1624 (83%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+PLDWYC+PV NGVWTK VD AFGAYTPCA DS V+ +SHL+L+ LC YR+WLI KD
Sbjct: 1 MGFEPLDWYCKPVPNGVWTKTVDYAFGAYTPCAIDSFVLGISHLVLLILCLYRLWLITKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
KV +FCL+SK ++Y L LAAY TAEPLF+L+M IS LDLDG +G P+E L++EA
Sbjct: 61 HKVDKFCLRSKWFSYFLALLAAYATAEPLFRLVMRISVLDLDG-AGFPPYEAFMLVLEAF 119
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W S L+M VETK YI E RW+VRF VIY LVGD V++NL+LSVK +Y S LYLY+SE
Sbjct: 120 AWGSALVMTVVETKTYIHELRWYVRFAVIYALVGDMVLLNLVLSVKEYYGSFKLYLYISE 179
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V VQ FG LL VY P LDPYPGYTP+ TE +D EYEELPGGE ICPER AN+F IFF
Sbjct: 180 VAVQVAFGTLLFVYFPNLDPYPGYTPVGTENSEDYEYEELPGGENICPERHANLFDSIFF 239
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SW+NPLM G ++ +TEKDVW LDTWD+TETL FQK W KE ++PKPWLLRALN+SLG
Sbjct: 240 SWLNPLMTLGSKRPLTEKDVWHLDTWDKTETLMRSFQKSWDKELEKPKPWLLRALNNSLG 299
Query: 301 GRFWWGGFWKIGNDLSXXXXXXXXXXXXXXXXXDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFWWGGFWKIGND S + PAWIGYIYA SIFVGVVLGVLCEAQ
Sbjct: 300 GRFWWGGFWKIGNDCSQFVGPLLLNELLKSMQLNEPAWIGYIYAISIFVGVVLGVLCEAQ 359
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVG+RLRS L+AAVFRKSLR+T+E RK F +GKITNLMTTDAE LQQ+CQ+LHT
Sbjct: 360 YFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRKKFQTGKITNLMTTDAESLQQICQSLHT 419
Query: 421 LWSAPFRIIISLVLLYNEXXXXXXXXXXXXXFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
+WSAPFRII++LVLLY + MFP+QT IIS+ QKLTKEGLQRTDKRIG
Sbjct: 420 MWSAPFRIIVALVLLYQQLGVASIIGALFLVLMFPIQTVIISKTQKLTKEGLQRTDKRIG 479
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNE+LAAMD VKCYAWENSFQSKVQ VR+DELSWFRKAQ L+A N FILNSIPVLVTVV
Sbjct: 480 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNMFILNSIPVLVTVV 539
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+F+LLGGDLTPARAFTSLSLF+VLRFPLFMLPN+ITQ+VNANVSL R+EE L EE+
Sbjct: 540 SFGVFSLLGGDLTPARAFTSLSLFSVLRFPLFMLPNIITQMVNANVSLNRLEEVLSTEER 599
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
+LLPNPP+ G PAISIRNGYFSWDSKA+RPTL NINLDIP+GSLVA+VG TGEGKTSLI
Sbjct: 600 VLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLDIPLGSLVAVVGSTGEGKTSLI 659
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELP SDA+ +RG+VAYVPQVSWIFNATVRDNILFG+ F+ +YE+ IDVT+LQ
Sbjct: 660 SAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNILFGAPFDQEKYERVIDVTALQ 719
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDL+LLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV I DDPLSALDAHVG+QVF
Sbjct: 720 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCILDDPLSALDAHVGQQVF 779
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
++CI+ EL TRVLVTNQLHFLSQVD+I+LVHEG VKEEGT+E+L ++G LFQ+LMENA
Sbjct: 780 EKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKEEGTYEELCHSGPLFQRLMENA 839
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GK+E+Y EE + E VD + KP NG N+L K+ +T+ +KEG SVL+K+EERETGVV
Sbjct: 840 GKVEDYSEENGEAE-VDQTSVKPVENGNANNLQKDGIETKNSKEGNSVLVKREERETGVV 898
Query: 901 SFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+KVL RY++A CY LT+ RVSSSTWLS WTD + KTHGPLFYN +Y
Sbjct: 899 SWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWLSEWTDSGTPKTHGPLFYNIVY 958
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LLSFGQV VTL NSYWLI+SSLYAAK++HDAML SILRAPMVFF TNPLGRIINRFAKD
Sbjct: 959 ALLSFGQVSVTLINSYWLIMSSLYAAKKMHDAMLGSILRAPMVFFQTNPLGRIINRFAKD 1018
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTARE 1080
+GDIDR VAVFVNMFMG ++QLLST +LIGIVST+SLWAIMP Q+T+RE
Sbjct: 1019 MGDIDRTVAVFVNMFMGSIAQLLSTVILIGIVSTLSLWAIMPLLVVFYGAYLYYQNTSRE 1078
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
+KR+DS TRSPVYAQFGEALNGLS+IRAYKAYDRMA+ING+SMD NIR+TLVNM ANRWL
Sbjct: 1079 IKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEINGRSMDNNIRFTLVNMAANRWL 1138
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
IRLE++GGLM+WLTA+ AV+QNG A NQ+A+ASTMGLLLSYAL+ITS LTAVLRLASLA
Sbjct: 1139 GIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLLLSYALSITSSLTAVLRLASLA 1198
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVGNYIE+PSEAPLVIE+NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG+S
Sbjct: 1199 ENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGVS 1258
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F I P DKVGIVGRTGAGKSS+LN LFRIVELE+GRILID DI +FGLMDLRK+LGIIP
Sbjct: 1259 FLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILIDECDIGRFGLMDLRKVLGIIP 1318
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
Q+PVLFSGTVRFNLDPFSEH+DADLWE+LERAHLKD IRRN LGLDA+V+EAGENFSVGQ
Sbjct: 1319 QAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIRRNPLGLDAEVTEAGENFSVGQ 1378
Query: 1381 RQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQ KILVLDEATAAVDVRTD LIQKTIREEFKSCTMLIIAHRLNTIIDC
Sbjct: 1379 RQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIREEFKSCTMLIIAHRLNTIIDC 1438
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREEN 1500
D++L+LDSG+V E+ +PE LLSN SSFSKMVQSTG ANA+YLRS+ L + + ++
Sbjct: 1439 DKVLVLDSGKVQEFSSPENLLSNGESSFSKMVQSTGTANAEYLRSITLENKRTREANGDD 1498
Query: 1501 KQ-IDGXXXXXXXXXXXXXXXXXXXVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGV 1559
Q ++G VSLTSSHNDLQ LE+ED N+ILKKTKDAVVTL+ V
Sbjct: 1499 SQPLEGQRKWQASSRWAAAAQFALAVSLTSSHNDLQSLEIEDDNSILKKTKDAVVTLRSV 1558
Query: 1560 LEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWD 1619
LEGKHDKEIE+SLNQ ++S + WW +LY+M+EGL+VMSRLARNR+ DY+LE +S DWD
Sbjct: 1559 LEGKHDKEIEDSLNQSDISRERWWPSLYKMVEGLAVMSRLARNRMQHPDYNLEGKSFDWD 1618
Query: 1620 HVEM 1623
+VEM
Sbjct: 1619 NVEM 1622
|
|
| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5132 (1811.6 bits), Expect = 0., P = 0.
Identities = 986/1487 (66%), Positives = 1176/1487 (79%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ L+WYC+P+A G W K D AFGAYTPCA DSLV+ VS+ +L+GLCFYRIW+ +
Sbjct: 1 MGFEALNWYCKPIAEGFWEKTPDGAFGAYTPCAIDSLVMIVSNSVLLGLCFYRIWITLYN 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
K Q + L+ Y+ +L LA C EP+ +L+MGIS D+ ++ L PFE+ SL++EA
Sbjct: 61 AKAQIYVLRKMYYHCVLWILACCCVVEPVLRLVMGISLFDMGDETDLPPFEVASLMVEAF 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W +ML++I +ETK Y++EFRW+VRFGV+Y LV DAV+++L+L +KN N + LYL +S
Sbjct: 121 AWFAMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTALYLCISS 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
QALFG+LLLVY+PELD YP Y + E +D+ EY+ LPGG ICPER A+IFS I+F
Sbjct: 181 RCCQALFGILLLVYIPELDLYPDYHILNNESLDNVEYDALPGGVNICPERYASIFSGIYF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWM PLM+ GY K ITE+DVW+LD WDQTETL +FQ+CW +ES+RPKPWLLRALN+SLG
Sbjct: 241 SWMTPLMQLGYRKPITERDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 301 GRFWWGGFWKIGNDLSXXXXXXXXXXXXXXXXXDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
RFW GG +K+G+DLS PAW+GY+YAF IF GV GVLC++Q
Sbjct: 301 RRFWLGGIFKVGHDLSQFVGPVILSHILQSMIEGDPAWVGYVYAFLIFFGVTFGVLCQSQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQ+V RVGFRLRSTLVAA+F KSLR+T++ARKNFASGK+TN++TTDA LQ + + LH
Sbjct: 361 YFQHVGRVGFRLRSTLVAAIFHKSLRLTNKARKNFASGKVTNMITTDANALQLIAEQLHG 420
Query: 421 LWSAPFRIIISLVLLYNEXXXXXXXXXXXXXFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRII+S+VLLY + + P QT I+ +M+KLTKEGLQ TDKR+G
Sbjct: 421 LWSAPFRIIVSMVLLYQQLGVASIFGSLILFLLIPFQTLIVRKMRKLTKEGLQWTDKRVG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
++ EILA+MD VKCYAWE SF+S++Q +RN+ELSWFRKAQ L+A NSFILNS PV+VT+V
Sbjct: 481 IIYEILASMDIVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSTPVVVTLV 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG++ LLGGDLTPARAFTSLSLFAVLR PL LPN+I+Q VNANVSL+R+EE LL+EE+
Sbjct: 541 SFGVYVLLGGDLTPARAFTSLSLFAVLRSPLSTLPNLISQAVNANVSLQRIEELLLSEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
IL NPPL G PAISI+NGYFSWDSK +PTL +INL+IPVGSLVAIVGGTGEGKTSLI
Sbjct: 601 ILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGEL +S IRG+VAYVPQVSWIFNAT+R+NILFGS FE RY +AIDVT+LQ
Sbjct: 661 SAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENILFGSDFESERYWRAIDVTALQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDL PG D TEIGERGVNISGGQKQRVSMARAVYSNSD++IFDDP SALDAHV QVF
Sbjct: 721 HDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPFSALDAHVAHQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KEEG F +LS +G LF+KLMENA
Sbjct: 781 DSCVKHELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGNFAELSKSGTLFKKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKM+ E + E + +K V + ++ K G+S+L+KQEERETG++
Sbjct: 841 GKMDATQEVNTNDENI-SKLGPTVTIDVSE---RSLGSIQQGKWGRSMLVKQEERETGII 896
Query: 901 SFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+ V+ RY A CY TE LRV SSTWLS WTDQS+ K++ P FY +Y
Sbjct: 897 SWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWLSIWTDQSTPKSYSPGFYIVVY 956
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILRAPM+FF TNP GR+INRF+KD
Sbjct: 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFETNPTGRVINRFSKD 1016
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTARE 1080
+GDIDRNVA +NMFM Q+ QLLSTF LIGIVST+SLWAIMP QST+RE
Sbjct: 1017 IGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWAIMPLLILFYATYIYYQSTSRE 1076
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
V+RLDS+TRSP+YA FGEALNGLS+IRAYKAYDRMA INGKSMD NIR+TL + +NRWL
Sbjct: 1077 VRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLASTSSNRWL 1136
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
IR E +GG+MIWLTATFAV++ G+AENQ FASTMGLLLSY LNIT+LL+ VLR AS A
Sbjct: 1137 TIRSESLGGVMIWLTATFAVLRYGNAENQAVFASTMGLLLSYTLNITTLLSGVLRQASKA 1196
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSI+FEDV LRYRP LPPVLHGLS
Sbjct: 1197 ENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIQFEDVHLRYRPGLPPVLHGLS 1256
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F + PS+KVG+VGRTGAGKSSMLN L+RIVELE+GRILID +D+AKFGL DLR++L IIP
Sbjct: 1257 FFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKGRILIDDYDVAKFGLTDLRRVLSIIP 1316
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
QSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I RN GLDA+VSE GENFSVGQ
Sbjct: 1317 QSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQ 1376
Query: 1381 RQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQ KIL LDEATA+VDVRTD+LIQ+TIREEFKSCTMLIIAHRLNTIIDC
Sbjct: 1377 RQLLSLARALLRRSKILFLDEATASVDVRTDSLIQRTIREEFKSCTMLIIAHRLNTIIDC 1436
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLV 1487
D+IL+L SG+VLEYD+P+ELLS + S+F KMV STG N QYL +LV
Sbjct: 1437 DKILVLSSGQVLEYDSPQELLSRDTSAFFKMVHSTGPENGQYLSNLV 1483
|
|
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 9.8e-254, Sum P(4) = 9.8e-254
Identities = 266/600 (44%), Positives = 371/600 (61%)
Query: 883 KEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYW 942
K+G+ LI++E ETG V F V +Y A YF+ + + WLS W
Sbjct: 964 KKGQR-LIEKEMMETGRVKFSVYLQYLSAMGWWYVGFSFVF-YFIQNVAVIGQNLWLSDW 1021
Query: 943 TDQSSL---KTHGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 996
TD S +T+ +T ++ L Q + + L S+ A++ LH ++L +
Sbjct: 1022 TDDSIEYFNQTYPNHIRDTRIGVFGALGLAQGFLVFFGTILLADGSISASRTLHTSLLTN 1081
Query: 997 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 1056
IL+ PM+FF T P GRI+NRFAKD+ +D + + ++ + +L T +I + + +
Sbjct: 1082 ILKVPMMFFDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGVLGTLFVICLATPIF 1141
Query: 1057 LWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 1116
++P +T+R+++RLDS++RSP+Y+ FGE ++GLS IRAY DR
Sbjct: 1142 TAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFL 1201
Query: 1117 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTM 1176
N ++D+N++ + +NRWLA+RLE +G L+++ A FAV+ S + +
Sbjct: 1202 KHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVISRDSLNS-----GLV 1256
Query: 1177 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 1236
GL +SYALN+T L ++R+ S E ++ AVERV Y E+ +EAP V S RPP WPS+
Sbjct: 1257 GLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYAEIQNEAPWVT-SVRPPDDWPSA 1315
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G+I+FED +RYRPEL VLHG++ I ++K+GIVGRTGAGKSS+ N LFRIVE GR
Sbjct: 1316 GNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADGR 1375
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1356
ILID DIA GL DLR L IIPQ PVLFSGT+R NLDPF SDA++W LE AHLK+
Sbjct: 1376 ILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLKE 1435
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQK 1416
+R GL+ +VSE GEN S+GQRQ +IL+LDEATAAVD+ TD LIQ
Sbjct: 1436 YVRGLPTGLEHEVSEGGENLSLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQS 1495
Query: 1417 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1476
TIR EF CT+L IAHRLNTI+D R+++LDSG+++E+D+P ELLS G FS M + G
Sbjct: 1496 TIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFDSPNELLSKPGH-FSSMAEDAG 1554
|
|
| UNIPROTKB|Q28689 ABCC2 "Canalicular multispecific organic anion transporter 1" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 4.8e-240, Sum P(3) = 4.8e-240
Identities = 278/706 (39%), Positives = 396/706 (56%)
Query: 788 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVK-EEGTFEDLSNNGELFQKLMENAGKMEEY 846
L K V N F+ D EG V +G+ ED ++ L + E
Sbjct: 846 LLAKKGVFAKNLKMFVKHTDS-----EGEVTVNDGSEEDDDDDSGLISSIEEFPEDSISL 900
Query: 847 VEEKEDG--ETVD--NKTSKPAANGVDNDLPKEASDTRKTKE---GKSVLIKQEERETGV 899
++E+ T+ +++S + N L + T K +E G+ LIK+E ETG
Sbjct: 901 TLKRENSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK-LIKKEFMETGK 959
Query: 900 VSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSLK--THGPLFYN 957
V F + +Y A Y L + S+ WLS WT S+ T+ P
Sbjct: 960 VKFSIYLKYLQAIGWCSIVGIIFA-YVLNSVAFIGSNLWLSAWTSDSNTYNGTNYPASQR 1018
Query: 958 T----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 1013
I+ +L Q L L S+W +A+ LH +L++ILRAPM FF+T P+GRI
Sbjct: 1019 DLRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAPMSFFNTTPIGRI 1078
Query: 1014 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXX 1073
+NRFA D+ +D + + +M ++ST ++I + + + I+P
Sbjct: 1079 VNRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIIIPLAIIYVAVQVF 1138
Query: 1074 XQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 1133
+T+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N +D N +
Sbjct: 1139 YVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEIGIDTNQKCVSSW 1198
Query: 1134 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 1193
+ +NRWLA RLE+VG L+++ +A V+ + +G +LS ALNIT L +
Sbjct: 1199 ITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLSGD-----VVGFVLSNALNITQTLNWL 1253
Query: 1194 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 1253
+R+ S E ++ AVER+ YI++ +EAP V + RPP GWP G I+F + +RYRPEL
Sbjct: 1254 VRMTSETETNIVAVERITEYIKVENEAPWVTDK-RPPAGWPHKGEIQFSNYQVRYRPELD 1312
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G I IDG DIA GL DLR
Sbjct: 1313 LVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDGIDIASIGLHDLR 1372
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373
L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE AHLK + GL +VSEA
Sbjct: 1373 GKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLSREVSEAE 1432
Query: 1374 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1433
+N S+GQRQ KILVLDEATAAVD+ TD LIQ TIR EF CT++ IAHR
Sbjct: 1433 DNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHR 1492
Query: 1434 LNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1479
L+TI+D D+I++LD+G ++EY +PEELL + G FS M + +G N
Sbjct: 1493 LHTIMDSDKIMVLDNGNIVEYGSPEELLESAGP-FSLMAKESGIEN 1537
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 7.0e-239, Sum P(3) = 7.0e-239
Identities = 258/621 (41%), Positives = 374/621 (60%)
Query: 870 NDLPKEASDTRKTKE----GKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCY 925
N L +T K +E G+ LIK+E +TG V F + +Y A Y
Sbjct: 928 NSLKTRNVNTLKEEEEPVKGQK-LIKKEFIQTGKVKFSIYLKYLRAIGWYLIFLIIFA-Y 985
Query: 926 FLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQ-VLVTLANSYWL 978
+ + S+ WLS WT+ S T+ P +Y +L Q V V +AN
Sbjct: 986 VINSVAYIGSNLWLSAWTNDSKAFNGTNYPASQRDMRIGVYGVLGLAQGVFVLMANLL-S 1044
Query: 979 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 1038
S +A+ LH +L++IL+APM FF T P GRI+NRFA D+ +D + + ++
Sbjct: 1045 AHGSTHASNILHRQLLNNILQAPMSFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWILC 1104
Query: 1039 VSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGE 1098
++ST V+I + + + I+P +T+R++KRLDS+TRSP+Y+ F E
Sbjct: 1105 FLGIISTLVMICTATPVFIIVIIPLSIIYVSIQIFYVATSRQLKRLDSVTRSPIYSHFSE 1164
Query: 1099 ALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATF 1158
++GLS IRA++ R N +D N + + +NRWLA+RLE++G L+++ ++
Sbjct: 1165 TVSGLSVIRAFEHQQRFLKHNEVGIDTNQKCVFSWIVSNRWLAVRLELIGNLIVFFSSLM 1224
Query: 1159 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 1218
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI++ +
Sbjct: 1225 MVIYKATLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIKVEN 1279
Query: 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 1278
EAP V + RPPPGWPS G I+F + +RYRPEL VL G++ I +K+G+VGRTGAG
Sbjct: 1280 EAPWVTDK-RPPPGWPSKGEIRFNNYQVRYRPELDLVLRGITCDIRSMEKIGVVGRTGAG 1338
Query: 1279 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 1338
KSS+ N LFRI+E G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+
Sbjct: 1339 KSSLTNGLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFN 1398
Query: 1339 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILV 1398
+SD ++W+ALE AHLK + LGL +V+EAG+N S+GQRQ KIL+
Sbjct: 1399 HYSDEEIWKALELAHLKTFVAGLQLGLSHEVAEAGDNLSIGQRQLLCLARALLRKSKILI 1458
Query: 1399 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPE 1458
+DEATAAVD+ TD LIQ TI++EF CT + IAHRL+TI+D D+I++LD+G+++EY +P+
Sbjct: 1459 MDEATAAVDLETDHLIQMTIQKEFSHCTTITIAHRLHTIMDSDKIIVLDNGKIVEYGSPQ 1518
Query: 1459 ELLSNEGSSFSKMVQSTGAAN 1479
ELL N G F M + G N
Sbjct: 1519 ELLRNSGP-FYLMAKEAGIEN 1538
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 1.0e-237, Sum P(2) = 1.0e-237
Identities = 258/680 (37%), Positives = 391/680 (57%)
Query: 819 EEGTFEDLS-NNGELFQKLMENAGK---MEEYVEEKEDGETVDNKTSKPAANGVDNDLPK 874
E ED+ + GE Q ++ K +++ + + T NK + +GV K
Sbjct: 911 ERELMEDIDIDGGENIQTPLQKGEKSSVLKQPLRLLKKLPTSINKKLNNSGSGVSL---K 967
Query: 875 EASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVS 934
+ + K+ +I E ++ G VSFK+ Y A Y LT+ L +
Sbjct: 968 PITTVNAKPQDKNKIISVETKQEGKVSFKIYLSYFKAIGVLLATCIIGF-YVLTQLLSIL 1026
Query: 935 SSTWLSYWTDQS------------SLKTHGPL-------FYNTIYSLLSFGQVLVTLANS 975
++ W+S WT+ SL + + +Y +IY S G + T S
Sbjct: 1027 ANWWISIWTNSYGGNGNGSGSGSISLSSSSTVEDNEKAKYYLSIYVAFSCGTIAATFLRS 1086
Query: 976 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 1035
+ ++ S+ +K H+ M +++ +PM FF T P+GRI+NRF+KD ID ++A + MF
Sbjct: 1087 FSMVFGSIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIARTLGMF 1146
Query: 1036 MGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQ 1095
+ Q++ + ++I VS + A++P +++RE+ RL+ ++RSP+YA
Sbjct: 1147 LNTFCQVVGSIIVIAWVSPFIILAMVPVGALFYFIQKYYLNSSRELTRLEGVSRSPIYAH 1206
Query: 1096 FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 1155
F E L G++TIRA+K R N + +D+N + +N+ +NRWLAIRLE +G ++
Sbjct: 1207 FSETLAGVTTIRAFKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVSCA 1266
Query: 1156 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 1215
+ V+ E A T GL+++YAL IT + ++R++ ENS+ ++ER+ Y
Sbjct: 1267 VLYTVLARSRIE-----AGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEYCL 1321
Query: 1216 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 1275
LPSEAPL + + P WPS G I F+++ L YR L PVL G++ TI P KVGIVGRT
Sbjct: 1322 LPSEAPLFNDKS-VPMSWPSHGKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVGRT 1380
Query: 1276 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 1335
GAGKSS+ LFR+VE RG I IDG DI + GL LR + IIPQ PVLF+G+VR+NLD
Sbjct: 1381 GAGKSSLTQALFRLVEPLRGTIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLD 1440
Query: 1336 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXK 1395
PF ++ D ++WEA+E AHL AI+ GLDA V + G+NFSVGQRQ
Sbjct: 1441 PFDQYDDHEIWEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKAN 1500
Query: 1396 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1455
I+VLDEA++++D+ +DALIQ+TIR +F CT+L IAHRL TI D D+I++LD G ++EYD
Sbjct: 1501 IIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYD 1560
Query: 1456 TPEELLSNEGSSFSKMVQST 1475
+P ELL N+ S + +V+++
Sbjct: 1561 SPSELLKNQDSIYYSLVKAS 1580
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 5.6e-237, Sum P(3) = 5.6e-237
Identities = 254/600 (42%), Positives = 363/600 (60%)
Query: 889 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 948
LIK+E ETG V F + +Y A Y L + ++ WLS WT S
Sbjct: 949 LIKKEFVETGKVKFSIYLKYLQAVGWWSLLFIVIF-YVLNYVAFIGTNLWLSAWTSDSEK 1007
Query: 949 KT---HGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 1002
+ + P + ++ L Q + L++S W I + A+K LH +L +ILRAPM
Sbjct: 1008 QNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPM 1067
Query: 1003 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 1062
FF T P GRI+NRFA D+ +D + + ++ ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIIIP 1127
Query: 1063 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 1122
+T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K
Sbjct: 1128 LSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQ 1187
Query: 1123 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 1182
+D N + + +NRWLAIRLE+VG L+++ +A V+ S T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLTGD-----TVGFVLSN 1242
Query: 1183 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 1242
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + +PP WP G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTDK-KPPADWPKKGEIQFN 1301
Query: 1243 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 1302
+ +RYRPEL VL G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGI 1361
Query: 1303 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1362
DIA GL DLR L IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK +
Sbjct: 1362 DIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQ 1421
Query: 1363 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 1422
LGL +V+E G+N S+GQRQ KILVLDEATAAVD+ TD+LIQ TIR EF
Sbjct: 1422 LGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEF 1481
Query: 1423 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 1482
CT++ IAHRL+TI+D D+I++LDSG+++EY +PEELLSN G F M + G + +
Sbjct: 1482 SQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGP-FYLMAKEAGIESVNH 1540
|
|
| UNIPROTKB|F1S8V9 ABCC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 9.1e-237, Sum P(3) = 9.1e-237
Identities = 262/682 (38%), Positives = 390/682 (57%)
Query: 812 VHEGMVKEEGTF-EDLSNNG-ELFQKLMENAGKMEEYVEEKEDGETVD--NKTSKPAANG 867
V E ++E T ED + EL + EN E +T+ +++S
Sbjct: 865 VKEAGPEDEATVNEDSEEDACELMPSVEENPEDAASLKRENSLRQTLSRSSRSSSRRLKS 924
Query: 868 VDNDLPKEASDTRKTKEGKSV----LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXX 923
+ + L + K +E + V LIK+E +TG V F + +Y A
Sbjct: 925 LKDSLKTRKGNILKEEETEPVKGQKLIKKEFLQTGKVKFSIYLKYLQAIGWCSIVFIVLG 984
Query: 924 CYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYW 977
+ L + S+ WLS WT S + T+ P ++ L Q + L +
Sbjct: 985 -FMLYSVAFIGSNLWLSAWTGDSKIYNSTNYPTSQRDLRVGVFGALGLAQGIFVLIATLC 1043
Query: 978 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMG 1037
+ +A+ LH +L +ILRAPM FF T P+GRI+NRFA D+ +D + + + ++
Sbjct: 1044 SVYGCTHASSILHTQLLSNILRAPMSFFDTTPIGRIVNRFAGDISTLDDTLPMSLRSWLM 1103
Query: 1038 QVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFG 1097
++ST V+I + + + + I+P +T+R+++RLDS+TRSP+Y+ F
Sbjct: 1104 CFLGIISTLVMICLATPVFVIIIIPLGIIYVAVQIFYVATSRQLRRLDSVTRSPIYSHFS 1163
Query: 1098 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTAT 1157
E ++GL IRA++ R N ++D N + + +NRWLA+RLE +G ++++ ++
Sbjct: 1164 ETVSGLPVIRAFEHQQRFLKHNEITIDTNQKCVFSWIISNRWLAVRLEFIGNMIVFCSSL 1223
Query: 1158 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 1217
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI +
Sbjct: 1224 MMVIYRNTLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIHVE 1278
Query: 1218 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 1277
+EAP V + RPP GWPS G I+F + +RYRPEL VL G++ I ++K+G+VGRTGA
Sbjct: 1279 NEAPWVTDK-RPPDGWPSKGEIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGA 1337
Query: 1278 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 1337
GKSS+ N+LFRI+E G+I IDG DIA GL DLR+ L IIPQ P+LFSGT+R NLDPF
Sbjct: 1338 GKSSLTNSLFRILEAAGGQITIDGVDIASIGLHDLREKLTIIPQDPILFSGTLRMNLDPF 1397
Query: 1338 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKIL 1397
+ +SD +LW+ALE AHLK + LGL +V+E G+N S+GQRQ KIL
Sbjct: 1398 NSYSDEELWKALELAHLKSFVSHLQLGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKIL 1457
Query: 1398 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457
++DEATAAVD+ TD LIQ TI+ EF CT + IAHRL+TI+D D++++LD+G +++YD+P
Sbjct: 1458 IMDEATAAVDLETDHLIQTTIQTEFSHCTTITIAHRLHTIMDSDKVMVLDNGNIVQYDSP 1517
Query: 1458 EELLSNEGSSFSKMVQSTGAAN 1479
EELL G F M Q G N
Sbjct: 1518 EELLKTPGP-FYYMAQEAGIEN 1538
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 8.1e-236, Sum P(3) = 8.1e-236
Identities = 247/597 (41%), Positives = 360/597 (60%)
Query: 889 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 948
LIK+E +TG V F + +Y A + + + S+ WLS WT S +
Sbjct: 949 LIKKEFVQTGKVKFSIYLKYLQAIGWCSIVFILLG-FVIYYVAFIGSNLWLSAWTSDSKI 1007
Query: 949 K--THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 1002
T+ P +Y L Q L + W + +A+ LH +L++ILRAPM
Sbjct: 1008 YNGTNYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHKQLLNNILRAPM 1067
Query: 1003 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 1062
FF T P+GRI+NRFA DL +D + + + + ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLATPIFVVVIIP 1127
Query: 1063 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 1122
+T+R+++RLDS+TRSP+Y+ F E ++GLS IRA++ R + +
Sbjct: 1128 LGIIYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQRFLKQSETA 1187
Query: 1123 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 1182
+D N + + +NRWLA+RLE++G L+++ + V+ + T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAVRLELIGNLIVFFASLMMVIYRNNLSGD-----TVGFVLSN 1242
Query: 1183 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 1242
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + RPP GWPS G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPWVTDK-RPPEGWPSKGEIQFS 1301
Query: 1243 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 1302
+ +RYRPEL VL G++ I ++K+G+VGRTGAGKSS+ N LFRI+E G+I IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQITIDGV 1361
Query: 1303 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1362
DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE +HLK +
Sbjct: 1362 DIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHLKSFVAGLQ 1421
Query: 1363 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 1422
GL +V+E G+N S+GQRQ KIL++DEATAAVD+ TD LIQ TI+ EF
Sbjct: 1422 AGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTTIQTEF 1481
Query: 1423 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1479
CT + IAHRL+TI+D D++++LDSG+++EYD+PEELL N G F M Q G N
Sbjct: 1482 SHCTTITIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLKNPGP-FYFMAQEAGIEN 1537
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q42093 | AB2C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7874 | 0.9969 | 0.9969 | yes | no |
| Q9C8H0 | AB12C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7190 | 0.9143 | 0.9926 | no | no |
| Q63120 | MRP2_RAT | No assigned EC number | 0.3573 | 0.8404 | 0.8851 | yes | no |
| Q9C8G9 | AB1C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7690 | 0.9963 | 0.9969 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1623 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.0 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-128 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-101 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-100 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-97 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-83 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-78 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-77 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-76 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-75 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-70 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-65 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-65 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-64 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-59 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-57 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-57 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-56 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-56 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-56 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-55 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-54 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-53 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-53 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-53 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-52 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-52 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-52 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-51 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-50 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-50 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-49 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-49 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-48 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-47 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-46 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-46 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-44 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-43 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-42 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-42 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-41 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-41 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-40 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-40 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-40 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-39 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-38 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-38 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-36 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-36 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-35 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-34 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-34 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-33 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-33 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-32 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-32 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-31 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-31 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-31 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-31 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-30 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-30 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 9e-30 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-29 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-29 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-28 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-28 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-27 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-26 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-26 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-26 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-26 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-25 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-25 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-25 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-25 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-25 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-24 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-24 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-24 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-24 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-24 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-24 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-24 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-23 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-23 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-23 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-23 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-23 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-23 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-22 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-22 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-22 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-21 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-20 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-20 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-20 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-20 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-20 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-20 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-19 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-19 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-19 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-19 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-18 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-18 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-18 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-18 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-16 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-16 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-16 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 8e-16 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-15 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-15 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-15 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-15 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-15 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-14 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-14 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-14 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-14 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-13 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-13 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-13 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-12 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-12 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-11 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-11 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-11 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 5e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-11 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-10 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 6e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-09 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 6e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 8e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 7e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 9e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 9e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-07 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 8e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 9e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 5e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 8e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-04 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 8e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.003 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.003 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 3362 bits (8718), Expect = 0.0
Identities = 1377/1623 (84%), Positives = 1501/1623 (92%), Gaps = 1/1623 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+PLDWYCRPV NGVW K VDNAFGAYTPCATDSLV+++SHL+L+GLC YRIWLIKKD
Sbjct: 1 MGFEPLDWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKD 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
KVQRFCL+SK YNY L LAAYCTAEPLF+L+MGIS L+LDGQ+ L PFEI+SLI+EAL
Sbjct: 61 HKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEAL 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
WCSML+MI VETK+YIREFRW+VRF VIY LVGDAVM+NL+LSVK +Y+S VLYLY+SE
Sbjct: 121 TWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFVLYLYISE 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
V Q LFG+LLLVY P LDPYPGYTP+ +E VDD EYEELPGGEQICPER ANIFSRIFF
Sbjct: 181 VAAQVLFGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
WM PLM+ GY++ +TEKDVWKLDTWDQTETL FQKCW +E ++PKPWLLRALN+SLG
Sbjct: 241 GWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFW GGF+KIGNDLSQFVGPLLLN LL+SMQ PAWIGYIYAFSIFVGVVLGVLCEAQ
Sbjct: 301 GRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNVMRVGFRLRSTLVAAVFRKSLR+THE RK F SGKITNLMTTDAE LQQ+CQ LHT
Sbjct: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRIII++VLLY +LGVASL+G+L+LV MFP+QTFIIS+MQKLTKEGLQRTDKRIG
Sbjct: 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
LMNE+LAAMD VKCYAWENSFQSKVQ VR+DELSWFRKAQ L+A NSFILNSIPVLVTVV
Sbjct: 481 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVV 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN+ITQ VNANVSLKR+EE LLAEE+
Sbjct: 541 SFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
+LLPNPPL GLPAISI+NGYFSWDSKAERPTL NINLD+PVGSLVAIVG TGEGKTSLI
Sbjct: 601 VLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGELPP SDAS VIRGTVAYVPQVSWIFNATVRDNILFGS F+P RYE+AIDVT+LQ
Sbjct: 661 SAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDLLPGGD+TEIGERGVNISGGQKQRVSMARAVYSNSDV+IFDDPLSALDAHVGRQVF
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D+CI+ EL GKTRVLVTNQLHFLSQVDRIILVHEGM+KEEGT+E+LSNNG LFQKLMENA
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKMEEYVEE E D +SKP ANG N+L K++S +K+KEGKSVLIKQEERETGVV
Sbjct: 841 GKMEEYVEE-NGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVV 899
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+KVL RYK+ALGG WVV+IL LCY LTE RVSSSTWLS WTDQ + KTHGPLFYN IY
Sbjct: 900 SWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIY 959
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LLSFGQVLVTL NSYWLI+SSLYAAKRLHDAML SILRAPM FFHTNPLGRIINRFAKD
Sbjct: 960 ALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKD 1019
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
LGDIDRNVAVFVNMF+GQ+ QLLSTFVLIGIVST+SLWAIMPLL+LFY AYLYYQSTARE
Sbjct: 1020 LGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTARE 1079
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA+ING+SMD NIR+TLVNM +NRWL
Sbjct: 1080 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWL 1139
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
AIRLE +GGLMIWLTA+FAV+QNG AENQ AFASTMGLLLSYALNITSLLTAVLRLASLA
Sbjct: 1140 AIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLA 1199
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLNAVERVG YI+LPSEAPLVIE+NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS
Sbjct: 1200 ENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1259
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F I PS+KVGIVGRTGAGKSSMLN LFRIVELERGRILIDG DI+KFGLMDLRK+LGIIP
Sbjct: 1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIP 1319
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
Q+PVLFSGTVRFNLDPF+EH+DADLWE+LERAHLKD IRRNSLGLDA+VSEAGENFSVGQ
Sbjct: 1320 QAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQ 1379
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC
Sbjct: 1380 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREEN 1500
DRIL+LD+GRV+E+DTPE LLSNEGS+FSKMVQSTGAANAQYLRSLV GG+ + REE+
Sbjct: 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDEDRLAREES 1499
Query: 1501 KQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVL 1560
K +DGQR+WLASSRWAAAAQ+ALAVSLTSS NDLQ LE+ED+N+IL+KTKDAV+TLQ VL
Sbjct: 1500 KALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQSLEIEDENSILEKTKDAVITLQSVL 1559
Query: 1561 EGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDH 1620
EGKHDKEI+ESLNQ +V DGWWS+LYRM+EGL+VMSRLARNR+ QSD++ E +SIDWD+
Sbjct: 1560 EGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVMSRLARNRMQQSDHNFEGKSIDWDN 1619
Query: 1621 VEM 1623
VEM
Sbjct: 1620 VEM 1622
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 2499 bits (6477), Expect = 0.0
Identities = 1076/1488 (72%), Positives = 1266/1488 (85%), Gaps = 4/1488 (0%)
Query: 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKD 60
M F+ L+WYC+P+A G W K VD AFGAYTPCA DSLV+ VSH +L+GLCFYRIW+I +
Sbjct: 1 MGFEALNWYCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDN 60
Query: 61 FKVQRFCLKSKLYNYMLGFLAAYCTAEPLFQLIMGISALDLDGQSGLAPFEILSLIIEAL 120
K Q + L+ K YN +LG LA YC EP+ +L+MGIS D+D ++ L PFE+ SL++EA
Sbjct: 61 AKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAF 120
Query: 121 CWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYNSSVLYLYMSE 180
W SML++I +ETK Y++EFRW+VRFGV+Y LV DAV+++L+L +KN N + LYL +S
Sbjct: 121 AWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTALYLCISS 180
Query: 181 VIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFF 240
QALFG+LLLVY+PELDPYPGY + E +D+ EY+ L GGE ICPER A+IFSRI+F
Sbjct: 181 RCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYF 240
Query: 241 SWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
SWM PLM+ GY K ITEKDVW+LD WDQTETL +FQ+CW +ES+RPKPWLLRALN+SLG
Sbjct: 241 SWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
GRFW GG +KIG+DLSQFVGP++L+ LLQSMQ+ PAW+GY+YAF IF GV GVLCE+Q
Sbjct: 301 GRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQ 360
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
YFQNV RVGFRLRSTLVAA+F KSLR+THEARKNFASGK+TN++TTDA LQQ+ + LH
Sbjct: 361 YFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHG 420
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIG 480
LWSAPFRII+S+VLLY +LGVASL G+L+L + P+QT I+ +M+KLTKEGLQ TDKR+G
Sbjct: 421 LWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVG 480
Query: 481 LMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540
++NEILA+MD VKCYAWE SF+S++Q +RN+ELSWFRKAQ L+A NSFILNSIPV+VT+V
Sbjct: 481 IINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLV 540
Query: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600
SFG+F LLGGDLTPARAFTSLSLFAVLR PL MLPN+++QVVNANVSL+R+EE LL+EE+
Sbjct: 541 SFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600
Query: 601 ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
IL NPPL G PAISI+NGYFSWDSK +PTL +INL+IPVGSLVAIVGGTGEGKTSLI
Sbjct: 601 ILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI 660
Query: 661 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
SAMLGEL +S VIRG+VAYVPQVSWIFNATVR+NILFGS FE RY +AIDVT+LQ
Sbjct: 661 SAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQ 720
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
HDLDLLPG D+TEIGERGVNISGGQKQRVSMARAVYSNSD++IFDDPLSALDAHV QVF
Sbjct: 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
D C++ EL GKTRVLVTNQLHFL +DRIILV EGM+KEEGTF +LS +G LF+KLMENA
Sbjct: 781 DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840
Query: 841 GKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
GKM+ E + E + + V + T++ K G+SVL+KQEERETG++
Sbjct: 841 GKMDATQEVNTNDENILKLGPTVTID-VSE---RNLGSTKQGKRGRSVLVKQEERETGII 896
Query: 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIY 960
S+ VL RY A+GGLWVV+ILL+CY TE LRVSSSTWLS WTDQS+ K++ P FY +Y
Sbjct: 897 SWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVY 956
Query: 961 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKD 1020
+LL FGQV VT NS+WLI SSL+AAKRLHDAML+SILRAPM+FFHTNP GR+INRF+KD
Sbjct: 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKD 1016
Query: 1021 LGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 1080
+GDIDRNVA +NMFM Q+ QLLSTF LIG VST+SLWAIMPLL+LFYAAYLYYQST+RE
Sbjct: 1017 IGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSRE 1076
Query: 1081 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140
V+RLDS+TRSP+YAQFGEALNGLS+IRAYKAYDRMA INGKSMD NIR+TL N +NRWL
Sbjct: 1077 VRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWL 1136
Query: 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 1200
IRLE +GG+MIWLTATFAV++NG+AENQ FASTMGLLLSY LNIT+LL+ VLR AS A
Sbjct: 1137 TIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKA 1196
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
ENSLN+VERVGNYI+LPSEA +IE+NRP GWPS GSIKFEDV LRYRP LPPVLHGLS
Sbjct: 1197 ENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLS 1256
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
F + PS+KVG+VGRTGAGKSSMLN LFRIVELE+GRI+ID D+AKFGL DLR++L IIP
Sbjct: 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIP 1316
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
QSPVLFSGTVRFN+DPFSEH+DADLWEALERAH+KD I RN GLDA+VSE GENFSVGQ
Sbjct: 1317 QSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQ 1376
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
RQLLSL+RALLRRSKILVLDEATA+VDVRTD+LIQ+TIREEFKSCTML+IAHRLNTIIDC
Sbjct: 1377 RQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC 1436
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1488
D+IL+L SG+VLEYD+P+ELLS + S+F +MV STG ANAQYL +LV
Sbjct: 1437 DKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSNLVF 1484
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 1007 bits (2605), Expect = 0.0
Identities = 505/1331 (37%), Positives = 760/1331 (57%), Gaps = 92/1331 (6%)
Query: 227 CPERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKES-- 284
CPE A+ SRI F W+ + GY + + E D+W L+ D +E + + W KE
Sbjct: 202 CPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKK 261
Query: 285 --------------------------------------QRP-KPWLLRALNSSLGGRFWW 305
+P KP L + L + G F
Sbjct: 262 TRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLM 321
Query: 306 GGFWKIGNDLSQFVGPLLLNQLLQSMQQ-DGPAWIGYIYAFSIFVGVVLGVLCEAQYFQN 364
+K +DL F+GP +L+ L++ + P W GY Y +FV L L QYF
Sbjct: 322 SFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHI 381
Query: 365 VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSA 424
G R+++ ++ AV+RK+L IT+ ARK+ G+I NLM+ DA++ + ++ +WSA
Sbjct: 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSA 441
Query: 425 PFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNE 484
P ++I++L L+ LG + L G ++V M P+ + + + ++ D RI LMNE
Sbjct: 442 PLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNE 501
Query: 485 ILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGM 544
IL + +K YAWE +F KV+ +R +EL +K+ +L A +F P LV +++F +
Sbjct: 502 ILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAV 561
Query: 545 FTLLGGD--LTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 602
+ + + L +AF SL+LF +LRFPL +LP +I+ +V A+VSLKR+ FL EE L
Sbjct: 562 YVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE--L 619
Query: 603 LPNP----PLTSGLP-AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 657
P+ + G +I++ N F+W ++ PTL I IP G+LVA+VG G GK+
Sbjct: 620 EPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKS 678
Query: 658 SLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 717
SL+SA+L E+ V + ++G+VAYVPQ +WI N ++R+NILFG A Y++ ++
Sbjct: 679 SLLSALLAEMDKV-EGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC 737
Query: 718 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 777
+L DL++LP GD TEIGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+
Sbjct: 738 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
Query: 778 QVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 835
+F+ I G L KTR+LVT+ + +L QVD II++ G + E G++++L F +
Sbjct: 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAE 857
Query: 836 LMENAGKMEEYVEEKEDG---ETVDNKTSKPAANG------VDNDLPKEASDTRKTKEGK 886
+ E+ ++ + + K +K NG V L ++ S + +
Sbjct: 858 FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917
Query: 887 S-------------------VLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFL 927
S L++ ++ +TG V V Y A+G L++ + + +
Sbjct: 918 SRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFLSIFLFVC 976
Query: 928 TETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 985
++S+ WLS WTD + + ++Y L Q S + I + A
Sbjct: 977 NHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQA 1036
Query: 986 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 1045
++ LH +LH+ LR+PM FF P G ++NRF+K+L +D + + MFMG + ++
Sbjct: 1037 SRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA 1096
Query: 1046 FVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLST 1105
++I + + ++ I PL LL++ +Y +++R++KRL+S++RSPVY+ F E L G+S
Sbjct: 1097 LIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSV 1156
Query: 1106 IRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 1165
IRA++ +R + +D+N + ++ ANRWLA+RLE VG ++ A FAV+ S
Sbjct: 1157 IRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHS 1216
Query: 1166 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 1225
A +GL +SY+L +T L ++R++S E ++ AVER+ Y E EAP I+
Sbjct: 1217 LS-----AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQ 1271
Query: 1226 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 1285
PP GWP G ++F + LRYR +L VL ++ TI +KVGIVGRTGAGKSS+
Sbjct: 1272 ETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLG 1331
Query: 1286 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 1345
LFRI E G I+IDG +IAK GL DLR + IIPQ PVLFSG++R NLDPFS++SD ++
Sbjct: 1332 LFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEV 1391
Query: 1346 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
W ALE AHLK + LD + +E GEN SVGQRQL+ L+RALLR++KILVLDEATAA
Sbjct: 1392 WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAA 1451
Query: 1406 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
VD+ TD LIQ TIR +F+ CT+L IAHRLNTI+D R+++LD G V E+ P LL G
Sbjct: 1452 VDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG 1511
Query: 1466 SSFSKMVQSTG 1476
F M + G
Sbjct: 1512 -IFYSMAKDAG 1521
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 640 bits (1652), Expect = 0.0
Identities = 323/900 (35%), Positives = 493/900 (54%), Gaps = 58/900 (6%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 692
L ++++ +P G L ++G TG GK++L+ ++L + +S+ ++AYVPQ +WI N
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERSIAYVPQQAWIMN 734
Query: 693 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752
ATVR NILF + AR A+ V+ L+ DL L GG TEIGE+GVN+SGGQK RVS+A
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA 794
Query: 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 812
RAVY+N DV++ DDPLSALDAHVG +V + C G L+GKTRVL T+Q+H + + D ++ +
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854
Query: 813 HEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEYVE-EKEDGETVDNKTSKPAANGV 868
+G V+ G+ D S L +L EN E + E + +
Sbjct: 855 GDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVA 914
Query: 869 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 928
+ E D L+ +EE+ +G V + Y GGL +L + +T
Sbjct: 915 KQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVT 974
Query: 929 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 988
E + VSS WLS W+ +S + Y + G VL+ + S A +R
Sbjct: 975 ELVTVSSGVWLSMWSTRSFKLS------AATYLYVYLGIVLLGTFSVPLRFFLSYEAMRR 1028
Query: 989 ----LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 1044
+H +L S+ R M FF T PLGRI+NRF++D+ +D + M + Q L
Sbjct: 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNT----LPMSYLYLLQCLF 1084
Query: 1045 TFVLIGIVSTMS----LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEAL 1100
+ +V++ S L A++P L+Y +Y S RE++R+ S+ +SPV+ EAL
Sbjct: 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEAL 1144
Query: 1101 NGLSTIRAYKAYDRMADINGKSMDK-NIRYTLVNM--GANRWLAIRLEIVGGLMIWLTAT 1157
G +TI AY + + +++ + ++ Y+ + ANRWL +R+E + +++ + A
Sbjct: 1145 QGSATI---TAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIAL 1201
Query: 1158 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI-EL 1216
V+ + + L L+ A+ T+ L ++R + E +N+VER+ Y E+
Sbjct: 1202 IGVIGTMLRATSQEIG-LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEV 1260
Query: 1217 PSEA-----------------------PLVIESNRPPPGWP---SSGSIKFEDVVLRYRP 1250
P E +VIE P P +GS+ FE V +RYR
Sbjct: 1261 PHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE 1320
Query: 1251 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 1310
LP VL G+SF I P +KVGIVGRTG+GKS++L T R+VE+ G I ++G +I +GL
Sbjct: 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLR 1380
Query: 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1370
+LR+ +IPQ PVLF GTVR N+DPF E S A++W ALE L++ + S G+D++V
Sbjct: 1381 ELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 1371 EAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1429
E G N+SVGQRQL+ ++RALL++ S +++DEATA +D D IQ T+ F + T++
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 1430 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLG 1489
IAHRL+T+ D+I+++D G V E +P EL+ N S F MV++ G + A+ LV
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKRFLQLVGR 1560
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 397 bits (1022), Expect = e-128
Identities = 152/221 (68%), Positives = 178/221 (80%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G I+F++V LRYRP LPPVL +SF+I P +KVGIVGRTG+GKSS+L LFR+VEL G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1356
ILIDG DI+K GL DLR + IIPQ PVLFSGT+R NLDPF E+SD +LW+ALER LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
+ GLD V E GEN SVGQRQLL L+RALLR+SKILVLDEATA+VD TDALIQK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1417 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457
TIRE FK CT+L IAHRL+TIID DRIL+LD GRV+E+D+P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = e-101
Identities = 172/565 (30%), Positives = 280/565 (49%), Gaps = 13/565 (2%)
Query: 916 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 975
++L+ +L L+ L + + D L + LL+ ++ S
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 976 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 1035
Y L + +LR P+ FF G +I+R D+ + V+ + +
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133
Query: 1036 MGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 1094
+ L+ + VL+ +S ++L ++ L LL +R++ R + A
Sbjct: 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS-LLARKSRKLSRRVREALGELNA 192
Query: 1095 QFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 1154
+ E+L+G+ I+A+ A DR ++ ++ R L LA + ++ L L
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 1155 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 1214
+ + + Y L + + + + + SL + + A ER+
Sbjct: 253 VLALGGFL---VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERL---F 306
Query: 1215 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 1274
EL E P V + P + GSI+FE+V Y + PVL +SF+I P +KV IVG
Sbjct: 307 ELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGP 363
Query: 1275 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 1334
+G+GKS+++ L R+ + G ILIDG DI L LRK +GI+ Q P+LFSGT+R N+
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423
Query: 1335 DPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393
+ +D ++ EAL+ A+ + I G D V E G N S GQRQ L+++RALLR
Sbjct: 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483
Query: 1394 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
IL+LDEAT+A+D T+ALIQ +++ K T LIIAHRL+TI + DRI++LD+GR++E
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 1454 YDTPEELLSNEGSSFSKMVQSTGAA 1478
T EELL+ G ++++ Q+ G A
Sbjct: 544 RGTHEELLAKGG-LYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-100
Identities = 111/204 (54%), Positives = 153/204 (75%), Gaps = 4/204 (1%)
Query: 615 ISIRNGYFSWDSKAER--PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
IS+ + F+WDS + TL +INL++P G LVAIVG G GK+SL+SA+LGEL +S
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 673 ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
+ +V G++AYV Q WI N T+R+NILFG F+ RYEK I +L+ DL++LP GD+T
Sbjct: 61 SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 791
EIGE+G+N+SGGQKQR+S+ARAVYS++D+++ DDPLSA+DAHVGR +F+ CI G L K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 792 TRVLVTNQLHFLSQVDRIILVHEG 815
TR+LVT+QL L D+I+++ G
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 312 bits (800), Expect = 1e-97
Identities = 126/225 (56%), Positives = 158/225 (70%), Gaps = 18/225 (8%)
Query: 1233 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 1292
WP G I+ E++ +RY P+LPPVL +SF + +K+GIVGRTGAGKS+++ LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1293 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 1352
E G+I IDG DI+ L DLR L IIPQ P LFSGT+R NLDPF E+SD +++ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
VSE G N S GQRQLL L+RALL+R ++LVLDEATA++D TDA
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1413 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457
LIQKTIREEF + T+L IAHRL TIID D+IL++D+G V EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = 1e-83
Identities = 183/651 (28%), Positives = 331/651 (50%), Gaps = 45/651 (6%)
Query: 225 QICPERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKE- 283
Q P +AN S++FF W P+++KGY + + D++++ ++D + L+ + ++ W +E
Sbjct: 2 QRSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDREL 61
Query: 284 -SQRPKPWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPA--WIG 340
S + P LL AL RF + G + ++ V PLLL +++ S I
Sbjct: 62 ASAKKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIA 121
Query: 341 YIYAFSI-FVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGK 399
Y A + + +V +L F + +G ++R L + +++K+L+++ ++G+
Sbjct: 122 YYLALGLCLLFIVRTLLLHPAIF-GLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQ 180
Query: 400 ITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTF 459
+ +L++ + + + H +W AP ++I+ + L++ L V G L+ + Q
Sbjct: 181 LVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240
Query: 460 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKA 519
+ +M + + +R+ + +EI+ + +VK Y WE + + ++N+R DEL RK
Sbjct: 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKI 300
Query: 520 QFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-MLPNMI 578
+L S V +S + L+ G + R FT++S VLR + P I
Sbjct: 301 AYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAI 359
Query: 579 TQVVNANVSLKRMEEFLLAEE-KILLPNPPLTSGLPAISIRNGYFSWDS-------KAER 630
++ ++ ++++FL EE K L N LT+ + + N SWD K ++
Sbjct: 360 QTWYDSLGAITKIQDFLCKEEYKTLEYN--LTT--TEVEMVNVTASWDEGIGELFEKIKQ 415
Query: 631 ------------------------PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 666
P L NI+ + G L+A+ G TG GK+SL+ ++GE
Sbjct: 416 NNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475
Query: 667 LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 726
L P S+ G +++ PQ SWI T++DNI+FG +++ RY I L+ D+ L
Sbjct: 476 LEP-SEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALF 534
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 786
P D T +GE G+ +SGGQ+ R+S+ARAVY ++D+++ D P + LD +++F+ C+
Sbjct: 535 PEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594
Query: 787 ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 837
+S KTR+LVT++L L + D+I+L+HEG+ GTF +L F L+
Sbjct: 595 LMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = 2e-78
Identities = 183/635 (28%), Positives = 317/635 (49%), Gaps = 48/635 (7%)
Query: 875 EASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 934
E S+ ++ K + E ++ RY L VLI L FL E
Sbjct: 826 EISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASL 885
Query: 935 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW----------------- 977
WL + + S V++T ++Y+
Sbjct: 886 LGLWLITDNPSAPNYVDQQ--HANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGF 943
Query: 978 -----LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 1032
L+ + L +KRLH+ MLHS+L+APM +T GRI+NRF KD+ ID + + +
Sbjct: 944 FRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL 1003
Query: 1033 NMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPV 1092
F+ +L ++ ++ A +P+ ++F Y+ T++++K+L+S RSP+
Sbjct: 1004 FDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPI 1063
Query: 1093 YAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 1152
++ +L GL TIRA+ + K+++ + + + RW +R++I+ +
Sbjct: 1064 FSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF-VFF 1122
Query: 1153 WLTATF-AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1211
++ TF A+ N E + +G++L+ A+NI S L + + + + +V RV
Sbjct: 1123 FIAVTFIAIGTNQDGEGE------VGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176
Query: 1212 NYIELPSEAP--------------LVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 1257
+I+LP E P LVIE+ WPS G + + + +Y VL
Sbjct: 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQ 1236
Query: 1258 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317
LSF++ +VG++GRTG+GKS++L+ L R++ E G I IDG L RK G
Sbjct: 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFG 1295
Query: 1318 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1377
+IPQ +FSGT R NLDP+ + SD ++W+ E LK I + LD + + G S
Sbjct: 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355
Query: 1378 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1437
G +QL+ L+R++L ++KIL+LDE +A +D T +I+KT+++ F +CT+++ HR+ +
Sbjct: 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415
Query: 1438 IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472
++C + L+++ V +YD+ ++LL NE S F + +
Sbjct: 1416 LECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 272 bits (699), Expect = 1e-77
Identities = 149/523 (28%), Positives = 251/523 (47%), Gaps = 44/523 (8%)
Query: 962 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 1021
L + + L+ L +Y + L +LR P+ +F +G II+R
Sbjct: 202 LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV---- 257
Query: 1022 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW------AIMPLL-LLFYAAYLYY 1074
++++ + + LL + + ++ S A +PL L+
Sbjct: 258 RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
Query: 1075 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM----ADINGKSMDKNIRYT 1130
+ R++ + + E + G+ T++A A R + K ++ +
Sbjct: 318 RRKTRKLIEESAEQ----QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 1131 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE-------AFASTMGLLLSYA 1183
+ + N ++ ++ L++W A + E AF G +S
Sbjct: 374 KLALILNTIKSLLQQLSSVLILWFGAILVL-------EGELTLGQLVAFNMLAGYFISPI 426
Query: 1184 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFED 1243
++ L T + A+ER+G+ ++ P E G I+FE+
Sbjct: 427 TRLSQLWTDFQQA-------KVALERLGDILDTPPE---QEGDKTLIHLPKLQGEIEFEN 476
Query: 1244 VVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 1303
V RY P+ PPVL LS IPP +KV IVGR+G+GKS++L L + + ++GRIL+DG D
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 1304 IAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNS 1362
+ L LR+ +G + Q P LFSG++R N+ + +D ++ EA + A + I
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1422
+G D V E G N S GQRQ L+L+RALL + KIL+LDEAT+A+D T+A+I + + +
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 1423 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+ T++IIAHRL+TI DRI++LD G+++E + EELL+ G
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699
|
Length = 709 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 253 bits (647), Expect = 3e-76
Identities = 119/238 (50%), Positives = 165/238 (69%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G IK D+ +RY L PVL + I P KVGI GRTG+GKSS+ FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1356
I+IDG DI+K L LR L II Q P+LFSG++RFNLDP + +D LWEALE A LK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
++ GLDA V+E GENFSVGQRQL L+RA +R+S IL++DEATA++D+ T+ ++QK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1417 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
+ F T++ IAHR++TI+D D +L+L G ++E DTPE LL+ E F+ +V++
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 2e-75
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G I+FE+V Y + P VL ++F+I P + V IVG TGAGK++++N L R + ++G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW-EALERAHLK 1355
ILIDG DI LR ++G++ Q LFSGT+ N+ ++ + EA + A
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
D I + G D + E G N S G+RQLL+++RA+LR KIL+LDEAT+ +D T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1416 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+ + + K T +IIAHRL+TI + D+IL+LD G+++E T +ELL+ +G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 6e-70
Identities = 143/557 (25%), Positives = 261/557 (46%), Gaps = 29/557 (5%)
Query: 302 RFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQY 361
+ + L + PLL+ +++ ++ D + + + + ++ GVL +
Sbjct: 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLL-LLLALLGGVL---RA 70
Query: 362 FQNV--MRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQ-VCQAL 418
Q+ R+G ++ + L +F K LR+ SG + + +T D E + V L
Sbjct: 71 LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130
Query: 419 HTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKR 478
++++ +I SLVLL++ +L+ L+L + V + + + +KL++ + +
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 479 IGLMNEILAAMDAVKCYAWE----NSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP 534
+ E L+ + +K + E F+ + +R L R LA + +
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL-- 248
Query: 535 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEF 594
V V++ G F +L G LT + L P+ L +++ + A+ + +R+ E
Sbjct: 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFEL 308
Query: 595 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 654
L E ++ P PL + +I N FS+ K +P L +I+ I G VAIVG +G
Sbjct: 309 LDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEPGEKVAIVGPSGS 366
Query: 655 GKTSLISAMLGELPPVS--------DASAVI----RGTVAYVPQVSWIFNATVRDNILFG 702
GK++LI +L P S D + R + V Q +F+ T+R+NI G
Sbjct: 367 GKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALG 426
Query: 703 SA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
E+A+ + + + LP G T +GERGVN+SGGQ+QR+++ARA+ N +
Sbjct: 427 RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486
Query: 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821
I D+ SALD + D ++ L G+T +++ ++L + DRII++ G + E G
Sbjct: 487 LILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545
Query: 822 TFEDLSNNGELFQKLME 838
T E+L G L+ +L +
Sbjct: 546 THEELLAKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 3e-65
Identities = 85/212 (40%), Positives = 117/212 (55%), Gaps = 41/212 (19%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+F++V Y PVL +S TI P +KV IVG +G+GKS++L L R+ + G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358
IDG D+ L LRK + +PQ P LFSGT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
S GQRQ ++++RALLR IL+LDEAT+A+D T+ALI + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1419 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 1450
R K T+++IAHRL+TI D DRI++LD GR
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 4e-65
Identities = 88/230 (38%), Positives = 142/230 (61%), Gaps = 5/230 (2%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++F++V RY + PPVL +S IP + V +VG +G+GKS+++N + R +++ GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1355
IDG D+ + L LR+ +G++ Q LF+ TV N+ P + ++ EA A+
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP--GATREEVEEAARAANAH 118
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
+ I G D + E G S GQRQ ++++RALL+ IL+LDEAT+A+D ++ L+Q
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 1416 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+ K+ T +IAHRL+TI + DRI++L+ G+++E T EELL+ G
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 3e-64
Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+FE+V Y P P VL +SFTIP KV IVG +G+GKS++L LFR ++ G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1355
IDG DI + L LR+ +G++PQ VLF+ T+ +N+ P + +D ++ EA + A +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
D I R G D V E G S G++Q ++++RA+L+ IL+LDEAT+A+D T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1416 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
+R+ K T ++IAHRL+TI++ D+I++L GR++E T EELL +G +++M
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-59
Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 52/472 (11%)
Query: 1034 MFMGQVSQL-------LSTFVLIGIVSTMSLWAI--------------MPLLLLFYAAYL 1072
+ + + QL L L IV + L AI PL+ LF +
Sbjct: 102 LALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL-V 160
Query: 1073 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD-INGKSMD------K 1125
+ K+ ++ R + F + L GL T+RA+ + + I S D
Sbjct: 161 GLAAKDASEKQFSALAR--LSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMS 218
Query: 1126 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 1185
+R ++ LE L I L A + + + FA L+L+
Sbjct: 219 VLRIAFLSSAV-------LEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILA---- 267
Query: 1186 ITSLLTAVLRLASL---AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 1242
+ L S A A +++ +E P P + I E
Sbjct: 268 -PEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG--SGEKAEVANEPPIEISLE 324
Query: 1243 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 1302
++ RY P+ P L L+ TI +VG +GAGKS++LN L + +G I ++G
Sbjct: 325 NLSFRY-PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI 383
Query: 1303 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRN 1361
D+ RK + + Q+P LF+GT+R N+ + SD ++ AL++A L + + +
Sbjct: 384 DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP 443
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1421
GLD + E G S GQ Q L+L+RALL + +L+LDE TA +D T+ +I + ++E
Sbjct: 444 -DGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502
Query: 1422 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473
K T+L+I HRL D DRI++LD+GR++E T EEL +G ++ +++
Sbjct: 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG-LYANLLK 553
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 5e-57
Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G I+F +V Y + P L +S TI +KV I+GR G+GKS++L L + + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 1353
+L+DG DI + DLR+ +G +PQ LF GT+R N+ P D + A E A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
+ D + ++ GLD Q+ E G S GQRQ ++L+RALL IL+LDE T+A+D+ ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1451
+++ +R+ T++II HR + + DRI+++DSGR+
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 7e-57
Identities = 98/220 (44%), Positives = 128/220 (58%), Gaps = 20/220 (9%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL------- 667
+ + NGYFSW S TL NIN+ IP G L IVG G GK+SL+ A+LGE+
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 668 ---------PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 718
P + R +VAY Q W+ NATV +NI FGS F RY+ D S
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 719 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
LQ D+DLLP GD TEIGERG+N+SGGQ+QR+ +ARA+Y N+++ DDP SALD H+
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 779 VFDRCIRGELSG--KTRVLVTNQLHFLSQVDRIILVHEGM 816
+ I L +T VLVT++L +L D II + +G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 1e-56
Identities = 137/507 (27%), Positives = 240/507 (47%), Gaps = 38/507 (7%)
Query: 975 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 1034
+Y L S + + M +L P+ FF P G +++R D + + +
Sbjct: 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQV---ASAATDA 131
Query: 1035 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 1094
F+ V + L+ L ++ S W + ++++ KRL I++ +
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYS-WQLTLIVVVMLPVLSILMRRVS--KRLRRISKEIQNS 188
Query: 1095 Q------FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG 1148
E L G ++ + R+ V+ NR LA+++ G
Sbjct: 189 MGQVTTVAEETLQGYRVVKLFGGQAYETR----------RFDAVS-NRNRRLAMKMTSAG 237
Query: 1149 GL---MIWLTATFAVVQNGSAENQEAFAS--TMGLLLSYALNITSLLTAVLRLASLA--- 1200
+ + L A+ A+ +A A T G ++ + +L+ + L ++
Sbjct: 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPM 297
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1260
+ L A E + ++ P E R + G ++F +V RY P L +S
Sbjct: 298 QRGLAAAESLFTLLDSPPEKD---TGTRAIE--RARGDVEFRNVTFRYPGRDRPALDSIS 352
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
I P + V +VGR+G+GKS+++N + R E + G+IL+DG D+A + L LR+ + ++
Sbjct: 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412
Query: 1321 QSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1378
Q VLF+ T+ N+ + A++ AL A+ +D + + LGLD + E G S
Sbjct: 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472
Query: 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1438
GQRQ L+++RALL+ + IL+LDEAT+A+D ++ L+Q + + T L+IAHRL+TI
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE 532
Query: 1439 DCDRILLLDSGRVLEYDTPEELLSNEG 1465
DRI+++D GR++E T ELL+ G
Sbjct: 533 KADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 2e-56
Identities = 100/242 (41%), Positives = 156/242 (64%), Gaps = 13/242 (5%)
Query: 1239 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
I+F++V RY RP++P +L GLS TIPP V +VG +G GKS++++ L R + G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 1353
IL+DG DI L LR +G++ Q PVLF GT+ N+ P + +D ++ EA ++A+
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKAN 117
Query: 1354 LKDAIRRNSL--GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+ D I SL G D V E G S GQ+Q ++++RALLR KIL+LDEAT+A+D ++
Sbjct: 118 IHDFI--MSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
L+Q+ + K T ++IAHRL+TI + D I +L +G+V+E T +EL++ +G ++K+
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKL 234
Query: 1472 VQ 1473
V+
Sbjct: 235 VK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 8e-56
Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 32/476 (6%)
Query: 1011 GRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVL--IGIVSTMSLWAIMPLL 1064
G ++NR D+ +D R +A V V + T L I + L I+ LL
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVAL---VLIAVVTIGLSFFSIPLALLLGLILLLL 171
Query: 1065 LLFY--AAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 1122
LL Y + + R+ + +QF + + G + + + A D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLA----QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 1123 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 1182
++ L ++ GL++ + + A + + LL+ +
Sbjct: 228 EASWLKAQRKQARFTGLSDAILLLIAGLLV-IGLLLWMAAQVGAGALAQPGAALALLVIF 286
Query: 1183 ALNITSLLTAVLRLASLA----ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 1238
A L A LA A + + R+ ++ + P V + + +
Sbjct: 287 AA-----LEAFEPLAPGAFQHLGQVIASARRLN---DILDQKPEVTFPDEQTA--TTGQA 336
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ +V Y + L + T+ +KV I+GR+G+GKS++L L + ++G I
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDA 1357
++G +IA LR+ + ++ Q LFSGT+R NL + SD +LW AL++ L+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
+ GL+ + E G S G+R+ L+L+RALL + + +LDE T +D T+ +
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 1418 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473
+ E + T+L++ HRL + DRI++LD+G+++E T ELL+N G + ++ Q
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG-RYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 6e-55
Identities = 139/499 (27%), Positives = 250/499 (50%), Gaps = 44/499 (8%)
Query: 993 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 1052
+ +L P+ +F + +G + R ++L I RN + V LL V + ++
Sbjct: 218 LYRHLLGLPLGYFESRRVGDTVAR-VRELEQI-RNF--LTGSALTVVLDLLFVVVFLAVM 273
Query: 1053 ---STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQ--FGEALNGLSTIR 1107
S ++ L+ + ++ R KR++ A E++ G+ TI+
Sbjct: 274 FFYSPTLTGVVIGSLVCYALLSVFVGPILR--KRVEDKFERSAAATSFLVESVTGIETIK 331
Query: 1108 AYKAYDRMADINGKSMDKNIR--YTLVNMGANRWLAIRL--EIVGGLMIWLTATFAVVQN 1163
A + + + + + + + N+G AI L ++ +++W A +V
Sbjct: 332 ATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAH--LVIG 389
Query: 1164 GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSE- 1219
G+ + G L+++ + + VLRLA L ++ + A+ER+G+ + P+E
Sbjct: 390 GAL--------SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441
Query: 1220 --APLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 1277
A L G+I FE++ RY P+ P VL L+ I P + +GIVG +G+
Sbjct: 442 RSAGLAALPEL-------RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494
Query: 1278 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 1334
GKS++ L R+ + G++L+DG D+A LR+ +G++ Q VLFS ++R N+
Sbjct: 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC 554
Query: 1335 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394
+P + A + A D I G + +V E G N S GQRQ ++++RAL+
Sbjct: 555 NP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 1395 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1454
+IL+ DEAT+A+D ++ALI + +RE + T++IIAHRL+T+ CDRI++L+ G++ E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 1455 DTPEELLSNEGSSFSKMVQ 1473
EELL+ ++++ Q
Sbjct: 673 GRHEELLA-LQGLYARLWQ 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-54
Identities = 159/603 (26%), Positives = 283/603 (46%), Gaps = 66/603 (10%)
Query: 892 QEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL------RVSSSTWLSYWTDQ 945
Q + ET + F++L L + L L E RV L D+
Sbjct: 140 QGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVID--TLG--GDK 195
Query: 946 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 1005
+F+ + S+ S V L + + R+ + + S+LR + FF
Sbjct: 196 GPPALASAIFFMCLLSIASS--VSAGLRGGSFNYTMARINL-RIREDLFRSLLRQDLGFF 252
Query: 1006 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAIMP 1062
N G + +R + D + R++++ VN+ + + LL + +S TM +P
Sbjct: 253 DENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312
Query: 1063 LLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA-----------YK 1110
L+ L + YQ + E++ +++ ++ A+ EAL+G+ T+R+ +
Sbjct: 313 LVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKE 368
Query: 1111 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 1170
A + +N + Y ++G L+ V+ G Q
Sbjct: 369 ALEETLQLNKRKALAYAGYLWTT-----------SVLGMLIQ-----VLVLYYGG---QL 409
Query: 1171 AFASTM--GLLLSYALNITSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVIE 1225
+ G L+S+ L L AV L+ + + AV E+V Y++ PL
Sbjct: 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT 469
Query: 1226 SNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 1283
P G I+F+DV Y RP++P VL GL+FT+ P + V +VG +G+GKS++
Sbjct: 470 -LAPLN---LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVA 524
Query: 1284 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSD 1342
L + + G++L+DG + ++ L + + ++ Q PVLFSG+VR N+ ++ D
Sbjct: 525 ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD 584
Query: 1343 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1402
++ A + A+ D I G D +V E G S GQ+Q ++++RAL+R+ ++L+LDEA
Sbjct: 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644
Query: 1403 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462
T+A+D + L+Q++ S T+L+IAHRL+T+ D+IL+L G V+E T ++L+
Sbjct: 645 TSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702
Query: 1463 NEG 1465
++G
Sbjct: 703 DQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 1e-53
Identities = 110/381 (28%), Positives = 192/381 (50%), Gaps = 37/381 (9%)
Query: 1098 EALNGLSTIRAYKAYDRMA----DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 1153
E+L+GL TI+A A R ++ ++ A + ++V ++
Sbjct: 329 ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV- 387
Query: 1154 LTATFAVVQNGSAENQEAFASTMG------LLLSYAL----NITSLLTAVLRLASLAENS 1203
+ + + ++ + TMG +L AL + LLT R + +
Sbjct: 388 VVGVYLI-----SDGE----LTMGGLIACVMLSGRALAPLGQLAGLLT---RY----QQA 431
Query: 1204 LNAVERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFT 1262
A++ + ++LP E P P G I+F +V Y + P L +S T
Sbjct: 432 KTALQSLDELMQLPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLT 487
Query: 1263 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 1322
I P +KV I+GR G+GKS++L L + + G +L+DG DI + DLR+ +G +PQ
Sbjct: 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQD 547
Query: 1323 PVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381
P LF GT+R N+ + + D ++ A E A + + +RR+ GLD Q+ E G + S GQR
Sbjct: 548 PRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607
Query: 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1441
Q ++L+RALLR IL+LDE T+A+D R++ + ++ T++++ HR + + D
Sbjct: 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667
Query: 1442 RILLLDSGRVLEYDTPEELLS 1462
RI+++D+GR++ +++L
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 3e-53
Identities = 143/481 (29%), Positives = 237/481 (49%), Gaps = 41/481 (8%)
Query: 1004 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAI 1060
FF N G +++R D + + ++M + + +++ I S T +
Sbjct: 108 FFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 1061 MPLLLLFYAAYLYYQSTAREVKRL-----DSITRSPVYAQFGEALNGLSTIRAYKAYDRM 1115
+PL+LL + R V++L D I + YA GE L + T++A+ D
Sbjct: 168 VPLVLLPILLF------GRRVRKLSRESQDRIADAGSYA--GETLGAIRTVQAFGHEDAE 219
Query: 1116 ADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGG---LMIWLTATFAVVQNGSAENQEA 1171
G +++K + L AI + +V G ++W+ A V G
Sbjct: 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH--DVIAGKMS---- 273
Query: 1172 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-- 1229
A T+G + YA+ + + + + + + A ER+ IEL P + P
Sbjct: 274 -AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL---IELLQAEPDIKAPAHPKT 329
Query: 1230 PPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 1287
P P G I+FE V Y RP+ P L GL+ T+ P + V +VG +GAGKS++ L
Sbjct: 330 LPV-PLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL 387
Query: 1288 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDAD 1344
R + + GRIL+DG D+ + +LR + ++PQ PVLF+ +V N+ P + +D +
Sbjct: 388 RFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEE 445
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
+ A AH + I G D + E G S GQRQ ++++RA+L+ + IL+LDEAT+
Sbjct: 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505
Query: 1405 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
A+D ++ L+Q+ + K T LIIAHRL T++ DRI+++D GR++ T EL++
Sbjct: 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565
Query: 1465 G 1465
G
Sbjct: 566 G 566
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 4e-53
Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 3/245 (1%)
Query: 1223 VIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 1281
V ++ PP WP G++ F +V Y P P+L+G+SFTIP V IVG +GAGKS+
Sbjct: 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 1282 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH- 1340
+L LFR ++ G I IDG DI LR+ +GI+PQ VLF+ T+ +N+
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364
Query: 1341 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400
+ ++ A E A + D I+ G D V E G S G++Q ++++R +L+ IL+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424
Query: 1401 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1460
EAT+A+D T+ IQ +RE T L+IAHRL+TIID D I++LD+GR++E T EEL
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484
Query: 1461 LSNEG 1465
L+ G
Sbjct: 485 LAAGG 489
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 2e-52
Identities = 85/230 (36%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I FE V RY+P+ P +L +S I P + VGIVGR+G+GKS++ + R E GR+L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA- 1357
+DG D+A LR+ +G++ Q VLF+ ++R N+ + +E A L A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA--LADPGMSMERVIEAAKLAGAH 118
Query: 1358 --IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
I G D V E G S GQRQ ++++RAL+ +IL+ DEAT+A+D ++ I
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1416 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+ + + T++IIAHRL+T+ + DRI++++ GR++E + +ELL+ G
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 3e-52
Identities = 83/234 (35%), Positives = 138/234 (58%), Gaps = 5/234 (2%)
Query: 619 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR 678
N +FS P L NINL I G ++AI G TG GKTSL+ +LGEL P + I+
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP---SEGKIK 95
Query: 679 --GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 736
G +++ Q SWI T+++NI+FG +++ RY+ + L+ D+ P D T +GE
Sbjct: 96 HSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 737 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 796
G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LV
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 797 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 850
T+++ L + D+I+++HEG GTF +L + F + +++ E+
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAER 269
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 5e-52
Identities = 88/239 (36%), Positives = 146/239 (61%), Gaps = 2/239 (0%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G + +D+ +Y VL +SF+I P +VG++GRTG+GKS++L+ R++ E G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1356
I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ E LK
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
I + LD + + G S G +QL+ L+R++L ++KIL+LDE +A +D T +I+K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1417 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1475
T+++ F CT+++ HR+ +++C R L+++ +V +YD+ ++LL NE S F + + +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAISPS 237
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 6e-52
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 7/257 (2%)
Query: 1228 RPPPGWPS----SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 1283
R PPG G+++F+DV Y + +SF P V IVG TGAGKS+++
Sbjct: 320 RDPPGAIDLGRVKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI 378
Query: 1284 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SD 1342
N L R+ + + GRILIDG DI LR+ + ++ Q LF+ ++ N+ +D
Sbjct: 379 NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438
Query: 1343 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1402
++ A ERA D I R G D V E G S G+RQ L+++RALL+ IL+LDEA
Sbjct: 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 1403 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462
T+A+DV T+A ++ + E K T IIAHRL+T+ + DRIL+ D+GRV+E + +E L
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE-LV 557
Query: 1463 NEGSSFSKMVQSTGAAN 1479
G F+ ++++ G
Sbjct: 558 ARGGRFAALLRAQGMLQ 574
|
Length = 588 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 1e-51
Identities = 130/548 (23%), Positives = 250/548 (45%), Gaps = 31/548 (5%)
Query: 315 LSQFVGPLLLNQLLQS-MQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ-YFQNVMRVGFRL 372
L PL ++ + + + + + + +L + Y + G RL
Sbjct: 168 LLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHL--GKRL 225
Query: 373 RSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC--QALHTLWSAPFRIII 430
L FR LR+ + + G+I + + + EQ+++ L + F +I
Sbjct: 226 DLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIF 284
Query: 431 SLVLLYNELGVASLLGALLLVFMFPVQTFIISR-MQKLTKEGLQRTDKRIGLMNEILAAM 489
V+ + ++ A + + + T I +++ T++ ++ + ++ + E + +
Sbjct: 285 LAVMFLYSWKLTLIVLAAIPLNVLI--TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGI 342
Query: 490 DAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSFGMFTL 547
+ VK A E F+S+ N +++ K + LA + I + + L V ++ FG +
Sbjct: 343 ETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILV 402
Query: 548 LGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLA--EEKILLPN 605
L G+LT + L P+ L + T A V+L+R+ + L E++
Sbjct: 403 LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTL 462
Query: 606 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 665
L I N F + + P L +++L+IP G VAIVG +G GK++L+ +LG
Sbjct: 463 IHLPKLQGEIEFENVSFRYG-PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521
Query: 666 ELPP-----------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAF--EPARYE 711
P ++D A +R V YV Q ++F+ ++R+NI G+ + E
Sbjct: 522 LYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIE 581
Query: 712 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 771
A + ++ LP G T +GE G N+SGGQ+QR+++ARA+ S + + D+ SAL
Sbjct: 582 -AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSAL 640
Query: 772 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 831
D + + L G+T +++ ++L + DRII++ +G + E+G+ E+L G
Sbjct: 641 DPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699
Query: 832 LFQKLMEN 839
L+ +L +
Sbjct: 700 LYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 3e-50
Identities = 146/545 (26%), Positives = 249/545 (45%), Gaps = 97/545 (17%)
Query: 964 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGD 1023
+ G LA S ++ L A+ +LR P+ FF G + +R
Sbjct: 186 AVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA------ 239
Query: 1024 IDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFY--------------- 1068
M + Q+ ++LS L ++S ++A++ L L+FY
Sbjct: 240 ----------MGISQIRRILSGSTLTTLLS--GIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 1069 -------AAY--LYYQSTAREVK-RLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAD 1117
+ + E+ ++ +T + +NG+S +R A +R A
Sbjct: 288 AIAVTLVLGLLQVRKERRLLELSGKISGLT--------VQLINGISKLRVAGAENRAFAR 339
Query: 1118 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 1177
R L + + + L+ A V+ + + FA+ +
Sbjct: 340 WAK------------LFSRQRKLELSAQRIENLLTVFNAVLPVLTSAAL-----FAAAIS 382
Query: 1178 LLLSYALNI----------TSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVI 1224
LL L++ S AV +L++ + L + ER +E E +
Sbjct: 383 LLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE----V 438
Query: 1225 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 1284
+ + PG SG+I+ + V RYRP+ P +L +S I P + V IVG +G+GKS
Sbjct: 439 DEAKTDPG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKS---- 493
Query: 1285 TLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 1340
TL R++ E G + DG D+A + +R+ LG++ Q+ L SG++ N+ +
Sbjct: 494 TLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553
Query: 1341 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400
+ + WEA A L + IR +G+ +SE G S GQRQ L ++RAL+R+ +IL+ D
Sbjct: 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613
Query: 1401 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1460
EAT+A+D RT A++ +++ E T ++IAHRL+TI + DRI +LD+GRV++ T +EL
Sbjct: 614 EATSALDNRTQAIVSESL--ERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671
Query: 1461 LSNEG 1465
++ EG
Sbjct: 672 MAREG 676
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 7e-50
Identities = 145/499 (29%), Positives = 229/499 (45%), Gaps = 54/499 (10%)
Query: 993 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ-VSQLLSTFVLIGI 1051
L ILR P+ FF G I +R ++ VA F++ GQ + L +L+
Sbjct: 233 FLWHILRLPVRFFAQRHAGDIASRV-----QLNDQVAEFLS---GQLATTALDAVMLVFY 284
Query: 1052 VSTMSLW-AIMPLLLLFYAA----YLYYQSTARE--VKRLDSITRSPVYAQFGEALNGLS 1104
M L+ ++ L+ + +AA L S R +RL + G A++GL
Sbjct: 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQ-DAGKLT---GVAISGLQ 340
Query: 1105 TIRAYKAYDRMADINGKSMDKNIRYTLVNMG-----ANRWLAIRLEIVGGL--MIWLTAT 1157
+I KA +D + + L+N + L + ++ L + L
Sbjct: 341 SIETLKASGLESDFFSRW--AGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVG 398
Query: 1158 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA------ENSLNAVERVG 1211
V G T+G+L+++ ++S L V L E LN ++ V
Sbjct: 399 GLRVMEGQL--------TIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 1212 NYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGI 1271
P + P SG ++ ++ Y P PP++ S T+ P +V +
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVAL 510
Query: 1272 VGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 1327
VG +G+GKS T+ ++V + G IL DG + L + ++ Q LF
Sbjct: 511 VGGSGSGKS----TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE 566
Query: 1328 GTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1386
GTVR NL + DADL A + A + D I G DA+++E G N S GQRQ L +
Sbjct: 567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626
Query: 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1446
+RAL+R IL+LDEAT+A+D T+ +I +R + CT +I+AHRL+TI DCD I++L
Sbjct: 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVL 684
Query: 1447 DSGRVLEYDTPEELLSNEG 1465
+ G+V++ T EEL + G
Sbjct: 685 ERGKVVQRGTHEELWAVGG 703
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 1e-49
Identities = 140/570 (24%), Positives = 262/570 (45%), Gaps = 47/570 (8%)
Query: 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFG-------QVL 969
+++ +++ + + ++ S +L Q + T+ P ++S G Q +
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYL-----QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQI 211
Query: 970 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA 1029
++ + L + + + + + + PM FF T G I++RF ID +
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALAS 271
Query: 1030 VFVNMFMGQVSQLLSTFVLIGIV---STMSLWAIMPLLLLFYAAYLY-----YQSTAREV 1081
+++F+ + V++G+ M L+ + L + YA + + +
Sbjct: 272 TILSLFLD-----MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDA 326
Query: 1082 KRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGAN 1137
+ +++ S + E LNG+ TI++ + Y ++ G ++K+ +Y + G
Sbjct: 327 MQANAVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382
Query: 1138 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 1197
A+ I+ +++W A + + F + + L+ NI +L L+ A
Sbjct: 383 AIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPK-LQAA 441
Query: 1198 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 1257
+A N LN V V SE I + +G I DV Y +L
Sbjct: 442 RVANNRLNEVYLV------DSE---FINKKKRTELNNLNGDIVINDVSYSYGYG-SNILS 491
Query: 1258 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317
+S TI + K IVG +G+GKS++ L + G IL++GF + LR+ +
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 1318 IIPQSPVLFSGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375
+PQ P +FSG++ NL ++ S ++W A E A +KD I LG ++SE G +
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611
Query: 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1435
S GQ+Q ++L+RALL SK+L+LDE+T+ +D T+ I + + T++ +AHRL+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NLQDKTIIFVAHRLS 670
Query: 1436 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
D+I++LD G+++E + +ELL G
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 5e-49
Identities = 162/571 (28%), Positives = 272/571 (47%), Gaps = 82/571 (14%)
Query: 933 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS---YWLIISSLYAA--- 986
VS +SY+ D K + PL + + L+ V + L + Y + AA
Sbjct: 40 VSGPLLISYFIDNMVAKGNLPL---GLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96
Query: 987 -KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 1045
++L ++ + LR P+ F T P+G++I+R D V ++++ V+ +L +
Sbjct: 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTND-------TEVIRDLYVTVVATVLRS 149
Query: 1046 FVLIG--IVSTMSL-W-------AIMPLLLLFYAAYLYYQST--AREVKR-LDSITRSPV 1092
LIG +V+ SL W I P +L+ Y Y ST R V+ L I
Sbjct: 150 AALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY-STPIVRRVRAYLADINDG-- 206
Query: 1093 YAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIR--YTLVNMGANRWLAIRLE----- 1145
F E +NG+S I+ ++ R G+ M + R Y R +RL+
Sbjct: 207 ---FNEVINGMSVIQQFRQQARF----GERMGEASRSHYM------ARMQTLRLDGFLLR 253
Query: 1146 ---------IVGGLMIWLTATFAVVQNGSAENQ--EAFASTMGLLLSYALNITSLLTAVL 1194
I+ GL++ F +G+ E AF S +G L + +T+
Sbjct: 254 PLLSLFSALILCGLLM----LFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQ----- 304
Query: 1195 RLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPP 1254
S+ + ++ A ERV ++ P + +RP SG I ++V YR +
Sbjct: 305 --QSMLQQAVVAGERVFELMDGPRQQ--YGNDDRPL----QSGRIDIDNVSFAYRDD-NL 355
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
VL ++ ++P V +VG TG+GKS++ + L L G I +DG ++ LR+
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415
Query: 1315 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374
+ ++ Q PV+ + T N+ + S+ +W+ALE L + R GL + E G
Sbjct: 416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475
Query: 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1434
N SVGQ+QLL+L+R L++ +IL+LDEATA +D T+ IQ+ + + T+++IAHRL
Sbjct: 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRL 535
Query: 1435 NTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+TI++ D IL+L G+ +E T ++LL+ +G
Sbjct: 536 STIVEADTILVLHRGQAVEQGTHQQLLAAQG 566
|
Length = 592 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 3e-48
Identities = 132/560 (23%), Positives = 225/560 (40%), Gaps = 69/560 (12%)
Query: 315 LSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSI--FVGVVLGVLCEAQYFQNVMRVGFRL 372
L+ + L+ QL QS + + I + L L E ++ +V L
Sbjct: 23 LADILTKLIEGQLFQS-------LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASL 75
Query: 373 RSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQ-----VCQALHTLWSAPFR 427
R ++ + + +G L EQL+ + Q + P
Sbjct: 76 RQLVLDKLAKLGPA----FIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAI-VPLL 130
Query: 428 IIISLVLLYNELGVASLLGALLLVFMFPVQTFIISR------MQKLTKEGLQRTDKRIGL 481
I+I+ + +N LL L+ +F + + ++ L + D+ GL
Sbjct: 131 ILIA-IFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGL 189
Query: 482 MNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKA-------QFLAACNSFILN--- 531
E L A + E + ++ FRKA FL +S +L
Sbjct: 190 --ETLRAFGRTEAT--EERIRKDSED--------FRKATMSVLRIAFL---SSAVLEFFA 234
Query: 532 SIPVLVTVVSFGMFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 590
+ + + V G F LLG GDLT L L PL L + + +
Sbjct: 235 YLSIALVAVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADK 293
Query: 591 MEEFLLAEEKILLPN-PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIV 649
+ L + + P I I S+ +P L ++NL I G L A+V
Sbjct: 294 LFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALV 353
Query: 650 GGTGEGKTSLISAMLGELPP------VSDAS------AVIRGTVAYVPQVSWIFNATVRD 697
G +G GK++L++ +LG L P V+ R +++V Q ++F T+R+
Sbjct: 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE 413
Query: 698 NILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 756
NIL A+D L + G D T IGE G +SGGQ QR+++ARA+
Sbjct: 414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLD-TVIGEGGAGLSGGQAQRLALARALL 472
Query: 757 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 816
S + + + D+P + LDA + + + ++ KT +++T++L + DRI+++ G
Sbjct: 473 SPASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGR 531
Query: 817 VKEEGTFEDLSNNGELFQKL 836
+ E+GT E+LS L+ L
Sbjct: 532 LVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-47
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 6/231 (2%)
Query: 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 1278
+A + + P + S++F V + Y P P L +SFT+PP ++V +VG +GAG
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAG 360
Query: 1279 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---D 1335
KS++LN L V+ G I ++G +A R + +PQ P LF+GT+ N+
Sbjct: 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420
Query: 1336 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395
P + SDA++ EALERA L + + GLD + E G S GQ Q L+L+RA LR +
Sbjct: 421 P--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 1396 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1446
+L+LDE TA +D T+A + + +R + T+L++ HRL DRI++L
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 1e-46
Identities = 127/529 (24%), Positives = 223/529 (42%), Gaps = 63/529 (11%)
Query: 323 LLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNV------MRVGFRLRSTL 376
LL +++ + G + A V+L + Q V +LR L
Sbjct: 25 LLARVVDGLISAGEPLAELLPALGALALVLLLRALLG-WLQERAAARAAAAVKSQLRERL 83
Query: 377 VAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQ-VCQALHTLWSAPFRIIISLVLL 435
+ AV R SG++ L E L + L L A +I+ L +L
Sbjct: 84 LEAVAALGPRWLQGRP----SGELATLALEGVEALDGYFARYLPQLVLA---VIVPLAIL 136
Query: 436 YNELGVASLLGALLLVFMFP-VQTFII---SRMQKLTKEGLQRTDKRIGLMNEILAAMDA 491
+ + L+L+ P + F+I Q ++ + G + L +
Sbjct: 137 A-AVFPQDWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPT 195
Query: 492 VKCYAWENSFQSKV----QNVRNDELSWFRKAQFLAACNSFILN---SIPVLVTVVSFGM 544
+K + + + + + R + R A FL+ S +L ++ V + V G
Sbjct: 196 LKLFGRAKAQAAAIRRSSEEYRERTMRVLRIA-FLS---SAVLELFATLSVALVAVYIG- 250
Query: 545 FTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQV-------VNANVSLKRMEEFLLA 597
F LL GDL A F +L P F LP + Q+ + + + + L A
Sbjct: 251 FRLLAGDLDLATGL-----FVLLLAPEFYLP--LRQLGAQYHARADGVAAAEALFAVLDA 303
Query: 598 EEKILLPNPPLTSG-LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGK 656
+ L P+T+ P++ ++ + RP L ++ +P G VA+VG +G GK
Sbjct: 304 APRPLAGKAPVTAAPAPSLEFSGVSVAYPGR--RPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 657 TSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFG-S 703
++L++ +LG + P + AV R +A+VPQ ++F T+ +NI
Sbjct: 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP 421
Query: 704 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 763
A +A++ L + LP G T IGE G +SGGQ QR+++ARA ++ + +
Sbjct: 422 DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481
Query: 764 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 812
D+P + LDA +V + +R G+T +LVT++L + DRI+++
Sbjct: 482 LDEPTAHLDAETEAEVLEA-LRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 5e-46
Identities = 89/231 (38%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G I+F +V Y + P L ++F IP V +VGR+G+GKS++ N L R +++ G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHL 1354
IL+DG D+ + L LR + ++ Q+ LF+ T+ N+ +S + EA A+
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1415 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
Q + E K+ T L+IAHRL+TI D IL+++ G ++E T ELL+ G
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 75/218 (34%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 1237 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
G +KF++V Y RP+ VL +SFT+ P + +VG +G+GKS+++ L + +
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 1295 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAH 1353
G++L+DG I+++ L + ++ Q PVLF+ +++ N+ S + EA ++AH
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
I + G D +V E G S GQ+Q ++++RAL+R ++L+LDEAT+A+D ++
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1451
+Q+ + + + T+L+IAHRL+T+ D+IL+LD GR+
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 1e-43
Identities = 131/507 (25%), Positives = 228/507 (44%), Gaps = 60/507 (11%)
Query: 348 FVGVVLGVLCEAQYFQNVMRVGFRLRSTLV------------AAVFRKSLRITHEARKNF 395
+GV L ++ + V++ LRS + A +F + L + EAR
Sbjct: 190 AIGVALAIVFDF-----VLKT---LRSYFLDVAGKKADLILSAKLFERVLGLRMEARPAS 241
Query: 396 ASGKITNLMTTDAEQLQQV-----CQALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 450
L + + V L L PF ++ L+++ G + + +
Sbjct: 242 VGSFANQL-----REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLVAI 295
Query: 451 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRN 510
+ + + +L +E ++ + +R ++ E L+ ++ +K E FQ + +
Sbjct: 296 PLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVA 355
Query: 511 DELSWFRKAQFLAACNSFILNSIPVLVTV--VSFGMFTLLGGDLTPAR--AFTSLSLFAV 566
K++FL+ + I LV+V V G++ + G+LT A LS A+
Sbjct: 356 ALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRAL 415
Query: 567 LRFPLFMLPNMITQVVNANVSLKRMEEFLLAE-----EKILLPNPPLTSGLPAISIRNGY 621
PL L ++T+ A +L+ ++E + L P L G I RN
Sbjct: 416 A--PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRL-QG--EIEFRNVS 470
Query: 622 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-------- 673
F++ E P L N++L I G VAI+G G GK++L+ +LG P +
Sbjct: 471 FAY-PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529
Query: 674 ----SAVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPG 728
A +R + YVPQ +F T+RDNI G+ + + +A ++ + + P
Sbjct: 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPD 589
Query: 729 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 788
G +IGERG ++SGGQ+Q V++ARA+ + + + D+P SA+D + DR ++ L
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWL 648
Query: 789 SGKTRVLVTNQLHFLSQVDRIILVHEG 815
+GKT VLVT++ L VDRII++ G
Sbjct: 649 AGKTLVLVTHRTSLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 5e-42
Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 3/242 (1%)
Query: 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295
G+++F + + + +SF V IVG TGAGK++++N L R+ + G
Sbjct: 332 KGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390
Query: 1296 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHL 1354
+ILIDG DI LRK + + Q LF+ ++R N+ E +D +++EA + A
Sbjct: 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAA 450
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
D I + S G D V E G S G+RQ L+++RA+L+ + ILVLDEAT+A+DV T+A +
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510
Query: 1415 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
+ I K+ T IIAHRL+T+ + D +L LD GR++E + +E L + F K+++
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE-LIQKDGRFYKLLRR 569
Query: 1475 TG 1476
+G
Sbjct: 570 SG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 6e-42
Identities = 91/308 (29%), Positives = 161/308 (52%), Gaps = 3/308 (0%)
Query: 291 LLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAW-IGYIYAFSIFV 349
LLR L ++L WW +K+ +D+ P+LL ++ + D W G ++F+
Sbjct: 234 LLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFL 293
Query: 350 GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHE--ARKNFASGKITNLMTTD 407
++ +C +++ +R G + RS L A +F K I+ + A+ + +G+I N+M+TD
Sbjct: 294 TQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTD 353
Query: 408 AEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKL 467
E++ Q LWS+P +++S++LL +G +L+ +L+ P+ I+
Sbjct: 354 VERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAA 413
Query: 468 TKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNS 527
++ + D R+ NE + + K AWE F + +++ R EL + R Q S
Sbjct: 414 RRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATS 473
Query: 528 FILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVS 587
F+ N+ P L+ V F ++ LLG +LTP F +++L VLR P FM+P + T V+ VS
Sbjct: 474 FVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533
Query: 588 LKRMEEFL 595
+KR+ FL
Sbjct: 534 IKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 6e-41
Identities = 105/418 (25%), Positives = 183/418 (43%), Gaps = 34/418 (8%)
Query: 1028 VAVFVNM-FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDS 1086
VA+ V + ++ L LI + + PL+ + ++ + + RL
Sbjct: 136 VALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLV-----SLRAARAAEQALARL-- 188
Query: 1087 ITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 1146
R + AQ +AL+G + + A + + + + T A A+ +
Sbjct: 189 --RGELAAQLTDALDGAAELVAS---GALPAALAQVEEADRELTRAERRAAAATALGAAL 243
Query: 1147 ---VGGLMIWLTATFAVVQNGSAENQEA---FASTMGLLLSYALNITSLLT-AVLRLASL 1199
GL + A+ + A A + L L+ A + L A +L +
Sbjct: 244 TLLAAGLAVLGALWAGG--PAVADGRLAPVTLAVLVLLPLA-AFEAFAALPAAAQQLTRV 300
Query: 1200 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGL 1259
A ER+ ++ + +++ D+ Y P PPVL G+
Sbjct: 301 RA----AAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGV 354
Query: 1260 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319
S +PP ++V I+G +G+GKS++L TL +++ +G + +DG ++ ++R+ + +
Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVC 414
Query: 1320 PQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376
Q LF TVR NL P + +D +LW ALER L D +R GLD + E G
Sbjct: 415 AQDAHLFDTTVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLDTVLGEGGARL 472
Query: 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1434
S G+RQ L+L+RALL + IL+LDE T +D T + + + T+++I H L
Sbjct: 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 9e-41
Identities = 118/499 (23%), Positives = 214/499 (42%), Gaps = 44/499 (8%)
Query: 370 FRLRSTLVAAVFRK----SLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAP 425
FR+ S L +F K S + R SG + N + D + L + +
Sbjct: 87 FRVLSALRVRLFEKLEPLSPALLLRYR----SGDLLNRLVADVDALDNLYLRVIAPAVVA 142
Query: 426 FRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRM--QKLTKEGLQRTDKRIGLMN 483
+I + + L S+ ALLL + + II + + K G R L +
Sbjct: 143 LVLIAVVTIG---LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRS 199
Query: 484 ---EILAAMDAVKCYAWENSFQSKVQNVRNDELSWF---RKAQFLAACNSFILNSIPVLV 537
+ + + + E++++ + E SW RK + IL I L+
Sbjct: 200 QFTDWVQGQAELLIFGAEDAYR---TALEATEASWLKAQRKQARFTGLSDAILLLIAGLL 256
Query: 538 TVVSFGMFTLL---GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEF 594
+ G P A L +FA L + P + S +R+ +
Sbjct: 257 VIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDI 316
Query: 595 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 654
L + ++ P+ + A+ +RN F++ + + L N NL + G VAI+G +G
Sbjct: 317 LDQKPEVTFPDEQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGS 375
Query: 655 GKTSLISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFG 702
GK++L+ + G P + +R T++ + Q +F+ T+RDN+
Sbjct: 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLA 435
Query: 703 SAFEPARYEKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759
+ A E+ L+ L+ P G T +GE G +SGG+++R+++ARA+ ++
Sbjct: 436 N--PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493
Query: 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 819
+++ D+P LD RQV + GKT ++VT++L L ++DRII++ G + E
Sbjct: 494 PLWLLDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552
Query: 820 EGTFEDLSNNGELFQKLME 838
EGT +L N +++L +
Sbjct: 553 EGTHAELLANNGRYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 159 bits (406), Expect = 9e-41
Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 10/269 (3%)
Query: 1204 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 1263
+ + R+ E E S S+ +V Y + PVL GLS I
Sbjct: 308 IASARRINEITEQKPEVTFPTTSTAAAD----QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 1323
+KV ++GRTG GKS++L L R + ++G IL++G IA + LR+ + ++ Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 1324 VLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380
LFS T+R NL P SD L E L++ L + + + GL+A + E G S G+
Sbjct: 424 HLFSATLRDNLLLAAP--NASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGE 480
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1440
++ L ++RALL + +L+LDE T +D T+ I + + E ++ T+L+I HRL +
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540
Query: 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFS 1469
DRI ++D+G+++E T +ELL+ +G +
Sbjct: 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-40
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ ++ +Y + L G+SF + P + G++G GAGK+++L L +++ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD-------PFSEHSDADLWEALE 1350
+ G+D+ K +R+ +G +PQ P L+ TVR NL+ E ++ + E LE
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
L+D + S G +Q LS++ ALL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANK-----------KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1411 DALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1467
I + +RE K T+L+ H L + CDR+++L+ G+++ TPEEL G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 1468 FSKMVQSTGAANAQYLRSLVLGGEAENK 1495
++ A+ L L L E
Sbjct: 232 GVIELEPERLELAELLEGLKLVKGEEEL 259
|
Length = 293 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 3e-40
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 55/213 (25%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 671
I +N FS+ + +P L +++L I G VAIVG +G GK++L+ +L P S
Sbjct: 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 672 ---------DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 722
+R +AYVPQ ++F+ T+R+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 723 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
SGGQ+QR+++ARA+ + + I D+ SALD + +
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 783 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 815
+R GKT +++ ++L + DRII++ +G
Sbjct: 139 -LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 3e-40
Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
L+FT+P ++ +VG +GAGK+S+LN L + +G + I+G ++ + RK L
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSW 427
Query: 1319 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375
+ Q+P L GT+R N+ +P + SD L +ALE A + + + GLD + +
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1435
SVGQ Q L+L+RALL+ ++L+LDE TA++D ++ L+ + + + T L++ H+L
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 1436 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
+ D+I ++ G++++ E LS G F+ +
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAE-LSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 4e-40
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 26/240 (10%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I N F++D RP L +++ IP G VAIVG +G GK S I +L VS S
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGK-STILRLLFRFYDVSSGS 57
Query: 675 AVI-------------RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYE--KAIDVT 717
+I R + VPQ + +FN T+ NI +G A + E KA +
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQI- 116
Query: 718 SLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
HD + P G T +GERG+ +SGG+KQRV++ARA+ N + + D+ SALD H
Sbjct: 117 ---HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173
Query: 777 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
R++ +R G+T +++ ++L + D+II++ +G + E GT E+L G L+ ++
Sbjct: 174 REIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 4e-39
Identities = 132/544 (24%), Positives = 244/544 (44%), Gaps = 55/544 (10%)
Query: 329 QSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRIT 388
+D + +AF + V +VL + A+++ V +G R+ + + AVF + ++
Sbjct: 47 HGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYL-VTWLGERVVADIRRAVFAHLISLS 105
Query: 389 HEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGAL 448
SG++ + +TTD LQ V + +L S R + + + + S
Sbjct: 106 PSFFDKNRSGEVVSRLTTDTTLLQSVIGS--SL-SMALRNALMCIGGLIMMFITSPKLTS 162
Query: 449 LLVFMFPVQTFIIS----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCY--------- 495
L++ P+ I R++KL++E R E L A+ V+ +
Sbjct: 163 LVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSR 222
Query: 496 ---AWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDL 552
A E ++++ Q +R +A A + +I V V+ G ++ G +
Sbjct: 223 FGGAVEKAYEAARQRIR-------TRALLTAIVIVLVFGAI---VGVLWVGAHDVIAGKM 272
Query: 553 TPAR--AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTS 610
+ F ++ L + ++ A + +R+ E L AE I P P T
Sbjct: 273 SAGTLGQFVFYAVMVAGSIG--TLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL 330
Query: 611 GLPA---ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 667
+P I F++ ++ ++P L +NL + G VA+VG +G GK++L +L
Sbjct: 331 PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390
Query: 668 PPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID 715
P S A +R +A VPQ +F A+V +NI +G A E+
Sbjct: 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEA 448
Query: 716 VTSLQHD---LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
H + LP G T +GERGV +SGGQ+QR+++ARA+ ++ + + D+ SALD
Sbjct: 449 AARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508
Query: 773 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 832
A Q+ + + + G+T +++ ++L + + DRI+++ +G + +GT +L G L
Sbjct: 509 AE-SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567
Query: 833 FQKL 836
+ +L
Sbjct: 568 YARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 1e-38
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
I RN FS+ + E P L N++L I G VAI+G G GK++L+ + G P S
Sbjct: 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 672 ------DAS----AVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQ 720
D A +R + YVPQ +F T+RDNI G+ + R +A ++ +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
++ P G +IGERG +SGGQ+Q V++ARA+ ++ + + D+P SA+D + ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 815
+R +R L KT +++T++ L VDRII++ G
Sbjct: 181 ER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-38
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E+V RY PPVL +SF+I P + + I+G +G+GKS++ + ++ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358
+DG DI+++ +L +G +PQ LFSG++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
S GQRQ L L+RAL +ILVLDE + +DV + + + I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1419 RE-EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1451
+ T ++IAHR T+ DRIL+L+ GRV
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 669
I N FS+D K +P L +IN I G VAIVG TG GKT+LI+ ++ P
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 670 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 722
+ D S +R + V Q +++F+ T+ +NI G A E+ I+
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR--PNATDEEVIEAAKEAGA 118
Query: 723 LDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
D LP G T +GE G N+S G++Q +++ARA+ + + I D+ S +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET-EKL 177
Query: 780 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
+ + G+T +++ ++L + D+I+++ +G + EEGT ++L
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 21/238 (8%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
+ +N F + P L +I+LDIP G VA+VG +G GK++L++ ++ V
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVN-LIPRFYDVDSGR 58
Query: 675 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 721
+I G + V Q ++FN TV +NI +G A E+ + +
Sbjct: 59 ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR--PGATREEVEEAARAAN 116
Query: 722 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
+ LP G T IGERGV +SGGQ+QR+++ARA+ + + I D+ SALD R
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 779 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
V + + +T ++ ++L + DRI+++ +G + E GT E+L G ++ KL
Sbjct: 177 V-QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 5e-36
Identities = 128/519 (24%), Positives = 219/519 (42%), Gaps = 67/519 (12%)
Query: 351 VVLGVLCEAQYF----------QNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKI 400
++L VL Y ++R+G +L L +F S G
Sbjct: 46 LMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS------ATLRRGSG 99
Query: 401 TNLMT-TDAEQLQQ--VCQALHTLWSAPFRIIISLV--LLYNELGVASLLGALLLV---F 452
L D +QL+Q L + AP+ I LV LL+ +G+ +L GA++LV
Sbjct: 100 DGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLVGLAL 159
Query: 453 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 512
+ T +K KE + + + L + L + ++ + + +
Sbjct: 160 LNNRAT------KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKY 213
Query: 513 LSWFRKAQ----FLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLR 568
LS A L+ + + + LV + G + + G++TP L
Sbjct: 214 LSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL--GAYLAIDGEITPGMMIAGSILVGRAL 271
Query: 569 FPLFMLPNMITQVVNANVSLKRMEEFL----LAEEKILLPNPPLTSGLPAISIRNGYFSW 624
P+ Q A + KR+ E L + + LP P + ++I
Sbjct: 272 APIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVP----- 326
Query: 625 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG- 679
++PTL I+ + G +AI+G +G GK++L ++G PP S + A ++
Sbjct: 327 -PGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQW 385
Query: 680 -------TVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQ--HDLDL-LPG 728
+ Y+PQ +F TV +NI FG +P EK I+ L H+L L LP
Sbjct: 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADP---EKIIEAAKLAGVHELILRLPD 442
Query: 729 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGE 787
G T IG G +SGGQ+QR+++ARA+Y + + + D+P S LD G Q I +
Sbjct: 443 GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE-EGEQALANAIKALK 501
Query: 788 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
G T V++T++ L VD+I+++ +G + G +++
Sbjct: 502 ARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 7e-36
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 28/242 (11%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
++ E++ Y P+L LSF+IP + GI+G G+GKS++L L +++ + G +
Sbjct: 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1298 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV-------RF-NLDPFSEHSDADLWEA 1348
L+DG DIA +L K L +PQSP G TV R+ +L F S D
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGENF---SVGQRQLLSLSRALLRRSKILVLDEATAA 1405
E L LGL A S G+RQ + ++RAL + + IL+LDE T+
Sbjct: 120 EEALEL--------LGL---EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 1406 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLS 1462
+D+ + + +R+ K T++++ H LN D ++LL G+++ TPEE+L+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
Query: 1463 NE 1464
E
Sbjct: 229 EE 230
|
Length = 258 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 7e-35
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I +N F + S+ + P L ++L IP G VA+VG +G GK++++S + P S
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 675 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ-- 720
+ +R + V Q +F+ T+ +NI +G A E+ +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKANI 118
Query: 721 HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
HD + LP G T +GERG +SGGQKQR+++ARA+ N + + D+ SALDA + V
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 780 ---FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
DR ++ G+T +++ ++L + D I ++ G V E+GT ++L ++ KL
Sbjct: 179 QEALDRAMK----GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
Query: 837 MENA 840
++
Sbjct: 235 VKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-34
Identities = 128/509 (25%), Positives = 227/509 (44%), Gaps = 56/509 (11%)
Query: 359 AQYFQN--VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ 416
+ + V ++ + +F K L + +G + + +T D+EQ+
Sbjct: 70 CSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAAT 129
Query: 417 ALHTLWSAPFRIIISL--VLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQR 474
+ +I L VLLY + L++V M PV + ++ R+ K + +
Sbjct: 130 DAFIVLVRETLTVIGLFIVLLYYSWQLT-----LIVVVMLPVLSILMRRVSKRLRRISKE 184
Query: 475 TDKRIGLMNEILAAM----DAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFIL 530
+G + + VK + + + V N R A + + S
Sbjct: 185 IQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNR---RLAMKMTSAGSI-- 239
Query: 531 NSIPVLVTVVSFGMFTLLGGDLTPARA-FTSLSLFAVLRFPLFMLPNMITQVVNANVSLK 589
S P+ + S + +L L A+A + F + L + + N N ++
Sbjct: 240 -SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQ 298
Query: 590 RMEEFLLAEEKI--LLPNPP-LTSGLPA-------ISIRNGYFSWDSKAERPTLLNINLD 639
R L A E + LL +PP +G A + RN F + +RP L +I+L
Sbjct: 299 RG---LAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPG-RDRPALDSISLV 354
Query: 640 IPVGSLVAIVGGTGEGKTSLISAM-----------LGELPPVSDAS-AVIRGTVAYVPQV 687
I G VA+VG +G GK++L++ + L + ++D + A +R VA V Q
Sbjct: 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414
Query: 688 SWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745
+FN T+ +NI +G + A E+A+ Q +D LP G T IGE GV +SGGQ
Sbjct: 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474
Query: 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHF 802
+QR+++ARA+ ++ + I D+ SALD R V +R ++ G+T +++ ++L
Sbjct: 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ----GRTTLVIAHRLST 530
Query: 803 LSQVDRIILVHEGMVKEEGTFEDL-SNNG 830
+ + DRI+++ +G + E GT +L + NG
Sbjct: 531 IEKADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 3e-34
Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 37/360 (10%)
Query: 1110 KAYDRMADINGK--SMDKNIRYTL--VNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 1165
A +R +D NG ++ + +R L +G WL I+ EI G+MI
Sbjct: 233 SAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI------------- 279
Query: 1166 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 1225
A + +L AL L A + A S +R+ + A +
Sbjct: 280 -------AGS--ILSGRALAPIDLAIANWKQFVAARQSY---KRLNELLAELPAAAERMP 327
Query: 1226 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 1285
P G++ E + + P+L G+SF + + +GI+G +G+GKS++
Sbjct: 328 LPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARL 381
Query: 1286 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD- 1344
L I G + +DG D+ ++ L + +G +PQ LF GT+ N+ F E +D +
Sbjct: 382 LVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
+ EA A + + I R G D ++ E G S GQRQ ++L+RAL ++VLDE +
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 1405 AVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463
+D + AL + + + T+++IAHR + + D+IL+L GR+ + EE+L+
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-33
Identities = 110/383 (28%), Positives = 180/383 (46%), Gaps = 44/383 (11%)
Query: 1103 LSTIRAYKAY-------DRMADINGKSMDKNIRYTLVN--MGANRWLAIR----LEIVGG 1149
L++IR KA+ A + KN+R ++ ++AI L I GG
Sbjct: 183 LTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242
Query: 1150 LMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVER 1209
W+ V NGS T+G L S+ + + ++ +L LA + N VER
Sbjct: 243 --SWM------VVNGSL--------TLGQLTSFVMYLGLMIWPMLALAWM----FNIVER 282
Query: 1210 ----VGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPP 1265
+ +EAP+V + + P P G + Y P L ++FT+ P
Sbjct: 283 GSAAYSRIRAMLAEAPVVKDGSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKP 340
Query: 1266 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 1325
+GI G TG+GKS++L+ + R ++ G I + K L R L ++ Q+P L
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 1326 FSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382
FS TV N+ P + + ++ A + D I R G D +V E G S GQ+Q
Sbjct: 401 FSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458
Query: 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR 1442
+S++RALL ++IL+LD+A +AVD RT+ I +R+ + T++I AHRL+ + +
Sbjct: 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASE 518
Query: 1443 ILLLDSGRVLEYDTPEELLSNEG 1465
IL++ G + + ++L G
Sbjct: 519 ILVMQHGHIAQRGNHDQLAQQSG 541
|
Length = 569 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-33
Identities = 102/436 (23%), Positives = 192/436 (44%), Gaps = 35/436 (8%)
Query: 428 IIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMN---- 483
+I+ L L+ LL L L+ + PV II ++ + + ++N
Sbjct: 284 VIVGLFLVRQN----MLLFLLSLLSI-PVYAVIIILFKRTFNKLNHDAMQANAVLNSSII 338
Query: 484 EILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL------V 537
E L ++ +K E SK+ + E + F +I + V
Sbjct: 339 EDLNGIETIKSLTSEAERYSKI----DSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNV 394
Query: 538 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLA 597
++ G + ++ G LT + T +L + PL + N+ ++ A V+ R+ E L
Sbjct: 395 VILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454
Query: 598 EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 657
+ + + I S+ L +I+L I + S IVG +G GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 658 SLISAMLGELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGS-- 703
+L ++G S +R + Y+PQ +IF+ ++ +N+L G+
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574
Query: 704 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 763
A ++ ++ D++ +P G TE+ E G +ISGGQKQR+++ARA+ ++S V I
Sbjct: 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634
Query: 764 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 823
D+ S LD +++ + + L KT + V ++L Q D+II++ G + E+G+
Sbjct: 635 LDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692
Query: 824 EDLSNNGELFQKLMEN 839
++L + + L+ N
Sbjct: 693 DELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 5e-33
Identities = 67/217 (30%), Positives = 121/217 (55%), Gaps = 13/217 (5%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS-AVIRGTVAY 683
+N +P G +A+VG +G GKTSL++A+LG LP + + R +++
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 684 VPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742
V Q + + T+RDN+L G + ++A++ + L LLP G T IG++ +S
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 802
GQ QR+++ARA+ + + D+P ++LDAH + V + + +T ++VT+QL
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLED 546
Query: 803 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 839
L+Q D+I ++ +G + ++G + +LS G LF L+ +
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-32
Identities = 93/356 (26%), Positives = 161/356 (45%), Gaps = 35/356 (9%)
Query: 1110 KAYDRMADINGKS-MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 1168
A DR ++ S + + +LV +G +LAI EI G+MI GS
Sbjct: 219 AASDRAGMLSNLSKYFRIVLQSLV-LGLGAYLAIDGEITPGMMI----------AGS--- 264
Query: 1169 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 1228
+L+ AL + S + A +R+ + +
Sbjct: 265 ---------ILVGRALAPIDGAIGGWKQFS---GARQAYKRLNELLANYPSRDPAMPLPE 312
Query: 1229 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 1288
P G + E+V + P L G+SF++ + + I+G +G+GKS++ +
Sbjct: 313 P------EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
Query: 1289 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWE 1347
I G + +DG D+ ++ K +G +PQ LF GTV N+ F E++D + + E
Sbjct: 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIE 426
Query: 1348 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
A + A + + I R G D + G S GQRQ ++L+RAL K++VLDE + +D
Sbjct: 427 AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 1408 VRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462
+ AL + + T+++I HR + + D+IL+L GR+ + +E+L+
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+ +V Y + VL LS + +K+ ++GR+G+GKS++L L ++ ++G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358
+DG ++ L ++ ++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
G FS G+RQ L+L+R LL+ + I++LDE T +D T+ + I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1419 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
E K T++ I H L I D+IL L++G+++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 6e-32
Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299
+ +++ Y P L +S TI + V IVG G+GKS++L L ++ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1300 DGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVR----FNLDPFSEHSDADLWEALERAH 1353
DG D+ K L +LR+ +G++ Q+P F TV F L+ + ++ E +E A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEA- 118
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDA 1412
L+ +GL+ + S GQ+Q ++++ L IL+LDE TA +D
Sbjct: 119 LEL------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1413 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGR 1450
L++ K ++ E K T++I+ H L+ +++ DR+++L+ G+
Sbjct: 173 LLELLKKLKAEGK--TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-31
Identities = 124/522 (23%), Positives = 216/522 (41%), Gaps = 68/522 (13%)
Query: 344 AFSIFVGVVLGVLC--EAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKIT 401
++ + +A + ++R+G RL L VF S R + +
Sbjct: 64 MLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL 123
Query: 402 NLMTTDAEQLQQVCQ-----ALHTLWSAPFRIIISLV--LLYNELGVASLLGALLLVFMF 454
L QV Q L + AP+ + V L + LG+ +L GA++LV +
Sbjct: 124 R-------DLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILV-VL 175
Query: 455 PVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELS 514
+ +R K KE + + + L + L + ++ + + LS
Sbjct: 176 ALLNERATR--KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLS 233
Query: 515 WFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLF 572
+A + ++ + + G+ L G++TP L P+
Sbjct: 234 AQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPID 293
Query: 573 MLPNMITQVVNANVSLKRMEEFL----LAEEKILLPNPP-------LTSGLPAISIRNGY 621
+ Q V A S KR+ E L A E++ LP P LT+ P
Sbjct: 294 LAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG------- 346
Query: 622 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVI 677
++P L I+ + G + I+G +G GK++L ++G PP S + A +
Sbjct: 347 ------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400
Query: 678 RG--------TVAYVPQVSWIFNATVRDNIL-FGSAFEPAR-YE--KAIDVTSLQHDLDL 725
R + Y+PQ +F+ T+ +NI FG +P + E + V H+L L
Sbjct: 401 RQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV----HELIL 456
Query: 726 -LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
LP G T IGE G +SGGQ+QR+++ARA+Y + + + D+P S LD+ G I
Sbjct: 457 RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAI 515
Query: 785 RG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 825
+ G T V++ ++ L+ VD+I+++ +G + G E+
Sbjct: 516 LAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 21/238 (8%)
Query: 615 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD- 672
I+ + F + K + P +L NI+L I G +V IVG +G GK++L + P +
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 673 -----------ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 720
A +R V V Q + +FN ++RDNI A E+ I+ L
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI--ALADPGMSMERVIEAAKLAG 116
Query: 721 -HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
HD LP G T +GE+G +SGGQ+QR+++ARA+ N + IFD+ SALD
Sbjct: 117 AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 779 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
+ R + +G+T +++ ++L + DRII++ +G + E+G+ ++L L+ L
Sbjct: 177 IM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-31
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 46/216 (21%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ ++ RY L +S T+ + G++G GAGK++++ + +++ + G I
Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1357
+ G DI K ++++ +G +P+ P L+ TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
S G +Q L+L++ALL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1418 IREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1451
+RE K T+L+ +H L CDR+ +L++GR+
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-31
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
++ +++ + + L +SF+I + +G+VG +G+GKS++ + +++ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1297 ILIDGFDIAKFG---LMDLRKILGIIPQ------SPVLFSGTVRFNL-DPFSEHSDADLW 1346
I+ DG D+ K RK + ++ Q +P + T+ + +P H
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 1347 EALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
EA + A L + +GL +V E S GQRQ ++++RAL K+L+ DE T+
Sbjct: 119 EARKEAVLLLLVG---VGLPEEVLNRYPHE-LSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 1405 AVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEY 1454
A+DV A I K ++EE T+L I H L + DR+ ++ +G+++E
Sbjct: 175 ALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 6e-31
Identities = 100/467 (21%), Positives = 184/467 (39%), Gaps = 50/467 (10%)
Query: 368 VGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQV-CQALHTLWSAPF 426
R L V+ + R R+ G + + D + LQ + + + A
Sbjct: 80 AALRSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALV 139
Query: 427 RIIISLVL---LYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMN 483
++ L + G LL F+ P+ + +R R L
Sbjct: 140 VGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAA-----EQALARLRGELAA 194
Query: 484 EILAAMDAV---KCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV--- 537
++ A+D + ++V+ + R + AA + + ++ +L
Sbjct: 195 QLTDALDGAAELVASGALPAALAQVEEA---DRELTRAERRAAAATA-LGAALTLLAAGL 250
Query: 538 TVVS---FGMFTLLGGDLTPAR----AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 590
V+ G + G L P L+ F LP Q+ + +R
Sbjct: 251 AVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAER 306
Query: 591 MEEFLLAEEKILLPNPP----LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLV 646
+ E L A + + P + G P + +R+ + P L ++LD+P G V
Sbjct: 307 IVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERV 364
Query: 647 AIVGGTGEGKTSLISAMLGELPP------VSDASA------VIRGTVAYVPQVSWIFNAT 694
AI+G +G GK++L++ + G L P + +R V+ Q + +F+ T
Sbjct: 365 AILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTT 424
Query: 695 VRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753
VR+N+ A++ L L LP G T +GE G +SGG++QR+++AR
Sbjct: 425 VRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALAR 484
Query: 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 800
A+ +++ + + D+P LDA ++ + LSG+T VL+T+ L
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELL-EDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 38/247 (15%)
Query: 1239 IKFEDVVLRY---RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER 1294
I+ E+V + L +S IP + GI+G +GAGKS TL R++ LER
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKS----TLLRLINLLER 57
Query: 1295 ---GRILIDGFDIA---KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWE 1347
G + +DG D+ + L LR+ +G+I Q L S TV N+ F
Sbjct: 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENV-AF---------- 106
Query: 1348 ALERAHL-KDAI--RRNSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400
LE A + K I R L GL + S GQ+Q ++++RAL KIL+ D
Sbjct: 107 PLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCD 166
Query: 1401 EATAAVDVR-TDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456
EAT+A+D T ++++ K I E T+++I H + + CDR+ +LD GR++E T
Sbjct: 167 EATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
Query: 1457 PEELLSN 1463
E+ +N
Sbjct: 226 VSEVFAN 232
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-30
Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 27/269 (10%)
Query: 1216 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPS 1266
+P I + + ++ RY + +SF +
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 1267 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKFGLMDLRKILGIIPQSPV 1324
+ +G+VG +G+GKS++ L ++ G I+ DG D+ L LR+ + ++ Q P
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377
Query: 1325 LF---SGTVRFNL-DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDAQVSEAGENFSVG 1379
TV L +P H E R A L + + LD E S G
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE----LSGG 433
Query: 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEFKSCTMLIIAHRLN 1435
QRQ ++++RAL K+L+LDE +A+DV A L++ ++EE T L I+H L
Sbjct: 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELG-LTYLFISHDLA 491
Query: 1436 TIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+ DR+ ++ GR++E E++ N
Sbjct: 492 VVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-30
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 33/242 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ E++ + Y PVL +S ++ + ++G GAGKS++L + +++ G I
Sbjct: 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDAD 1344
I G + K R +G +PQ + F TV+ ++
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
+ EALER ++D D Q+ E S GQ+Q + L+RAL + +L+LDE
Sbjct: 120 VDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 1405 AVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
VDV I ++E + T+L++ H L ++ DR++ L+ ++ PEE+L+
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227
Query: 1463 NE 1464
E
Sbjct: 228 EE 229
|
Length = 254 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-30
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 58/213 (27%)
Query: 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299
+ E++ RY L +S T+ + V +VG G+GKS++L + +++ G ILI
Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1300 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 1359
DG DIAK L
Sbjct: 59 DGKDIAK-----------------------------------------------LPLEEL 71
Query: 1360 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419
R +G Q S GQRQ ++L+RALL +L+LDE T+ +D + + + +R
Sbjct: 72 RRRIGYVPQ-------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1420 EEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR 1450
E + T++I+ H DR+++L G+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-30
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 1301
E++ + Y VL LS +I + VGI+G GAGKS++L TL +++ G IL+DG
Sbjct: 3 ENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 1302 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER---AHLKDAI 1358
D+A +L + + +PQ ALE AHL D
Sbjct: 61 KDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLAD-- 92
Query: 1359 RR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
R N L S G+RQ + L+RAL + IL+LDE T+ +D+ + +
Sbjct: 93 RPFNEL-------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 1418 IREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVL 1452
+R + ++ H LN DR++LL GR++
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-30
Identities = 111/452 (24%), Positives = 206/452 (45%), Gaps = 49/452 (10%)
Query: 416 QALHTLWSAPFRII-ISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQR 474
AL + F ++ ++++ Y+ ++G+L+ + V F+ ++K ++ +R
Sbjct: 255 SALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSV--FVGPILRKRVEDKFER 312
Query: 475 TDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP 534
+ + E + ++ +K A E FQ++ ++ + L + I
Sbjct: 313 SAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQ 372
Query: 535 VLVTVVS--FGMFTLLGGDLTPAR--AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 590
L + FG ++GG L+P + AF L+ P+ L + ++L+R
Sbjct: 373 KLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQ--PVLRLAQLWQDFQQTGIALER 430
Query: 591 MEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS-----KAERPTLL-NINLDIPVGS 644
+ + L + P P ++GL A+ G ++++ + P +L N+NLDI G
Sbjct: 431 LGDILNS------PTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGE 484
Query: 645 LVAIVGGTGEGKTSLISAM-----------------LGELPPVSDASAVIRGTVAYVPQV 687
+ IVG +G GK++L + L P +R + V Q
Sbjct: 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW-----LRRQMGVVLQE 539
Query: 688 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNISGG 744
+ +F+ ++RDNI + P +E I L D LP G TE+GE+G N+SGG
Sbjct: 540 NVLFSRSIRDNIALCNPGAP--FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597
Query: 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 804
Q+QR+++ARA+ N + IFD+ SALD + R +R G+T +++ ++L +
Sbjct: 598 QRQRIAIARALVGNPRILIFDEATSALDYE-SEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 805 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
DRII++ +G + E G E+L L+ +L
Sbjct: 657 ACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 7e-30
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 27/238 (11%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 1294
I+ D+ + Y + L +S IP + ++G +G GKS++L L R+ +L
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1295 -GRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDA 1343
G +L+DG DI +++LR+ +G++ Q P F G++ N+ E D
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1344 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
+ EAL +A L D ++ L S GQ+Q L L+RAL ++L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1404 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 1460
+A+D + A I++ I E K T++I+ H + DR L +GR++E+ E++
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 9e-30
Identities = 52/259 (20%), Positives = 97/259 (37%), Gaps = 5/259 (1%)
Query: 318 FVGPLLLNQLLQSMQ-QDGPAWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRST 375
V PLLL + L S+ +G A + VL L F R+G R+R
Sbjct: 16 LVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKR 75
Query: 376 LVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLL 435
L A+ R+ L + + G++T+ +T D +++ L+ ++ ++
Sbjct: 76 LFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIV 135
Query: 436 YNELGVASLLGALLLVF-MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKC 494
G L L ++ + + + +++KL ++ + K + E L+ + VK
Sbjct: 136 MFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKA 195
Query: 495 YAWENSFQSKVQNVRND-ELSWFRKAQFLAACNSFILNSIP-VLVTVVSFGMFTLLGGDL 552
+ E + D E + +KA + FG + ++ G L
Sbjct: 196 FGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGL 255
Query: 553 TPARAFTSLSLFAVLRFPL 571
+ F LSL L PL
Sbjct: 256 SVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ E++ RY L +S I ++V ++G G+GKS++L L +++ G +L
Sbjct: 4 IEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1299 IDGFDI-AKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD------PFSEHS-DADLWEA 1348
+DG D ++ L++LR+ +G++ Q+P LF TV + + + EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
LE L++ + R L S GQ+Q ++++ L +IL+LDE TA +D
Sbjct: 123 LELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 1409 RTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ + + +++ E T++I+ H L +++ DR+++LD G++L P E+ ++
Sbjct: 172 KGRRELLELLKKLKEEGGK-TIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 9e-29
Identities = 113/440 (25%), Positives = 192/440 (43%), Gaps = 49/440 (11%)
Query: 432 LVLLYNEL--GVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAM 489
L+LLY+ + + A+ ++ + V + ++L ++ + T I + I
Sbjct: 287 LMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSI---- 342
Query: 490 DAVKCYAWENSFQSKVQ----NVRNDELSWFRKAQFLAACNSFI--LNSIPVLVTVVSFG 543
+ +K E+ F S+ + N + Q L + + LNS +LV G
Sbjct: 343 ETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILV----VG 398
Query: 544 MFTLLGGDLTPAR--AFTSLSLFAVLRF--PLFMLPNMITQVVNANVSLKRMEEFLLAEE 599
++ G LT AF SL + F P+ L + L R+++ L
Sbjct: 399 GLRVMEGQLTIGMLVAFQSL----MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454
Query: 600 KILLPNPPLTSGLPA--------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGG 651
LL + + +RN F + S E P + N +L + G VA+VGG
Sbjct: 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGG 513
Query: 652 TGEGKTS---LISAML----GEL-----PPVSDASAVIRGTVAYVPQVSWIFNATVRDNI 699
+G GK++ L++ + GE+ P V+ +VA V Q ++F TVRDN+
Sbjct: 514 SGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL 573
Query: 700 -LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 758
L+ A +A ++ + PGG E+ E G N+SGGQ+QR+ +ARA+ N
Sbjct: 574 TLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633
Query: 759 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 818
+ I D+ SALD + + D R G T ++V ++L + D II++ G V
Sbjct: 634 PSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690
Query: 819 EEGTFEDLSNNGELFQKLME 838
+ GT E+L G + +L+
Sbjct: 691 QRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 1239 IKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295
I ED + E L ++ +P + V IVG G+GKSS+L+ L + ELE+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEK- 57
Query: 1296 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1355
G + + + + Q P + +GT+R N+ + + ++ L+
Sbjct: 58 ----------LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 1414
+ G ++ E G N S GQ+Q +SL+RA+ + I +LD+ +AVD +
Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 1415 QKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 1450
+ I + T +++ H+L + D+I++LD+GR
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299
+ ED+ + Y PVL +SF + P + + IVG GAGKS++L + +++ G I +
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1300 DGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDADL 1345
G + K RK +G +PQ + F +VR S+ A +
Sbjct: 59 FGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 1346 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
EALER L + R Q+ E S GQ+Q + L+RAL++ +L+LDE A
Sbjct: 114 DEALERVGLSELADR-------QIGEL----SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 1406 VDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLD 1447
VD +T I + +RE + T+L++ H L +++ DR+LLL+
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 39/247 (15%)
Query: 1239 IKFEDV--VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 1294
I+ ++V V L +S ++P + GI+GR+GAGKS TL R + LER
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS----TLIRCINGLERP 57
Query: 1295 --GRILIDGFDIAKFGLMDLRKI---LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE-A 1348
G +L+DG D+ +LRK +G+I Q FNL S + +
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQ---------HFNL--LSSRTVFENVALP 106
Query: 1349 LERAHLKDAIRR-------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
LE A + A +GL+ + S GQ+Q + ++RAL K+L+ DE
Sbjct: 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE 166
Query: 1402 ATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456
AT+A+D T AL++ I E T+++I H + + CDR+ +++ G V+E T
Sbjct: 167 ATSALDPETTQSILALLRD-INRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
Query: 1457 PEELLSN 1463
EE+ +N
Sbjct: 225 VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 1e-27
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ + + VL G+ + + + I+G +G+GKS++L + ++ + G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1299 IDGFDIAKFG---LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 1353
IDG DI+ L LR+ +G++ QS LF TV N+ P EH+ E E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDA 1412
K ++GL S G ++ ++L+RAL ++L+ DE TA +D + +
Sbjct: 119 EK----LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 1413 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
+ +++++E T +++ H L+T DRI +L G+++ TPEEL
Sbjct: 175 IDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-27
Identities = 123/536 (22%), Positives = 235/536 (43%), Gaps = 58/536 (10%)
Query: 336 PAWIGYIYAFSIF-VGVVLGVLCEAQYFQNVM-RVGFRLRSTLVAAVFRKSLRITHEARK 393
PA I+ + + + F M R+ R+R L ++ R+ L E +
Sbjct: 198 PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENK- 256
Query: 394 NFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 453
+G++T+ +++D Q + ++L + R ++ L+ L + S ++ +
Sbjct: 257 ---TGELTSRLSSDT---QTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310
Query: 454 FPVQTFIIS-----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNV 508
P+ F+ R Q L++E + K + E L+ M V+ +A E S+ +
Sbjct: 311 LPL-VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEA 369
Query: 509 RNDELSWFRKAQFLAACNSFI--LNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAV 566
+ L ++ A + + + + V V+ GG L +S +L +
Sbjct: 370 LEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY------YGGQLVLTGKVSSGNLVS- 422
Query: 567 LRFPLFMLPNM-ITQVVNANVSL-KRMEEFLLAEEKIL-----LPNPPLTSGLPA----- 614
F+L + + V + M + + A EK+ PN PLT L
Sbjct: 423 -----FLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEG 477
Query: 615 -ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GE 666
I ++ FS+ ++ + P L + + G +VA+VG +G GK+++ + + G+
Sbjct: 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 667 L----PPVSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 721
+ P+ + VA V Q +F+ +VR+NI +G P A + H
Sbjct: 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH 597
Query: 722 D-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
D + P G TE+GE+G +SGGQKQR+++ARA+ V I D+ SALDA + +
Sbjct: 598 DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ 657
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
+ + +T +L+ ++L + + D+I+++ +G V E GT + L + ++ L
Sbjct: 658 E---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-26
Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 1239 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----L 1292
++ E++ + + P + +SF + P + +GIVG +G+GKS++ L ++ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1293 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPV-LFSG--TVRFNLD-PFSEHSDAD 1344
G +++DG D+ ++RK+ G +I Q P+ + T+ + H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
EA +RA + + + L + S G RQ + ++ AL + K+L+ DE T
Sbjct: 126 RAEARKRA--VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 1405 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461
A+DV T A I +++ +L I H L + + DR++++ G ++E EE+L
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 1462 SNEGSSFSKM 1471
SN +++
Sbjct: 244 SNPQHPYTRG 253
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 42/239 (17%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 671
I +R S+ R L ++LD+ G ++AI+G +G GK++L+ ++G L P S
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 672 -----DASAV-------IRGTVAYVPQVSWIFNA-TVRDNILFG----SAFEPARYEK-- 712
D S + +R + + Q +F++ TV +N+ F + +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 713 --AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
++ L+ DL P +SGG K+RV++ARA+ + ++ ++D+P +
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 771 LDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 826
LD + V D IR + G T ++VT+ L + DRI ++++G + EGT E+L
Sbjct: 167 LDP-IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 1239 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
I + + R+R V + G+SFT+ P + G++G GAGK++ L L ++E + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1355
+DGFD+ K R++ G + S L+ T R NL+ F A L+ L+ L
Sbjct: 62 ATVDGFDVVKEPAEARRRL-GFVSDSTGLYDRLTARENLEYF-----AGLY-GLKGDELT 114
Query: 1356 DAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
+ + LG++ + FS G RQ ++++RAL+ +L+LDE T +DV
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 1414 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL 1452
+++ IR+ +L H + + CDR+++L GRV+
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 3e-26
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 38/224 (16%)
Query: 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---- 671
++N FS+ RP L +I+L I G V IVG G GK++L+ + G L P S
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 672 --------DASAVIRGTVAYVPQ--VSWIFNATVRDNILFG------SAFE-PARYEKAI 714
+ +R V V Q F TV + + FG E R E+A+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
++ L+ D P +SGGQKQRV++A + + D+ + D+P + LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 775 VGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEG 815
R++ + ++ +L GKT ++VT+ L L ++ DR+I++ +G
Sbjct: 169 GRRELLEL-LK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 37/248 (14%)
Query: 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 671
L I N F + + L +++L+I G V ++G G GK++L+ + G L P S
Sbjct: 1 LRMIEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 672 -------------DASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEP-------AR 709
+ +R V V Q +F TV D + FG R
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 710 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 769
+A+++ L+ LD P N+SGGQKQRV++A + ++ + D+P +
Sbjct: 119 VAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 770 ALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 827
LD R++ + + E GKT ++VT+ L + + DR++++ +G + +G ++
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 828 NNGELFQK 835
N+ EL
Sbjct: 228 NDAELLLA 235
|
Length = 235 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 14/222 (6%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 671
I +N + P L NI+ I G V IVG TG GK+SL+ A+ + S
Sbjct: 1 GDIEFKNVSLRY-RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 672 -------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
D S + +R ++ +PQ +F+ T+R N+ + +A++ L+
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLK 119
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
++ LPGG T + E G N+S GQ+Q + +ARA+ S + + D+ +++D +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822
+ IR T + + ++L + DRI+++ +G V E +
Sbjct: 180 -KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 5e-26
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 43/248 (17%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 671
P I + N S+ + RP L +I+L + G + A++G G GK++L+ A+LG L P S
Sbjct: 3 PMIEVENLTVSYGN---RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 672 --------DASAVIRGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPAR 709
R + YVPQ V F TV+D +L G + + +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 710 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 769
++A++ ++ D +IGE +SGGQKQRV +ARA+ N D+ + D+P +
Sbjct: 120 VDEALERVGMEDLRD-------RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 770 ALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826
+D G++ ++ EL GKT ++VT+ L + DR+I ++ ++ G E++
Sbjct: 169 GVDVA-GQKEIYDLLK-ELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEV 225
Query: 827 SNNGELFQ 834
L +
Sbjct: 226 LTEENLEK 233
|
Length = 254 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 5e-26
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 31/230 (13%)
Query: 1250 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 1309
P L+GLS I D V ++G GAGKS++LN + ++ G+ILIDG D+ K +
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 1310 MDLRKILGIIPQSPVLFSG---TVRFNLDPFSEHSDADLWE-------------ALERAH 1353
+L + Q P+ + T+ NL L E R+
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENL---------ALAESRGKKRGLSSALNERRRSS 126
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DA 1412
++ + R LGL+ ++S+ S GQRQ LSL A L KIL+LDE TAA+D +T +
Sbjct: 127 FRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 1413 LIQKT--IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGR-VLEYDTPE 1458
+++ T I EE K T L++ H + +D +R+++L SG+ VL+ E
Sbjct: 187 VMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+L G+S T+P + V ++GR GAGK+++L T+ ++ G I DG DI +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG---LPPH 70
Query: 1314 KI--LGI--IPQSPVLFSG-TVRFNLD-----PFSEHSDADLWEALER-AHLKDAIRRNS 1362
+ GI +P+ +F TV NL A L E LK+ RR
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE--RRKQ 128
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA-----VDVRTDALIQKT 1417
L S G++Q+L+++RAL+ R K+L+LDE + V+ +A+ +
Sbjct: 129 L---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI--RE 177
Query: 1418 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+R+E T+L++ ++ DR +L+ GRV+ T ELL++
Sbjct: 178 LRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-25
Identities = 128/521 (24%), Positives = 224/521 (42%), Gaps = 84/521 (16%)
Query: 365 VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDA-EQLQQVCQA--LHTL 421
V+R+ R+ ++L AAV+ + LR+ + +++G + Q++++ L TL
Sbjct: 200 VLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDL--ASRAMGISQIRRILSGSTLTTL 257
Query: 422 WSAPFRIIISLVLL--YN-ELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKR 478
S F ++ +L L+ Y+ +L + ++ AL+ + + V + R ++ L +
Sbjct: 258 LSGIFALL-NLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERR----LLELSGK 312
Query: 479 I-GLMNEIL--------AAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFI 529
I GL +++ A + W F + + AQ + +
Sbjct: 313 ISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRK--------LELSAQRIENLLTVF 364
Query: 530 LNSIPVLVTVVSFG--MFTLLGGDLTPAR------AFTSLSLFAVLRFPLFMLPNMITQV 581
+PVL + F + L G L+ AF S S AV + L N + +
Sbjct: 365 NAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSG-AVTQ-----LSNTLISI 418
Query: 582 VNANVSLKRMEEFLLAEEKILL--PNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 639
+ +R + L A ++ +P SG AI + F + L +++L
Sbjct: 419 LAVIPLWERAKPILEALPEVDEAKTDPGKLSG--AIEVDRVTFRYRPDG-PLILDDVSLQ 475
Query: 640 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIR--GTVAYV 684
I G VAIVG +G GK++L+ +LG P S D AV R G V
Sbjct: 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL-- 533
Query: 685 PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744
Q + + ++ +NI G+ +A + L D+ +P G T I E G +SGG
Sbjct: 534 -QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592
Query: 745 QKQRVSMARAVYSNSDVFIFDDPLSALD----AHVGRQVFDRCIRGELSGKTRVLVTNQL 800
Q+QR+ +ARA+ + +FD+ SALD A V + +R L TR+++
Sbjct: 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS-ESLER-----LKV-TRIVIA--- 642
Query: 801 HFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKLME 838
H LS + DRI ++ G V ++GT+++L LF +L
Sbjct: 643 HRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 56/216 (25%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 671
+ + N F + AE P L N++ I G +AI+G +G GK++L +LG L P S
Sbjct: 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 672 --DASAV-------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 722
D + + + V Y+PQ +F+ ++ +NIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 723 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
SGGQ+QR+ +ARA+Y N + + D+P S LD G + ++
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQ 137
Query: 783 CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 817
I + +G TR+++ ++ L+ DRI+++ +G V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-25
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 607 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-- 664
P G ++IR F++ + + P L N+N + G ++ I G TG GK++L+S +
Sbjct: 308 PEGRGELDVNIRQ--FTY-PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
Query: 665 -----GELP----PVSDASA-VIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKA 713
G++ P++ R +A V Q ++F+ TV +NI G E
Sbjct: 365 FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHV 424
Query: 714 IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
+ S+ D+ LP G TE+GERGV +SGGQKQR+S+ARA+ N+++ I DD LSA+D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484
Query: 774 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 828
Q+ +R G+T ++ ++L L++ I+++ G + + G + L+
Sbjct: 485 RTEHQIL-HNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 97/380 (25%), Positives = 176/380 (46%), Gaps = 41/380 (10%)
Query: 483 NEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSF 542
N I A A+K F + + + + L W+ A L S I ++ ++
Sbjct: 212 NRIEAETSALK------QFTNNLLSAQYPVLDWWALASGLNRMASTI-----SMMCILVI 260
Query: 543 GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 602
G ++ G+L+ + +L L + ITQ+ A L E+F E+ +
Sbjct: 261 GTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKL---EDFFDLEDSVF 317
Query: 603 LPNPPLTSG-LP----AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 657
P + LP A+ R+ F + + ++ + +++ + G VAIVG TG GKT
Sbjct: 318 QREEPADAPELPNVKGAVEFRHITFEFANSSQ--GVFDVSFEAKAGQTVAIVGPTGAGKT 375
Query: 658 SLISAMLGELPPVS--------DASAV----IRGTVAYVPQVSWIFNATVRDNILFG--S 703
+LI+ + P D + V +R ++A V Q + +FN ++R+NI G
Sbjct: 376 TLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435
Query: 704 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 763
A + YE A + L G D T +GERG +SGG++QR+++ARA+ N+ + +
Sbjct: 436 ATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNRLSGGERQRLAIARAILKNAPILV 494
Query: 764 FDDPLSALDAHVGRQVFDR--CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821
D+ SALD +V + +R +T ++ ++L + D ++ + +G + E+G
Sbjct: 495 LDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551
Query: 822 TFEDLSNNGELFQKLMENAG 841
+F++L F KL+ +G
Sbjct: 552 SFQELIQKDGRFYKLLRRSG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-25
Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 31/311 (9%)
Query: 550 GDLTPARAFTSLSLFAVL-RFPLFMLP-----NMITQVVNANVSLKRMEEFLLAEEKILL 603
G A +L +FA L F M P + QV+ S +R+ E + ++
Sbjct: 271 GGNAQPGALIALFVFAALAAFEALM-PVAGAFQHLGQVIA---SARRINEITEQKPEVTF 326
Query: 604 P-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS- 661
P + ++++ N F++ +P L ++L I G VA++G TG GK++L+
Sbjct: 327 PTTSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385
Query: 662 ------AMLGEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 710
GE+ P++D S A +R ++ V Q +F+AT+RDN+L A A
Sbjct: 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL--AAPNASD 443
Query: 711 EKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 767
E I+V L+ L+ G + +GE G +SGG+++R+ +ARA+ ++ + + D+P
Sbjct: 444 EALIEVLQQVGLEKLLEDDKGLN-AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP 502
Query: 768 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 827
LDA RQ+ + KT +++T++L L Q DRI ++ G + E+GT ++L
Sbjct: 503 TEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
Query: 828 NNGELFQKLME 838
+ +L +
Sbjct: 562 AQQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 22/239 (9%)
Query: 1238 SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295
+ ++ + Y L+ +S I + +GIVG +G+GKS++ L + + G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1296 RILIDGFDIA-KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 1354
IL+DG +A K + + ++ Q P +L+P L E L L
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYS-------SLNPRRTVGRI-LSEPLRPHGL 114
Query: 1355 KDAIRR-----NSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
+ +R + +GL + + S GQRQ ++++RAL+ K+L+LDE T+A+DV
Sbjct: 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 1409 RTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
A I +++E T L I+H L + CDRI ++D+G+++E EELLS+
Sbjct: 175 SVQAQILNLLLELKKERG-LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-25
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 46/218 (21%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ ++V RY + VL+ +S I + V ++G +G+GKS++L + + E + G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1299 IDGFDIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1355
IDG D+ L LR+ +G++ Q LF TV N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------- 97
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
+LGL S GQ+Q ++L+RAL +L+LDE T+A+D T ++
Sbjct: 98 ------ALGL-----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1416 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGR 1450
++ T++++ H L+ DR+++L G+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 8e-25
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLR 1313
++ +S + P + VG++G GAGK+++ N + + G ++ G DI GL
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHRI 76
Query: 1314 KILGIIP--QSPVLFSG-TVRFNL---DPFSEHSDADLWEALERAHLKDAIRR-----NS 1362
LGI Q LF G TV N+ L R ++A R
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTIR 1419
+GL N S GQ++ L ++RAL + K+L+LDE A ++ T+ L + + +R
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 1420 EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ T+L+I H + ++ DRI++L+ G V+ TPEE+ +N
Sbjct: 197 DRGGV-TILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 42/240 (17%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
+ + N F + +P L +++ IP G + I+G G GK++L+ + G L P S
Sbjct: 1 MMLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 673 ------------ASAVIRGTVAYVPQVSWI-FNATVRDNILFG--------SAFEPARYE 711
+ + +AYVPQ F TV + +L G E
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 712 KAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
+ L+LL + + +R V+ +SGG++QRV +ARA+ + + + D+P S
Sbjct: 118 IVEEA------LELL---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 771 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 825
LD +V + G T V+V LH L+ D +IL+ +G + +GT E+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMV---LHDLNLAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
L +SF++ P + G++G GAGK+++ N + + G +L DG DI
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIA 73
Query: 1315 ILGIIP--QSPVLFSG-TVRFNL----------DPFSEHSDADLWEALERAHLKDAIRRN 1361
LGI Q P LF TV N+ + + EA ERA + + R
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAE--ELLER- 130
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 1418
+GL S GQ++ L ++RAL K+L+LDE A ++ T+ L + + +
Sbjct: 131 -VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 1419 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
RE + T+L++ H ++ ++ DR+ +LD GRV+ TP+E+ +N
Sbjct: 190 RE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-24
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 41/255 (16%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DASAVIRGTVAY 683
++ ++ G + ++G G GKT+L+ + G L P S A +R + Y
Sbjct: 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82
Query: 684 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
VPQ ++ TVR+N+ F R E+ +++ L+ +
Sbjct: 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT------ 136
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTR 793
+SGG KQR+S+A A+ + ++ I D+P S LD R+ +R EL+ G
Sbjct: 137 -----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLR-ELAKEGGVT 189
Query: 794 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 849
+L++ H L + DR+I++++G + EGT E+L + ++E E
Sbjct: 190 ILLST--HILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLEL-AEL 246
Query: 850 KEDGETVDNKTSKPA 864
E + V +
Sbjct: 247 LEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 6/249 (2%)
Query: 918 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSF-GQVLVTLA 973
+LI +L L + L + D L I + Q L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 974 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 1033
+ Y KRL A+L IL PM FF TN +G + +R D+ I + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 1034 MFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 1093
+F ++ ++ F+++ ++ +L L R++ R + +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 1094 AQFGEALNGLSTIRAYKAYDRMAD-INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 1152
+ E+L+G+ T++A+ + + + D +++ L
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKK-AITAGLSFGITQLISYLSY 239
Query: 1153 WLTATFAVV 1161
L F
Sbjct: 240 ALALWFGAY 248
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
++ ++V + VL ++ I + V ++G +G GKS++L + + E G I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1298 LIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNL--------DPFSEHSDADLWEA 1348
LIDG D+ R I ++ Q+ L+ TV N+ P +E D + E
Sbjct: 61 LIDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI-DKRVKEV 117
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
+ L+ + R L L S GQRQ ++L+RAL+R+ K+ +LDE + +D
Sbjct: 118 AKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1409 RTDALIQKTIREEFK------SCTMLIIAHRL--NTIIDCDRILLLDSGRVLEYDTPEEL 1460
+ ++ +R E K T + + H + DRI++++ GR+ + TP EL
Sbjct: 167 K----LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGTPLEL 221
Query: 1461 LSNEGSSF 1468
+ F
Sbjct: 222 YERPANLF 229
|
Length = 338 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 34/244 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E++ Y P L ++ I P + V I+G +GAGKS++L + R+VE G IL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 1299 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 1339
++G DI K LRK+ +I + VL + T R L FSE
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 1340 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1399
ALER +GL + + + S GQ+Q ++++RAL ++ +++
Sbjct: 121 EDKERALSALER-----------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 1400 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456
DE A++D +T + ++ + T++I H+++ DRI+ L +G ++
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
Query: 1457 PEEL 1460
P EL
Sbjct: 230 PSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-24
Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 21/238 (8%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ V + +L G+ +P + + I+G +G+GKS++L + ++ ++G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 1299 IDGFDIAKF---GLMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 1353
IDG DI + L ++RK +G++ Q LFS TV N+ P EH+ E
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 1354 LKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1409
+K +GL A + + S G R+ ++L+RA+ ++L LDE T+ +D
Sbjct: 127 MK----LELVGLRG---AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1410 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ +I + IRE + T++++ H L++++ DR+ +L G+V+ TPEELL+++
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD 237
|
Length = 263 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 618 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 677
+N F++ ++ + L +++ + G + A+VG +G GK++++ A+L ++
Sbjct: 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLL 73
Query: 678 RG-------------TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD-L 723
G V+ V Q +F +++DNI +G K + H +
Sbjct: 74 DGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI 133
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
L G TE+GE+G +SGGQKQRV++ARA+ N V I D+ SALDA Q +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQA 192
Query: 784 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 817
+ +T +++ ++L + + D+I+++ G +
Sbjct: 193 LYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-24
Identities = 66/237 (27%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
IK E+V Y L +SF I + V I+G G+GKS++ L +++ + G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALE-----R 1351
IDG I+K L ++RK +GII Q+P F G TV + D+ LE
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATV-----------EDDIAFGLENKKVPP 116
Query: 1352 AHLKDAIRRNS--LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1409
+KD I + +G++ + + +N S GQ+Q ++++ L +I++ DE+T+ +D +
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 1410 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
I+K + + + + T++ I H ++ I D++++ G+++ P+E+L+N+
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 1312
L G+S + + V ++GR GAGK+++L T+ +V GRI+ DG DI +
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 1313 RKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLWEALER-AHLKDAIRRNSLG 1364
R + +P+ +F TV NL E + DL E E LK+ RRN
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE--RRNQR- 133
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTDALIQKTIREEF 1422
AG S G++Q+L+++RAL+ R K+L+LDE + A + + I + I+E
Sbjct: 134 -------AG-TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE--IFEAIKELR 183
Query: 1423 KSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
K M L++ ++ DR +L++GR++ T ELL++
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ E++ Y P L +S +I P + V ++G +GAGKS++L L +VE G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1299 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 1339
IDG DI K LR++ +I + VL T R F +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 1340 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1399
ALER +GL + + + S GQ+Q ++++RAL+++ K+++
Sbjct: 120 EEKQRALAALER-----------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILA 168
Query: 1400 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456
DE A++D + + ++ + T+++ H+++ + DRI+ L GR++
Sbjct: 169 DEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
Query: 1457 PEEL 1460
P EL
Sbjct: 229 PAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-23
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I RN F++ K E P L NIN IP G VA+VG +G GK S I+ +L + +
Sbjct: 342 IEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGK-STIANLLTRFYDIDEGE 399
Query: 675 -------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 721
A +R VA V Q +FN T+ +NI + + +R + + + +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ-IEEAARMAY 458
Query: 722 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
+D + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES--- 515
Query: 779 VFDRCIRGELS----GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
+R I+ L +T +++ ++L + + D I++V +G + E GT +L
Sbjct: 516 --ERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 1239 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
I+ +++ Y L G+S +I + V IVG +G+GKS++LN L + G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1297 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD-------PFSEHSDAD 1344
+ +DG DI+K +L +G + QS L T N++ +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
E LER L D + SE S GQ+Q ++++RAL KI++ DE T
Sbjct: 121 AEELLERVGLGDRLNHY-------PSE----LSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 1405 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1451
+D T + + +RE + T++++ H DRI+ L G++
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
V++ +S + + VG++G GAGK++ + +V + G+IL+D DI K M R
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-MHKR 76
Query: 1314 KILGI--IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1370
LGI +PQ +F TV N+ E + DL +A + L + +
Sbjct: 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRD 134
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM--L 1428
+ S G+R+ + ++RAL K ++LDE A VD IQ+ I+ K + L
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK-HLKDRGIGVL 193
Query: 1429 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE-------GSSFS 1469
I H + +D CDR ++ G+VL +PEE+++NE G +F
Sbjct: 194 ITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYLGENFK 242
|
Length = 243 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 4e-23
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 21/231 (9%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ ++ Y+ P + LS + + G++G GAGK++ L L + G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKD 1356
I+G+ I R+ LG PQ LF TVR EH L A + K
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVR-------EH----LRFYARLKGLPKS 108
Query: 1357 AIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
I+ LGL + ++ S G ++ LSL+ AL+ +L+LDE T+ +D +
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 1411 DALIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 1460
I I E K ++++ H ++ CDRI ++ G++ +P+EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 42/239 (17%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG 1308
+ G+SF + + +GIVG +G+GKS + + ++ + G IL DG D+
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 1309 LMDLRKILG----IIPQS------PVLFSGTVRFNL-DPFSEHSDADLW--------EAL 1349
+LRKI G +I Q PV+ T+ + + H E L
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 1350 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1409
E + D RR L + E S G RQ + ++ AL K+L+ DE T A+DV
Sbjct: 136 ELVGIPDPERR----LKSYPHE----LSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 1410 TDALIQ---KTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 1463
A I K ++ E +++I H L + I DR+ ++ +GR++E EE+ N
Sbjct: 188 VQAQILDLLKELQREKG-TALILITHDLGVVAEI-ADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 6e-23
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
I+ +++ Y P L ++ I + V I+G +GAGKS++L +L +V+ G I
Sbjct: 3 MIEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1298 LIDGFDIAKFGLMDLRKIL---GIIPQSP-----------VLFS-----GTVR--FNLDP 1336
L +G I K +LRK+ G+I Q VL T R F L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL-- 119
Query: 1337 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396
FS+ A +ALER +G+ + + S GQ+Q ++++RAL+++ KI
Sbjct: 120 FSKEDKAQALDALER-----------VGILDKAYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVLE 1453
++ DE A++D + + +++ + + +I H+++ DRI+ L +GR++
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228
Query: 1454 YDTPEEL 1460
EL
Sbjct: 229 DGPASEL 235
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 7e-23
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 21/246 (8%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ D+ Y + +SF + G++G GAGK+++L + ++ + G++
Sbjct: 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIP-QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 1357
IDG D + +R+ +G++ + + T R NL F+ + L R +K
Sbjct: 61 IDGVDTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIKAR 113
Query: 1358 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
I L L + FS G +Q ++++RAL+ ILVLDE T+ +D+RT +
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT----R 169
Query: 1416 KTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469
+ + K ++ +H + + CDR+++L G V+ + E L +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNL 229
Query: 1470 KMVQST 1475
+ + +
Sbjct: 230 EEIFAF 235
|
Length = 245 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 8e-23
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 607 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 666
PL SG I I N F++ + L NINL +P VA+VG TG GK++L S ++G
Sbjct: 335 PLQSG--RIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 667 LP-----------PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 714
P P+S S +V+R VA V Q + T N+ G + +A+
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQAL 450
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
+ L LP G T +GE+G N+S GQKQ +++AR + + I D+ + +D+
Sbjct: 451 ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 775 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
Q + + T V++ ++L + + D I+++H G E+GT + L
Sbjct: 511 T-EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561
|
Length = 592 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 9e-23
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 41/210 (19%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----AVIRGT 680
L +++L + G +A++G +G GKT+L+ + G P + R
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 681 VAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
+ V Q +F + TV +NI FG A AR + +++ L+ L+ P
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE--- 130
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--- 789
+SGGQ+QRV++ARA+ + + D+PLSALDA + + +R EL
Sbjct: 131 --------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE-----LREELKELQ 177
Query: 790 ---GKTRVLVT-NQLHFLSQVDRIILVHEG 815
G T + VT +Q L+ DRI +++EG
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-22
Identities = 135/579 (23%), Positives = 233/579 (40%), Gaps = 106/579 (18%)
Query: 317 QFVGPLLLNQLLQSMQQDGPAW--IGYIYAFSIFVGVVLGVLC--EAQYFQNVMRVGFRL 372
F P+L +++ ++ G + + F +F ++ GVL A R+ R
Sbjct: 35 TFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLF-NIIAGVLVARHAD------RLAHRR 87
Query: 373 RSTLVAAVFRKSLR---ITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFR-- 427
R ++ F + ++ H R SG + T L + AL LW R
Sbjct: 88 RLAVLTEYFERIIQLPLAWHSQR---GSG---RALHT----LLRGTDALFGLWLEFMREH 137
Query: 428 --IIISLVLL-----YNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEG--------- 471
+++LV+L + ++ +L L +V+ + T ++ + TK+G
Sbjct: 138 LATLVALVVLLPLALFMNWRLSLVLVVLGIVYTL-ITTLVMRK----TKDGQAAVEEHYH 192
Query: 472 --LQRTDKRIGLM------NEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLA 523
IG + N I A A++ A + + LSW+ A L
Sbjct: 193 DLFAHVSDAIGNVSVVQSYNRIEAETQALRDIA------DNLLAAQMPVLSWWALASVLN 246
Query: 524 ACNSFILNSIPVLVTVVSFGMFTLLGGDLTPAR--AFTSLSLFAVLRFPLFMLPNMITQV 581
S I ++ ++ G + G L AF + + R L + I QV
Sbjct: 247 RAASTI-----TMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR--LDQVVAFINQV 299
Query: 582 VNANVSLKRMEEF--LL-----AEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLL 634
A ++EEF + + + G A+ + FS+D+ R +
Sbjct: 300 FMAA---PKLEEFFEVEDAVPDVRDPPGAIDLGRVKG--AVEFDDVSFSYDNS--RQGVE 352
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV----IRGTVA 682
+++ + G VAIVG TG GK++LI+ + P S D V +R +A
Sbjct: 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412
Query: 683 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL---PGGDVTEIGERGV 739
V Q + +FN ++ DNI G A E+ D + P G T +GERG
Sbjct: 413 VVFQDAGLFNRSIEDNIRVGR--PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470
Query: 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 797
+SGG++QR+++ARA+ + + I D+ SALD +V + G+T ++
Sbjct: 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM---KGRTTFIIA 527
Query: 798 NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
++L + DRI++ G V E G+F++L G F L
Sbjct: 528 HRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 54/225 (24%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ + + Y L LS T+ P + + ++G +G GK+++L + + + G IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAH 1353
IDG D+ G+ R+ +G++ Q LF + F L + +A RA
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLK------LRGVPKAEIRAR 110
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
+++ + +GL+ ++ S GQ+Q ++L+RAL R +L+LDE +A+D +
Sbjct: 111 VRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 1414 IQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455
+++ ++E + T + + H + DRI +++ GR+++
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-22
Identities = 85/339 (25%), Positives = 141/339 (41%), Gaps = 57/339 (16%)
Query: 1112 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV-------------GGLMIWLTATF 1158
+D + + + IR T +G WL++ L I+ GGLM
Sbjct: 275 FDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQITFGGLM------- 326
Query: 1159 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 1218
Q A Q S++ + I +LRLA +L A + + +
Sbjct: 327 ---QAVGAFGQ--VHSSLSWFIDNYDAIADWRATLLRLAEFR-QALEAAQM--DTEKPAR 378
Query: 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 1278
+ + G I E++ LR P+ +L L+F + P +++ I G +GAG
Sbjct: 379 TGRRIDFDDNADHG------ITLENLSLR-TPDGQTLLSELNFEVRPGERLLITGESGAG 431
Query: 1279 KSSMLNTLFRIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 1334
K+S+L L + GRI + + +PQ P L GT+R L
Sbjct: 432 KTSLLRALAGLWPWGSGRISMPADSALL------------FLPQRPYLPQGTLREALCYP 479
Query: 1335 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394
+ + SDA+L L + L D R LD + S G++Q L+ +R LL +
Sbjct: 480 NAAPDFSDAELVAVLHKVGLGDLAER----LD-EEDRWDRVLSGGEQQRLAFARLLLHKP 534
Query: 1395 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1433
K + LDEAT+A+D T+ + + ++EE T++ + HR
Sbjct: 535 KWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 49/225 (21%)
Query: 615 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 669
+ +RN ++ T L +I+L + G VA+VG +G GK++L+ + G P
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 670 VSDASAVIRGT---VAYVPQVS----WIFNATVRDNILFGSAFEP-------ARYEKAID 715
V + G YV Q W TV DN+ G + R E+ ++
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 716 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 775
+ L + P +SGG +QRV++ARA+ + DV + D+P SALDA
Sbjct: 118 LVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 776 GRQVFDRCIRGEL------SGKTRVLVTNQLH---FLSQVDRIIL 811
Q ++ EL +GKT +LVT+ + FL+ DR+++
Sbjct: 167 REQ-----LQEELLDIWRETGKTVLLVTHDIDEAVFLA--DRVVV 204
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 35/283 (12%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+FE+V RY + ++ TI + + ++G +G+GK++ L + R++E G IL
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN------LDPFSEHSDADLWEALER 1351
IDG DI+ ++LR+ +G + Q LF TV N L + + A E
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADEL 117
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
L +GLD SE + + S GQ+Q + ++RAL IL++DE A+D
Sbjct: 118 LDL--------VGLDP--SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1408 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
T +Q K +++E T++ + H ++ + DRI ++D+G +++YDTP+E+L+N
Sbjct: 168 PITRKQLQEEIKELQKELGK-TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
Query: 1464 EGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQ 1506
+ F V+ + + LR L L A+ R E DG+
Sbjct: 227 PANDF---VEDFFGESERGLRLLSLVSVADAVRRGE--PADGE 264
|
Length = 309 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 3e-22
Identities = 84/274 (30%), Positives = 129/274 (47%), Gaps = 32/274 (11%)
Query: 587 SLKRMEEFLL-------AEEKILLPNPPLTSGLP-AISIRNGYFSWDSKAERPTLLNINL 638
+L ME+ + P PL A++ N F++D RP L I+
Sbjct: 229 ALTDMEKMFDLLDVEAEVSDAPDAP--PLWPVRLGAVAFINVSFAYD--PRRPILNGISF 284
Query: 639 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVAYVP 685
IP+G VAIVG +G GK S I +L V+ S I R + VP
Sbjct: 285 TIPLGKTVAIVGESGAGK-STILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343
Query: 686 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNIS 742
Q + +FN T+ NI +G A E+ D LP G T +GERG+ +S
Sbjct: 344 QDTVLFNDTIAYNIKYGR--PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401
Query: 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 802
GG+KQRV++AR + N + I D+ SALD H + + +R +G+T +++ ++L
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLST 460
Query: 803 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
+ D II++ G + E GT E+L G L+ ++
Sbjct: 461 IIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 4e-22
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 50/247 (20%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 669
+ ++N S+ S L ++NLDI G V ++G +G GK++L+ + G P
Sbjct: 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 670 -------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--SAFEP-----ARYEKAI 714
V+D RG +A V Q ++ + TV +NI FG P R ++
Sbjct: 60 ILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
+ L+H L+ P +SGGQ+QRV++ARA+ VF+ D+PLS LDA
Sbjct: 119 KLLGLEHLLNRKPLQ-----------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 775 VGRQVFDRCIRGELS------GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 828
+ R + +R E+ G T + VT H QV+ + L +V +G + +
Sbjct: 168 L-RVL----MRSEIKKLHERLGTTTIYVT---H--DQVEAMTLADRIVVMNDGRIQQVGT 217
Query: 829 NGELFQK 835
EL+++
Sbjct: 218 PLELYER 224
|
Length = 338 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-22
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 29/245 (11%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+FE+V RY ++ L+ I + + ++G +G+GK++ + + R++E G I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN--LDPFSEHSDADLWEALERAHLK 1355
IDG DI + ++LR+ +G + Q LF TV N L P W K
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK-----WP-------K 107
Query: 1356 DAIRRNSLGLDAQVSEAGENF--------SVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
+ IR + L A V F S GQ+Q + ++RAL +L++DE A+D
Sbjct: 108 EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
Query: 1408 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
T +Q K +++E T++ + H ++ DRI ++ +G +++ TP+E+L +
Sbjct: 168 PITRDQLQEEFKRLQQELGK-TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
Query: 1464 EGSSF 1468
+ F
Sbjct: 227 PANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-22
Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 65/301 (21%)
Query: 1237 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
G I+ DV RY RP +P + L+F+ IVG TG+GKS++++ L R +L+
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 1295 GRILI--------------------------------------DGFDIAKF--------- 1307
++ G D F
Sbjct: 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282
Query: 1308 -------GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD-ADLWEALERAHLKDAIR 1359
L DLR + I+ Q P+LF+ ++ N+ E + D+ A + A + + I
Sbjct: 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIE 1342
Query: 1360 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419
D V G++ S GQ+Q ++++RALLR KIL+LDEAT+++D ++ LI+KTI
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 1420 E--EFKSCTMLIIAHRLNTIIDCDRILLLDS-----GRVLEYDTPEELLSNEGSSFSKMV 1472
+ + T++ IAHR+ +I D+I++ ++ V + T EELLS + + K V
Sbjct: 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYV 1462
Query: 1473 Q 1473
+
Sbjct: 1463 K 1463
|
Length = 1466 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 6e-22
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 43/219 (19%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP-- 685
L ++NLDI G V ++G +G GKT+ + M+ L + I G V +P
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLR-MIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 686 --QVSWIF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGG 729
++ +F + TV DNI FG P R + ++ ++H LD P
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK- 129
Query: 730 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 789
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + Q +R EL
Sbjct: 130 ----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ-----MRAELK 174
Query: 790 ------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 821
G T + VT +Q+ ++ DRI ++++G +++ G
Sbjct: 175 RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 7e-22
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 45/246 (18%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
P I +R S+ +R L ++LD+P G ++AI+GG+G GK++L+ +LG L P D
Sbjct: 7 PLIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--D 61
Query: 673 ASAV-----------------IRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAI 714
+ IR + + Q +F++ TV +N+ F P R +
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-----PLREHTKL 116
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVN-------ISGGQKQRVSMARAVYSNSDVFIFDDP 767
SL +L L+ + +G RG +SGG ++RV++ARA+ + ++ D+P
Sbjct: 117 P-ESLIRELVLM---KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 768 LSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTF 823
S LD + V D IR EL+ G T ++VT+ L L+ DR+ ++ +G V EGT
Sbjct: 173 TSGLDP-ISAGVIDELIR-ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 824 EDLSNN 829
E+L +
Sbjct: 231 EELLAS 236
|
Length = 263 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 1e-21
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 51/218 (23%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 669
+SI N FS+ + E+ L N++L++ G +A++G +G GK++L+ + G+L P
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 670 ------VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 723
VSD + ++ + Q ++F+ T+R+N+
Sbjct: 60 TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
G SGG++QR+++AR + ++ + + D+P LD RQ+
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SL 140
Query: 784 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821
I L KT + +T+ L + +D+I+ + G + +G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 41/234 (17%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 1307
L ++ IP + ++G +G GKS++L +L R+ +L G++L DG DI K
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 1350
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV- 134
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
KD + ++LGL S GQ+Q L ++RAL ++L+LDE T+A+D
Sbjct: 135 ----KDRLHDSALGL-----------SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 1411 DALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
I++ I+E K T++I+ H + DR G ++EY E++ +N
Sbjct: 180 TGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 27/202 (13%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-------SAVIRGTVA 682
P L +++ ++ G +AIVG G GK++L+ A+LG L P S + R +
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG 71
Query: 683 YVPQ---VSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 737
YVPQ + F +VRD +L G R D + L+ + ++E+ +R
Sbjct: 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV---GLSELADR 128
Query: 738 GV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRV 794
+ +SGGQ+QRV +ARA+ + D+ + D+P + +D ++ +R EL G T +
Sbjct: 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK-TQEDIYELLR-ELRREGMTIL 186
Query: 795 LVTNQLHFLSQV----DRIILV 812
+VT H L V DR++L+
Sbjct: 187 VVT---HDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-21
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 40/233 (17%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 1307
L ++ IP + ++G +G GKS++L L R+ +L G +L+DG +I K
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFN--------------LDPFSEHS--DADLWEALER 1351
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEV-- 139
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
KD + +++LGL S GQ+Q L ++RAL + ++L++DE T+A+D +
Sbjct: 140 ---KDRLHKSALGL-----------SGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
I++ I E K T++I+ H + D G ++E+ +++ +N
Sbjct: 186 LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 2e-21
Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 20/240 (8%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+F++V Y +L +S IVG +GAGKS+++ + R+++ G IL
Sbjct: 4 IEFKEV--SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLK 1355
IDG DI ++DLR+ +G++ Q P LF GTV+ N++ + D+ L
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS----- 116
Query: 1356 DAIRRNSLGLDAQVSEAG-ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
+GL+ + + +N S G+ Q +S++R L ++L+LDE T+A+D + +I
Sbjct: 117 ------IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 1415 QKTIRE--EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
++ I + + T++ I H + D L+ G ++EY + +N + +K+
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 3e-21
Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 22/235 (9%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIVELERG 1295
I+ E + RY L +SF++ + V IVG G+GKS+ +LN L E G
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAG 62
Query: 1296 RILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEAL 1349
I + G +++ + D+R+ +G++ Q+P F G V F L E+ E +
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMV 118
Query: 1350 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1409
ER A+R+ +G++ ++ S GQ+Q ++++ L + I++LDEAT+ +D R
Sbjct: 119 ERVD--QALRQ--VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 1410 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462
+ +T+R+ E K T+L I H L+ DR+++++ G +LE TPEE+
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 3e-21
Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 27/241 (11%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ +++ + + VL G+S ++ + V I+G +G+GKS++L L + E + G I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1299 IDGFDI-AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-------EAL 1349
+DG D+ K ++ LR+ +G++ Q LF TV N+ + A + EA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV------TLAPVKVKKLSKAEAR 114
Query: 1350 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-- 1407
E+A + + + +GL + S GQ+Q ++++RAL K+++ DE T+A+D
Sbjct: 115 EKA--LELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170
Query: 1408 -VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 1465
V + K + EE TM+I+ H + + DR++ +D G+++E PEE N
Sbjct: 171 LVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228
Query: 1466 S 1466
S
Sbjct: 229 S 229
|
Length = 240 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 4e-21
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 33/218 (15%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI--RGTVA 682
L ++NL++P GSLVA++G +G GK++L+ + G P S DA+ V +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 683 YVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
+V Q +F + TVRDNI FG A AR E+ +++ L+ D P
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN------ 129
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSGKT 792
+SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + E+ T
Sbjct: 130 -----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH-VT 183
Query: 793 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
V VT +Q + DRI+++ G +++ G+ +++ ++
Sbjct: 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 7e-21
Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 34/242 (14%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER--- 1294
++ E++ RY V++G+S ++ + VG++G GAGK+ T F IV L +
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKT----TTFYMIVGLVKPDS 54
Query: 1295 GRILIDGFDIAKFGLMDLRKILGII--PQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 1351
G+IL+DG DI K M R LGI PQ +F TV N+ LE
Sbjct: 55 GKILLDGQDITKLP-MHKRARLGIGYLPQEASIFRKLTVEENILA-----------VLEI 102
Query: 1352 AHLKDAIRRNSL-------GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
L R L + + S G+R+ + ++RAL K L+LDE A
Sbjct: 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
Query: 1405 AVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
VD IQK I+ + + +LI H + + DR ++ G+VL TPEE+ +
Sbjct: 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
Query: 1463 NE 1464
NE
Sbjct: 223 NE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-20
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 675
I N F + R L N++L + G +VA+VG G GK++L+ A+ G L P S
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EI 56
Query: 676 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
+I G ++ + +R I + V L
Sbjct: 57 LIDGK-----DIAKLPLEELRRRIGY--------------VPQL---------------- 81
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 795
SGGQ+QRV++ARA+ N D+ + D+P S LD ++ + G+T ++
Sbjct: 82 ------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 796 VTNQLHFLSQV-DRIILVHEG 815
VT+ DR+I++ +G
Sbjct: 136 VTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 57/206 (27%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------------DA 673
++ L +++L+I G +VA++G +G GK++L+ + G P S D
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 674 SAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
+R + V Q +F + TV +NI G
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------ 100
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSG 790
+SGGQ+QRV++ARA+ + DV + D+P SALD + R+ ++ G
Sbjct: 101 --------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP-ITRREVRALLKSLQAQLG 151
Query: 791 KTRVLVTNQLHFLSQV-DRIILVHEG 815
T VLVT+ L +++ DR++++ +G
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+FE+V Y P L +SF IP + V + G +GAGKS++L ++ RG+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1299 IDGFDIAKFGLMD---LRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDA---DLWE 1347
++G D+++ + LR+ +G++ Q L V L + + E
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 1348 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
L+ LK R L +Q+S G++Q ++++RA++ + +L+ DE T +D
Sbjct: 121 VLDLVGLKHKARA----LPSQLSG-------GEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 1408 VRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEYDTPEE 1459
I + EE T+L+ H L + R+L L+ GR++ ++
Sbjct: 170 PDLSWEIMRLF-EEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 1301
E++ Y+ + +L LS + + + + G+ GAGK+++ L +++ G IL++G
Sbjct: 3 ENISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 1302 FDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA---LERAHLKD 1356
I + RK +G + Q LF+ +VR L + DA +A L+ L
Sbjct: 62 KPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
R+ L L S GQ+Q L+++ ALL +L+ DE T+ +D + + +
Sbjct: 119 LKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 1417 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1451
IRE +++I H + CDR+LLL +G +
Sbjct: 168 LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 3e-20
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 45/250 (18%)
Query: 1239 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 1294
I+ +++ + + L+ +S IP + G++G +GAGKS TL R + LER
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS----TLIRCINLLERP 57
Query: 1295 --GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD---L 1345
GR+L+DG D+ +L R+I G+I Q FNL S + D L
Sbjct: 58 TSGRVLVDGQDLTALSEKELRKARRQI-GMIFQ---------HFNL--LSSRTVFDNVAL 105
Query: 1346 WEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1398
LE A K I+ L GL + S GQ+Q ++++RAL K+L+
Sbjct: 106 --PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
Query: 1399 LDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 1453
DEAT+A+D T I K I E T+++I H ++ + I CDR+ ++D+GR++E
Sbjct: 164 CDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRI-CDRVAVIDAGRLVE 221
Query: 1454 YDTPEELLSN 1463
T E+ S+
Sbjct: 222 QGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-20
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 17/218 (7%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-L 1312
L G+S T+ P + ++G GAGKS+++ L + + G ILIDG +A D L
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 1313 RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDA 1367
+ + Q L +V N+ +P D +A+ R ++ + R LGLD
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID-RKAMRRR-ARELLAR--LGLDI 137
Query: 1368 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFKS-- 1424
+ S+ QRQ++ ++RAL +++L+LDE TAA+ V+ T+ L IR K+
Sbjct: 138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIR-RLKAQG 195
Query: 1425 CTMLIIAHRLNTIID-CDRILLLDSGR-VLEYDTPEEL 1460
++ I+HRL+ + + DRI +L GR V T E
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233
|
Length = 500 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 4e-20
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 60/218 (27%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 669
I +RN + K L +I+L + G + ++G G GKT+LI +LG L P
Sbjct: 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 670 ------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD 722
+ ++ + Y+P+ ++ N TVR+N+
Sbjct: 58 KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL--------------------- 96
Query: 723 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
SGG KQR+++A+A+ + ++ I D+P S LD R+ F
Sbjct: 97 -------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDP-ESRREFWE 136
Query: 783 CIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMV 817
+R EL GKT +L ++ L ++ DR+ +++ G +
Sbjct: 137 LLR-ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 46/235 (19%)
Query: 625 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT--- 680
D+ + L +++L +P G + I+G +G GK++LI + G E P + S ++ GT
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70
Query: 681 -------------VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKA---------IDVT 717
+ + Q + ++ TV +N+ E A KA +++
Sbjct: 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKAEIEERVLELLELV 128
Query: 718 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 777
L+ D P +SGGQKQRV +ARA+ +N V + D+ SALD +
Sbjct: 129 GLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 778 QVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+ R I EL G T VL+T+++ + ++ DR+ ++ +G V EEGT E++ N
Sbjct: 178 SILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 4e-20
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 32/243 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+K E++ Y + L G++ I + I+G GAGKS++ L I++ GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1299 IDG--FDIAKFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWE 1347
DG D ++ GLM LR+ +G++ Q P LFS +V NL + +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 1348 ALER---AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
AL+R HLKD + S GQ++ ++++ L+ K+LVLDE TA
Sbjct: 125 ALKRTGIEHLKD--------------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
Query: 1405 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELL 1461
+D + I K + E K T++I H ++ + + CD + ++ GRV+ P+E+
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
Query: 1462 SNE 1464
+ +
Sbjct: 231 AEK 233
|
Length = 283 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 4e-20
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 47/241 (19%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 668
PA+ IRN S+ + +I+LDI G V ++G +G GKT+L+ + G E P
Sbjct: 4 PALEIRNVSKSFGDF---TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 669 -------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--------SAFEPARYEK 712
++D R + V Q +F + TV +N+ FG A AR E+
Sbjct: 61 EILLDGEDITDVPPEKRP-IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE 119
Query: 713 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
A+++ L+ D P +SGGQ+QRV++ARA+ V + D+PLSALD
Sbjct: 120 ALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 773 AHVGRQVFDRCIRGEL------SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFED 825
A + Q+ R EL G T V VT +Q L+ DRI ++++G +++ GT E+
Sbjct: 169 AKLREQM-----RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223
Query: 826 L 826
+
Sbjct: 224 I 224
|
Length = 352 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 5e-20
Identities = 118/563 (20%), Positives = 230/563 (40%), Gaps = 85/563 (15%)
Query: 959 IYSLLSFG--QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 1016
I+SL+ G Q +++ +S+ + + + K L L S+ F NP ++ +
Sbjct: 100 IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSD 159
Query: 1017 FAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 1075
L ++ + F+ +F S L ++ + I + L Y +
Sbjct: 160 LDFYLEQVNAGIGTKFITIFT-YASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICN 218
Query: 1076 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 1135
+ K+ + + + EAL G+ T+ +Y + S +Y L
Sbjct: 219 KKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL---K 275
Query: 1136 ANRWLAIRLEIVGGLMI-------WLTATFAV--VQNGSAENQEAFASTMGLLLSYALNI 1186
AN ++ + ++ G ++ W + + N N S + +LL +
Sbjct: 276 ANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGV---L 332
Query: 1187 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 1246
S+ + L ++ E + ++E + E+ + PLV E+N I+F++V
Sbjct: 333 ISMFMLTIILPNITE-YMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKNVRF 390
Query: 1247 RY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFD 1303
Y R ++ + L+FT+ VG +G GKS++L + R+ + G I+I D +
Sbjct: 391 HYDTRKDVE-IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449
Query: 1304 IAKFGLMDLRKILGIIPQSPVLFSGTVRFN----------LDPFSEHSDADLWEALERAH 1353
+ L R +G++ Q P+LFS +++ N L+ S + + D ++ E +
Sbjct: 450 LKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509
Query: 1354 LKDAIRRNSLG------------------------------------------------L 1365
+++ R G
Sbjct: 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKY 569
Query: 1366 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEFK 1423
+ V S GQ+Q +S++RA++R KIL+LDEAT+++D +++ L+QKTI + +
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE 629
Query: 1424 SCTMLIIAHRLNTIIDCDRILLL 1446
+ +IIAHRL+TI + I +L
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 7e-20
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 1246 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 1305
+ Y +L+ +S ++ + + I G +G GKS++L + ++ G +L +G D++
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 1306 KFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLG 1364
R+ + Q+P LF TV NL P+ + +RA D + R +L
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALP 123
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV----RTDALIQKTIRE 1420
D+ +++ S G++Q ++L R L KIL+LDE T+A+D + +I + +RE
Sbjct: 124 -DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 1421 E 1421
+
Sbjct: 183 Q 183
|
Length = 223 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 8e-20
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA 675
+ L ++L++ G +VA++G G GKT+L+ ++G + P S
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 676 VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
R +AYVP+ IF TV +N+L G+ + + D+ + +L P +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV---YELFP-----RL 126
Query: 735 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGEL 788
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ + +R E
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE- 185
Query: 789 SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 837
G T +LV F L DR ++ G + GT +L + ++ + +
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 8e-20
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
+L G+S + P + + I+G GAGKS++L L + + G + ++G + + +L +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1315 ILGIIPQSPVL-FSGT----VRFNLDPFSEHSDAD-----LWEALERAHLKDAIRRNSLG 1364
++PQ+ L F T V+ P + + +AL L R+
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQKTI 1418
L S G++Q + L+R L + + L LDE T+A+D+ +
Sbjct: 136 L-----------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1419 REEFKS-CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
R+ + +L + H LN DRI+LL GRV+ +P+++L++E
Sbjct: 185 RQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232
|
Length = 259 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 8e-20
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 56/236 (23%)
Query: 1234 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 1293
P + V + G+SF+I + +G+VG +G GKS++ + + E
Sbjct: 15 PVGKGFGKKRYV--------KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 1294 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 1353
G IL +G DI K E + E LE+
Sbjct: 67 SGEILFEGKDITKLS-----------------------------KEERRERVLELLEKVG 97
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA- 1412
L + L E S GQRQ + ++RAL K++V DE +A+DV A
Sbjct: 98 LPEEF------LYRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147
Query: 1413 ---LIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 1463
L++ ++EE T L I+H L+ + I DRI ++ G+++E EE+ SN
Sbjct: 148 ILNLLKD-LQEEL-GLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 9e-20
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 35/219 (15%)
Query: 627 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG---------------ELPPVS 671
+ L ++NL+I G VAIVG +G GK++L++ +LG +L +S
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLS 73
Query: 672 DA--SAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDL-D 724
+ + + R + +V Q + + + TV +N+ R ++A + L D
Sbjct: 74 EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED 133
Query: 725 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
L +E+ SGGQ+QRV++ARA+ +N + + D+P LD+ ++V + +
Sbjct: 134 RLLKKKPSEL-------SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--L 184
Query: 785 RGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 820
EL+ GKT ++VT+ DR+I + +G ++EE
Sbjct: 185 LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 9e-20
Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 29/220 (13%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRG 679
L +++LDIP G LVA++G +G GKT+L+ + G E P +D R
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 680 TVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
V +V Q +F + TV DN+ FG + P E V L L L+ +
Sbjct: 76 -VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHEL---LKLV---QLDW 128
Query: 734 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSG 790
+ +R +SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + EL
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-H 187
Query: 791 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
T V VT +Q L DR++++++G +++ GT +++ ++
Sbjct: 188 VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 615 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
I ++N ++ E+ L ++L I G VAIVG +G GK++L++ + G P S
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 672 -------------DASAVIRG-TVAYVPQVSWIFN----ATVRDNILFGSAFEP------ 707
A R + +V Q FN T +N+
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQS---FNLLPDLTALENVELPLLLAGVPKKER 117
Query: 708 -ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 766
R E+ ++ L L+ P +SGGQ+QRV++ARA+ ++ + + D+
Sbjct: 118 RERAEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADE 166
Query: 767 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEG 815
P LD+ G++V + +R + +G T V+VT+ DRII + +G
Sbjct: 167 PTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 40/209 (19%)
Query: 632 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------DASAVIRGTVA 682
L +++LD+ G ++A+ G G GKT+L + G + S + R ++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 683 YVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTSL--------QHDLDLLPGGDVT 732
YV Q +F +VR+ +L G A E+A V +H L L
Sbjct: 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL------- 127
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--G 790
SGGQKQR+++A A+ S D+ IFD+P S LD +V + + EL+ G
Sbjct: 128 ---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE--LIRELAAQG 176
Query: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMVK 818
K +++T+ FL++V DR++L+ G +
Sbjct: 177 KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 1312
L ++ I + V IVG +G+GKS++LN L + + G +LI+G D+ K +L
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 1313 ---RKILGIIPQS-PVLFSGTVRFNLD-PF------SEHSDADLWEALERAHLKDAIRRN 1361
RK +G + Q+ +L TV N++ P + E LE L+D + +
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1421
SE S GQ+Q ++++RAL+ KI++ DE T +D +T + + +RE
Sbjct: 139 K------PSEL----SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 1422 FKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
K T++++ H DR++ L G++ E
Sbjct: 189 NKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGT 680
L +INL + G VAI+G +G GK++L+ + G P S
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 681 VAYVPQ----VSWIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGG 729
+ YV Q + W TV DN+ G A R ++ +++ L D P
Sbjct: 74 IGYVFQEDALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH- 129
Query: 730 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDRCIR 785
+SGG +QRV++ARA+ + + + D+P ALDA + ++ +
Sbjct: 130 ----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR--LW 177
Query: 786 GELSGKTRVLVTNQLH---FLSQVDRIIL 811
E KT +LVT+ + +L+ DR+++
Sbjct: 178 EET-RKTVLLVTHDVDEAVYLA--DRVVV 203
|
Length = 248 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 1e-19
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ E+V Y P+ P L ++ I + +GI+G+ G+GKS++ L ++ ++G++L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1299 IDGFDIAKFG-LMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1355
+ G D F L +RK++GI+ Q+P F G TV +L E+ E +R
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 1414
A +GL+ + + S GQ Q ++L+ L + L+ DE T+ +D + A++
Sbjct: 121 LA----EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 1415 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463
++ + K T++ I H L + D DRI+++D G+++ PE +LS+
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 36/231 (15%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ +++ + VL G+ T+ + V I+G +G+GKS++L + + E + G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1299 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA------------- 1343
IDG + K + +LR+ +G++ Q FNL P H
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQ---------FNLFP---HLTVLENITLAPIKVKG 106
Query: 1344 -DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1402
EA ERA + + + +GL + S GQ+Q ++++RAL K+++ DE
Sbjct: 107 MSKAEAEERAL--ELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 1403 TAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1451
T+A+D + +++ + TM+++ H + + DR++ +D GR+
Sbjct: 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 34/221 (15%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVI 677
L ++L +P G +VA++G G GKT+L+ ++G LPP S
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 678 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
R + YVP+ IF TV +N+L G A A+ + ++ +L P +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFP-----RLK 123
Query: 736 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELS 789
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ R +R E
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-- 181
Query: 790 GKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 829
G T +LV F L DR ++ G V EGT +L +
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 12/213 (5%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
L +SFT+ P V ++G GAGKS++ + L R+ + G+I + G D+ + L
Sbjct: 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74
Query: 1314 KILGIIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--LGLDAQVS 1370
++ G++ Q P L +VR NL A L L RA + I LGL +
Sbjct: 75 RL-GVVFQQPTLDLDLSVRQNL-----RYHAAL-HGLSRAEARARIAELLARLGLAERAD 127
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTML 1428
+ + G R+ + ++RALL R +L+LDE T +D + A I +R + ++L
Sbjct: 128 DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVL 187
Query: 1429 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1461
H ++ I DR+++L GRVL EL
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 2e-19
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 20/221 (9%)
Query: 1260 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 1315
I + I+G +G+GKS+ + L R++E G+I IDG +I K ++L RK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 1316 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374
+G++ Q LF T+ N E E E+A + ++ +GL+ +
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA--LELLKL--VGLEEYEHRYPD 128
Query: 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TML 1428
S G +Q + L+RAL IL++DEA +A+ D LI+ ++++E K T++
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSAL----DPLIRDSMQDELKKLQATLQKTIV 184
Query: 1429 IIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSF 1468
I H L+ I DRI+++ +G +++ TP+E+L N + +
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 1311
+L +S P + I+G +GAGKS++LN L R G +LI+G + K
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---S 79
Query: 1312 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1370
RKI+G +PQ +L TVR L F+ A L+ GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-FA-------------AKLR--------GL----- 112
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLI 1429
S G+R+ +S++ L+ +L LDE T+ +D + + +R + T++
Sbjct: 113 ------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 1430 IAHRLNTII--DCDRILLLDSGRVL 1452
H+ ++ I D++LLL GRV+
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-19
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+ G++F + + G +G GAGK++ + L ++ G + G+D+ + +R
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVR 65
Query: 1314 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1372
+ +GI+PQ + T R NL+ EA ERA ++ + LG A
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA--EELLELFELGEAAD--RP 121
Query: 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIA 1431
+S G R+ L ++ +L+ + +L LDE T +D RT I IR + T+L+
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 1432 HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
H + CDRI ++D GR++ TPEEL G
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 4e-19
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 1247 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 1306
+ L +SF I ++VGI+G GAGKS++L + I + G++ + G +A
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVA- 91
Query: 1307 FGLMDLRKILGIIPQSPVLFSG--TVRFN---LDPFSEHSDADLWEALERAHLKDAIRRN 1361
L++L G P+ +G + L + D + E +E A L D I
Sbjct: 92 -PLIELG--AGFDPE----LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI--- 141
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-- 1419
D V + +S G L+ S A IL+LDE A D A +K +
Sbjct: 142 ----DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA---AFQEKCLERL 190
Query: 1420 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459
E K+ T+++++H L I CDR + L+ G++ +PEE
Sbjct: 191 NELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-19
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 44/225 (19%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 680
L I+L + G +V I+G +G GK++L+ + G L S + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 681 --VAYVPQVSWIFNA----TVRDNILF------GSAFEPARYEKAIDVTS---LQHDLDL 725
V V Q FN TV +N+ + AR EKA+++ L D
Sbjct: 77 RKVGMVFQQ---FNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALELLEKVGLADKADA 132
Query: 726 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
P +SGGQ+QRV++ARA+ + V +FD+P SALD + +V D
Sbjct: 133 YPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 786 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
G T ++VT+++ F +V DR+I + +G + EEG E+ +N
Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-19
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 1280 SSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILGIIPQSPVLF-SGTVRFNLDP- 1336
S++L + +++ G IL+DG D LRK +G++ Q P LF TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1337 -FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395
+ +DA EALER L D + R +G S GQ+Q ++++RALL++ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 1396 ILVLDEATA 1404
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 6e-19
Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 66/226 (29%)
Query: 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-- 673
+ N + R L +++L I G +V I+G G GK++L+ + G L P S
Sbjct: 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 674 ----------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 723
+ +AYVPQ L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQA-----------------------------------L 82
Query: 724 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ--VF 780
+LL + + +R N +SGG++QRV +ARA+ + + D+P S LD + Q +
Sbjct: 83 ELL---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLD--IAHQIELL 137
Query: 781 DRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 821
+ R GKT V+V LH L+ DR+IL+ +G + +G
Sbjct: 138 ELLRRLARERGKTVVMV---LHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 9e-19
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 12/219 (5%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
L +S + D I+G TG+GKS +L T+ ++ + G+IL++G DI L ++
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 1315 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373
+ +PQ+ LF TV N+ + D E + I LG+D ++
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVL---EIAE-MLGIDHLLNRKP 127
Query: 1374 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQ--KTIREEFKSCTMLII 1430
E S G++Q ++++RAL+ KIL+LDE +A+DVRT + L + K IR+EF T+L +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHV 186
Query: 1431 AHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
H D++ ++ +G++++ PEE+ + F
Sbjct: 187 THDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 1e-18
Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 30/257 (11%)
Query: 1234 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIV 1290
++F+ V Y P L+ +SF+IP ++G G+GKS+ ++N L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 1291 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSP------VLFSGTVRFNLDPFSEHSDAD 1344
+ +I +DG + + D+R+ +GI+ Q+P V F L+
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------- 112
Query: 1345 LWEALERAHLKDAIRR--NSLG-LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
A+ R + +R +G LD SE N S GQ+Q ++++ L KI++LDE
Sbjct: 113 --RAVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 1402 ATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1459
+T+ +D I K IR+ + + T++ I H ++ D++L+LD G++L +P E
Sbjct: 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVE 229
Query: 1460 LLSNEGSSFSKMVQSTG 1476
+ S +M++ G
Sbjct: 230 IFSKV-----EMLKEIG 241
|
Length = 282 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 18/234 (7%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+ +DV Y LP + T+P + V I+G +GAGKS++LN + G IL
Sbjct: 2 LALDDVRFSYG-HLP--MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1357
I+G D + + ++ Q LF+ TV N+ L A +R ++ A
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKVEAA 113
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 1413
+ +GL + S GQRQ ++L+R L+R IL+LDE +A+D +R + AL
Sbjct: 114 AAQ--VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466
+ + E + T+L++ H DR++ LD+GR+ + +ELLS + S
Sbjct: 172 VSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 1239 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
++ +V Y L +S ++ + V +VG +G GKS++L + + G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWE---- 1347
+L+DG + G + Q L V L+ A+ E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLE-LQGVPKAEARERAEE 114
Query: 1348 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
LE L Q+S G G RQ ++L+RAL +L+LDE +A+D
Sbjct: 115 LLELVGLSGFENA----YPHQLS--G-----GMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 1408 VRTDALIQ----KTIREEFKSCTMLIIAHRLNTIID-----CDRILLLDS--GRVLE 1453
T +Q RE K T+L++ H ID DR+++L + GR++
Sbjct: 164 ALTREQLQEELLDIWRETGK--TVLLVTHD----IDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E++ RY + L G+S T+ P G++G GAGK++++ L + G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPF-------SEHSDADLWEALE 1350
IDG D+ K LR+ +G +PQ ++ TVR LD S+ A + E LE
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
+L D ++ S G R+ + +++AL+ IL++DE TA +D
Sbjct: 117 LVNLGDR-------AKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1411 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1452
+ + E + +++ H + + C+++ +L+ G+++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+F +V Y P L G++ +I + V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1299 IDGFDIAKF---GLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 1354
++G D++ + LR+ +G++ Q +L V N+ E + E +R +
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--V 117
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
A+ +GL + S G++Q ++++RA++ IL+ DE T +D T I
Sbjct: 118 PAALEL--VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 1415 QKTIREEFKSCTMLIIAHRLNTIIDC--DRILLLDSGRV 1451
+++ K+ T +++A ++D R++ L+ G++
Sbjct: 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-18
Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 1260 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI---- 1315
S I + I+G +G+GKS+M+ L R++E RG++LIDG DIAK +LR++
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 1316 LGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374
+ ++ QS L + F E + + E E+A DA+R+ +GL+ +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKA--LDALRQ--VGLENYAHSYPD 163
Query: 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAH 1432
S G RQ + L+RAL IL++DEA +A+D +RT+ + + T++ I+H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 1433 RLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470
L+ + DRI ++ +G V++ TP+E+L+N + + +
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
L +SF +P +++G++GR GAGKS++L L I + G + + G + GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1315 ILGIIPQSPVLFSGT--VRFNLDPFSEHSDADLWEALER----AHLKDAIRRNSLGLDAQ 1368
G P+ +G + N S ++ E ++ + L D I D
Sbjct: 93 -GGFNPE----LTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGDFI-------DLP 139
Query: 1369 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1428
V +S G + L+ + A IL++DE A D Q+ +RE K +
Sbjct: 140 VK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 1429 IIA-HRLNTIID-CDRILLLDSGRVLEYD 1455
I+ H ++I CDR L+L+ G++
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 1308
L ++ I + ++G +G GKS+ L TL R+ +L G +L+DG DI +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1351
+ LRK +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD---- 134
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+KD +++++LGL S GQ+Q L ++RAL ++L++DE T+A+D +
Sbjct: 135 -EVKDRLKKSALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
I++ I+E K T++I+ H + D+ +G ++E+ +L +N
Sbjct: 183 LKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 83.2 bits (207), Expect = 3e-18
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 61/217 (28%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ + R+ L G+S ++ + ++G GAGKS+++ L + + + G IL
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358
+DG V F+ +DA
Sbjct: 59 VDG--------------------KEVSFASP-------------------------RDA- 72
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKT 1417
RR + + Q+S VG+RQ++ ++RAL R +++L+LDE TAA+ + L K
Sbjct: 73 RRAGIAMVYQLS-------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KV 124
Query: 1418 IREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 1451
IR ++ ++ I+HRL+ + + DR+ +L GRV
Sbjct: 125 IR-RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 3e-18
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+L +S T+ P + V I+G GAGKS++L L + + G + ++G +A + +L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 1314 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDAD---LWEALER---AHLKDAIRRNS 1362
+ ++PQ L F TV P D + AL + AHL R+
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG---RDY 132
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQK 1416
L S G++Q + L+R L + + L+LDE T+A+D+ + +
Sbjct: 133 PQL-----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181
Query: 1417 TIREEFKS--CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
R+ ++++ H LN DRI+LL GR++ TP E+L+ E
Sbjct: 182 LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 35/214 (16%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIRGT 680
+++ I G + +VG +G GK++L A+LG +L +S IR
Sbjct: 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82
Query: 681 -VAYVPQVSWIFNA-----TVRDNILFGSAFEPARYEKAIDVTSLQHD--LDLLPG-GDV 731
+ V Q ++ T+ + I EP R + + + L LL G G
Sbjct: 83 EIQMVFQDP--MSSLNPRMTIGEQIA-----EPLRIHGKLSKKEARKEAVLLLLVGVGLP 135
Query: 732 TEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGEL 788
E+ R + +SGGQ+QRV++ARA+ N + I D+P SALD V Q+ D + ++ EL
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL 195
Query: 789 SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
G T + +T+ L ++++ DR+ +++ G + EEG
Sbjct: 196 -GLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 6e-18
Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 49/280 (17%)
Query: 587 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN------GYFSWDSKAERPTLL--NINL 638
L L E+ I LP P +S+RN + +++
Sbjct: 253 GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312
Query: 639 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQVSWI 690
D+ G + +VG +G GK++L + G LPP S D ++ +
Sbjct: 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 691 F---------NATVRDNI--------LFGSAFEPARYEKAIDVTSLQHD-LDLLPGGDVT 732
F TV D + A AR + +++ L + LD P
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE--- 429
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 790
+SGGQ+QRV++ARA+ + I D+P+SALD V QV + + ++ EL G
Sbjct: 430 --------LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-G 480
Query: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
T + +++ L + + DR+ ++++G + EEG E + N
Sbjct: 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 8e-18
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 39/225 (17%)
Query: 634 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 677
L+ + +P + AI G +G GKT+LI + G P + D+ I
Sbjct: 14 LDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE 73
Query: 678 RGTVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDV 731
+ + YV Q + +F + +VR N+ +G + +E+ I++ + H L LPG
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG--- 130
Query: 732 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 791
+SGG+KQRV++ RA+ S+ + + D+PL+ALD ++ R L +
Sbjct: 131 --------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER--LHAE 180
Query: 792 TRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGEL 832
+ + H L +V DR++++ +G V G ++ + +L
Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-18
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DAS--AV 676
L +I+LDI G LVA++G +G GK++L+ + G P + D S AV
Sbjct: 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV 74
Query: 677 IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
V +V Q + + TV DNI FG R +A ++ L L+ + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTR 793
+SGGQ+QRV++ARA+ V + D+P ALDA V R+ R +R + G T
Sbjct: 135 PA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV-RKELRRWLRKLHDRLGVTT 191
Query: 794 VLVT-NQLHFLSQVDRIILVHEGMVKEEGT 822
V VT +Q L DR++++++G +++ G
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 1e-17
Identities = 57/227 (25%), Positives = 119/227 (52%), Gaps = 13/227 (5%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------DIAKFG 1308
+L ++ IP + GI+G +G+GKS++L L R++E+ +I +DG DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1309 LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
+ LRK +G++ Q P F ++ N+ P H + E + +++ +R+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI--KKIVEECLRKVGLWKE 142
Query: 1367 A--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1424
+++ S GQ+Q L+++RAL + K+L++DE T+ +D+ I+K I E
Sbjct: 143 VYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE 202
Query: 1425 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470
++I++H + D + L +G ++E+ + E+ ++ + ++
Sbjct: 203 IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
VL +S + + G +G GAGK++ + + +++ + G I DG K ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 1314 KILGIIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDA 1367
+ +G + ++P + T R NL + D E L+ LKD+ ++
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID--EVLDVVGLKDSAKK------- 122
Query: 1368 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CT 1426
+V FS+G +Q L ++ ALL +L+LDE T +D +++ I T
Sbjct: 123 KVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1427 MLIIAHRLNTI-IDCDRILLLDSGRVLE 1453
+LI +H L+ I DRI +++ G+++E
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 1258 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317
G+SF + + G++G GAGK++ + L +++ GR + G D+ + ++R+ +G
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 1318 IIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGE 1374
I+ Q + T NL A L+ + A ++ I + +GL +
Sbjct: 77 IVFQDLSVDDELTGWENLYIH-----ARLY-GVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 1432
+S G R+ L ++R+L+ R ++L LDE T +D +T A + + I + E T+L+ H
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
Query: 1433 RLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
+ CDR+ ++D GR++ TPEEL
Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-17
Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 22/241 (9%)
Query: 1238 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
SIK E++ Y P L ++ I + VG++G TG+GKS+++ L +++
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 1295 GRILIDGFDIA--KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALE 1350
G+I+IDG DI K L D+RK +G++ Q P LF T+ ++ +L L
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI----AFGPINL--GLS 115
Query: 1351 RAHLKDAIRR--NSLGLDAQVSEAGENF--SVGQRQLLSLSRALLRRSKILVLDEATAAV 1406
+++ ++R N +GLD + + F S GQ++ ++++ + KIL+LDE TA +
Sbjct: 116 EEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 1407 D--VRTDALIQ-KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
D R + L + K + +E+ T+++++H + + DRI++++ G+ TP E+
Sbjct: 176 DPKGRDEILNKIKELHKEYNM-TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
Query: 1463 N 1463
Sbjct: 235 E 235
|
Length = 287 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 48/214 (22%)
Query: 634 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT------------ 680
L I+ D+ + I G +G GK++L+ + G E P + V+ GT
Sbjct: 15 LKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDG--GTIVLNGTVLFDSRKKINLP 71
Query: 681 -----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
+ V Q +F + VR+N+ FG + E I V L LDLL + +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDEL---LDLL---GLDHL 124
Query: 735 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---- 789
R +SGG+KQRV++ARA+ + ++ + D+P SALD + Q + EL
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ-----LLPELKQIKK 179
Query: 790 --GKTRVLVTNQLHFLSQV----DRIILVHEGMV 817
+ VT H LS+ DRI+++ +G +
Sbjct: 180 NLNIPVIFVT---HDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 16/234 (6%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I F++V +Y+ + L +SF IP IVG G+GKS++ + I +++ G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPV-LFSGT-----VRFNLDPFSEHSDADLWEALERA 1352
+ I LRK +GI+ Q+P F G+ V F L+ + D ++ + A
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYD-EMHRRVSEA 126
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
LK + + + S GQ+Q ++++ L +++LDEAT+ +D
Sbjct: 127 -LKQ------VDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 1413 LIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
+ +R+ + T++ I H L+ ++ D +++++ G V + TP E+ +
Sbjct: 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-17
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
VL G+ ++ VG+VG GAGK+++L + + G +L+ G D+
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 1314 KILGIIPQSPVL---FSG--TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLG 1364
+ + +PQ L F V P F ++ D RA ++ A+ R G
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD------RAAVERAMERT--G 128
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIRE 1420
+ + S G+RQ + L+RAL + + +L+LDE TA++D VRT L++ + +
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR-RLVD 187
Query: 1421 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ K+ I H L+ CD ++LL GRV P ++L+ +
Sbjct: 188 DGKTAVAAI--HDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 6e-17
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E V + VL ++ ++ + V I+G +G GKS++L + + + G +L
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSDADLWEALE 1350
+DG + G I G + Q L TV N+ + E LE
Sbjct: 62 LDGRPVTGPG----PDI-GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
L D + S G RQ ++++RAL R K+L+LDE A+D T
Sbjct: 117 LVGLAGF-------EDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 1411 DALIQK---TIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSG 1449
+Q + EE + T+L++ H L DR+++L +
Sbjct: 166 REELQDELLRLWEETR-KTVLLVTHDVDEAVYL-----ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-16
Identities = 57/255 (22%), Positives = 114/255 (44%), Gaps = 51/255 (20%)
Query: 613 PAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-- 669
P + + N + + R + +++ ++ G ++ IVG +G GK++L A++G LP
Sbjct: 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63
Query: 670 -------------VSDASAV----IRGT-VAYVPQVSW-IFN--ATVRDNI-----LFGS 703
+ S +RG +A + Q N T+ D I L G
Sbjct: 64 RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK 123
Query: 704 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN------ISGGQKQRVSMARAVYS 757
++A++ LL + + + +SGG +QRV +A A+
Sbjct: 124 GSRAEARKRAVE---------LL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171
Query: 758 NSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHE 814
+ I D+P +ALD Q+ D + ++ EL G + +T+ L ++++ DR++++++
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADRVVVMYK 230
Query: 815 GMVKEEGTFEDLSNN 829
G + E G E++ +N
Sbjct: 231 GEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-16
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
+++ +V + + +S I + V ++G +G GK+++L + +
Sbjct: 2 PKPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 1295 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADL 1345
G IL+DG DI D+ R I G++ QS LF V F L + A++
Sbjct: 60 GEILLDGEDIT-----DVPPEKRPI-GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEI 113
Query: 1346 W----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
EALE L+ D + + S GQ+Q ++L+RAL+ K+L+LDE
Sbjct: 114 KARVEEALELVGLEGF-------ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDE 162
Query: 1402 ATAAVD--VRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-------CDRILLLDSGR 1450
+A+D +R +K ++E + T + + H D DRI +++ GR
Sbjct: 163 PLSALDAKLREQM--RKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGR 214
Query: 1451 VLEYDTPEEL 1460
+ + TPEE+
Sbjct: 215 IEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 678
L I+L + G +V I+G +G GK++L+ + +L +R
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 679 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEP-ARYEKAIDVTSLQHDLDLLPGG 729
V V Q +F + TV +NI S E R + ++ L D P
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA- 134
Query: 730 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 789
+SGGQ+QRV++ARA+ N V +FD+P SALD + +V D
Sbjct: 135 ----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184
Query: 790 GKTRVLVTNQLHFLSQV-DRIILVHEGMV 817
G T V+VT+++ F +V DR+I + +G +
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
++ AE L +I+ +I G V I+G G GK++L+ + G P S
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GK 83
Query: 675 AVIRGTVAYVPQVSWIFN--ATVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDL 725
+ G VA + ++ F+ T R+NI + ++ I+ L +D
Sbjct: 84 VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID- 142
Query: 726 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
P S G R++ + A + D+ + D+ L+ DA + +R
Sbjct: 143 QPVK----------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 786 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 825
KT VLV++ L + Q DR I + G ++ EG+ E+
Sbjct: 193 LVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-16
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+L+ LS ++P ++G G GKS++L R++ + G + + I+ L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 1314 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQV 1369
+ L ++PQ + G TVR L + LW L + A + A+ + ++
Sbjct: 76 RRLALLPQHHLTPEGITVR-ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ--TRINHLA 132
Query: 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 1428
+ S GQRQ L+ L + + +++LDE T +D+ + + +RE + T++
Sbjct: 133 DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192
Query: 1429 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ H LN CD +++L +G V+ TPEE+++
Sbjct: 193 TVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-16
Identities = 115/542 (21%), Positives = 201/542 (37%), Gaps = 72/542 (13%)
Query: 943 TDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 1002
T +SL L LL + +L + L + +L + IL P+
Sbjct: 43 TADTSL---LVLPEFLGLLLLFM---VSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPL 96
Query: 1003 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ----LLSTFVLIGIVSTMSL- 1057
R++ D+ RN++ F + ++ Q L + + +S
Sbjct: 97 ERIERLGSARLLAGLTSDV----RNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFL 151
Query: 1058 ----WAIMPLLLLFYAAYLYYQ--STAREVKRLDSITRSPVYAQFGEALNG-----LSTI 1106
W ++ + F Y+ + ARE T + + L G L+
Sbjct: 152 LTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKELTLNRE 204
Query: 1107 RAYKAYDRMADINGKSMDKNIRY-TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 1165
RA ++ + + + +I ++ A W I L + GL+ WL
Sbjct: 205 RAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA---------- 254
Query: 1166 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 1225
+AST + + L + L T +L + L A + N I AP +
Sbjct: 255 --LSLGWAST-NVAATIVLVLLFLRTPLLSAVGILPTLLTA-QVAFNKIAKLELAPYKAD 310
Query: 1226 SNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 1282
RP +P +++ +V Y+ + P+ + TI + V ++G G+GKS++
Sbjct: 311 FPRPQA-FPDWKTLELRNVRFAYQDNAFHVGPI----NLTIKRGELVFLIGGNGSGKSTL 365
Query: 1283 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 1342
L + + + G IL+DG ++ L D RK+ + LF + + +
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKASPQL 423
Query: 1343 ADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
+ W + LE AH L S GQ++ L+L ALL ILVLDE
Sbjct: 424 IEKWLQRLELAHKTSLNDGRFSNLK---------LSTGQKKRLALLLALLEERDILVLDE 474
Query: 1402 ATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1459
A D + + K T+ I+H + I DR+L + +G++ E T EE
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE-LTGEE 533
Query: 1460 LL 1461
Sbjct: 534 RD 535
|
Length = 546 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-16
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 34/254 (13%)
Query: 588 LKRMEEFLLAEEK--------ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 639
L+++E L E P P G + N +D R L +++
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFR 344
Query: 640 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQ--VSWIFNAT 694
I G +AIVG G GK++L+ + GEL P+S V G + Y Q + T
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG--TVKVGETVKIGYFDQHRDELDPDKT 402
Query: 695 VRDNI--LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752
V + + F E +V + G D + +SGG+K R+ +A
Sbjct: 403 VLEELSEGFPDGDE-------QEVRAYLGRF-GFTGEDQEKPVG---VLSGGEKARLLLA 451
Query: 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIIL 811
+ + ++ + D+P + LD + + + + G T +LV++ +FL +V RI L
Sbjct: 452 KLLLQPPNLLLLDEPTNHLDIE-SLEALEEALL-DFEG-TVLLVSHDRYFLDRVATRIWL 508
Query: 812 VHEGMVKEEGTFED 825
V + + + EG +ED
Sbjct: 509 VEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-16
Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 50/224 (22%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVI---------------- 677
+++L+IP G + I+G +G GK++L+ + E P + +V
Sbjct: 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP---TSGSVFVDGQDLTALSEAELRQ 80
Query: 678 -RGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKA---IDVTSLQHDLDLLPGG 729
R + + Q FN TV +N+ F E A KA V L L+L+
Sbjct: 81 LRQKIGMIFQH---FNLLSSRTVFENVAF--PLELAGVPKAEIKQRVAEL---LELV--- 129
Query: 730 DVTEIGERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RC 783
+ ++ +SGGQKQRV++ARA+ +N + + D+ SALD + + + +
Sbjct: 130 ---GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKD 186
Query: 784 IRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 826
I EL G T VL+T+++ + ++ DR+ ++ +G + EEGT ++
Sbjct: 187 INREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 627 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASA 675
+ + N+NL+I G + ++G +G GKT+ LI GE+ + +
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 676 V-IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPG 728
V +R + YV Q +F + TV +NI L + + + D L + L P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK--WPKEKIRERAD--ELLALVGLDPA 126
Query: 729 GDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-G 786
E +R +SGGQ+QRV +ARA+ ++ + + D+P ALD Q+ + R
Sbjct: 127 ----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182
Query: 787 ELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
+ GKT V VT+ + DRI ++ G + + GT +++ +
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 45/232 (19%)
Query: 614 AISIR--NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 671
ISIR N Y+ S + L +INL+I G +V + G +G GKT+L++ + G L V
Sbjct: 1 VISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQ 58
Query: 672 DASAVIRGT----------VAYVPQVSWIFNA-------TVRDNILFGSAFEP-----AR 709
+ S + G V + +IF A T R N+ +P
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA 118
Query: 710 YEKAIDVTS---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 766
E+A + L LD P N+SGGQKQRV++ARA+ + + D+
Sbjct: 119 RERARAMLEAVGLGDHLDYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADE 167
Query: 767 PLSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEG 815
P +ALD+ GR V + + +L+ G T ++VT+ L DRI+ + +G
Sbjct: 168 PTAALDSKSGRDVVE--LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-16
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 1271 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI----LGIIPQSPVLF 1326
I+G +G+GKS++L + R++E G++LIDG DIA +LR++ + ++ QS L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1327 SG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR-------NSLGLDAQVSEAGENFSV 1378
TV N+ F LE + A R +GL+ + + S
Sbjct: 115 PHRTVLENV-AFG----------LEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163
Query: 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TMLIIAH 1432
G +Q + L+RAL IL++DEA +A+ D LI++ +++E T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSAL----DPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 1433 RLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
L+ + DRI ++ GR+++ TPEE+L+N
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------------VSDASAVIRGTVA 682
+++ + G + ++G G GKT+L+ + L P V D S V R
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79
Query: 683 YVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 741
+ T R+N+ F +R E + L L LL D R
Sbjct: 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----RRVGEF 134
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 801
S G KQ+V++ARA+ + + + D+P S LD R+ D + + G+ + + H
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS---H 191
Query: 802 FLSQV----DRIILVHEGMVKEEGTFEDL 826
+ +V DR+I++H+G V EG+ E L
Sbjct: 192 IMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 5e-16
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 29/229 (12%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 1310
L G+S I V +G +G GKS+ L R+ +L G I IDG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1311 --DLRKILGIIPQSPVLFSGTVRFNL-----------DPFSEHSDADLWEALERAHLKDA 1357
+LRK +G++ Q P F ++ N+ + F + E L+ A L D
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR---VEETLKGAALWDE 135
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
++ ++ E+ S GQ+Q L ++RA+ +L++DE +A+D + A +++
Sbjct: 136 VKD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL 188
Query: 1418 IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 1465
I E K T++I+ H + D+ G ++EYD +++ +N
Sbjct: 189 IHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 6e-16
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 43/236 (18%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVS 671
I +R+ + K L +I+LDIP G + A++G +G GK++L+ + +P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 672 DASAV-IRGTVAYVPQVSWI---------------FNATVRDNILFG---SAFEPARYEK 712
D V + G Y V + F ++ DN+ +G +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 713 AIDVTSLQHDLDLLPGGDVTEIGER--GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
+L+ L E+ +R + +SGGQ+QR+ +ARA+ + +V + D+P SA
Sbjct: 118 ERVEEALR--KAALWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 771 LDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 821
LD + + I EL + T V+VT H + Q DR + G + E G
Sbjct: 172 LDP-ISTAKIEELIA-ELKKEYTIVIVT---HNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 6e-16
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 1239 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
++ + R+ P V +S ++ + ++G GAGKS+++ LF + + + G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1297 ILIDG--------FDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWE 1347
I +DG D + G+ G++ Q +L TV N+ E
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGI-------GMVHQHFMLVPTLTVAENIILGLE-PSKGGLI 112
Query: 1348 ALERAH--LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
+A +K+ R GL + SVG++Q + + +AL R +++L+LDE TA
Sbjct: 113 DRRQARARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 1406 V-DVRTDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEE 1459
+ D L + + + E K T++ I H+L ++ DR+ +L G+V+ D E
Sbjct: 171 LTPQEADELFEILRRLAAEGK--TIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAE 227
|
Length = 501 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 7e-16
Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 26/244 (10%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++F DV R+ VL GL+F++ +KV ++G +G+GKS++L L + ++ G+I
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1299 IDGFDI-------AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA--- 1348
++G + D + + + + ++F FNL P D ++ EA
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQS---FNLFPHKTVLD-NVTEAPVL 114
Query: 1349 ---LERAHLKD-AIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
+ RA + A+ + +GL + S GQ+Q ++++RAL R K+++ DE T
Sbjct: 115 VLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 1404 AAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459
+A+D + IR E TML++ H + + DR+ D GR++E P+E
Sbjct: 175 SALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233
Query: 1460 LLSN 1463
+
Sbjct: 234 IFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 8e-16
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPV 670
AI I N + E+ L NINLDIP + A++G +G GK++L+ ++ + +L P V
Sbjct: 1 AIEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 671 SDASAVI----------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 714
V+ R V V Q F ++ DNI +G + +K +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 715 D---VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 771
D SL+ L + + + +SGGQ+QR+ +ARA+ +V + D+P SAL
Sbjct: 118 DEIVEESLKKAA--LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 772 DAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
D ++ + EL K T V+VT+ + +++ DR ++G + E G E + N
Sbjct: 176 DPIATGKIEELIQ--ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 8e-16
Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSL--ISAML-----GEL----PPVSDASAVIRGTV 681
L +I+LDIP G +VA++G +G GKT+L I A L G + VS A R V
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR-KV 76
Query: 682 AYVPQVSWIF-NATVRDNILFGSAFEPARYE---KAID--VTSLQHDLDLLPGGDVTEIG 735
+V Q +F + TV DNI FG P R AI VT L L+++ + +
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQL---LEMV---QLAHLA 130
Query: 736 ER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG---ELSGK 791
+R +SGGQKQRV++ARA+ + + D+P ALDA V R+ R +R EL
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV-RKELRRWLRQLHEELK-F 188
Query: 792 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
T V VT +Q + DR++++ +G +++ GT + +
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 8e-16
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 24/276 (8%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI--- 1315
+SF IP + VG +G GAGKS+ L L ++ G++ ++G D + LR I
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 1316 ----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1371
L + P L S V L E D + E L+ L L+ +
Sbjct: 103 MGQKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFL-------TEILDLEGFLKW 152
Query: 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 1429
S+GQR L+ ALL K+L LDE T +DV A I++ ++E E + T+L+
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 1430 IAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1488
H + I CDR+LL+D G+++ T +L F + + S +
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ----EQFGPYKEFSVELKQAKSLSQLA 268
Query: 1489 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALA 1524
N + D R A A++ +
Sbjct: 269 LLGDVTIEEGLNIKNDVSREESADIIAKLLAEFEVR 304
|
Length = 325 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 8e-16
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 1313
V+ +S T+ + VG++G GAGK++ + IV + G I+ID DI+ L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1314 KILGIIPQSPVLFS---------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 1364
+ +G +PQ +F ++ D +E + E +E H++ R+S+
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL--RDSM- 134
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1424
G++ S G+R+ + ++RAL K ++LDE A VD + I++ I S
Sbjct: 135 --------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186
Query: 1425 -CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+LI H + + C+R ++ G ++ + TP E+L +E
Sbjct: 187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-16
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 35/220 (15%)
Query: 632 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI--- 677
L+ N +P + A+ G +G GKTSLI+ + G P + DA I
Sbjct: 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 678 --RGTVAYVPQVSWIF-NATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTE 733
+ + YV Q + +F + TVR N+ +G A++++ + + ++H LD PG
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG----- 127
Query: 734 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 793
+SGG+KQRV++ RA+ + ++ + D+PL++LD R++ R L +
Sbjct: 128 ------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER--LRDEIN 179
Query: 794 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 829
+ + H L +V DR++++ G VK G E++ +
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 21/238 (8%)
Query: 1236 SGSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
S I+ +++ +Y+ + L+ +SF + + + I+G G+GKS+ + + ++E E
Sbjct: 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61
Query: 1295 GRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEA 1348
G+I+IDG + + + D+R +G++ Q+P F G V F L E+ E
Sbjct: 62 GQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEM 117
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
ER + +A+ +G+ S GQ+Q ++++ A+ R KI++LDEAT+ +D
Sbjct: 118 KERVN--EAL--ELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1409 --RTDALIQ--KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462
R + LI+ K IR++++ T++ I H L+ + DR+L++ +G+V TP EL S
Sbjct: 174 EGRLE-LIKTIKGIRDDYQ-MTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
|
Length = 279 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 61/235 (25%), Positives = 125/235 (53%), Gaps = 25/235 (10%)
Query: 1243 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 1302
D+ Y P+ L G++F + V ++G GAGKS++ I++ G +LI G
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 1303 DIA--KFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWEALER 1351
I K L+++RK +GI+ Q+P LF+ TV NL S+ E +E+
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG-LSK-------EEVEK 116
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+K+A++ +G++ ++ + S GQ++ ++++ L + +I+VLDE T+ +D
Sbjct: 117 -RVKEALKA--VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 1412 ALIQKTIRE-EFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 1464
+ I K + + + T++I H ++ + + D++ ++ G++++ TP+E+ S+
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 30/215 (13%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 680
L ++L++P G + ++G G GKT+L+ ++G LP S + G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERAR 74
Query: 681 --VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE--IG 735
+AYVPQ IF TV +N+L G A P R + I +L P V + +G
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR-SRKIP----DEIYELFP---VLKEMLG 126
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTR 793
RG ++SGGQ+Q++++ARA+ + + + D+P + + + + R IR G
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIRRLRAEGGMAI 185
Query: 794 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 827
+LV L F ++ DR ++ G V G ++L
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLMD 1311
L+ +S +P G++G +GAGKS TL R V LER G +++DG D+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKS----TLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 1312 L---RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRRNS----- 1362
L R+ +G+I Q L S F ++ LE + KD I+R
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEIKRKVTELLA 126
Query: 1363 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1421
+GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T I + ++E
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 1422 FKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 1475
+ T+L+I H ++ + CD + ++ +G ++E T E+ S+ + + K ++ST
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-15
Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 50/242 (20%)
Query: 609 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 668
+S P + +R S+D K + N++L I G + ++G +G GKT+++ ++
Sbjct: 9 SSLSPLVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLR-LIAGFE 64
Query: 669 PVSDASAVIRG-TVAYVP----QVSWIFNA-------TVRDNILFG--------SAFEPA 708
++ G + +VP V+ +F + TV +N+ FG + P
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP- 123
Query: 709 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDP 767
R +A+ + L+ E +R +SGGQ+QRV++ARAV + V + D+
Sbjct: 124 RVMEALRMVQLE------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
Query: 768 LSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEE 820
LSALD + +Q ++ EL G T V VT +Q L+ DRI+++ +G ++++
Sbjct: 172 LSALDYKLRKQ-----MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 821 GT 822
GT
Sbjct: 227 GT 228
|
Length = 375 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV----IR 678
P L N++ + G + IVG TG GK++LI A+ L D S + +R
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 679 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 738
++ +PQ +F+ T+R N+ D D ++ + E G
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNL---------------DPFDEYSDEEIY---GALRVSEGG 123
Query: 739 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 798
+N+S GQ+Q + +ARA+ V + D+ +++D + + IR E + T + + +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNSTILTIAH 182
Query: 799 QLHFLSQVDRIILVHEGMVKEEGT 822
+L + D+I+++ G VKE
Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 2e-15
Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER----GRILIDGFDI--AKFG 1308
LHG+S + ++G +G GKS+ L L R+ + +E G I +G +I +K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHL----KD 1356
L++LRK +G++ Q P F +V N+ E D + E+L++A + KD
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
+ RN+ + FS GQ+Q + ++RAL R K+++LDE T+A+D + + I++
Sbjct: 140 NLDRNA-----------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 1417 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
T+ E T +++ H L D+ L +G ++E EE+
Sbjct: 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 668
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 669 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 714
P A +R V V Q ++ + TV++N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA----PCRVLGLS 114
Query: 715 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 774 HVGRQVFDRCIRGELSGK--TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 822
+ Q+ I EL+ T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 1250 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKF 1307
P P VL GL+F + + ++G GAGKS++L L ++ + G +LIDG D ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1308 GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL 1363
GL++ R+ +G++ Q P LF+ V + + L L A ++ +R ++
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADV------DQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 1364 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 1423
G S G+++ ++++ A+ R +L+LDE TA +D + +R
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 1424 SCTMLIIA 1431
++I+
Sbjct: 176 EGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 625 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDA 673
+ L NI+L + G +AI G +G GK+ SLIS G L VS
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 674 SA-VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
R V+Y Q +F TV DN++F R ++A + L L +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA-RFAL----PDS 125
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
+ + +SGG+KQR+++ R + + + D+ SALD R +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
|
Length = 223 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-15
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 1225 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 1284
E+ PG S+ +I V Y + V++GLSFT+ + G++G GAGKS++
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIAR 85
Query: 1285 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTVRFNLDPFSEH--- 1340
+ + + G+I + G + + +I G++PQ L TVR NL F +
Sbjct: 86 MILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 1341 ----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396
+A + LE A L+ DA+VS+ S G ++ L+L+RAL+ ++
Sbjct: 145 STREIEAVIPSLLEFARLESKA-------DARVSD----LSGGMKRRLTLARALINDPQL 193
Query: 1397 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH------RLNTIIDCDRILLLDSG 1449
L+LDE T +D LI + +R + T+L+ H RL CDR+ +L++G
Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAG 248
Query: 1450 RVLEYDTPEELL 1461
R + P L+
Sbjct: 249 RKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-15
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 64/254 (25%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I E++ L Y P+L +S T+ P +++G+VGR GAGKS++L L +E + G +
Sbjct: 4 ITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER------ 1351
LR +G + Q P L TV + +L E L
Sbjct: 62 RPK---------GLR--VGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEAYA 106
Query: 1352 ------AHLKDAIRRNSLGLDAQVSEAG-----------------ENFSVGQRQLLSLSR 1388
L + LD EA + S G R+ ++L+R
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEF---KSCTMLIIAH-R--LNTIIDC 1440
ALL +L+LDE T +D+ ++I E++ T+++++H R L+ +
Sbjct: 167 ALLEEPDLLLLDEPTNHLDL-------ESIEWLEDYLKRYPGTVIVVSHDRYFLDNV--A 217
Query: 1441 DRILLLDSGRVLEY 1454
IL LD G++ Y
Sbjct: 218 THILELDRGKLTPY 231
|
Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-15
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-R 1313
+L G+S +P + ++GR G GK+++L TL ++ ++ G I +DG DI K + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 1314 KILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDA 1367
+ +PQ +F TV NL S E E LK+ + R
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR------ 128
Query: 1368 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSC 1425
G + S GQ+Q L+++RAL+ R K+L+LDE T + I + IR
Sbjct: 129 -----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 1426 TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 1460
+L++ L+ + DR +++ GRV+ +EL
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-15
Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+F++V + P VLH + I + V I+G +G+GKS++L + ++ E+ G ++
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1299 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE------ 1350
+DG + K +R+ G++ Q +F L P ALE
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQ---------QFYLFPH--------LTALENVMFGP 102
Query: 1351 ---RAHLKDAIRRNSLGLDAQV--SEAGENF----SVGQRQLLSLSRALLRRSKILVLDE 1401
R K+ + + L A+V +E ++ S GQ+Q ++++RAL + K+++ DE
Sbjct: 103 LRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 1402 ATAAVD--VRTDAL-IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTP 1457
T+A+D +R + L + + + EE TM+I+ H + R++ +D GR+ E P
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 1458 EELLSN 1463
+ L+ N
Sbjct: 221 QVLIKN 226
|
Length = 240 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E+V R+ L +SF++ + G++G GAGK++ + + I+ + G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1357
DG + +I G +P+ L+ V L ++ EA R
Sbjct: 59 FDG---KPLDIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR------ 108
Query: 1358 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
I L L ++ E S G +Q + A++ ++L+LDE + +D L++
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 1416 KTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEY 1454
IRE ++ +I+ H++ + + CDR+LLL+ GR + Y
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA------- 682
L ++NL+I G +VAI+G +G GK++L+ ++ G + P + + G
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKE 75
Query: 683 ---YVPQVSWIF-------NATVRDNILFG------------SAFEPARYEKAIDVTSLQ 720
+ IF +V +N+L G F +A+D +L+
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD--ALE 133
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
+ +L + +R +SGGQ+QRV++ARA+ + + D+P+++LD ++V
Sbjct: 134 R-VGILD-----KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 781 DRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 827
D + G T ++ LH + DRII + G + +G +L+
Sbjct: 188 DILKDINQEDGITVIVN---LHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
|
Length = 258 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 5e-15
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 643 GSLVAIVGGTGEGKTSLISAMLGELPPV-------SDASAVIRGTVAYVPQ---VSWIFN 692
G L+ ++G G GKT+L+ A+LG +PP + + YVPQ +W F
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFP 65
Query: 693 ATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRV 749
+V ++ G R D +++ L + +TE+ +R V +SGGQ+QRV
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV---GLTELADRPVGELSGGQRQRV 122
Query: 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDR 808
+ARA+ + V + D+P + LD + + I +G ++ T+ L ++ DR
Sbjct: 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDR 182
Query: 809 IILVHEGMVKEEGTFEDLSN 828
++L++ G V +GT + L +
Sbjct: 183 VVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 5e-15
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL 1309
VL G++ IP + ++G +G+GKS++L R++EL G + +DG DI K +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 1310 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE-----------HSDADLWE----ALERAHL 1354
++LR+ + ++ Q P NL F S +L E ALE+A L
Sbjct: 78 IELRRRVQMVFQIPNPIP-----NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
D ++ + L A S GQ+Q L ++RAL + ++L+ DE TA +D A I
Sbjct: 133 WDEVK-DRLDAPAG------KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 1415 QKTIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463
+ E K T++++ H R++ D + L G+++E+ E+ +N
Sbjct: 186 ESLFLELKKDMTIVLVTHFPQQAARIS-----DYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 5e-15
Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 36/248 (14%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGL---SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
SIKFE+V Y P P GL SF + V +VG TG+GKS+++ +++
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1295 GRILIDGFDI----AKFGLMDLRKILGIIPQSP--VLFSGTVRFNLD--P----FSEHSD 1342
G I I G+ I L LRK + ++ Q P LF TV +++ P FSE
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED-- 119
Query: 1343 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDE 1401
EA E+A +++ +GL + S GQ + ++++ + +IL LDE
Sbjct: 120 ----EAKEKA--LKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 1402 ATAAVDVRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455
A +D +K + + FK T++++ H ++ + + D +L+L+ G+++++
Sbjct: 172 PAAGLDPEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHA 227
Query: 1456 TPEELLSN 1463
+P+E+ S+
Sbjct: 228 SPKEIFSD 235
|
Length = 287 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 6e-15
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 30/224 (13%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--------VELERGRILIDGFDI-- 1304
+ ++ I + I+G +G GK+++L ++ R+ VE G+I G DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYD 74
Query: 1305 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKD 1356
+ + + RK +G++ Q P F ++ N+ D + E+L++A L D
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
++ ++++ G S GQ+Q L ++RAL ++++LDE T+A+D I+K
Sbjct: 135 EVKS-------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 1417 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPE 1458
+ E ++ T++I+ H + I D I + G ++EY T E
Sbjct: 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 6e-15
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ ED+ RY+ + L GLS +IP K ++G GAGKS++L L I +RGR+
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTV--RFNLDPFSEHSDADLWEALERAHL 1354
+ G ++ +R +G++ Q P +FS TV P + D D E R
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD--EVERRV-- 119
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
++A++ ++ + + + S GQ++ ++++ L ++VLDE A +D R +
Sbjct: 120 EEALK--AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 1415 QKTIREEFKSCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ + +I+A H ++ + D++++L GRVL LL++E
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDE 228
|
Length = 274 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
L ++ +P V ++G +G+GKS++L + + + + GRI ++G D + D RK
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD-RK 73
Query: 1315 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373
I G + Q LF TVR N+ A E + K R L Q+ G
Sbjct: 74 I-GFVFQHYALFKHLTVRDNI--------AFGLEIRKHPKAKIKARVEELLELVQLEGLG 124
Query: 1374 ENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEF 1422
+ + S GQRQ ++L+RAL ++L+LDE A+ DA ++K +R +E
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL----DAKVRKELRSWLRKLHDEV 180
Query: 1423 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
T+ + + + DRI+++ +G++ + +P+E+ + + F
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 7e-15
Identities = 64/213 (30%), Positives = 115/213 (53%), Gaps = 27/213 (12%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLMD 1311
VL ++ I P + V + G +G+GK+++L + + ++ G + + G ++ ++ L+
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1312 LRKILGIIPQSPVLF-SGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLG 1364
LR+ +G I Q+ L T R N L P + +A RA L+ ++G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA---RERARAMLE------AVG 130
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIRE 1420
L + N S GQ+Q ++++RAL+ R K+++ DE TAA+D ++ L+QK RE
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 1421 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1452
+ CT+LI+ H N I+D DRI+ ++ G++L
Sbjct: 191 --QGCTILIVTHD-NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 8e-15
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 613 PAISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 671
+S+RN + LN ++L+I G + IVG +G GK++L + G P S
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 672 -------------DASAVIRGTVAYVPQVSW-IFNA--TVRDNILFGSAFEPARYEKAID 715
+ V V Q + N TV + EP R
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-----SEPLRPHGLSK 116
Query: 716 VTSLQHDLDLLPGGDVTEIGE-----RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
S Q +LL D + R +SGGQ+QR+++ARA+ + I D+P SA
Sbjct: 117 --SQQRIAELL---DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 771 LDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 827
LD V Q+ + ++ E G T + +++ L + + DRI ++ G + E G E+L
Sbjct: 172 LDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
Query: 828 NNG 830
++
Sbjct: 231 SHP 233
|
Length = 252 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 8e-15
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK-FGLMDLRK 1314
FT+P I GR+G+GK++++ + + + G I+++G FD K L ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1315 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373
+G + Q LF +VR NL + + ER + + LG+ +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPS-----ERRISFERVIE-LLGIGHLLGRLP 129
Query: 1374 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLII 1430
S G++Q +++ RALL ++L++DE AA+D R ++ + + EF +L +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYV 188
Query: 1431 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
+H L ++ DR+++L+ GRV E+ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 8e-15
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+ GLSFT+ + + + G G GK+++L L ++ + G + +G +A+ R
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 1314 KILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1370
IL + + + NL + + +AL L + L
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL----- 128
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1420
S GQ++ L+L+R L R+ + +LDE T A+D AL+ +R
Sbjct: 129 ------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 8e-15
Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE- 1293
+ G I+ + + + Y VL LS I + + ++G++G GK+++L + V+
Sbjct: 2 ACGGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 1294 -RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWE 1347
GRI I D+ ++ L ++ Q+ LF V F L + AD+ E
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRA-QKMPKADIAE 116
Query: 1348 ----ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
AL+ L DA L AQ+S G +Q ++++RA+ +L+LDE
Sbjct: 117 RVADALKLVGLGDAAAH----LPAQLSG-------GMQQRIAIARAIAIEPDVLLLDEPL 165
Query: 1404 AAVDVRTDALIQ---KTIREEFKSCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEE 1459
+A+D A ++ + EE T+L + H + + + D+ ++ GR+ + P+
Sbjct: 166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225
Query: 1460 LLSNEGSSFSKMVQSTGAAN 1479
L F+ + GAAN
Sbjct: 226 LYDAPADGFA--AEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 9e-15
Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 43/234 (18%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 1311
+ G+S T+ +G+VG +G+GKS++ L R++ +G I DG DI +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 1312 LRKILGIIPQSPVLFSGTVRFNLDP--------------FSEHSDADLWEALERAHLKDA 1357
LR+ + ++ Q P + +L P A E +R +A
Sbjct: 361 LRRRMQVVFQDP--YG-----SLSPRMTVGQIIEEGLRVHEPKLSAA--ERDQRV--IEA 409
Query: 1358 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
+ +GLD A + FS GQRQ ++++RAL+ + ++++LDE T+A+D +Q
Sbjct: 410 LE--EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQA 463
Query: 1417 TIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+ + + + L I+H L + C R++++ G+++E E + +N
Sbjct: 464 QVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 9e-15
Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 1239 IKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
++ E++V +Y E L+G+SF+I + V I+G+ G+GKS+ + + E G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1298 LIDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1355
IDG + + +LR+ +G++ Q+P TV ++ E+ E ++R +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--VD 122
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
+A+ ++ LD + E S GQ+Q ++++ + R +I++LDE+T+ +D I
Sbjct: 123 EALLAVNM-LDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 1416 KTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462
+ I E E T+L I H L+ DRIL++ +G +++ P EL +
Sbjct: 181 RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 1e-14
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 44/223 (19%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----- 674
K +P + +++L++ G + ++G G GKT+ + + GEL P ++ S
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 675 AVIRGTVAYVPQVSWIFNA-----TVRDNILFGSAF-------EPARYEKAIDVTSLQHD 722
R ++ Y PQ F+A TVR+++ F + E + V L
Sbjct: 71 KAARQSLGYCPQ----FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 723 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
+ +SGG K+++S+A A+ V + D+P S LD R ++D
Sbjct: 127 ANKRAR-----------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD- 174
Query: 783 CIRGELSGKTRVLVTNQLH---FLSQVDRIILVHEGMVKEEGT 822
I G++ +L T+ + L DRI ++ +G ++ G+
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALC--DRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 37/236 (15%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ ++V +R + +L LS+ + P + IVG GAGK+++L+ L G +
Sbjct: 32 IELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 1299 IDGFDIAKFGLM-DLRKILGIIPQSPVL-----------------FSGTVRFNLDPFSEH 1340
+ G K + +LRK +G++ S L F ++ + +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA- 146
Query: 1341 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400
E L A LG + S G+++ + ++RAL++ ++L+LD
Sbjct: 147 ------EDLAAAQWLL----ELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 1401 EATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVL 1452
E +D+ + + E + +L + H I C LLL G V+
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 1307
+L ++ I + +G +G GKS+ L R+ + +G + IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFN----------------LDPFSEHS--DADLWEAL 1349
++ LR +G++ Q P F ++ N LD E S LWE
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-- 137
Query: 1350 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1409
L D ++ ++ S GQ+Q L ++RA+ + +L++DE +A+D
Sbjct: 138 ---ELGDRLKDSAF-----------ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
Query: 1410 TDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
+I+ I+E K+ T++++ H + DR+ SGR++EY+T +E+ N SS
Sbjct: 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSK 243
Query: 1469 SK 1470
+K
Sbjct: 244 TK 245
|
Length = 251 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-14
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 42/231 (18%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315
++ S + + I+G +G+GKS+++ L R++E RG IL+DG DIAK +LR++
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1316 -----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 1364
++P VL V F L E E ERA +A+ +G
Sbjct: 104 RRKKISMVFQSFALLPHRTVL--ENVAFGL----EVQGVPKAEREERAL--EALEL--VG 153
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD---------AL 1413
L+ + S G +Q + L+RAL IL++DEA +A+D +RT+ A
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
++KTI + I H L+ + DRI ++ G +++ TPEE+L N
Sbjct: 214 LKKTI---------VFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPPVS 671
I + N FS+ + +E L N++ +I G VAI+G G GK S IS +L G L P S
Sbjct: 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGK-STISKILTGLLKPQS 63
Query: 672 -----DASAVIRGTVAYV-PQVSWIFN--------ATVRDNILFG---SAFEPARYEKAI 714
D + + + + ++ IF ATV D+I FG P + + I
Sbjct: 64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
D + + ++ + + N+SGGQKQRV++A + N ++ IFD+ S LD
Sbjct: 124 DDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 775 VGRQVFDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 831
R++ I +L KT + +T+ + D++I+ EG + +G +++ NN E
Sbjct: 177 GKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
Query: 832 LFQK 835
+ +K
Sbjct: 235 ILEK 238
|
Length = 271 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 2e-14
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 32/219 (14%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-------------------ELPPV 670
L +++L+I G L+A++G +G GKT+L+ A+ G PP
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 671 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 730
A++ A P + V DN+ FG + KA + L L+ GD
Sbjct: 78 KRGLALLFQNYALFPHL------KVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGD 129
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GEL 788
+SGG +QR+++ARA+ DV + D+PLSALDA++ + + EL
Sbjct: 130 AAA--HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 789 SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
T + VT +Q L+ D+ ++ +G + G + L
Sbjct: 188 PELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 15/205 (7%)
Query: 1248 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 1307
Y +L+ +SF++ + I G +G GKS++L + ++ G +L +G DI+
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
R+ + Q+P LF TV NL P+ + + A D + R L
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-----DPAIFLDDLER--FALP 127
Query: 1367 AQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREE 1421
+ S G++Q +SL R L K+L+LDE T+A+D + +I + +RE
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE- 186
Query: 1422 FKSCTMLIIAHRLNTIIDCDRILLL 1446
++ +L + H + I D+++ L
Sbjct: 187 -QNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
+L L+ TI I+G +G+GKS++LN + + + + G++ ++G + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1315 I----LGIIPQSPVLF-SGTVRFNLD---PFSEHSDAD----LWEALERAHLKDAIRRNS 1362
LG + Q+ L + TV NLD + + S + EALE+ L +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1422
L L ++ E S G++Q ++L+RA+L+ +++ DE T ++D + + + E
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 1423 KSCTMLIIA-HRLNTIIDCDRILLL 1446
+II H DR++ L
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 55/215 (25%), Positives = 110/215 (51%), Gaps = 9/215 (4%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
L+ ++F P + ++ ++G GAGKS++ I++ G +LI G I K + ++RK
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 1315 ILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1372
+G++ Q+P +FS TV ++ F + L E + A+ LGL+
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDI-AFGP-INLGLDEETVAHRVSSALH--MLGLEELRDRV 134
Query: 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII-- 1430
+ S G+++ ++++ + ++LVLDE TA +D + + + + ++ M +I
Sbjct: 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS 194
Query: 1431 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
H+L+ + + D I ++D GR++ Y T EE+
Sbjct: 195 THQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 2e-14
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 794
G+ V++SGGQ+QRVS+ARA+ +V +FD+P SALD + +V + GKT V
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 795 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+VT+++ F V +I +H+G ++EEG E L N
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ E++ L P+ +L LSF I P D++ I G +G GKSS+ L + GRI
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358
G+ + +L +PQ P L GT L++ +
Sbjct: 59 ---------GMPEGEDLL-FLPQRPYLPLGT------------------------LREQL 84
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
+ S G++Q L+ +R LL + K + LDEAT+A+D ++ + + +
Sbjct: 85 IYPW----------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134
Query: 1419 REEFKSCTMLIIAHR 1433
+E T++ + HR
Sbjct: 135 KELG--ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 632 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP----------------PVSDA 673
T+L+ I+L++ G +VAI+G +G GKT+L+ + L E P +S
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 674 SAVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP-- 727
+IR +V V FN TV +NI+ G P + + +LL
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG----PVIVKGEPKEEATARARELLAKV 132
Query: 728 --GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
G T R +SGGQ+QRV++ARA+ +V +FD+P SALD + +V + IR
Sbjct: 133 GLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIR 188
Query: 786 GELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
K T V+VT+++ F V DR I + +G + E+G
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 52/255 (20%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
I + + F + A L +++ + G VAIVG G GK++L + G L P
Sbjct: 4 EIIRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--- 59
Query: 673 ASAVIRGTVAYVP-----------QVSWIFN--------ATVRDNILFGSAFE----P-- 707
+ I TV + QV +F ATV+D++ FG E P
Sbjct: 60 EAGTI--TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG--LENIGVPRE 115
Query: 708 ---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 764
R ++A+ ++ L+ P +SGGQKQRV++A + D+ I
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIIL 164
Query: 765 DDPLSALDAHVGRQ-VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821
D+ S LD GR+ V + R ++ + G T + +T+ L +Q DR+I++++G + EEG
Sbjct: 165 DEATSMLDP-RGRREVLETVRQLKEQ-KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
Query: 822 TFEDLSNNGELFQKL 836
T E++ +G + Q++
Sbjct: 223 TPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 42/252 (16%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER-- 1294
SI+ +V R+ L +S IP + V ++G +G+GK+ TL R++ LER
Sbjct: 2 SIEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKT----TLLRLIAGLERPD 55
Query: 1295 -GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLW 1346
G IL G D + + R + G + Q LF TV N+ P SE
Sbjct: 56 SGTILFGGEDATDVPVQE-RNV-GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA-- 111
Query: 1347 EALERAH-LKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
E + H L ++ + L AQ+S GQRQ ++L+RAL K+L+LDE
Sbjct: 112 EIRAKVHELLKLVQLDWLADRYPAQLSG-------GQRQRVALARALAVEPKVLLLDEPF 164
Query: 1404 AAVDVRTDALIQKTIREEFK------SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456
A+ DA ++K +R + T + + H ++ DR+++++ GR+ + T
Sbjct: 165 GAL----DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
Query: 1457 PEELLSNEGSSF 1468
P+E+ + S F
Sbjct: 221 PDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 1243 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 1301
+ + LP + F + + GI G +GAGKS++L + + + + G I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 1302 --FDIAKFGLMDL----RKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEA-L 1349
FD K ++L RKI G++ Q LF VR F L D + L
Sbjct: 60 VLFDSRK--KINLPPQQRKI-GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELL 116
Query: 1350 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1409
+ L + R L S G++Q ++L+RAL + ++L+LDE +A+D
Sbjct: 117 DLLGLDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 1410 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455
+ +++ K+ ++ + H L+ DRI++++ GR+
Sbjct: 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 46/245 (18%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAKFG-- 1308
L G+S IP ++G +G GKS+ L L R+ + + G + +DG DI + G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSD------------------ADLWE- 1347
L++LRK +G++ QSP F ++R N+ P +H D +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 1348 ALERAHL----KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
+L +A L D + N+LGL S GQ+Q L ++R L +++++DE
Sbjct: 180 SLRQAALWDEVNDRLDDNALGL-----------SGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1404 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELL 1461
+A+D + I+ I E + T++++ H + I + L G ++EYD +++
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 1462 SNEGS 1466
N S
Sbjct: 289 ENPES 293
|
Length = 305 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-14
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 44/250 (17%)
Query: 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
S I F +V RY +L V+ GLSF + + G++G GAGK++ L L + +
Sbjct: 4 SVAPIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 1295 GRILIDGFDI---AKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPFSEH---SDADL 1345
G I + G + A+ R+ +G++PQ L F TVR NL F + S A
Sbjct: 62 GSISLCGEPVPSRARHA----RQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAA 115
Query: 1346 WEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
LE A L++ DA+V E S G ++ L+L+RAL+ +LVLDE
Sbjct: 116 RALVPPLLEFAKLENKA-------DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDE 164
Query: 1402 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAH------RLNTIIDCDRILLLDSGRVLEY 1454
T +D + L+ + +R T+L+ H RL CDR+ +++ GR +
Sbjct: 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAE 219
Query: 1455 DTPEELLSNE 1464
P L+ +E
Sbjct: 220 GAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
++ G+ T PP G++G G+GKS++L L + + G + + G D+
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 1314 KILGIIPQS-----PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLD 1366
+ + ++ Q P+ V P LW A + H + R L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRS-----LW-AGDSPHDAAVVDRALARTELS 128
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1426
S G+RQ + ++RAL + K+L+LDE T +DVR +RE +
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 1427 MLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
++ A H LN CD +++LD GRV+ P E+L+
Sbjct: 189 TVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-14
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VELERGRILIDGFDIAKFG 1308
+ G+SF I + + +VG +G+GKS ++ + G IL DG D+
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 1309 LMDLRKI----LGIIPQSPVLFSGTVRFNLDP-----------FSEH---SDADLW---- 1346
LR + +G+I Q P+ +L+P H S A
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARAL 136
Query: 1347 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 1406
E LE + + +R LDA E S GQRQ + ++ AL +L+ DE T A+
Sbjct: 137 ELLELVGIPEPEKR----LDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 1407 DVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
DV A I ++E E +L I H L + DR+ ++ G ++E T E L +
Sbjct: 189 DVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
Query: 1463 N 1463
Sbjct: 248 A 248
|
Length = 534 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I E+V Y + VL +S IP I+G GAGKS++L+ + R+++ + G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR----FNLDPFS---------EHSDAD 1344
IDG ++ +L K L I+ Q + S TVR F P+S +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN-- 117
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
EA+E HL+D R LD S GQRQ ++ L + + ++LDE
Sbjct: 118 --EAIEYLHLEDLSDRY---LD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 1405 AVDVRTDALIQKTIR---EEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEEL 1460
+D++ I K +R +E T++++ H +N D I+ L +G+V++ +P+E+
Sbjct: 165 NLDMKHSVQIMKILRRLADELGK-TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
Query: 1461 LSNE 1464
+ E
Sbjct: 224 IQPE 227
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-14
Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 33/218 (15%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRGTV 681
L +I+L + G V ++G +G GKT+L+ + G E ++ R
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD-Y 78
Query: 682 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTEIGERG 738
V Q +F N TV DNI +G + +A + LDL LPG + G+
Sbjct: 79 GIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-- 134
Query: 739 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 792
+SGGQ+QRV++ARA+ ++ + + D+PLSALDA +V + +R E+ G T
Sbjct: 135 --LSGGQQQRVALARALATSPGLLLLDEPLSALDA----RVREH-LRTEIRQLQRRLGVT 187
Query: 793 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
++VT +Q LS DRI++++ G++++ GT +++ +
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 5e-14
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 676
ER L ++N+ IP GS VAI+G TG GK++L+ + G L P S +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 677 ----IRGTVAYVPQV--SWIFNATVRDNILFG---------SAFEPARYEKAIDVTSLQH 721
+R V V Q +F TV +I FG A + AR + I++ L
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR--EMIELVGLPE 136
Query: 722 D-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--- 777
+ L P +SGGQ +RV++A + +V + D+P + LD GR
Sbjct: 137 ELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEM 184
Query: 778 -QVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 831
++F + + + G T VLVT+ + ++ D+I+++H+G V +GT ++ + +
Sbjct: 185 MEMFYKLHKEK--GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
Length = 290 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 6e-14
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 55/236 (23%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAV-------------- 676
++ ++ G ++ IVG +G GK+ L A++G LP + +
Sbjct: 23 GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKEL 82
Query: 677 --IRGT-VAYVPQ-----------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSL--- 719
IRG +A + Q + +R + + E+AI++ L
Sbjct: 83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR--LHGKGLSKKEAKERAIELLELVGI 140
Query: 720 ---QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
+ L P +SGG +QRV +A A+ N + I D+P +ALD V
Sbjct: 141 PDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 777 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
Q+ D + ++ E G +L+T+ L ++++ DR+ +++ G + EEG E++ N
Sbjct: 190 AQILDLLKELQREK-GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 6e-14
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 53/212 (25%)
Query: 623 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 676
S SK+ + L N++ G L AI+G +G GK++L++A+ G + + V
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 677 -----IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 730
R + YVPQ + TVR+ ++F +
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------- 109
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS 789
RG +SGG+++RVS+A + SN + D+P S LD+ QV +R +
Sbjct: 110 ------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADT 160
Query: 790 GKTRVLVTNQLHFLSQV----DRIILVHEGMV 817
G+T + +Q S++ D+++L+ +G V
Sbjct: 161 GRTIICSIHQP--SSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 8e-14
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 37/235 (15%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LE---RGRILIDG---FDIAK 1306
L +S I + V ++G +GAGKS TL RI+ LE GRI ++G FD++
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKS----TLLRIIAGLETPDAGRIRLNGRVLFDVSN 71
Query: 1307 FGLMDLRKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEALERAHLKDAIRRN 1361
+ D RK+ G + Q LF TV F L E EA RA +++ +R
Sbjct: 72 LAVRD-RKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPS----EAEIRARVEELLRL- 124
Query: 1362 SLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK- 1416
Q+ + + S GQRQ ++L+RAL K+L+LDE A+D + +++
Sbjct: 125 -----VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179
Query: 1417 --TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
+ + T + + H ++ DR+++L+ GR+ + P+E+ + S F
Sbjct: 180 LRKLHDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 9e-14
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 1233 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 1291
+P + VL R + +SFT+ + +GI G GAG++ + LF
Sbjct: 251 FPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310
Query: 1292 LERGRILIDGFDIA--------KFGLM---DLRKILGIIPQSPVLFSGTVRFNLDPFSEH 1340
G IL+DG + K G+ + RK G++ + + T+ +L FS
Sbjct: 311 ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRR 369
Query: 1341 SDADLWEALERAHLKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397
+ ERA + IRR + + + S G +Q + L+R L K+L
Sbjct: 370 GL--IDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVL 423
Query: 1398 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR-VLEY 1454
+LDE T +DV A I + IRE +L+I+ L ++ DRIL++ GR V E
Sbjct: 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483
Query: 1455 DTPE 1458
D E
Sbjct: 484 DREE 487
|
Length = 500 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 9e-14
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAV--I 677
P L NINL I G + I+G G GK++L + G L P D S + I
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75
Query: 678 RGTVAYV---PQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDV 731
R V V P+ ++ TV +++ FG P K +D +
Sbjct: 76 RKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRA-------------L 121
Query: 732 TEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
EIG +SGGQ Q V++A + + IFD+ S LD G V +R +
Sbjct: 122 AEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181
Query: 786 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
GKT V +T+ L L DRII++ G + EG E++
Sbjct: 182 LHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 9e-14
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+ + V Y LP + + V I+G +GAGKS++LN + +E G I
Sbjct: 1 LALDKVRYEYE-HLP---MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1357
++ GL ++ + ++ Q LF+ TVR N+ H L A ++ + DA
Sbjct: 57 VNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDA 112
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDAL 1413
+ +G+ + E S GQRQ ++L+R L+R + IL+LDE +A+D AL
Sbjct: 113 AQ--QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 1451
+++ E + T+L++ H L+ +I ++ G++
Sbjct: 171 VKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 9e-14
Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 26/244 (10%)
Query: 1239 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
IK +V RY R + V +S + + GIVG +GAGK+++ + ++E
Sbjct: 280 IKVRNVSKRYISVDRGVVKAV-DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 1295 G----RILIDGFDIAKFGLMD---LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 1347
G R+ + D+ K G ++ +GI+ Q L+ R LD +E +L +
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPD 396
Query: 1348 ALERAHLKDAIRRNSLGLDAQVSEA-----GENFSVGQRQLLSLSRALLRRSKILVLDEA 1402
E A +K I +G D + +E + S G+R ++L++ L++ +I++LDE
Sbjct: 397 --ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454
Query: 1403 TAAVDVRTDALIQKTI---REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1458
T +D T + +I REE + T +I++H ++ ++D CDR L+ G++++ PE
Sbjct: 455 TGTMDPITKVDVTHSILKAREEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 1459 ELLS 1462
E++
Sbjct: 514 EIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------ELPPVSDASAVI---RGTV 681
L NI+ I G V ++G TG GK++L+SA L ++ VS S + R
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79
Query: 682 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 741
+PQ +IF+ T R N+ + K + L+ ++ PG + + G +
Sbjct: 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL 139
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 801
S G KQ + +AR+V S + + + D+P + LD + QV + ++ + T +L +++
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-ITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 802 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS 861
+ + R +++ E V++ + + L N F++ + + +++ + +
Sbjct: 199 AMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLFPRRNSSKSK---RKP 255
Query: 862 KPAANGVDNDLPKEASDTR 880
+P + + +E DTR
Sbjct: 256 RPQIQALQEETEEEVQDTR 274
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 46/309 (14%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASAV 676
+ + ++NL I G + ++G +G GKT+ LI GE+ +SD V
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 677 -IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPGG 729
+R + YV Q +F + TV +NI L G ++ R +K D +L L G
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG--WDKERIKKRAD------ELLDLVGL 123
Query: 730 DVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR---QVFDRCIR 785
D +E +R + +SGGQ+QRV +ARA+ ++ + + D+P ALD + R Q + ++
Sbjct: 124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQ 182
Query: 786 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGK 842
EL GKT V VT+ + L DRI ++ G + + T +++ N + + G+
Sbjct: 183 KEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFF---GE 238
Query: 843 MEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRK----TKEGKSVL--IKQEERE 896
E + D A+G L + D G+SVL + ++ R
Sbjct: 239 SERGLRLLSLVSVADAVRRGEPADG--EPLLEGFVDRDALSDFLARGRSVLPVVDEDGRP 296
Query: 897 TGVVSFKVL 905
G V+ L
Sbjct: 297 LGTVTRADL 305
|
Length = 309 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 620 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 679
Y S+ + L +I++ G++ IVG +G GK++LI ++ L ++ S +I G
Sbjct: 10 SYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDG 64
Query: 680 T-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 726
+ V Q +F TV+DNI +G + EK +DV ++ L ++
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---KGEKNVDV---EYYLSIV 118
Query: 727 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
G E R V N+SGG+ QRVS+AR + +N +V + D+P SALD ++ + I
Sbjct: 119 --GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIV 175
Query: 786 GELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG-TFEDLSNNGELFQKLMENA 840
+L K + V H + Q RI +++G++ E T++ +N KL
Sbjct: 176 -KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ- 233
Query: 841 GKMEEYVE 848
GK++E V+
Sbjct: 234 GKLKEEVK 241
|
Length = 241 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 684
R L +++ IP G V + G +G GK++L+ + GE P + + R +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 685 P----QVSWIF-------NATVRDNILFG---SAFEPARYEK----AIDVTSLQHDLDLL 726
P Q+ +F + TV +N+ P + +D+ L+H L
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL 134
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 786
P +SGG++QRV++ARA+ + V + D+P LD + ++
Sbjct: 135 P-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 787 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGMV 817
G T ++ T+ L ++++ R++ + +G +
Sbjct: 184 NRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-13
Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 29/309 (9%)
Query: 527 SFILNSIPVLVTV-VSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 585
+ ++I +L + + F + LG T A L L LR PL ++ ++ A
Sbjct: 235 AVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLL-FLRTPLLSAVGILPTLLTAQ 293
Query: 586 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 645
V+ ++ + LA K P P + +RN F++ A + INL I G L
Sbjct: 294 VAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAF--HVGPINLTIKRGEL 351
Query: 646 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAV-------IRGTVAYVPQVSWIFNA 693
V ++GG G GK++L + G P S D V R + V +F
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF-- 409
Query: 694 TVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752
D +L P EK + L H L G + +S GQK+R+++
Sbjct: 410 ---DQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN------LKLSTGQKKRLALL 460
Query: 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTNQLHFLSQVDRIIL 811
A+ D+ + D+ + D R+ + + + GKT +++ H+ DR++
Sbjct: 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520
Query: 812 VHEGMVKEE 820
+ G + E
Sbjct: 521 MRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+F +V Y P LH +S I + + + G +GAGK+++L L+ + RG++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1299 IDGFDIAKF---GLMDLRKILGIIPQ-----------SPVLFSGTVRFNLDPFSEHSDAD 1344
I G D+ + L LR+ +G++ Q V VR + +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
+ H DA E S G++Q ++++RA++ +L+ DE T
Sbjct: 121 ALRQVGLEHKADAF--------------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 1405 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLDSGR 1450
+D I ++ K T +I+A +++D R+++LD GR
Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-13
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 41/234 (17%)
Query: 608 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 667
+T+ L IR Y S + + E L I+LDI G +VAIVG +G GK++L++ +LG L
Sbjct: 1 MTALLELKDIRRSYPSGEEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCL 57
Query: 668 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-------FGSAFE-------------- 706
+ + + G AT+ + L FG F+
Sbjct: 58 DKPTSGTYRVAGQDV----------ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV 107
Query: 707 --PARYEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFI 763
PA Y L +LL + + + + +SGGQ+QRVS+ARA+ + V +
Sbjct: 108 EVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL 167
Query: 764 FDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQVDRIILVHEG 815
D+P ALD+H G +V I +L G T ++VT+ +Q +R+I + +G
Sbjct: 168 ADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219
|
Length = 648 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 1239 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLFRIVE 1291
IK ++V +Y L ++ + + + I+GR G+GKS++ +N L E
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1292 LERGRILIDGFDIAKFG-LMDLRKILGIIPQSP------VLFSGTVRF---NLDPFSEHS 1341
G++ +DG D + L D+R G++ Q+P + V F NL E
Sbjct: 65 ---GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI 121
Query: 1342 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
+ E+L++ + + RR++ L S GQ+Q ++++ L R + ++ DE
Sbjct: 122 RERVDESLKKVGMYE-YRRHAPHL----------LSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 1402 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1459
TA +D + TI+E K T+++I H + ++ DRI+++DSG+V+ TP+E
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 1460 LLSN 1463
+
Sbjct: 231 IFKE 234
|
Length = 280 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
I DV + +R L SFT+P +VG G+GKS++ L V L
Sbjct: 3 QQAGIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 1295 GRILIDGFDIAKFGLMDLRK-ILGIIPQS-------PVLFSGTV---RFN----LDPFSE 1339
G+I I G + L+K ++ +PQS PVL V R+ L +
Sbjct: 62 GKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK 117
Query: 1340 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1399
+ AL R + + R Q+ E S GQ++ + L+RA+ ++ ++++L
Sbjct: 118 RDRQIVTAALARVDMVEFRHR-------QIGE----LSGGQKKRVFLARAIAQQGQVILL 166
Query: 1400 DEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1452
DE VDV+T+A I +RE + TML+ H L ++ + CD +++ G VL
Sbjct: 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220
|
Length = 272 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELERGRILIDGFDIAKFGLMD 1311
L ++ I + ++G +G GKS+ L R I +++ G + I+G D+ ++
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKID-GLVEIEGKDVKNQDVVA 76
Query: 1312 LRKILGIIPQSPVLFSGTVRFNLD---------PFSEHSDADLWEALERAHL----KDAI 1358
LRK +G++ Q P +F ++ N+ + +A + + L++ L KD +
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
++N+L L S GQ+Q L ++RAL + K+L+LDE T+A+D + +I++ +
Sbjct: 137 KQNALAL-----------SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 1419 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+E + +M+++ H + D G ++E+ +E N
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 739 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLV 796
++SGGQ+QRV++ARA+ +V +FD+P SALD + +V + +L+ G+T V+V
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVV 208
Query: 797 TNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
T+++ F V +I +H+G ++EEG E + N
Sbjct: 209 THEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDIAK--FG 1308
+ G+ + ++G +G+GKS+ L +L R+ +++ R G+IL G DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1351
+ ++RK +G++ Q P F+ ++ N LD E S A LW+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+KD + +++L L S GQ+Q L ++RA+ + IL++DE +A+D +
Sbjct: 152 -QVKDDLHKSALTL-----------SGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
+++T+ E K+ T++I+ H + D G ++EYD + +N
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 23/211 (10%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVP----QVSW 689
++LDI G ++G +G GKT+L+ ++ + ++ G + +P V+
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLR-LIAGFETPTSGEILLDGKDITNLPPHKRPVNT 76
Query: 690 IF-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-I 741
+F + TV +NI FG + KA + LDL+ + R + +
Sbjct: 77 VFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKERVAEALDLV---QLEGYANRKPSQL 131
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--QVFDRCIRGELSGKTRVLVT-N 798
SGGQ+QRV++ARA+ + V + D+PL ALD + + Q+ + ++ EL G T V VT +
Sbjct: 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHD 190
Query: 799 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
Q L+ DRI ++++G +++ GT E++
Sbjct: 191 QEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 12/218 (5%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
+LH LS T P G++G G+GKS++L L R G IL+D + + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1315 ILGIIPQS-PVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1371
+ +PQ P TVR + + H + A +R +++AI + +GL
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI--SLVGLKPLAHR 143
Query: 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREEFKSCTM 1427
++ S G+RQ ++ + + S+ L+LDE T+A+D V AL+ + +E + T+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTV 201
Query: 1428 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ + H +N CD ++ L G ++ TP EL+ E
Sbjct: 202 IAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 26/244 (10%)
Query: 1239 IKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 1291
++ DV YR PVL +S +I + VG++GR+G GKS++ L + +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 1292 LERGRILIDGFDIAKF---GLMDLRKILGIIPQ---SPVLFSGTVRFNL-DPFSEHSDAD 1344
+G + G D+ + R+ + ++ Q S V TVR + +P + D
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 1345 LWEALER-AHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEA 1402
E R A L D + GL ++ ++ S GQ Q ++++RAL + K++VLDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 1403 TAAVDVRTDALI---QKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1458
+ +D+ A+I + +++ F L I H L + C R+ ++D G+++E
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
Query: 1459 ELLS 1462
+LLS
Sbjct: 237 QLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 35/211 (16%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 684
L +++L I G + + G +G GKT+L+ + G L P V R +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74
Query: 685 P----QVSWIF-------NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLL 726
P ++ +F + TV +N+ R A+ L+H D
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF 134
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 786
P +SGG++QRV++ARA+ ++ + + D+P LD + ++ D R
Sbjct: 135 PE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 787 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGM 816
G T ++ T+ L + +V R+I++ +G
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-13
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 1271 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF---- 1326
++G +G GK+++L L + + G I++DG D+ LR I ++ QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHI-NMVFQSYALFPHMT 58
Query: 1327 -SGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381
V F L P +E + EAL L++ R L S GQ+
Sbjct: 59 VEENVAFGLKMRKVPRAE-IKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQ 106
Query: 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTII 1438
Q ++L+RAL+ + KIL+LDE +A+D + +Q KTI+E+ + + + +
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT 166
Query: 1439 DCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469
DRI ++ G++ + TPEE+ + F
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 4e-13
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 16/220 (7%)
Query: 1235 SSGSIKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 1292
S S K + EL P +L +S ++P ++G TG+GKS++L +L E+
Sbjct: 653 SERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712
Query: 1293 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 1352
GR+ + + + +PQ + + TVR N+ F E A L +A+ +
Sbjct: 713 SEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
L+ + + GL+ ++ E G N S GQ+ +SL+RA+ + +LD+ +A+D
Sbjct: 760 QLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819
Query: 1413 LI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1451
+ ++ T ++ H+++ + D ++ L GRV
Sbjct: 820 RVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----------PPVSDAS 674
S A R L ++LD+ G ++AI+G G GK++L+ A+ GEL P++
Sbjct: 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP 69
Query: 675 AVIRGTV-AYVPQVSWI-FNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLP 727
A +PQ S + F TV++ + G S EP E+ DL L
Sbjct: 70 PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 728 GGDVTEIGERGVNISGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFD 781
G D +SGG++QRV +AR + D+P SALD
Sbjct: 130 GRDYRT-------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL- 181
Query: 782 RCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 825
R R VL LH L+ DRI+L+H+G V G+ +D
Sbjct: 182 RLARQLAREGGAVLAV--LHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-13
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 24/220 (10%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 674
+ L ++L + GSLV +VG G GKT+L+ A+ G L P V S
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 675 AVIRG-TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKA--IDVTSLQHDLDLLPGGD 730
A VA VPQ S F VR + G +R++ D +++ ++
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTG 128
Query: 731 VTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL- 788
V + +R V ++SGG++QRV +ARA+ + V + D+P ++LD + QV + L
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN--HQVRTLELVRRLV 186
Query: 789 -SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826
GKT V + L ++ D ++L+ +G V+ G D+
Sbjct: 187 DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-13
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 73/303 (24%)
Query: 615 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
I ++N ++ K E L N++++I G +AI+G TG GKT+ I + L P D
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--D 60
Query: 673 ASAV--------------------------------------IRGTVAYVPQVS--WIFN 692
+ IR V V Q + +F
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120
Query: 693 ATVRDNILFGS---------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 743
T+ +I+FG A + A K I++ L D L +SG
Sbjct: 121 QTIEKDIIFGPVSMGVSKEEAKKRAA--KYIELVGL--DESYLQ--------RSPFELSG 168
Query: 744 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQL- 800
GQK+RV++A + D +FD+P + LD +++ + I L GKT +LVT+ L
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE--IFDNLNKQGKTIILVTHDLD 226
Query: 801 HFLSQVDRIILVHEG-MVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDN 858
+ L R I +G ++K+ T++ LS+N L + ME K+ +V + ++ G V
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP-KLLNFVNKLEKKGIDVPK 285
Query: 859 KTS 861
TS
Sbjct: 286 VTS 288
|
Length = 305 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-13
Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
SI+ + Y + L +SF VG +G GAGKS+ + + + + G +
Sbjct: 2 SIRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 1298 LIDGFDIAKFGLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1356
+ G D+ + ++++ +G +P+ +P+ VR L F A ++ ++ LK
Sbjct: 60 QVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQ-FI----AGIY-GMKGQLLKQ 112
Query: 1357 AIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
+ +GL + + S G RQ + L++AL+ K+L+LDE T +D I
Sbjct: 113 RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172
Query: 1415 QKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 1460
+ I+ K T+++ H + + CDR+++++ G+++ +EL
Sbjct: 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 4e-13
Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 1308
++ +S I ++G +G GKS+ L ++ R+ +L G IL +G +I +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1351
+++LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD---- 152
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+KD + ++L L S GQ+Q L ++R L + +L+LDE +A+D ++
Sbjct: 153 -EVKDRLHSSALSL-----------SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
A I++ I E + +++I+ H + + DR +G ++EYD E++ ++
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 64/242 (26%)
Query: 615 ISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG----- 665
+++RN ++ SK +INLDI G V VG +G GK++L+ + G
Sbjct: 4 VTLRNVTKAYGDVVISK-------DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT 56
Query: 666 ------------ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA----- 708
++PP ++ + A P +S V +N+ FG A
Sbjct: 57 SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEEI 110
Query: 709 --RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 766
R + +V L H LD P +SGGQ+QRV++ R + + VF+ D+
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 767 PLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKE 819
PLS LDA + Q +R E+S G+T + VT +Q+ ++ D+I+++ G V +
Sbjct: 160 PLSNLDAALRVQ-----MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 820 EG 821
G
Sbjct: 215 VG 216
|
Length = 369 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 5e-13
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAML----GEL----PPVSDASAV--- 676
L NI+L+I G +V I+G +G GK++L I+ + G+L V+D
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 677 IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
IR V Q ++F + T +N++FG P R A + + +LL ++G
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFG----PLRVRGASKEEAEKQARELL-----AKVG 125
Query: 736 --ERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 789
ER +SGGQ+QRV++ARA+ + +FD+P SALD + +V + ++ +L+
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQ-DLA 183
Query: 790 --GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
G T V+VT+++ F +V R+I + +G + E+G + L N
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 5e-13
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 48/237 (20%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-----LID--------- 1300
VLHG+ + P + V I+G +G+GK+++L + + + E G I ID
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1301 ----------GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 1350
GF F L R +L I + PV+ G + + A
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK------------EEATARA 125
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
R L +GL + + S GQ+Q ++++RAL R ++++ DE T+A+D
Sbjct: 126 RELLA------KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
Query: 1411 DALIQKTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+ TIR +E + TM+I+ H ++ D DR + +D GR++E + L ++
Sbjct: 180 VGEVLNTIRQLAQEKR--TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 6e-13
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 54/257 (21%)
Query: 608 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---ML 664
T +PAI +R+ + K L +INLDIP + A++G +G GK++L+ M
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 665 GELPPVSDASAV----------------IRGTVAYVPQVSWIFNATVRDNILFG------ 702
+P V +R V V Q F ++ DN+ +G
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 703 -SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757
E ++ +L + L + + +SGGQ+QR+ +ARA+
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDRLH-----------KSALGLSGGQQQRLCIARALAV 166
Query: 758 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILV 812
+V + D+P SALD + + I EL K T V+VT H + Q D
Sbjct: 167 KPEVLLMDEPTSALDP-ISTLKIEELIT-ELKKKYTIVIVT---HNMQQAARVSDYTAFF 221
Query: 813 HEGMVKEEGTFEDLSNN 829
+ G + E G + + N
Sbjct: 222 YLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 33/206 (16%)
Query: 637 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----IRGTVAYVPQVSWIFN 692
+L++ G +VAI+G +G GK++L++ + G + P S + V G Y VS +F
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 693 A-------TVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 738
TVR NI G +A + + A + LD LP
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------- 127
Query: 739 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK--TRVLV 796
+SGGQ+QRV++AR + + + + D+P SALD + R+ ++ S + T ++V
Sbjct: 128 -QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL-REEMLALVKQLCSERQRTLLMV 185
Query: 797 TNQLHFLSQV-DRIILVHEGMVKEEG 821
T+ L + +I +V +G +K
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 6e-13
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 53/214 (24%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
++ RNG+ + L + + +P GS+ A+VG G GK++L A++G + S
Sbjct: 14 VTWRNGHTA---------LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 675 AVI---------RGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPARYE 711
+++ + VAYVPQ V W F V D ++ G +
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVT 124
Query: 712 KA---IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 768
A +D+ +H +IGE +SGGQK+RV +ARA+ V + D+P
Sbjct: 125 AALARVDMVEFRH----------RQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 769 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 800
+ +D ++ R +R E GKT ++ T+ L
Sbjct: 171 TGVDVKTEARIISLLRELRDE--GKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 39/208 (18%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 682
+++L + G ++AI+G +G GKT+L+ A+ G + S I + VA
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 683 YVPQVS-WIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 736
YV Q + TVR+ + + + K L DL L G G
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GN 139
Query: 737 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----VGRQVFDRCIRGELSGKT 792
ISGG+++RVS+A + + V I D+P S LD+ + + R +
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI---- 195
Query: 793 RVLVTNQLH-----FLSQVDRIILVHEG 815
V++T +H DRI+L+ G
Sbjct: 196 -VILT--IHQPRSDLFRLFDRILLLSSG 220
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 15/198 (7%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+ LSFT+ + + I G GAGK+++L L ++ + G + G I +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQV 1369
+L + Q + T NL + + A +WEAL + L D V
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-------EDLPV 128
Query: 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1429
S GQ++ ++L+R L + + +LDE A+D AL+ + +++
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 1430 IAHRLNTIIDCDRILLLD 1447
+ I +I LD
Sbjct: 185 LTTHQPLPIASAQIRRLD 202
|
Length = 209 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 41/218 (18%)
Query: 1271 IVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI-AKF-GLMDLRKILGIIPQSP 1323
I+G +G GKS+ L + R+ +L G ++ DG DI KF + LRK +G++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 1324 VLFSGTVRFN---------------LDPFSEHS--DADLWEALERAHLKDAIRRNSLGLD 1366
F ++ N L+ E S A LW+ + D + +N+LGL
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-----EVSDRLDKNALGL- 183
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1426
S GQ+Q L ++R L +IL+LDE T+A+D + A I+ I+E S T
Sbjct: 184 ----------SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 1427 MLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
++I+ H + D + G ++E+ +L +N
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 8e-13
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 1308
L ++ I + +G +G GKS++L T R+ EL G IL+DG +I K
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 1309 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWE----ALERAHL----KD 1356
+ LR +G++ Q P F + + F + F + S A++ E AL +A L KD
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
+ ++ L S GQ+Q L ++R + R ++L+LDE +A+D + I++
Sbjct: 149 KLHQSGYSL-----------SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197
Query: 1417 TIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
I E + T++I+ H + C D + G ++E+ + + +
Sbjct: 198 LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 637 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----TVAYVPQVSWIF 691
+L +P G +VAI+G +G GK++L++ + G P S +I G + VS +F
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLF 77
Query: 692 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 737
+ TV NI G +A + + E A L L LPG
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------- 128
Query: 738 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ-----VFDRCIRGELSGKT 792
+SGGQ+QRV++AR + + + D+P SALD + R V C T
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL-RAEMLALVSQLCDE---RKMT 182
Query: 793 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 826
++VT+ +++ DR++ + G + +G+ ++L
Sbjct: 183 LLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAV 676
++ L +I+L + G + +G G GKT+ + +LG + P S + A+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 677 IR-GTVAYVPQVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVT 732
R G + P + N T R+N+ + R ++ +DV L+ G
Sbjct: 72 RRIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKG--- 126
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 792
S G KQR+ +A A+ N D+ I D+P + LD +++ + + G T
Sbjct: 127 --------FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 793 RVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
++ ++ L + +V DRI ++++G + EEG
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 9e-13
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 1197 ASLAENSLNAVERVGNYIEL--PSEAPLVIESNRPPPGWPSSGS-IKFEDVVLRYRPELP 1253
A A++ + +E++ + P E + PPPG ++FE+V Y
Sbjct: 277 AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGR 335
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+L LSF I D++ IVG GAGKS++L L + G + K G
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV--------KVGE---T 384
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDA--DLWEALERAHLKDAIRRNSLGLDA-QVS 1370
+G Q + + E S+ D E RA+L G
Sbjct: 385 VKIGYFDQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLGR------FGFTGEDQE 434
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1430
+ S G++ L L++ LL+ +L+LDE T +D+ + +++ + +F+ T+L++
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEG-TVLLV 492
Query: 1431 AH-R--LNTIIDCDRILLLDSGRVLEYD 1455
+H R L+ + RI L++ +V E++
Sbjct: 493 SHDRYFLDRV--ATRIWLVE-DKVEEFE 517
|
Length = 530 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 624 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAY 683
++ L ++NL I G + AI+G +G GK++L++ ++G L + G
Sbjct: 5 SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETP 63
Query: 684 VP-----------QVSWIF-------NATVRDNILFGSAFEP---ARYEKAIDVTSLQHD 722
++ ++F N TV +N+ G ++ + +
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 723 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
L+L + E+ SGG++QRV++ARA+ + + D+P +LD +V D
Sbjct: 124 LNLKLKQKIYEL-------SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD- 175
Query: 783 CIRGEL--SGKTRVLVTNQLHFLSQVDRII 810
+ EL GKT ++VT+ Q DR+I
Sbjct: 176 -LLLELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 42/229 (18%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV-------- 681
+ L +++L I G VA++G +G GK++L+ + G + P S S +I GT
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS-GSVLIDGTDINKLKGKA 72
Query: 682 --AYVPQVSWIF-------NATVRDNILFGSA------------FEPARYEKAIDVTSLQ 720
Q+ IF +V +N+L G F ++A+
Sbjct: 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL------ 126
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
L+ + G + + +R +SGGQ+QRV++ARA+ + + D+P+++LD RQV
Sbjct: 127 AALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184
Query: 781 D--RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDL 826
D + I E G T ++ +Q+ DRI+ + +G + +G +L
Sbjct: 185 DLLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 60/193 (31%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 694
++L + G + A++G G GK++L+ + G P S G +
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS-------GEI------------- 57
Query: 695 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVS 750
++ G A A G+ + S G++Q V
Sbjct: 58 ----LVDGKEVSFASPRDARR---------------------AGIAMVYQLSVGERQMVE 92
Query: 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-- 806
+ARA+ N+ + I D+P +AL ++F IR L G + ++ H L +V
Sbjct: 93 IARALARNARLLILDEPTAALTPAEVERLFKV-IR-RLRAQGVAVIFIS---HRLDEVFE 147
Query: 807 --DRIILVHEGMV 817
DR+ ++ +G V
Sbjct: 148 IADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 45/225 (20%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 678
+++LD+ G + I+G +G GK++L+ + + P S + + R
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 679 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 730
++ V Q + + TV +N+ FG A R +A+++ L+ P
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-- 159
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GEL 788
+SGG +QRV +ARA+ + D+ + D+ SALD + R++ D +R EL
Sbjct: 160 ---------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210
Query: 789 SGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 829
KT V +T H L + DRI ++ +G + + GT E++ N
Sbjct: 211 -QKTIVFIT---HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 1246 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFD 1303
L +L G++ TI + ++G G+GKS++ T+ E+ G IL G D
Sbjct: 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65
Query: 1304 IAKFGLMDLRKILGII--PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1361
I + R LGI Q P G V+ D +R
Sbjct: 66 ITDL-PPEERARLGIFLAFQYPPEIPG-VK----------------------NADFLR-- 99
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1421
E FS G+++ + + LL + +LDE + +D+ L+ + I +
Sbjct: 100 ---------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NK 149
Query: 1422 FKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLE 1453
+ ++LII H RL I DR+ +L GR+++
Sbjct: 150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ + + Y E P +H T + IVG +G+GKS++LN + + GR+L
Sbjct: 1 VRLDKIRFSYG-EQP--MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1357
I+G D+ D + + ++ Q LF+ TV N+ L A +R ++ A
Sbjct: 57 INGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVG-LGLSPGLKL-TAEDRQAIEVA 112
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 1413
+ R +GL S G+RQ ++L+R L+R +L+LDE AA+D +R + L
Sbjct: 113 LAR--VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRV 1451
+ E T+L++ H+ R++ LD+GR+
Sbjct: 171 VLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 2e-12
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 47/229 (20%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 681
+++ + G + ++G G GKT+L + + G L P S + R +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 682 AYVPQVSWIF-NATVRDNILFG--------------SAFEPARYEKA---IDVTSLQHDL 723
Q+ +F TV +N++ E E+A ++ L
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
D G +S GQ++R+ +ARA+ ++ + + D+P + L +
Sbjct: 138 DRPAG-----------ELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAEL 185
Query: 784 IRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
IR EL G T +LV + + + + DR+ ++ +G V EGT +++ NN
Sbjct: 186 IR-ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 694
++ I G + +VG +G GK++L +LG P S G + +F
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-------GEI--------LFEG- 74
Query: 695 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMAR 753
+D R + ++ L E R + +SGGQ+QR+ +AR
Sbjct: 75 -KDITKLSKEERRERVLELLEKVGLP-----------EEFLYRYPHELSGGQRQRIGIAR 122
Query: 754 AVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRII 810
A+ N + + D+P+SALD V Q+ + + ++ EL G T + +++ L + + DRI
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIA 181
Query: 811 LVHEGMVKEEGTFEDLSNN 829
+++ G + E G E++ +N
Sbjct: 182 VMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 657 TSLISAMLGELPPVS-------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFG 702
++L+ + G L P S + ++R + V Q +F TVR+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 703 SAFEP--ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760
+ AR E+A++ L LD P G +SGGQKQRV++ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 761 VFIFDDPLS 769
+ + D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 39/182 (21%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 688
R ++ + G + + G G GKT+L+ + G LPP + GT+
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-------GTIKLDGGDI 66
Query: 689 WIF------------NA-----TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPG 728
NA TV +N+ F +AF E A++ L L P
Sbjct: 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-PF 125
Query: 729 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 788
G +S GQK+RV++AR + SN ++I D+P +ALDA +F IR L
Sbjct: 126 G----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHL 174
Query: 789 SG 790
+
Sbjct: 175 AQ 176
|
Length = 207 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+K D+ Y LP + T+ ++V I+G +GAGKS++LN + + G +
Sbjct: 2 LKLTDITWLYH-HLP--MR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN----LDPFSEHSDADLWEALERAH 1353
++G D R+ + ++ Q LFS TV N L+P + + A +R
Sbjct: 58 LNGQDHTT--TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA------QREK 109
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD 1411
L R+ +G++ ++ S GQRQ ++L+R L+R IL+LDE +A+D +R +
Sbjct: 110 LHAIARQ--MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
Query: 1412 --ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI----LLLDSGRVLEYDTP-EELLSNE 1464
L+ + +E + T+L+++H L D RI L++ GR+ +D P +ELLS +
Sbjct: 168 MLTLVSQVCQE--RQLTLLMVSHSLE---DAARIAPRSLVVADGRIA-WDGPTDELLSGK 221
Query: 1465 GS 1466
S
Sbjct: 222 AS 223
|
Length = 232 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 1243 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 1301
D+ RY+ E PVL GL+ S G+VG G GKS++ L ++ ++G +L G
Sbjct: 6 DLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1302 -FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA--I 1358
D +K GL+ LR+ + + Q P F D+D+ +L + +A
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP---------EQQIFYTDIDSDIAFSLRNLGVPEAEIT 114
Query: 1359 RR--NSLGL-DAQ--VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
RR +L L DAQ + + S GQ++ ++++ AL+ +++ L+LDE TA +D
Sbjct: 115 RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 1414 IQKTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
+ IR +II +H ++ I + D + +L G++L + P E+ +
Sbjct: 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 676
E + ++N + G AIVG TG GK++LI + L P + V
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 677 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID-VTSLQHDLDLLPGG 729
+R + V Q S +F TV I+FG P ++ +D V + H L + G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFG----PKNFKMNLDEVKNYAHRLLMDLGF 134
Query: 730 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL- 788
+ + +SGGQ +++++ + N D+ + D+P + LD RQV +
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 789 SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 831
KT +LV++ ++ +++ D +I++ EG + + + ++L + +
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
L G+SFTI + VG +G GAGK++ L L +++ G + + G K LR
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 1314 KILGIIPQS-------PVLFSGTVR---FNLDPFSEHSDAD-LWEALERAHLKDAIRRNS 1362
+I + Q PV+ S + ++L P D L E L+ L
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------- 146
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1422
LD V S+GQR ++ ALL +IL LDE T +DV I+ ++E
Sbjct: 147 --LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 1423 K--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455
+ T+L+ +H + I R+L++D GR+L YD
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL-YD 235
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 50/292 (17%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLI-----------------SAMLGELPPVSDASAVI 677
+ +L I G + I+G +G GK++ + + + PV + V
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-ELREVR 69
Query: 678 RGTVAYVPQVSWIF-NATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVT 732
R + V Q +F + T+ N G E R EKA L+LL +
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA---------LELLKLVGLE 120
Query: 733 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-G 790
E R + +SGG +QRV +ARA+ + D+ + D+ SALD + + D + + +
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 791 KTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 849
KT V +T+ L + DRI+++ G + + GT +++ N EYVEE
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN------------PANEYVEE 228
Query: 850 -KEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900
+ ++ A ++ + +D K L++ E ++ V
Sbjct: 229 FIGKVDLSQVFDAERIAQRMNTGPITKTAD--KGPRSALQLMRDERVDSLYV 278
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 45/216 (20%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DASA 675
L IN+ I G V +VG +G GK++L+ + E P S A
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 676 VIRGTVAYVPQVS-WIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 725
+R + V Q + + V +N+ F A E R A+++ L H
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF--ALEVTGVPPREIRKRVPAALELVGLSHKHRA 132
Query: 726 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
LP +SGG++QRV++ARA+ ++ + I D+P LD ++ + +
Sbjct: 133 LPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 786 GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMV 817
+G T V+ T H VD R+I + G +
Sbjct: 182 INKAGTTVVVAT---HAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+ GLSFT+ + + + G G+GK+++L + ++ G I +DG DI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQVS 1370
LG ++ + + TV NL+ W A E + A+ ++GL
Sbjct: 76 HYLG--HRNAMKPALTVAENLE---------FWAAFLGGEELDIAAAL--EAVGLAPLAH 122
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1430
S GQ++ ++L+R L+ I +LDE TAA+D AL + IR ++I
Sbjct: 123 LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182
Query: 1431 A 1431
A
Sbjct: 183 A 183
|
Length = 207 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
+IK +D+ Y + G+S I + I+G +G GKS+ + TL RI ELE G +
Sbjct: 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 1298 LIDGFDIAKFG---------LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDAD 1344
++G + FG + LR+ +G++ Q P F + V + + ++ AD
Sbjct: 64 KVEG-VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 1345 LWEALERA--------HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396
L E +E A +KD + +++LGL S GQ+Q L ++RAL + K+
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGL-----------SGGQQQRLCIARALAIKPKV 171
Query: 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRV-- 1451
L++DE +A+D +++ I T+ I+ H + + D D R+
Sbjct: 172 LLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQ 231
Query: 1452 -LEYDTPEELLSN 1463
+E+ ++ SN
Sbjct: 232 MVEFGVTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------R 678
R L +++L I G LV ++G +G GKT+L++ + G + P S S + R
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAER 76
Query: 679 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
G V A +P W+ V DN+ FG EKA L L+
Sbjct: 77 GVVFQNEALLP---WL---NVIDNVAFGLQL--RGIEKAQRREIAHQMLALVGLEGAEH- 127
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTR 793
+ +SGG +QRV +ARA+ + + D+P ALDA Q+ + + + +GK
Sbjct: 128 -KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQV 186
Query: 794 VLVTNQLH---FLSQVDRIIL 811
+L+T+ + FL+ R+++
Sbjct: 187 LLITHDIEEALFLA--TRLVV 205
|
Length = 259 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 3e-12
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 1313
LH +S I + V ++G GAGK+++L TL GRI+ DG DI + +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1314 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSE 1371
+ + I+P+ +FS TV NL ++ D + E ++ + + R + ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY--ELFPRL---HERRIQR 134
Query: 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI---REEFKSCTML 1428
AG S G++Q+L++ RAL+ + ++L+LDE + + I TI RE+ T+
Sbjct: 135 AG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIF 191
Query: 1429 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
++ N + DR +L++G V+ DT + LL+NE
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 1308
L+ +S P++ ++G +G+GKS++L ++ R+ +L G I+ +G +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1309 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERA--------HLKD 1356
+DLRK +G++ Q P F + V + L L EA+E++ +KD
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
+ ++LGL S GQ+Q + ++R L KI++LDE T+A+D + I++
Sbjct: 141 RLHDSALGL-----------SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 1417 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
T+ TML++ + DR G ++EY+ +++ N
Sbjct: 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (167), Expect = 3e-12
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF-G 1308
VL +S P ++G TG+GK++ L TL R+ + G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1309 LMDLRKILGIIPQSPVLF---------SGTVRFNLDPFSEH--------SDADLWEALER 1351
+++ R+ +G++ Q P F +G L P E ++ LW+A+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-- 153
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
KD ++S++ S GQ+QLL L+R L ++L+LDE T+A+D T
Sbjct: 154 ---KD-----------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
I++ IR T++I+ H L DR L GR++E E+L S+
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 3e-12
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 50/220 (22%)
Query: 1243 DVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 1301
+ VL R + + +SF + + VGI G G G++ + LF + G I +DG
Sbjct: 2 EPVLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG 61
Query: 1302 FDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 1359
+ + D + GI +P+ +R +
Sbjct: 62 KPVTRRSPRDAIR-AGIAYVPE----------------------------DR-------K 85
Query: 1360 RNSLGLDAQVSEAGENFSVGQR------QLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
R L LD V EN ++ Q + L+R L R ++L+LDE T VDV A
Sbjct: 86 REGLVLDLSV---AENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142
Query: 1414 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1451
I + IRE + +L+I+ L+ ++ CDRIL++ GR+
Sbjct: 143 IYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-12
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 29/157 (18%)
Query: 634 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 677
L +NL +P + AI G +G GKTSLI+A+ G P + DA I
Sbjct: 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74
Query: 678 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
+ + YV Q + +F + VR N+ +G + A+++K + + ++ LD PG
Sbjct: 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG------- 127
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
++SGG+KQRV++ RA+ + ++ + D+PL++LD
Sbjct: 128 ----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 4e-12
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 1312
L ++ IP IVG+ G GKSS+L + ++ G++ + ++
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 1313 ---RKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
R + Q P L + TV N+ PF++ + +A L+ I G
Sbjct: 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDA---CSLQPDIDLLPFGDQ 131
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFK-- 1423
++ E G N S GQRQ + ++RAL + + I+ LD+ +A+D+ +D L+Q+ I + +
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 1424 SCTMLIIAHRLNTIIDCDRILLLDSG 1449
T++++ H+L + D I+ + G
Sbjct: 192 KRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ E+V Y + L G+S I + ++G +G GK+++L + G IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAH 1353
+DG DI L ++ + + Q+ LF + F L L +A +
Sbjct: 59 LDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGL------RLKKLPKAEIKER 110
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
+ +A+ + L+ + S GQ+Q ++++RAL+ K+L+LDE A+D++
Sbjct: 111 VAEALDL--VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK---- 164
Query: 1414 IQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1466
++K ++ E K T + + H + + DRI +++ G++ + TPEE+ +
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPAN 224
Query: 1467 SF 1468
F
Sbjct: 225 RF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 4e-12
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 32/244 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 1294
IK E++ L Y + L +S IP + ++G +G GKS+ + L R+ +L +
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 1295 -GRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 1351
G++ I+G DI + + ++LRK +G++ Q P F P S + + +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---------PMSIYDNVAYGPRIHG 121
Query: 1352 AHLKD--AIRRNSLGLDAQVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEA 1402
A+ KD + N+L A E + + S GQ+Q L ++R L + KI++ DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 1403 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEE 1459
T+A+D + A I+ I K T++I+ H + I D L+ G ++E+ +
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEFGQTRQ 239
Query: 1460 LLSN 1463
+ N
Sbjct: 240 IFHN 243
|
Length = 258 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 1308
L +S IP + ++G +G GKS+ L + R+ ++ R G + G ++ A
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 1362
+ LR+ +G++ Q P F ++ N + + D + E+L RA L D ++
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1422
Q+ +G + S GQ+Q L ++RA+ +++++DE +A+D + I+ I E
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1423 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 1463
+ T++I+ H + I + L G ++E+D +++ N
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 31/160 (19%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-----------V 681
L N++L++ G I+G TG GK+ L+ + G + P S ++ G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-GKILLNGKDITNLPPEKRDI 73
Query: 682 AYVPQVSWIF-NATVRDNILFG----SAFEPARYEKAIDVTSL---QHDLDLLPGGDVTE 733
+YVPQ +F + TV NI +G + K +++ + H L+ P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 734 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
+SGG++QRV++ARA+ N + + D+P SALD
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 625 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------- 671
+ E L + L + G VAIVG +G GK++L++ + G P S
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL 77
Query: 672 --DASAVIRG-TVAYVPQ-VSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQ 720
DA A +R V +V Q I N T +N+ SA A + ++ L
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG 137
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
L P +SGG++QRV++ARA DV D+P LD G ++
Sbjct: 138 KRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 781 DRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 820
D + L+ G T VLVT+ ++ DR + + G + E+
Sbjct: 187 D--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLM 1310
+L G+ + + V IVG +G+GKS++L L + + G + + G + K
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 1311 DLR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER----AHLKDAIRRNS--- 1362
LR + +G + QS F+L P ALE L+ +S
Sbjct: 84 ALRARHVGFVFQS---------FHLIPN--------LTALENVALPLELRGESSADSRAG 126
Query: 1363 -------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----- 1410
+GL +++ S G++Q ++L+RA R +L DE T +D T
Sbjct: 127 AKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 1411 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
D L RE + T++++ H CDR L L SGR++E
Sbjct: 187 DLLFALN-RE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 24/218 (11%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMD 1311
+L G++ T+ + I+G G+GKS++ T+ E+ G IL G D+ + D
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPD 72
Query: 1312 LRKILGII--PQSPVLFSG--TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN--SLGL 1365
R G+ Q P G + F + A E L+ ++ LG+
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 1366 DAQVSEAGEN--FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL------IQKT 1417
D + N FS G+++ + + L K+ +LDE + +D+ DAL I +
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI--DALKIVAEGINR- 189
Query: 1418 IREEFKSCTMLIIAH--RLNTIIDCDRILLLDSGRVLE 1453
+RE +S LII H RL I D + +L GR+++
Sbjct: 190 LREPDRSF--LIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-12
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 606 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 665
P+ P I ++N + + L +++ + G AIVG G GKT+L+S + G
Sbjct: 23 HPIEINEPLIELKNVSVR---RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79
Query: 666 ELPPVSDASAV-------------IRGTVAYV-PQVSWIF--NATVRDNILFGSAFEPAR 709
E PP S + +R + V ++ F TVRD +L G
Sbjct: 80 EHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139
Query: 710 YEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPL 768
Y++ + L LL + +R ++S G+++RV +ARA+ + ++ I D+P
Sbjct: 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 769 SALD 772
LD
Sbjct: 200 QGLD 203
|
Length = 257 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 1239 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
+K E++ RY+ VL G+S +I + V IVG +G+GKS++L+ L + G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 1297 ILIDGFDIAKFG---LMDLR-KILGIIPQ---------------SPVLFSGTVRFNLDPF 1337
+L +G ++K LR K LG I Q P+L
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSV------ 115
Query: 1338 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397
+ + +E LE+ L+ I + + SE S G+RQ ++++RAL+ + ++
Sbjct: 116 -KEAKERAYEMLEKVGLEHRI-------NHRPSE----LSGGERQRVAIARALVNQPSLV 163
Query: 1398 VLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
+ DE T +D +I + E + + L++ H L DR+L + G++
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 6e-12
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 1308
L ++ I ++ I+G +G GKS+ + TL R+VEL G+IL +I +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1351
+ +LR +G++ Q P F ++ N LD E S A +W+
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---- 155
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
LKD + N+ GL S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 156 -ELKDRLHDNAYGL-----------SGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST 203
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+++ ++E K +++I+ H + D+ +G V EYD +++ SN
Sbjct: 204 LKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256
|
Length = 271 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-12
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 63/234 (26%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------------VSDASAVIR 678
++L + G + A++G G GK++L+ + G PP DA A
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA--A 83
Query: 679 GTVAYVPQ-VSWIFNATVRDNILFGSAFEP-------------ARYEKAIDVTSLQHDLD 724
G +A V Q +S + N +V +NI G EP R + + L D D
Sbjct: 84 G-IATVHQELSLVPNLSVAENIFLGR--EPTRRFGLIDRKAMRRRARELLARLGLDIDPD 140
Query: 725 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
L G ++S Q+Q V +ARA+ ++ V I D+P +AL ++FD I
Sbjct: 141 TLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-I 188
Query: 785 RGEL--SGKTRVLVTNQLHFLSQV----DRII------LVHEGMVKEEGTFEDL 826
R L G + ++ H L +V DRI +V E + ++L
Sbjct: 189 R-RLKAQGVAIIYIS---HRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238
|
Length = 500 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 681
L ++L + G + ++G G GKT+L+ + PP S + +R +
Sbjct: 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 682 AYVPQ-VSWIFNATVR---DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 737
Y+PQ N TVR D I + + +D L+L+ ++ + ++
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV-----LELV---NLGDRAKK 126
Query: 738 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVL 795
+ +SGG ++RV +A+A+ + + I D+P + LD R F R + EL + +L
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRF-RNLLSELGEDRIVIL 184
Query: 796 VTNQLHFLSQV----DRIILVHEGMVKEEG 821
T H + V +++ ++++G + EG
Sbjct: 185 ST---HIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 7e-12
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 1307
V+ G+ IP + ++G +G GKS++L T R++EL G + + G +I
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 1308 GLMDLRKILGIIPQSPVLFSGT---------VRFN--LDPFSEHSDADLWEALERAHLKD 1356
+++R+ +G++ Q P F V+ N + E + W AL++A L D
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW-ALKKAALWD 137
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
++ ++++ N S GQRQ L ++RAL + KIL++DE TA +D A I++
Sbjct: 138 EVKD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 1417 TIREEFKSCTMLIIAH 1432
+ E K T++++ H
Sbjct: 191 LLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 1307
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 1308 GLMDLRKILGIIPQSPVLFSG-TVRFNL--DPF------SEHSDADLWEALERAHLKDAI 1358
+ DLR+ +G++ Q L+ TV+ NL P + + A + L+R LK
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A I I
Sbjct: 136 DRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 1419 RE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453
+E T +I+ H + R++ +++G ++E
Sbjct: 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 1308
LH +S + ++G +G GKS+ L L R+ +L G IL+DG +I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 1309 LMDLRKILGIIPQSPVLFSGTV--------RFN-------LDPFSEHS--DADLWEALER 1351
+++LR+ +G++ Q P F ++ R N L E S A LW+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD---- 137
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+KD + ++LGL S GQ+Q L ++RAL ++L++DE +A+D
Sbjct: 138 -EVKDRLHESALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
I++ I E T++I+ H + D G+++E E++ +
Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 8e-12
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----------PVSDASAVIR 678
+P L +INL + G L+ ++G +G GKT+L++ + G +P PV A R
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE-R 72
Query: 679 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
G V +P W V+DN+ FG + A EK + L + +
Sbjct: 73 GVVFQNEGLLP---W---RNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKV---GLEGA 121
Query: 735 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
+R + +SGGQ+QRV +ARA+ +N + + D+P ALDA
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 8e-12
Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IR 678
RP + +N+ + A +G G GKT+ +S + G LPP S V +R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 679 GTVAYVPQVSWIFN-ATVRDNILF-----GSAFEPAR--YEKAIDVTSLQHDLDLLPGGD 730
++ PQ + +F+ TV ++ILF G ++E A+ E ++ T L H +
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN------ 1056
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 790
E ++SGG ++++S+A A ++ V + D+P S +D + R ++D ++ SG
Sbjct: 1057 -----EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG 1110
Query: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 822
+T ++ T+ + + DRI ++ +G + GT
Sbjct: 1111 RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 9e-12
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 42/237 (17%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 676
E+ L N+N++I G V ++G TG GK++LI + G L P S +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78
Query: 677 --IRGTVAYVPQVS--WIFNATVRDNILFG------SAFE-PARYEKAIDVTSLQHD--L 723
IR V V Q +F T+ +I FG S E R ++A+++ L ++
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK 138
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
D P +SGGQK+RV++A V + I D+P + LD GR
Sbjct: 139 DKSP-----------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK-GRDEILNK 186
Query: 784 IRGELSGK---TRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
I+ EL + T +LV++ + +++ DRII++++G + +GT ++ E + +
Sbjct: 187 IK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESI 242
|
Length = 287 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 9e-12
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 40/232 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI-AKFGL 1309
L ++ IP ++G +G GKS++L L R+ +L G ++ +DG DI +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 1310 MDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALERA 1352
DLR +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD----- 133
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
+KD ++ ++ GL S GQ+Q L ++R + ++++DE T+A+D
Sbjct: 134 EVKDRLKSHAFGL-----------SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182
Query: 1413 LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
I++ + E K+ T++I+ H + DR G ++E+D + + SN
Sbjct: 183 KIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 37/231 (16%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSML------NTLFRIVELERGRILIDGFDI--AKF 1307
L+ ++ I + ++G +G GKS+ L N L V++E G +L+DG +I
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIYDKDV 78
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDAD--LWEALERAHL----K 1355
+++LRK +G++ Q P F ++ N + + + D + AL++A L K
Sbjct: 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
D +++++L L S GQ+Q L ++R + + ++++DE T+A+D + I+
Sbjct: 139 DDLKKSALKL-----------SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 1416 KTIREEFKSCTMLIIAHRL---NTIIDCDRILLLDSGRVLEYDTPEELLSN 1463
+ E K T++I+ H + + + D L+ G ++E++ E++
Sbjct: 188 DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEKIFLE 236
|
Length = 251 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 677
+R + +++L++ G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPM 73
Query: 678 ----RGTVAYVPQVSWIF-NATVRDNI-LFGSAFEPARY--EKAIDVTSLQHDLDLLPGG 729
R + Y+PQ + IF TV DNI E E+ ++ +L + +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 730 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGEL 788
D + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L
Sbjct: 134 D-----SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHL 185
Query: 789 SGK-TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
+ VL+T N L DR ++ +G V EG+ E++ NN
Sbjct: 186 KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 31/221 (14%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 677
R + ++L + G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMH 70
Query: 678 ---RGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
R + Y+PQ + IF TV +NIL + E K L+ L+ +T
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEF---HITH 125
Query: 734 IGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGELSGK 791
+ + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L +
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA---VQDIQKIIKILKDR 182
Query: 792 -TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
VL+T N LS DR +++EG V EGT E+++ N
Sbjct: 183 GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 47/230 (20%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML------------------------GELP 668
L +N + G VA++G +G GK++++ ++ G L
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 669 PVSDAS-AVIRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARYEKA----IDVTS 718
P + +R + V Q +F + TV DN+ A EK +D+
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG 135
Query: 719 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
L D +P +SGGQ+QRV++ARA+ V +FD+ SALD + +
Sbjct: 136 LADKADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 779 VFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 826
V + R T +LVT+++ F + DR+ +G + E+G +++
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 40/270 (14%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I ++N F + E+ TL +++ + G ++I+G G GK++ + + G L S
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES-GQ 63
Query: 675 AVIRG---TVAYV----PQVSWIFN--------ATVRDNILFGSAFEPARYEKAIDVTSL 719
+I G T V ++ +F ATV D++ FG + +E+ +
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM--KERV 121
Query: 720 QHDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
L+L+ + + ER +SGGQKQRV++A AV + I D+ S LD GR
Sbjct: 122 NEALELV---GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRL 177
Query: 779 VFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE----- 831
+ I+G + T + +T+ L ++ DR++++ G V+ T +L + G
Sbjct: 178 ELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQL 237
Query: 832 ---------LFQKLMENAGKMEE-YVEEKE 851
L Q L +N + E Y+ EKE
Sbjct: 238 GLDIPFTTSLVQSLRQNGYDLPEGYLTEKE 267
|
Length = 279 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 668
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 669 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 714
P A +R V V Q ++ + TV+ N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA----PCRVLGLS 114
Query: 715 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 774 HVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 822
+ Q+ I EL+ G T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 3e-11
Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 15/266 (5%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GELP--PVSDASAVI 677
++A R L +++ + G V ++G TG GK++L+SA+L GE+ VS S +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL 1287
Query: 678 ---RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
R +PQ +IF+ T R N+ + K + L+ ++ P +
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 794
+ G +S G KQ + +AR++ S + + + D+P + LD V Q+ + ++ S T +
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP-VTLQIIRKTLKQSFSNCTVI 1406
Query: 795 LVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE 854
L +++ L + + +++ VK+ + + L N LF++ M A +++ + + +
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNSS 1466
Query: 855 TVDNKTSKPAANGVDNDLPKEASDTR 880
+ +P + + +E +TR
Sbjct: 1467 ---KRKPQPKITALREEAEEEVQNTR 1489
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 48/238 (20%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLI-----------SAMLGELPPVSDASA----VI 677
L NINL+I G VAI+G +G GK++L+ ++L E ++ +
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 678 RGTVAYVPQ-VSWIFNATVRDNILFG------------SAFEPARYEKAIDVTSLQHDLD 724
R + + Q + I TV +N+L G F E+A+ L+
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA------LE 131
Query: 725 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 782
+ G + +R +SGGQ+QRV++ARA+ D+ + D+P+++LD +QV D +
Sbjct: 132 RV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189
Query: 783 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
I E G T V++ LH + DRI+ + G + +G +L + E+ + +
Sbjct: 190 RINKED-GIT-VIIN--LHQVDLAKKYADRIVGLKAGEIVFDGAPSELDD--EVLRHI 241
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 636 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYV 684
+N + G + +G G GKT+ I + L P S + V +R ++ V
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIV 71
Query: 685 PQ-VSWIFNATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 739
PQ S + T R+N+ + E+A + LL ++ E +R V
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE---------LLELFELGEAADRPV 122
Query: 740 -NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 798
SGG ++R+ +A ++ DV D+P + LD R ++D IR +L+T
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY-IRALKEEGVTILLTT 181
Query: 799 QLHFLSQV----DRIILVHEGMVKEEGTFEDL 826
H++ + DRI ++ G + EGT E+L
Sbjct: 182 --HYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 688
E L +++ ++P G + ++G G GK++L+ + G PP S GTV +VS
Sbjct: 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS-------GTVTVRGRVS 86
Query: 689 WIF--------NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
+ T R+NI E I + +E+
Sbjct: 87 SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII--------------EFSEL 132
Query: 735 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 789
G+ S G K R++ A A D+ + D+ L+ DA + R +R L
Sbjct: 133 GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRR-LRELLKQ 191
Query: 790 GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
GKT +LV++ + ++ DR +++ +G ++ +G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 1261 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 1320
+ + +G++G GAGK+++L + ++ +G + + G K + +G +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 1321 QS-------PVLFSGTVRFN----LDPFSEHSDAD---LWEALERAHLKDAIRRNSLGLD 1366
Q P+ + TV + AD + +AL R L + R
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR------ 109
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 1425
GE S GQRQ + ++RAL R +L+LDE +D+ T Q+ + E F
Sbjct: 110 ----PVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT----QELLTELFIELA 160
Query: 1426 ----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461
+L+ H L + CDR++LL+ GRV+ TP++L
Sbjct: 161 GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-11
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 9/271 (3%)
Query: 1201 ENSLNAVERVGNYIELPSEAPLVIES--NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1258
E +L E + +E P + +S R PG +K ++V + P P +
Sbjct: 891 ERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVK--NLVKIFEPSGRPAVDR 948
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
L+ T + +G GAGK++ L+ L ++ G +L+ G DI + L +R+ LG+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 1319 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1378
PQ +LF F WE A L+ GL + +E ++ S
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064
Query: 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI- 1437
G ++ LS++ A + +K++VLDE T+ VD + I + + T+++ H ++
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEAD 1124
Query: 1438 IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
+ DRI ++ GR+ TP L + G+ F
Sbjct: 1125 LLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI--AKFG 1308
L+ ++ I + ++G +G GKS+ L TL R+ +L G ++ +G +I F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1351
+++LR+ +G++ Q+P F ++ N LD E S + LW
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN---- 138
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+KD + N+L L S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 139 -EVKDKLNTNALSL-----------SGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
I++ I +S T++I+ H + DR +G + E + +EL N
Sbjct: 187 GKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
|
Length = 254 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 1311
+L G++ T+ + I+G G+GKS++ T+ E+ G IL DG DI +
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL-----E 72
Query: 1312 L------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--L 1363
L R + + Q PV G V N D +A ++ + L
Sbjct: 73 LSPDERARAGIFLAFQYPVEIPG-VT-NSDFLRAAMNARRGARGILPEFIKELKEKAELL 130
Query: 1364 GLDAQVSE--AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL--IQKTIR 1419
GLD + E E FS G+++ + + LL K+ +LDE + +D+ DAL + + I
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI--DALKIVAEGI- 187
Query: 1420 EEFKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLEYDTPE--ELLSNEG 1465
+ +LII H RL I D++ +L GR+++ PE E L +G
Sbjct: 188 NALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEKG 239
|
Length = 251 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 44/233 (18%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E+V R+ L L+ I + V ++G +G GK++ L + + E GRI
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL-KD 1356
I G D+ D R I ++ Q+ L+ TV N+ F L+ + KD
Sbjct: 59 IGGRDVTDLPPKD-RDI-AMVFQNYALYPHMTVYDNI-AF----------GLKLRKVPKD 105
Query: 1357 AIRR------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
I L ++ + + S GQRQ ++L RA++R K+ ++DE + +
Sbjct: 106 EIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL---- 161
Query: 1411 DALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSGRV 1451
DA ++ +R E K + RL T I D DRI +++ G++
Sbjct: 162 DAKLRVQMRAELKR-----LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 51/251 (20%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I+I N S+ +K L +++LDIP G + +I+G G GK++L+S M L
Sbjct: 2 ITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGE 57
Query: 675 AVIRG-------------TVAYVPQVSWI-FNATVRDNILFGSAFEPARY---------- 710
I G ++ + Q + I TVRD + FG R+
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG------RFPYSQGRLTKE 111
Query: 711 -EKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPL 768
+ I+ ++ L + ++ +R ++ +SGGQ+QR +A + ++D + D+PL
Sbjct: 112 DRRIINEA-----IEYL---HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 769 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 825
+ LD Q+ R + EL GKT V+V + ++F S D I+ + G V ++G+ ++
Sbjct: 164 NNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 826 L---SNNGELF 833
+ E++
Sbjct: 223 IIQPEILSEIY 233
|
Length = 252 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDG--FDIAKFGL 1309
+L+ +S + + I+G +G+GK+++L+ + VE G+IL +G +F
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF-- 79
Query: 1310 MDLRKILGIIPQSPVLFSG-TVRFNL---------DPFSEHSDADLWEALERAHLKDAIR 1359
+K + + Q +L G TVR L S+ E + L
Sbjct: 80 ---QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI 136
Query: 1360 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419
+L + S G+R+ +S++ LL K+L+LDE T+ +D T + T+
Sbjct: 137 GGNLV---------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 1420 EEFKSCTMLIIAHRLNTIIDC-------------DRILLLDSGRVL 1452
+ +A R N I+ DRILLL SG ++
Sbjct: 188 Q---------LARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRI----LIDGFDIAKFGLMDL 1312
L+F++ + +GIVG +G+GKS T F ++ L GRI +G +I +L
Sbjct: 35 LNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91
Query: 1313 RKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGL 1365
K+ + +I Q P+ +L+P+ + L E L + +A + L
Sbjct: 92 NKLRAEQISMIFQDPMT-------SLNPYMRVGE-QLMEVLMLHKGMSKAEAFEESVRML 143
Query: 1366 DA-QVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
DA ++ EA + FS G RQ + ++ ALL R K+L+ DE T A+DV A I
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 1418 IRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
+ E EF + +++I H L + CD++L++ +GR +EY ++
Sbjct: 204 LNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 50/196 (25%), Positives = 99/196 (50%), Gaps = 31/196 (15%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 1311
+S P + I+G +G GKS++L ++ R+ +L G+IL+D DI G+ +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 1312 LRKILGIIPQSPVLFSG-------TVRFNLDPFSEHSDAD--LWEALERAHL----KDAI 1358
+R+ +G++ Q P F + L+ S+AD + +L+R L KD +
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
+ N++ L S GQ+Q L ++R + + +++++DE +A+D + I++ I
Sbjct: 143 KSNAMEL-----------SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 1419 REEFKSCTMLIIAHRL 1434
E + T++I+ H +
Sbjct: 192 EELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 16/225 (7%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I I + +++ +P L ++ I G V I G TG GK+SL A + + D
Sbjct: 20 IKIHDLCVRYENNL-KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGK 77
Query: 675 AVIRGT-VAYVP------------QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 721
VI G ++ +P Q +F+ ++R N+ R +A+++ L++
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 722 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
+ LPGG + E G N S GQ+Q +ARA S + I D+ +++D +
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQ 196
Query: 782 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
+ + + +T V + +++ + D ++++ G++ E T E+L
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 5e-11
Identities = 105/515 (20%), Positives = 196/515 (38%), Gaps = 41/515 (7%)
Query: 961 SLLSFGQV-LVTLANSYWLIISSLYAAKR----LHDAMLHSILRAPMVFFHTNPLGRIIN 1015
SL SFG + L+ L I YA L A+ IL AP+ +I
Sbjct: 55 SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIP 114
Query: 1016 RFAKDLGDIDR------NVAVFVNMFMGQVSQL--LSTFVLIGIVSTMSLWAIMPLLLLF 1067
D+ I+ +A+ + +F ++ L LS + +S + + LL F
Sbjct: 115 LLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAA-QLLAF 173
Query: 1068 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 1127
+ ++ + E + T + + ++G+ R A+ + + D +I
Sbjct: 174 MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIR--RLSFAHGAIQESANNIADLHI 231
Query: 1128 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 1187
L+ + A + + ++ G ++ A FA + + A + LL Y
Sbjct: 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAIS-----AFVLALL--YIKGPL 284
Query: 1188 SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP--SSGSIKFEDVV 1245
+L + L + + A+ + + G P + +++ S SI+ +DV
Sbjct: 285 EMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDV- 343
Query: 1246 LRYRPELPP-----VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 1300
P+ P L + I D V IVG G GKS++ + + G IL+D
Sbjct: 344 -HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
Query: 1301 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 1360
G ++ D R + I LF + + + +A + L+R + D ++
Sbjct: 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY--LQRLEIADKVKI 460
Query: 1361 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1420
G + S GQ++ L+L A L IL+ DE A D + +
Sbjct: 461 EDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 1421 EFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
+ K T++II+H D+I+ L +G +++
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-11
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 33/277 (11%)
Query: 560 SLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN 619
SL+L LR PL + +++A V+ ++ + LA K P P + +RN
Sbjct: 269 SLTLL-FLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRN 327
Query: 620 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML--GELPPVS-----D 672
F++ ++ INL I G L+ ++GG G GK++L AML G P S D
Sbjct: 328 VTFAYQ--DNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--AMLLTGLYQPQSGEILLD 383
Query: 673 ASAVIRGT-VAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLD 724
V Y S +F D LF G PA EK ++ + H L+
Sbjct: 384 GKPVTAEQPEDYRKLFSAVFT----DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE 439
Query: 725 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
L G ++ + +S GQK+R+++ A+ D+ + D+ + D H R+ F + +
Sbjct: 440 -LEDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHF-RREFYQVL 492
Query: 785 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 819
L GKT +++ H+ DR++ + G + E
Sbjct: 493 LPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-11
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 35/214 (16%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTV-------- 681
N+NL I G++V ++G +G GKT+++ + G P D V ++
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 682 ----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 737
A P +S + +N+ +G + K ++ L+L+ D+ +R
Sbjct: 84 FQSYALFPHMS------LGENVGYG--LKMLGVPKEERKQRVKEALELV---DLAGFEDR 132
Query: 738 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---GKTR 793
V+ ISGGQ+QRV++ARA+ V +FD+PLS LDA++ R + ++ IR EL T
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK-IR-ELQQQFNITS 190
Query: 794 VLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
+ VT +Q + D +I++++G + + G+ ++L
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
+ GLSFT+ + + + G G+GK+++L L + GR+L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1315 ILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373
+L + + + +V NL + ++HSD + EAL R GL+
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV-----------GLNGFEDRPV 123
Query: 1374 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1431
S GQ++ ++L+R LL + +LDE T A+D A + + M+++
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 49/214 (22%), Positives = 105/214 (49%), Gaps = 11/214 (5%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
+ +SF +PP + G++G GAGK++ + ++E G I +G +++ +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKN 72
Query: 1315 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373
+G +P+ L+ TV L +E E + L+ + R L + + ++
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI--QKKLQAWLER--LEIVGKKTKKI 128
Query: 1374 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIREEFKSCTMLIIAH 1432
+ S G +Q + A++ ++L+LDE + +D V + L + + T++ +H
Sbjct: 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH 188
Query: 1433 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465
R+ + + CDR+L+L G+ + Y T E++ + G
Sbjct: 189 RMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-11
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 643 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTV----------AYVPQVSWI 690
G L+A++G +G GKT+L++A+ P S ++ G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF 110
Query: 691 FNA-TVRDNILFGSAFE-PARY---EKAIDVTSLQHDLDLLPGGDVTEIGERGV--NISG 743
TVR++++F + P R EK V + L L + T IG G +SG
Sbjct: 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSG 169
Query: 744 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ--LH 801
G+++R++ A + ++ + D+P S LD+ + V GKT + +Q
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSE 229
Query: 802 FLSQVDRIILVHEGMVKEEGT 822
D+IIL+ EG V G+
Sbjct: 230 LFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-11
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 639 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 697
+I G ++ I+G G GKT+ + + G + P + ++ V+Y PQ +S ++ TV D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLK--VSYKPQYISPDYDGTVED 420
Query: 698 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVY 756
+ + + + T + L+L + ER V +SGG+ QRV++A A+
Sbjct: 421 ---LLRSAIRSAFGSSYFKTEIVKPLNLED------LLERPVDELSGGELQRVAIAAALS 471
Query: 757 SNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVH 813
+D+++ D+P + LD R + + IR E + KT ++V + ++ + V DR+I V
Sbjct: 472 READLYLLDEPSAYLDVE-QRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI-VF 529
Query: 814 EGMVKEEG 821
EG + G
Sbjct: 530 EGEPGKHG 537
|
Length = 591 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 8e-11
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 1307
VLH L+ I + +G +G GKS+ L L ++ +L G I G + K
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLG 1364
++LR +G++ Q P F ++ N+ ++ D + E + LK A + +
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1424
D + +AG S GQ+Q L ++RA+ ++L++DE T+A+D A I++ I E K
Sbjct: 217 DD--LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK 274
Query: 1425 CTMLIIAHRL 1434
+++I+ H +
Sbjct: 275 YSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 683
++ + G + ++G G GKT+ I + L P S + V +R +
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 684 VPQVSWIFNA-TVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-N 740
V Q + + T +N+ + + E+ + +LL + E +R V
Sbjct: 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERR------ERIDELLDFVGLLEAADRLVKT 131
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 800
SGG ++R+ +AR++ +V D+P LD V++ + + +L+T
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT-- 189
Query: 801 HFLSQV----DRIILVHEGMVKEEGTFEDL 826
H++ + DR+ ++ G + EGT E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG------- 665
I +N F + S A TL +++ +IP G +IVG G GK+++ M+G
Sbjct: 6 SIIVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 666 -----ELPPVSDASAVIR---GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID-V 716
D +R G V P ++ + V+ ++ FG Y++ V
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 717 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
+ +D+L D +SGGQKQRV++A + N V I D+ S LD
Sbjct: 124 SEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-A 177
Query: 777 RQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF 833
RQ +R ++ + + + + H LS+ D +I++++G V +EGT ++ ++ E
Sbjct: 178 RQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
Query: 834 QKL 836
++
Sbjct: 237 TRI 239
|
Length = 269 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 1246 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---F 1302
L +R L +FT+P + G +G+GK+S++N + + + GRI ++G
Sbjct: 4 LNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV 63
Query: 1303 DIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIR 1359
D K F + R+I G + Q LF TVR NL S RA +
Sbjct: 64 DAEKGIFLPPEKRRI-GYVFQDARLFPHYTVRGNLRYGMWKSM--------RAQFDQLVA 114
Query: 1360 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--K 1416
LG++ + S G++Q +++ RALL ++L++DE A++D+ R ++ +
Sbjct: 115 --LLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172
Query: 1417 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+R+E +L ++H L+ ++ DR+++L++G+V EE+ +
Sbjct: 173 RLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 36/233 (15%)
Query: 627 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------- 679
+ L NIN P S +A++G G GK++L G L P S S +IRG
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS-GSVLIRGEPITKEN 72
Query: 680 ------TVAYVPQVS--WIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLD 724
V V Q IF+ TV +I FG R A+ + L+ D
Sbjct: 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD 132
Query: 725 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
+P ++SGG+K+RV++A + V + D+P + LD +++ D
Sbjct: 133 RVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 785 R-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQK 835
E G T + T+QL + ++ D I ++ +G + GT E++ +L +
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 43/199 (21%)
Query: 604 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI-- 660
+ + I +RN F + A L NINLDI + A +G +G GK++L+
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYGKFHA----LKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 661 ---------------SAML-GE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 702
+L GE L P D A++R V V Q F ++ DNI FG
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDI-ALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
Query: 703 -SAFEP-------ARYEKAIDVTSLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMAR 753
FE R E A+ +L +++ D L + G ++SGGQ+QR+ +AR
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--------HQSGYSLSGGQQQRLCIAR 169
Query: 754 AVYSNSDVFIFDDPLSALD 772
+ +V + D+P SALD
Sbjct: 170 GIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 32/229 (13%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---------FDIAK 1306
L+ LSF++ P + ++G GAGK+++++ + + G +L DG IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 1307 FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN---- 1361
G+ RK Q P +F TVR NL+ + + D ++ +L A L+ RR
Sbjct: 81 AGIG--RKF-----QKPTVFENLTVRENLE-LALNRDKSVFASL-FARLRAEERRRIDEL 131
Query: 1362 --SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT-- 1417
++GL + S GQ+Q L + L + K+L+LDE A + TDA +KT
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM---TDAETEKTAE 188
Query: 1418 -IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
++ ++L++ H + + + D++ +L G VL + +E+ ++
Sbjct: 189 LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 55/240 (22%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
+ ++ S+D K + I+LD+ G + +VG +G GK++L+ M+ L ++
Sbjct: 3 GLKLQAVRKSYDGKT--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLR-MVAGLERITSG 59
Query: 674 SAVIRGTV-----------AYVPQVSWIFN------ATVRDNILFG-------SAFEPAR 709
I G V A V Q N +VR+N+ +G A R
Sbjct: 60 EIWIGGRVVNELEPADRDIAMVFQ-----NYALYPHMSVRENMAYGLKIRGMPKAEIEER 114
Query: 710 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 769
+A + L+ LD P R +SGGQ+QRV+M RA+ VF+FD+PLS
Sbjct: 115 VAEAARILELEPLLDRKP---------R--ELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
Query: 770 ALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 822
LDA + Q +R E+ T + VT +Q+ ++ DR+++++ G+ ++ GT
Sbjct: 164 NLDAKLRVQ-----MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 48/212 (22%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 1307
+L G+S I S I+G +G GKS+ L L R+ ELE GR+ +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 1308 GLMDLRKILGIIPQSPVLFSGTV---------------RFNLDPFSEHS--DADLWEALE 1350
L LR+ + ++ P LF +V + +D E + DADLW+
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD--- 138
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--- 1407
+K I +++L L S GQ+Q L ++RAL + K+L++DE +D
Sbjct: 139 --EIKHKIHKSALDL-----------SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 1408 -VRTDALIQK-TIREEFKSCTMLIIAHRLNTI 1437
++ ++LIQ +R E TM+I++H L+ +
Sbjct: 186 SMKVESLIQSLRLRSEL---TMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 1317
+SFT+ + I+G G+GKS++ L ++E G ILI+ + FG R K +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIR 90
Query: 1318 IIPQSPVLFSGTVRFN--------LD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 1368
+I Q P N LD P ++D + + ++ + + +R L L
Sbjct: 91 MIFQDP-----NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQ--IFETLRMVGL-LPDH 142
Query: 1369 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCT 1426
+ + GQ+Q ++L+RAL+ R KI++ DEA A++D +R+ + +E + +
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 1427 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK-MVQS 1474
+ + + I D++L++ G V+E + ++L++ +K +++S
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIES 252
|
Length = 267 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 35/243 (14%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGT----------V 681
L N++L +P G + ++G +G GK++LI + L E P + S ++ G
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELT 78
Query: 682 AYVPQVSWIF-------NATVRDNILFGSAFEPARYEKA-IDVTSLQHDLDLLPGGDVTE 733
Q+ IF + TV N+ + ++ VT L L L+ GD +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTEL---LALVGLGDKHD 135
Query: 734 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGK 791
N+SGGQKQRV++ARA+ SN V + D+ SALD + + + + I L G
Sbjct: 136 --SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GL 192
Query: 792 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKM---EE 845
T +L+T+++ + ++ D + ++ G + E+GT ++ ++ L QK + + + E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIPED 252
Query: 846 YVE 848
Y E
Sbjct: 253 YQE 255
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 29/190 (15%)
Query: 629 ERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV------ 676
P +L +N G ++A++G G GK++L+ + G L P S D +
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 677 ---IRGTVAYVPQ--VSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPG 728
R V V Q +F A V ++ FG A E+ + + L
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR--------EALTA 114
Query: 729 GDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 787
+ + ER + +SGG+K+RV++A AV DV + D+P + LD Q+ R
Sbjct: 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 788 LSGKTRVLVT 797
G T V+ T
Sbjct: 175 AEGMTVVIST 184
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 636 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQV 687
I+ + G + ++G G GKT+ I +LG + P S R + Y+P+
Sbjct: 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78
Query: 688 SWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGG 744
++ V D ++ + E + L+L +E + V +S G
Sbjct: 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL------SEYANKRVEELSKG 132
Query: 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHF 802
+Q+V AV + ++ I D+P S LD V ++ IR EL +GKT +L T+Q+
Sbjct: 133 NQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIR-ELARAGKTVILSTHQMEL 190
Query: 803 LSQV-DRIILVHEG 815
+ ++ DR++L+++G
Sbjct: 191 VEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 36/229 (15%)
Query: 1258 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--M 1310
++ + ++G +G GK++ L + R+ +L GRIL+DG DI + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-------LWEALERAHLKDAIRRNSL 1363
+R+ +G++ Q P +PF S D L +R HL + R+
Sbjct: 82 AMRRRVGMVFQKP-----------NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLR 130
Query: 1364 G------LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
G + ++ S GQ+Q L ++RAL +IL++DE T+A+D + A I+
Sbjct: 131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 1418 IREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSN 1463
+ + K T++I+ H ++ + D L+ G ++E+ ++L +N
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAARVSDTTSFFLV--GDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI----DGFDIAKFG- 1308
PVL +S T+ + V + G +GAGKS++L +L+ + GRIL+ D+A+
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 1309 --LMDLRK--------ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358
++++R+ L +IP+ + +P E A RA ++ +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPLLERGVPRE-AARARA--RELL 133
Query: 1359 RRNSLGLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
R L + ++ FS G++Q ++++R + IL+LDE TA++D ++ +
Sbjct: 134 AR--LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 1418 IREEFKS-CTMLIIAH 1432
I E ++ I H
Sbjct: 192 IAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 45/235 (19%)
Query: 604 PNPP-LTSGLPAI--SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
N L G P + ++ Y ER L ++L IP G VA+VG +G GK++L+
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL 55
Query: 661 SAMLG-ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR---YEKAIDV 716
+ G E P A ++ GT A R++ F+ AR ++K ID
Sbjct: 56 RLLAGLETP---SAGELLAGTAPL---------AEAREDTRL--MFQDARLLPWKKVIDN 101
Query: 717 TSL-------QHDLDLLPG-GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 768
L L L G E +SGGQKQRV++ARA+ + + D+PL
Sbjct: 102 VGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161
Query: 769 SALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQ----VDRIILVHEGMV 817
ALDA + R I + G T +LVT H +S+ DR++L+ EG +
Sbjct: 162 GALDA-LTRIEMQDLIESLWQQHGFTVLLVT---HDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 1307
+L ++ IP + ++G +G GKS+ + TL R+ +L G I +DG DI
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFNL------------DPFSEHSDADLWEALERAHLK 1355
+++LRK +G++ Q P F ++ N+ D E + L A +K
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
D + +++LGL S GQ+Q L ++R + +++++DE +A+D + I+
Sbjct: 138 DKLDKSALGL-----------SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 1416 KTIREEFKSCTMLIIAHRL 1434
I + + T++I+ H +
Sbjct: 187 DLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315
L+ LS + P + I+G GAGK++M++ + + G +L G D+ + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG---LPEHQI 74
Query: 1316 --LGIIP--QSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLG 1364
GI Q P +F TV NL+ + D ++ +L L + ++G
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASL-FFRLSAEEKDRIEEVLETIG 132
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT---IREE 1421
L + S GQ+Q L + L++ K+L+LDE A + TD +KT ++
Sbjct: 133 LADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSL 189
Query: 1422 FKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNE 1464
+++++ H + + I ++ +L G VL + +++ ++
Sbjct: 190 AGKHSVVVVEHDMEFVRSIAD-KVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 46/185 (24%), Positives = 101/185 (54%), Gaps = 20/185 (10%)
Query: 1263 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 1315
IP ++G +G GKS++L +L R+ +L +GR+L DG D+ + +++R+
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 1316 LGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1369
+G++ Q P F ++ N+ + ++ D + +L +A + D + ++
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-------KL 148
Query: 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1429
+E+G + S GQ+Q L ++R + +++++DE +A+D + I++T+ E K+ T++I
Sbjct: 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208
Query: 1430 IAHRL 1434
+ H +
Sbjct: 209 VTHNM 213
|
Length = 269 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 1257 HGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFGLMDL 1312
L+ ++ + + +VG +G+GKS ++L L + G IL+DG + L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL--PLSIR 60
Query: 1313 RKILGIIPQSPV-----LFS------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1361
+ + I Q+P LF+ T+R +L S+ + A + EALE L D
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLR-SLGKLSKQARALILEALEAVGLPDPEEV- 118
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 1420
L + S G Q + ++ ALL L+ DE T +DV A + K +RE
Sbjct: 119 ---LKKYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 1421 -EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
+ +L+I H L + D + ++D GR++E T +E+ N ++ + S
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 636 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQ-----VSW 689
++ + G + ++G G GKT+ + + G L P A + G V P + +
Sbjct: 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGF 82
Query: 690 IFNA-------TVRDNILF--------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
+ ++ T R+N+ + G AR E+ D ++ LD
Sbjct: 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELT-ARLEELADRLGMEELLD---------- 131
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 792
R S G +Q+V++ARA+ + V + D+P + LD R + + R +R GK
Sbjct: 132 -RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKC 188
Query: 793 RVLVTNQLHFLSQV----DRIILVHEGMVKEEG 821
+ T H + +V DR++++H G V EG
Sbjct: 189 ILFST---HIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 614 AISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
+ ++ F++ DSK +P L +I+ IP GS A++G G GK+++ + G L P +
Sbjct: 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 673 ASAVI---------------RGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID 715
++ I R V V Q + ATV D++ FG + I
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122
Query: 716 VTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
+ D+L + + I N+SGGQKQRV++A + + I D+ S LD
Sbjct: 123 IVR-----DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 775 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 832
Q+ R ++ + + T + +T+ + + D+++++ +G + +G+ ++ + E+
Sbjct: 178 GKEQILKLIRKLKKK-NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
Query: 833 FQKL 836
+++
Sbjct: 237 LKEI 240
|
Length = 282 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 37/221 (16%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 678
+ +LD+ G + I+G +G GK++L+ + + P + + R
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 679 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 730
++ V Q + + TV +N+ FG A R +A+++ L+ D P
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-- 163
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 789
+SGG +QRV +ARA+ ++ D+ + D+ SALD + ++ D + +
Sbjct: 164 ---------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 790 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
KT V +T+ L L DRI ++ +G + + GT E++ N
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 51/236 (21%)
Query: 605 NPPLTSGLPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----- 658
+P +SG I R+ F D +A L ++++DIP + A++G +G GK++
Sbjct: 30 DPAASSGETVIEARDLNVFYGDEQA----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85
Query: 659 -----LISA--MLGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFG-- 702
LI A + GEL V DA +R + V Q F ++ DN+ +G
Sbjct: 86 NRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145
Query: 703 ----SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754
R E+++ +L + LD G+++SGGQ+QR+ +ARA
Sbjct: 146 IQGYDGDIDERVEESLRRAALWDEVKDQLD-----------SSGLDLSGGQQQRLCIARA 194
Query: 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 809
+ + +V + D+P SALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 195 IAPDPEVILMDEPASALDPVATSKIED--LIEELAEEYTVVIVT---HNMQQAARI 245
|
Length = 285 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-10
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
VL G+ FT+ + ++G GAGKS+++ + IV + G + I G A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 1314 KILGI--IPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1369
+ LGI +PQ P+LF +V+ N L + + +++ A L LD+
Sbjct: 85 Q-LGIYLVPQEPLLFPNLSVKENILFGLPKRQAS-----MQKMKQLLAALGCQLDLDSSA 138
Query: 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIRE-EFKSCTM 1427
+ V RQ++ + R L+R S+IL+LDE TA++ T+ L + IRE + +
Sbjct: 139 G----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGI 193
Query: 1428 LIIAHRLNTIID-CDRILLLDSGRV 1451
+ I+H+L I DRI ++ G +
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 45/225 (20%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
V+ +SFT+ P + +G+VG +G+GKS+ L R++ +G I DG + + R+
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL---NRRQ 356
Query: 1315 ILGIIPQSPVLFSGTVRFNLDPFSE-----HSDADLWEALE--RAHLKDAIRR------- 1360
+L + + V+F DP S + + E L + L A R
Sbjct: 357 LLPVRHRIQVVFQ-------DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 1361 NSLGLDAQV-----SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
+GLD + +E FS GQRQ ++++RAL+ + +++LDE T+++D +T +Q
Sbjct: 410 EEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLD-KT---VQ 461
Query: 1416 KTIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453
I KS L I+H L+ + C ++++L G V+E
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 33/249 (13%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VEL 1292
+I+ V R + + V++ +S I + + +VG +G+GKS ++ R+ V
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 1293 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSEHS-DADLWE 1347
G I G + LR + G +I Q P++ +L+P H+ + L+E
Sbjct: 67 PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL--HTLEKQLYE 117
Query: 1348 --ALERAHLKDAIRRNSLG-LD--------AQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396
+L R ++A R L LD ++++ S G+RQ + ++ ALL R ++
Sbjct: 118 VLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPEL 177
Query: 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLE 1453
L+ DE T A+DV A I + +RE + M L I H L+ + DR+ ++ +GR +E
Sbjct: 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237
Query: 1454 YDTPEELLS 1462
+ L S
Sbjct: 238 QNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 1307
VL ++ P I+G +G GKS++L L R+ ++ G +L+D +I
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1308 GLMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALER----AHLKDAIR 1359
+++LRK +G++ Q P F + V F + + L E +E+ A L D ++
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 1360 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419
N + ++G S GQ+Q L ++R L +++++DE +A+D + I++ ++
Sbjct: 139 DN-------LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 1420 EEFKSCTMLIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLS 1462
E ++ T+ I+ H + D L +G ++EY E+ S
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 50/233 (21%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLMD-- 1311
L+ +S+T + I+G +G+GKS+++ +++ + G I + I K +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1312 -------------LRKILGIIPQSP--VLFSGTVRFNL--DPFSEHSDADLWEALERAHL 1354
LR+ + ++ Q P LF T+ ++ P + L A
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA------LGVKKSEAKK 154
Query: 1355 KDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
N +GLD E S GQ++ ++++ L + +IL+ DE TA +D + +
Sbjct: 155 LAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 1414 IQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ + I + + T+ +I H + +++ D ++++D G++L+ TP E+ +++
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 683
+++ I G ++G G GK+++ +LG + P V + + R +
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 684 VPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 741
VPQ + TVR+N+L FG F + E + SL L DV R +
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-----RVALL 136
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQL 800
SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GKT +L T
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTT--- 192
Query: 801 HFLSQVDRI 809
HF+ + +R+
Sbjct: 193 HFMEEAERL 201
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 5e-10
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAVIRGTV 681
+++L + G + A++G G GK++L+ + G P + IR +
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81
Query: 682 AYVPQ-VSWIFNATVRDNILFGSA------FEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
V Q + TV +NI+ G + + I S ++ L + P V ++
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADL 141
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGELSGKTR 793
S G++QRV + +A+Y + + I D+P + L ++F+ R GKT
Sbjct: 142 -------SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA-DELFEILRRLAAEGKTI 193
Query: 794 VLVTNQLH 801
+ +T++L
Sbjct: 194 IFITHKLK 201
|
Length = 501 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 1239 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295
I F+ V RY+ + P L+ ++ +IP V I+G TG+GKS++L L +++ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1296 RILIDGFDIAKFG-----LMDLRKILGIIPQSP--VLFSGTVR----FNLDPF--SEHSD 1342
+ I G + G L LRK +GI+ Q P LF TV F F SE
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE-- 119
Query: 1343 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDE 1401
+A ++A ++ I +GL ++ S GQ + ++++ L ++LVLDE
Sbjct: 120 ----DAKQKA--REMIEL--VGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 1402 ATAAVDVRTDALIQKTIREEF------KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1454
TA +D + +K + E F K T +++ H + D+I+++ G V
Sbjct: 172 PTAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227
Query: 1455 DTPEELLSN 1463
TP E+ ++
Sbjct: 228 GTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFG-- 1308
L+ ++ +IP + ++G +G GKS++L R+ +L G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 1351
++ LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD---- 137
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+KD + ++L L S GQ+Q L ++R L +++++DE +A+D
Sbjct: 138 -EVKDRLHDSALSL-----------SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
A I+ I + K T++I+ H + + D + L G+++E+D ++ N
Sbjct: 186 AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------- 679
L ++L I G +V ++G G GKT+L+ + G+ P + V G
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMR 79
Query: 680 -TVAYVPQVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 736
VA VP+ +F+ TV +N+ G F E ++++ I +L P I +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRI-Q 133
Query: 737 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 796
R +SGG++Q +++ RA+ S + + D+P L + +Q+FD + G T LV
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 797 -TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
N L DR ++ G V E T + L N
Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-10
Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 34/279 (12%)
Query: 1171 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLVIESNRP 1229
A +G L+ ++T L R+ +L L+ V+ GN+ E E R
Sbjct: 378 KAADALGRLMLAGRDMTRLAGFTARVDTLL-QVLDDVKS-GNFKRPRVEEIESGREGGRN 435
Query: 1230 PPGWPSSGS-------IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 1282
P G IKFE++ L P ++ LSF +P + + I G G GKSS+
Sbjct: 436 SNLVPGRGIVEYQDNGIKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSL 494
Query: 1283 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DP 1336
L + + GR+ + L +PQ P + GT+R + +
Sbjct: 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543
Query: 1337 FSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394
SD DL + L+ L + R G A V + + S G++Q ++++R +
Sbjct: 544 MKRRGLSDKDLEQILDNVQLTHILERE-GGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 1395 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1433
+ +LDE T+AV V + + + RE T+ ++HR
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 7e-10
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 24/221 (10%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
V++ LSFTI + G++G GAGKS++ L ++ +RG+I + G + + R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL-ARV 77
Query: 1315 ILGIIPQSPVL-FSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVS 1370
+G++PQ L TVR NL F + S ++ + L + R S D +V+
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFARLESKA-DVRVA 134
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLI 1429
S G ++ L+L+RAL+ ++L+LDE T +D LI + +R + T+L+
Sbjct: 135 L----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190
Query: 1430 IAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
H RL CDR+ +L+SGR + P L+ +
Sbjct: 191 TTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 7e-10
Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 59/252 (23%)
Query: 636 INLDIPVGSLVAIVGGTGEGKTSLISAM----LGELPPVSDASAV-------------IR 678
++L+I G +VA++G +G GK++L+ + G+ S + IR
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 679 GTVAYVPQVSWIFNA----TVRDNILFG------------SAFEPARYEKAIDVTSLQHD 722
+ A + FN +V +N+L G S F + ++A+
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA------ 136
Query: 723 LDLLPGGDVTEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
+T +G +R +SGGQ+QRV++ARA+ + V + D+P+++LD
Sbjct: 137 --------LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 777 RQVFD--RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELF 833
R V D R I + G T V+ +Q+ + L +RI+ + +G V +G+ + N E F
Sbjct: 189 RIVMDTLRDI-NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN--ERF 245
Query: 834 QKLMENAGKMEE 845
L + ++EE
Sbjct: 246 DHLYRSINRVEE 257
|
Length = 262 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
++ +S T+P + G++G GAGKS++L + I+ G I+ DG + DL K
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLHK 71
Query: 1315 ILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGL 1365
I G + +SP L+ T R NL P S + E L L + ++ +
Sbjct: 72 I-GSLIESPPLYENLTARENLKVHTTLLGLPDSR-----IDEVLNIVDLTNTGKKKA--- 122
Query: 1366 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
+ FS+G +Q L ++ ALL K+L+LDE T +D
Sbjct: 123 --------KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLM 1310
L +S ++ + V ++G +G GK+ TL RI+ G I G DI + L
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKT----TLLRIIAGLERQTAGTIYQGGRDITR--LP 72
Query: 1311 DLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAH-LKDAIRRNSLGLDAQ 1368
++ GI+ QS LF TV N+ ++ E ER L D + GL
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGS 127
Query: 1369 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----- 1423
+ S GQ+Q ++L+RAL +L+LDE +A+ DA +++ +R E +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL----DARVREHLRTEIRQLQRR 183
Query: 1424 -SCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
T +++ H + + DRI++++ G + + TP+E+ + + F
Sbjct: 184 LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 9e-10
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DAS 674
R L +++L + G +VAI+G G GK++L+ A+ GEL P S
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 675 AVIRGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
A R A +PQ S + F TV + + G A P +A D + L + D+
Sbjct: 75 ARRR---AVLPQHSSLSFPFTVEEVVAMGRA--PHGLSRAEDDALVAAALAQV---DLAH 126
Query: 734 IGERGV-NISGGQKQRVSMARA---VYSNSD---VFIFDDPLSALD-AH---VGRQVFDR 782
+ R +SGG++QRV +AR ++ + D+P SALD AH V R
Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186
Query: 783 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 822
L+ V+V LH L+ DRI+L+H+G + +GT
Sbjct: 187 AHERGLA----VIVV--LHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 9e-10
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 34/201 (16%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--------------VSDA--- 673
L++++L IP ++A +G +G GK++L+ + +L P + D+
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 674 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
S +R V V Q F ++ +NI AF P ++ L D L E
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENI----AFAPRANGYKGNLDELVED-SLRRAAIWEE 150
Query: 734 IG----ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 789
+ E+G +SGGQ+QR+ +ARA+ DV + D+P SALD RQV + C+ EL
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL--ELK 208
Query: 790 GK-TRVLVTNQLHFLSQVDRI 809
+ T ++VT H + Q R+
Sbjct: 209 EQYTIIMVT---HNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-09
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 31/216 (14%)
Query: 637 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDAS--AVIRGT 680
+L I G + I+G +G GK++++ + + P +SDA V R
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 681 VAYVPQ-VSWIFNATVRDNILFGSAFE--PA--RYEKAIDVTSLQHDLDLLPGGDVTEIG 735
+A V Q + + + TV DN FG A R EKA+D Q L+ E+
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYPDEL- 165
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRV 794
SGG +QRV +ARA+ N D+ + D+ SALD + ++ D ++ + +T V
Sbjct: 166 ------SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 795 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+++ L ++ DRI ++ G V + GT +++ NN
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+ +SF + + VGI G G G+S ++ + + + GRIL++G D+ R
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 1314 KILGI--IPQSP-----VLFSGTVRFNL-------DPFSEHSDADLWEALERAHLKDAIR 1359
+ LG+ +P+ VL ++ NL PFS D A+ R ++ I
Sbjct: 332 RRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLD-RRAI-RKFARELIE 388
Query: 1360 RNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
+ DA + S G +Q L L+R L RR +L+ + T +DV I +
Sbjct: 389 EFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444
Query: 1417 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL-----EYDTPEEL 1460
+ E + +L+I+ L+ I++ DRI ++ GR++ E T EE+
Sbjct: 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEI 495
|
Length = 501 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 47/228 (20%)
Query: 612 LPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGEL 667
P I I N + + KA + N+ + I + AI+G +G GKT+L I+ M +
Sbjct: 1 EPIIEIENFSAYYGEKKAVK----NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI 56
Query: 668 P-----------------PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR- 709
P P D + R V V Q F ++ DN+ FG +
Sbjct: 57 PGFRVEGKIYFKGQDIYDPQLDVT-EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKS 115
Query: 710 -------YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 762
E+++ +L ++ +E+ + G +SGGQ+QR+ +ARA+ +V
Sbjct: 116 KHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVI 168
Query: 763 IFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 809
+ D+P SALD + Q ++ + ELS T V+VT H + Q RI
Sbjct: 169 LLDEPTSALDP-IATQRIEKLLE-ELSENYTIVIVT---HNIGQAIRI 211
|
Length = 250 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP----------PVSDASAVIRGTVAY 683
++ + G ++G G GKT+ + +LG P PV + R V
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 684 VPQVSWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 741
VPQ + + TVR+N+L FG F + V L L D ++GE +
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGE----L 139
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQL 800
SGG K+R+++ARA+ ++ DV + D+P + LD +++R +R L GKT +L T
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTT--- 195
Query: 801 HFLSQVDRIILVHEGMVKEEG 821
HF+ + +R L V EEG
Sbjct: 196 HFMEEAER--LCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 71/326 (21%), Positives = 122/326 (37%), Gaps = 59/326 (18%)
Query: 538 TVVSFGMFTLLGGDLTPARAFTSL-------SLFAVLRF--PLFMLPNMITQVVNANVSL 588
F L+G L A F S+ + A+L PL ML + + + A ++
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301
Query: 589 KRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLN------------ 635
+R+ +F E+ P P S + + S DS + +N
Sbjct: 302 QRLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358
Query: 636 --INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQVS 688
I+L I G +V IVG G GK++L G P D +AV +
Sbjct: 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD-- 416
Query: 689 WIFNATVRDNILFGSAFEPARYEKA--------IDVTSLQHDLDLLPGGDVTEIGERGVN 740
+F+A D LF P E A + + + + GG T
Sbjct: 417 -LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL------SGKTRV 794
+S GQ++R+++ A + + +FD+ + D F R EL GKT +
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDP-----AFKRFFYEELLPDLKRQGKTII 525
Query: 795 LVTNQLHFLSQVDRIILVHEGMVKEE 820
++++ + D+II + G + ++
Sbjct: 526 IISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 43/227 (18%)
Query: 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP 669
+PAI + N F +D++ L ++++I + AI+G +G GK++ + + + EL
Sbjct: 5 IPAIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-- 59
Query: 670 VSDASAVIRGTVAYVPQ---------------VSWI------FNATVRDNILFGSAFEPA 708
++ + G V + Q VS + F +V DN+ +G
Sbjct: 60 --ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 709 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 766
R + ID V S D DL +I + +++SGGQ+QR+ +ARA+ V + D+
Sbjct: 118 RPKLEIDDIVESALKDADLWDEIK-HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 767 PLSALDAHVGRQV----FDRCIRGELSGKTRVLVTNQLHFLSQVDRI 809
P LD +V +R EL T V+V++ LH QV R+
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSEL---TMVIVSHNLH---QVSRL 217
|
Length = 261 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 609 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 668
T+ P + R+ + L I+ + G + A++GG G GK++L+ + G +P
Sbjct: 6 TTAPPLLCARS---ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62
Query: 669 PVSDASAVIRGTVAY---------------VPQVSWIF-NATVRDNILFGSAFEPARYEK 712
P D+ + G VPQ +F N +V++NILFG A +K
Sbjct: 63 P--DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK 120
Query: 713 AID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 771
+ +L LDL E+ +R Q V + R + +S + I D+P ++L
Sbjct: 121 MKQLLAALGCQLDLDSSAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASL 171
Query: 772 DAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
++F R IR L+ G V ++++L + Q+ DRI ++ +G + G DLS +
Sbjct: 172 TPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230
|
Length = 510 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 42/208 (20%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ------ 686
L +NL I G ++++G +G GK++L++ + G P + ++ G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVV 59
Query: 687 ------VSWIFNATVRDNILFG------SAFEPAR---YEKAIDVTSLQHDLDLLPGGDV 731
+ W+ TVR+NI + R E+ I + L D PG
Sbjct: 60 FQNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG--- 113
Query: 732 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSG 790
+SGG KQRV++ARA+ V + D+P ALDA + + ++ E
Sbjct: 114 --------QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 791 KTRVLVTNQLH---FLSQVDRIILVHEG 815
T ++VT+ + LS DR++++ G
Sbjct: 166 VTVLMVTHDVDEALLLS--DRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 1307
L +S IP + +G +G GKS++L R+ +L G I +DG +I K
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 1308 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 1350
+ +LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD--- 156
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
+KD + N+ GL S GQ+Q L ++RA+ ++L+LDE T+A+D +
Sbjct: 157 --EVKDRLHENAFGL-----------SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203
Query: 1411 DALIQKTIREEFKSCTMLIIAH 1432
I++ I E T++I+ H
Sbjct: 204 TLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 48/237 (20%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 1311
++ I P +G +G GKS++L TL R+ E+ G +L+DG D+ G+ +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 1312 LRKILGIIPQSPVLFS---------GTVRFN-------LDPFSEHS--DADLWEALERAH 1353
+R+ +G++ Q P F ++ N LD E S A+LW
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
+KD + + GL S GQ+Q L ++RA+ +L++DE +A+D +
Sbjct: 138 VKDRLDKPGGGL-----------SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186
Query: 1414 IQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDS----GRVLEYDTPEELLSN 1463
I+ I E + T++I+ H + + D L++ GR++E D E++ SN
Sbjct: 187 IEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243
|
Length = 258 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
PVL ++ I + + I G TG+GK+S+L + +E G+I G
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------- 99
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 1372
+ Q + GT++ N+ F D ++++ +A L++ I + + + E
Sbjct: 100 --ISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 1425
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE-------KEIFESCVCKLMAN 209
Query: 1426 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469
T +++ ++ + D+IL+L G Y T E L + FS
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFS 253
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 674
S ++ + ++ + G ++G G GK+++ +LG P V +
Sbjct: 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109
Query: 675 AVIRGTVAYVPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
+ R + VPQ + TVR+N+L FG F + E + SL L D
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA- 168
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 791
R ++SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GK
Sbjct: 169 ----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGK 223
Query: 792 TRVLVTNQLHFLSQVDRI 809
T +L T HF+ + +R+
Sbjct: 224 TILLTT---HFMEEAERL 238
|
Length = 340 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 44/252 (17%)
Query: 614 AISIRNGYFSW--DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 671
I + + +F + +KA L ++L IP GS A++G G GK++L+ + G P
Sbjct: 4 IIEVEDLHFRYKDGTKA----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 672 DASAV------------IRGTVAYVPQV--SWIFNATVRDNILFG------SAFE-PARY 710
V +R V V Q +F++TV D++ FG E R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 711 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
E+A+ + D P ++S GQK+RV++A + + DV + D+P++
Sbjct: 120 EEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 771 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 829
LD + + R GKT ++ T+ + ++ D++I++ EG V EG L++
Sbjct: 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD- 227
Query: 830 GELFQKLMENAG 841
+ ++E AG
Sbjct: 228 ----EDIVEQAG 235
|
Length = 274 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
L +S TI + V ++G +G GK+++LN + V RG I ++G I G
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER-- 76
Query: 1314 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR---NSLGLDAQV 1369
G++ Q+ L V N+ L+ ++ A RR + + +
Sbjct: 77 ---GVVFQNEALLPWLNVIDNVA-----------FGLQLRGIEKAQRREIAHQMLALVGL 122
Query: 1370 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1425
A + S G RQ + ++RAL ++L+LDE A+D T +Q+ + + ++
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 1426 --TMLIIAHRLN-TIIDCDRILLLDS--GRVLEYDTP 1457
+L+I H + + R+++L GRV+E
Sbjct: 183 GKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219
|
Length = 259 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 48/178 (26%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI-------- 677
E L NINLDI + AI+G +G GK++ I M+ +P V ++
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 678 --------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 729
R V V Q F ++ DN+ +G + +K +D
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD-------------- 141
Query: 730 DVTEIGERGVNI---------------SGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
++ E RG I SGGQ+QR+ +AR + DV + D+P SALD
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 51/252 (20%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 1307
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 1308 GLMDLRKILGIIPQS----PVLFSGTVRFNL----------DPFSEHSDADLWEALERAH 1353
+ +LR+ +G++ Q P L TV+ NL + A+ + LER
Sbjct: 76 AIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAE--KLLERLR 130
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
LK R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A
Sbjct: 131 LKPYADRFPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 1414 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
I IRE ++ T +I+ H + R++ +++G ++E S F+
Sbjct: 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD--------ASCFT-- 229
Query: 1472 VQSTGAANAQYL 1483
Q A YL
Sbjct: 230 -QPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI------------ 677
L NINL IP + AI+G +G GK++ I M+ +P V +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 678 ----RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
R + V Q F ++ DN+ +G + +K + + D+ +V +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 734 -IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 791
+ + +++SGGQ+QR+ +ARA+ +N DV + D+P SALD R++ + + +L K
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL--KLKEKY 205
Query: 792 TRVLVTNQLHFLSQVDRI 809
T V+VT H + Q R+
Sbjct: 206 TIVIVT---HNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 1308
L G+ ++ ++G +G GKS+ L TL R+ +L G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 1362
++ LRK +G++ Q P F ++ N L + + D EA+E + + AI
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD--EAVETSLKQAAIWDE- 137
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1422
+ + E+ + S GQ+Q + ++R L + +++LDE T+A+D + I+ + E
Sbjct: 138 --VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 1423 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
T++++ H ++ D+ +G ++E+ +++ N
Sbjct: 196 DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237
|
Length = 252 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 42/206 (20%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
VL +S + P + ++G GAGKS+++ + +V + G I +G LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR- 68
Query: 1315 ILGIIPQS----PVLFSGTVRF-NLDPFSEHSDADLWEALER---AHLKDAIRRNSLGLD 1366
+G +PQ L RF L P ++ D+ AL+R HL DA
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTK--KEDILPALKRVQAGHLIDA--------P 117
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 1422
Q GE QR LL+ RALL R ++LVLDE T VDV LI + +R E
Sbjct: 118 MQKLSGGET----QRVLLA--RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL 170
Query: 1423 KSCTMLIIAHRLNTII-DCDRILLLD 1447
C +L+++H L+ ++ D +L L+
Sbjct: 171 -DCAVLMVSHDLHLVMAKTDEVLCLN 195
|
Length = 251 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA------------M 663
S++N + SK L +INLDI + A +G +G GK++ + +
Sbjct: 7 SVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV 63
Query: 664 LGEL-----PPVSDASAVI--RGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEKAID 715
GEL S + V+ R V V Q F ++ DN+ +G A+ +K +D
Sbjct: 64 KGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD 123
Query: 716 VTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 771
+ L G E+G+R +SGGQ+QR+ +ARA+ + + D+P SAL
Sbjct: 124 EIV---EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 772 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 827
D V V + I+ T ++VT H + Q DR+ G + E T +++
Sbjct: 181 DP-VATNVIENLIQELKKNFTIIVVT---HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236
Query: 828 NN 829
N
Sbjct: 237 KN 238
|
Length = 251 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 1308
L ++ +IP ++ I+G +G GKS+ + TL ++++ G + +G +I K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1309 LMDLRKILGII-------PQS--------PVLFSGTVRFNLDPFSEHS--DADLWEALER 1351
L++LRK +G++ PQS P + + L E S D LW+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD---- 143
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+KD + +L L S GQ+Q L ++RAL +L++DE T+A+D +
Sbjct: 144 -EVKDRLHTQALSL-----------SGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
I++ I + + T++I+ H + D+ G ++E + ++ SN
Sbjct: 192 RKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+FE V Y L G++F + P + + G +GAGKS++L + I G+I
Sbjct: 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 1299 IDGFDIAKFGLMD---LRKILGIIPQS-PVLFSGTVRFNLD-PFSEHSDADLWEALERAH 1353
G DI + + LR+ +G+I Q +L TV N+ P + A
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL----------IIAGAS 110
Query: 1354 LKDAIRRNSLGLD-AQVSEAGENFSV----GQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
D RR S LD + + +NF + G++Q + ++RA++ + +L+ DE T +D
Sbjct: 111 GDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD- 169
Query: 1409 RTDALIQKTIR--EEFK--SCTMLIIAHRLNTIIDCD-RILLLDSGRV 1451
DAL + +R EEF T+L+ H + I R+L L G +
Sbjct: 170 --DALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDASAV 676
+ L NI+ + G I G +G GK+ SLIS G L +S
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 677 I-RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTE 733
I R V+Y Q +F TV DN++F + D DL+ LP
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALP----DT 129
Query: 734 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
I + + +SGG+KQR+S+ R + V + D+ SALD V +
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178
|
Length = 225 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQV 687
R L +++ +I G + I G +G GK+SL A L L P + + ++PQ
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRA-LAGLWPWGSGRIGMPEGEDLLFLPQR 72
Query: 688 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747
++ T+R+ +++ P DV +SGG++Q
Sbjct: 73 PYLPLGTLREQLIY-------------------------PWDDV---------LSGGEQQ 98
Query: 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 807
R++ AR + D+ SALD +++ + T + V ++ D
Sbjct: 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KELGI--TVISVGHRPSLWKFHD 155
Query: 808 RII-LVHEG 815
R++ L EG
Sbjct: 156 RVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 44/244 (18%)
Query: 621 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------- 669
Y S + E+ L ++NL++ G + I+G G GK+++ M L P
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 670 VSDASAV--IRGTVAYVPQV--SWIFNATVRDNILFGS---AFEP----ARYEKAIDVTS 718
SD + IR V Q + I V +++ FG P R ++++
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG 133
Query: 719 LQ----HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
+ H LL SGGQKQRV++A + + IFD+P + LD
Sbjct: 134 MYEYRRHAPHLL---------------SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 775 VGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 832
R+V + I+ + G T +L+T+ + + DRII++ G V EGT +++ E+
Sbjct: 179 GRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEM 237
Query: 833 FQKL 836
+K+
Sbjct: 238 MKKI 241
|
Length = 280 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 24/235 (10%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELER---GRILIDGFDIAKF--- 1307
VL+ +S ++ + V ++GR+G GKS TL R+ V LE G + G +AK
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKS----TLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 1308 GLMDLRKILGIIPQ---SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 1364
R+ + ++ Q S V TVR + H L +A ER + R ++
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKA-ERLARASEMLR-AVD 139
Query: 1365 LDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA-LIQ--KTIRE 1420
LD V + S GQ Q + L+RAL K+L+LDEA + +D+ A +I+ K +++
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 1421 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
+F + L I H L + C R++++D+G+++E + L+ S +++Q+
Sbjct: 200 QFGT-ACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFS-SPAGRVLQN 252
|
Length = 268 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 5e-09
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
PVL +SF + + + G TG+GKSS+L + +E G+I G
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------- 488
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 1372
+ PQ+ + GT++ N+ F D + ++ +A L++ I + E
Sbjct: 489 --ISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 1425
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE-------KEIFESCLCKLMSN 598
Query: 1426 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472
T +++ +L + D+ILLL G Y T E L + FS ++
Sbjct: 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-09
Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 56/269 (20%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGR 1296
I+ +++ ++ + VL +SFTI + +GI+GR+GAGKS +++ L + + E GR
Sbjct: 1 IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1297 IL---------------------------------IDGFDIAKFGLMDLRKILGIIPQSP 1323
I+ +D ++++ +RK + I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1324 VLFSGTVRFNLDPFSEHSDADLWEALERAHL--KDAIRR-----NSLGLDAQVSEAGENF 1376
G LD ++ EALE K+A+ R + L +++ +
Sbjct: 119 FALYGDDTV-LD--------NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169
Query: 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRL 1434
S G++Q + L+R L + + + DE T +D +T L+ + E K+ +M++ +H
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Query: 1435 NTIID-CDRILLLDSGRVLEYDTPEELLS 1462
I D D+ + L++G + E TP+E+++
Sbjct: 230 EVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 604 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 662
S IS++N S+ +A + N+ DIP G + A++G +G GK++++ +
Sbjct: 3 KTNKKISKNIIISLQNVTISYGTFEAVK----NVFCDIPRGKVTALIGPSGCGKSTVLRS 58
Query: 663 ---MLGELPPVSDASAVI-RGTVAYVPQVSWI---------------FNATVRDNILFGS 703
M + S V+ GT Y P+V + F ++ +NI FG
Sbjct: 59 LNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG- 117
Query: 704 AFEPARYEKAIDVTSLQHDLDLLPGGDVTE----------IGERGVNISGGQKQRVSMAR 753
AR + D+D L + + + E G ++SGGQ+QR+ +AR
Sbjct: 118 ----AR------INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167
Query: 754 AVYSNSDVFIFDDPLSALD 772
+ +V + D+P SALD
Sbjct: 168 TIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1258 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 1314
G++ + + +G+VG +G GKS+ + +V+ G + G D+ +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 1315 ILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLG---LD 1366
+ +I Q P L S R + +P + L R +KD ++ L L
Sbjct: 99 DIQMIFQDP-LASLNPRMTIGEIIAEPLRTY-----HPKLSRQEVKDRVKAMMLKVGLLP 152
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 1422
++ FS GQ Q + ++RAL+ K+++ DE +A+DV A L+Q+ RE
Sbjct: 153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG 212
Query: 1423 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
S ++ IAH L + I DR+L++ G +E T +E+ N ++K + S
Sbjct: 213 LS--LIFIAHDLAVVKHIS-DRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263
|
Length = 331 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 1313
L G++ TI + + ++G +G GKS++LN LI G G +++ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLN-------------LISGLAQPTSGGVILEGK 47
Query: 1314 KILGIIPQSPVLFSG-------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
+I P V+F TVR N+ + DL ++ RA +++ I +GL
Sbjct: 48 QITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHI--ALVGLT 105
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 1424
+ S G +Q ++++RAL R K+L+LDE A+D T +Q+ + + E
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1425 CTMLIIAHRLN-TIIDCDRILLLDS------GRVLEYDTP 1457
T+L++ H ++ ++ DR+++L + G++LE P
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFP 205
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-09
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 671
+ +R F+ + R NI+L +P G + AI+G +G GKT+L+ + G++ P
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 672 -----DASAVIRGTVAYV-PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTS 718
+ A+ R + V ++S +F + V DN+ + E + + ++
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-PLREHTQLPAPLLHST 123
Query: 719 LQHDLDLLPGGDVTEIGERGV------NISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
+ L+ +G RG +SGG +R ++ARA+ D+ +FD+P D
Sbjct: 124 VMMKLE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 773 AHVGRQVFDRCIRGELS---GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSN 828
+ V + I EL+ G T V+V++ + LS D +V + + G+ + L
Sbjct: 176 P-ITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Query: 829 N 829
N
Sbjct: 234 N 234
|
Length = 269 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 6e-09
Identities = 59/262 (22%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 1239 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295
IKFE V Y+P P L + + ++G TG+GKS++L L +++ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1296 RILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEAL 1349
++ + ++ + +RK +G++ Q P LF TV ++ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPK 117
Query: 1350 ERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
E+A A + +GL + E S GQ + ++++ L ++LVLDE TA +D
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 1409 RTDALIQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN--- 1463
+ + + +S T++++ H ++ + D D + LL+ G ++ TP ++
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
Query: 1464 ---------EGSSFSKMVQSTG 1476
+ + F+ +Q TG
Sbjct: 238 LKAHELGVPKATHFADQLQKTG 259
|
Length = 288 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 6e-09
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 676
L +I+L++ GS A++G TG GK++L+ + G L P V
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 677 IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
+R V V Q S +F TV ++ FG EKA + + L+++ G E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA--EKLEMV--GLADEF 137
Query: 735 GERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 793
E+ +SGGQ +RV++A + +V + D+P + LD ++ SG+T
Sbjct: 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTV 197
Query: 794 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 826
VLVT H + V D + L+ +G + GT D+
Sbjct: 198 VLVT---HLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 6e-09
Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 74/209 (35%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I + N ++ + L +I+L I G + +VG G GK++L+ + GEL P
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE--- 54
Query: 675 AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
G V +GS + +E+
Sbjct: 55 ----GIVT------------------WGSTVKIGYFEQ---------------------- 70
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV-------FDRCIRGE 787
+SGG+K R+++A+ + N ++ + D+P + LD + + +
Sbjct: 71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE-SIEALEEALKEYPGTV--- 120
Query: 788 LSGKTRVLVTNQLHFLSQV-DRIILVHEG 815
+LV++ +FL QV +II + +G
Sbjct: 121 ------ILVSHDRYFLDQVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 7e-09
Identities = 62/248 (25%), Positives = 110/248 (44%), Gaps = 28/248 (11%)
Query: 648 IVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSWIFNA-------TV 695
++G +G GKT+L+ +L S ++ G V VP ++ +F + TV
Sbjct: 1 LLGPSGCGKTTLLR-LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 696 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARA 754
+N+ F + K L+ L + E +R +SGGQ+QRV++ARA
Sbjct: 60 EENVAF-----GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 755 VYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT-NQLHFLSQVDRIIL 811
+ + + D+PLSALD + Q+ + I+ +L G T V VT +Q ++ DRI +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAI 173
Query: 812 VHEGMVKEEGTFEDLSN--NGELFQKLMENAGKMEEYV-EEKEDGETVDNKTSKPAANGV 868
+ +G + + GT E++ + + E V E K + + + +
Sbjct: 174 MRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATVIERKSEQVVLAGVEGRRCD--I 231
Query: 869 DNDLPKEA 876
D+P E
Sbjct: 232 YTDVPVEK 239
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 7e-09
Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 1238 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
+I+F++V Y+ P +H ++ IVG+TG+GKS+++ + +++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 1295 GRILIDGFDIA-----KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWE 1347
G + +D I K+ + +RK +G++ Q P LF TV + ++ +L E
Sbjct: 62 GTVTVDDITITHKTKDKY-IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE 120
Query: 1348 ALERAH---LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
AH + R+ + S++ S GQ + +++ L I+VLDE TA
Sbjct: 121 VKNYAHRLLMDLGFSRDVM------SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 1405 AVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459
+D ++ L++ +E K T+++++H +N + D ++++ G ++ +P+E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTDENK--TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
Query: 1460 LLS 1462
L
Sbjct: 233 LFK 235
|
Length = 286 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 7e-09
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
V L+ IP I+G G GKS++L TL R++ G + +DG I + ++ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1315 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADL---WEALERAHLKDAIRRNSLGLDAQVSE 1371
+G++ Q+ L + L W + + A++ + G+ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ--ATGITHLADQ 139
Query: 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTM 1427
+ + S GQRQ ++ L + + I++LDE T +D+ L+ + RE K T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTL 197
Query: 1428 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ H LN ++ L G+++ P+E+++ E
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 7e-09
Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
+S TI + ++G +G GKS++L L + G+I++DG D++ + ++ + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPINM 95
Query: 1319 IPQSPVLFSG-TVRFNLDPFSEHSD--------ADLWEALERAHLKDAIRRNSLGLDAQV 1369
+ QS LF TV N+ F D + + E L H+++ +R L
Sbjct: 96 MFQSYALFPHMTVEQNI-AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL---- 150
Query: 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 1427
S GQRQ ++L+R+L +R K+L+LDE A+D + +Q + + E T
Sbjct: 151 -------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 1428 LIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469
+++ H + + RI +++ G+ ++ PEE+ + + +S
Sbjct: 204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 8e-09
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 636 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQVSWIFNA 693
++ ++P G+ + I G G GK+SL +LGEL PV +G + YVPQ ++
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 694 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN----------ISG 743
T+RD I++ + E + + + L+ LD + +T I ER +SG
Sbjct: 530 TLRDQIIYPDSSEDMK-RRGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLSG 585
Query: 744 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
G+KQR++MAR Y I D+ SA+ V ++ C
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 42/247 (17%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 676
E L ++NL I GS A +G TG GK++++ + G P + V
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 677 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 730
IR V V Q S +F TV ++ FG E+A +L + L G
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA---EALAREKLALVGIS 135
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 790
+ + +SGGQ +RV++A + + + D+P + LD +++ + SG
Sbjct: 136 ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG 195
Query: 791 KTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEY 846
T VLVT H + V D + ++ +G + G +D +FQ + ++
Sbjct: 196 MTIVLVT---HLMDDVANYADFVYVLEKGKLVLSGKPKD------IFQDV--------DF 238
Query: 847 VEEKEDG 853
+EEK+ G
Sbjct: 239 LEEKQLG 245
|
Length = 280 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 680
+++L++ G +V ++G G GKT+L + + G P S + + RG
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLG 80
Query: 681 VAYVPQVSWIF-NATVRDNIL--------FGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 731
+A Q++ +F TV +N+ R K + + +LL +
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVGL 139
Query: 732 TE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--EL 788
E N+S GQ++R+ +ARA+ + + + D+P + L+ ++ + IR +
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-IRELRDR 198
Query: 789 SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
G T +L+ + + + + DRI++++ G V EGT E++ NN
Sbjct: 199 GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
|
Length = 250 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-08
Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 677 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLLPGGDVTE 733
+R + V Q +FN ++ +NI FG E A E +A ++ ++ LP T
Sbjct: 1294 LRNLFSIVSQEPMLFNMSIYENIKFGK--EDATREDVKRACKFAAIDEFIESLPNKYDTN 1351
Query: 734 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGK 791
+G G ++SGGQKQR+++ARA+ + + D+ S+LD++ ++ ++ I + + K
Sbjct: 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN-SEKLIEKTIVDIKDKADK 1410
Query: 792 TRVLVTNQLHFLSQVDRIILVHE-----GMVKEEGTFEDL 826
T + + +++ + + D+I++ + V+ GT E+L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450
|
Length = 1466 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 33/235 (14%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 1305
VL G+S D + I+G +G+GKS+ L + + + G I ++G +I
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 1306 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERA-HLK 1355
K L LR LG++ Q L+S TV N+ H S A EA+ERA
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA---EAIERAEKYL 137
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
+ G+ + + S GQ+Q ++++RAL ++++ DE T+A+D +
Sbjct: 138 AKV-----GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 1416 KTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466
K ++ EE + TM+++ H + D ++ L G++ E PE++ N S
Sbjct: 193 KVMQDLAEEGR--TMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 37/223 (16%)
Query: 643 GSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA---VIR-----GTV 681
G +AI+G G GK++L + G + P S D S IR
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 682 AYVP--QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 739
+ P ++ I + +R N R ++ + + + LLP D
Sbjct: 99 SLNPRLRIGQILDFPLRLNT---DLEPEQRRKQIFETLRM---VGLLP--DHANYYPH-- 148
Query: 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTN 798
++ GQKQRV++ARA+ + I D+ L++LD + Q+ + + E G + + VT
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 799 QLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQKLME 838
+ + + D+++++HEG V E G+ D+ S EL ++L+E
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL------------FRIVELERGRILIDGF 1302
+L LS I P ++GR GAGKS++L L R+ G + ++G
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV----TGDVTLNGE 71
Query: 1303 DIAKFGLMDLRKILGIIPQS--PVL-FSGTVRFNLDPF--------SEHSDADL-WEALE 1350
+A L ++ ++PQ+ P FS L + H D ++ W+AL
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 1351 RAHLKDAIRRN----SLGLDAQVSEAGENFSVGQRQLLSL--SRALLRRSKILVLDEATA 1404
A + R+ S G A+V A R L L + + L+LDE TA
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFA--------RVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 1405 AVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELL 1461
A+D+ + T+R + + L I H N DRI +L G ++ + P ++L
Sbjct: 184 ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
Query: 1462 SNE 1464
+
Sbjct: 244 TPA 246
|
Length = 272 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 1258 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-- 1315
++ + + V ++G GAGK+++ N L + G IL+ G I GL +I
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE--GLPG-HQIAR 79
Query: 1316 LGIIP--QSPVLF-SGTVRFNL------------------DPFSEHSDADLWEALERAHL 1354
+G++ Q LF TV NL P +++ EAL+RA
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES---EALDRA-- 134
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT---- 1410
A +GL + N + GQ++ L ++R ++ + +IL+LDE A ++ +
Sbjct: 135 --ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 1411 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
D LI + +R E T+L+I H + ++ DRI +++ G L TPEE+ +N
Sbjct: 193 DELIAE-LRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 627 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 686
ER L N+NL+I G +VA+VG +G GKT+L+ +LG RG Y P
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA--------QKGRGEEKYRPD 444
Query: 687 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG---GDVTEIGERGVN--- 740
+ V SA P YE ++ L G V + G++
Sbjct: 445 -----SGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAV 499
Query: 741 --------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS- 789
+S GQK+R +A+ + +V + D+ AH+ R R EL+
Sbjct: 500 LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE----FAAHLDELTAVRVARKISELAR 555
Query: 790 --GKTRVLVTNQLHFLSQV--DRIILVHEGMVKEE 820
G T ++VT++ + + D +ILV G V
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 42/308 (13%)
Query: 1257 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DG---FDIAKFGLMDL 1312
H S I + ++G +G+GKS++L + + + RG +L+ DG D+A L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 1313 RKI-----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1361
R++ ++P V V F L+ A E +R + +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVE--ENVAFGLE-MQGMPKA---ERRKRVDEQLEL--- 151
Query: 1362 SLGLDA-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRT---DALI- 1414
+GL + GE S G +Q + L+RA + IL++DE +A+D +RT D L+
Sbjct: 152 -VGLAQWADRKPGE-LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLE 209
Query: 1415 -QKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK-M 1471
Q +++ T++ ++H L+ + +RI +++ GR++++ TPEE++ N + +
Sbjct: 210 LQSKLKK-----TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264
Query: 1472 VQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAA-AQYALAVSLTSS 1530
V T N R L+ K+ E WL ++ A L V+ ++
Sbjct: 265 VAHTNPLNVLTARDLMRPLTTLEKVDGEWCVSKRYDTWLKTADKQVRRAAAGLPVAAWAA 324
Query: 1531 HNDLQRLE 1538
+++ LE
Sbjct: 325 EQEVESLE 332
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-08
Identities = 63/282 (22%), Positives = 108/282 (38%), Gaps = 76/282 (26%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWI 690
L NI+ I G ++ I+G +G GK+ L+ + G + P + +I VA + ++
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIY-HVALCEKCGYV 72
Query: 691 ------------------------------------------FNAT--------VRDNIL 700
T V DN+L
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 701 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVSMARAVY 756
A E YE ++ +DL+ ++ ++ R +I SGG+KQRV +AR +
Sbjct: 133 --EALEEIGYEGK---EAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLA 184
Query: 757 SNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHE 814
+F+ D+P LD + V + + SG + VL ++ + + D+ I +
Sbjct: 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLEN 244
Query: 815 GMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETV 856
G +KEEGT +++ ME E E E GE +
Sbjct: 245 GEIKEEGTPDEVVA------VFMEGV-SEVEKECEVEVGEPI 279
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 33/228 (14%)
Query: 618 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------ 671
R G +K P L N++L I G V ++G +G GK++L +LG P
Sbjct: 13 RTGGLFG-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFR 71
Query: 672 ---------DASAVIRGTVAYVPQVSW-IFNA--TVRDNILFGSAFEPARYEKAIDVTS- 718
R V V Q S N TVR I EP R+ ++D +
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG-----EPLRHLTSLDESEQ 126
Query: 719 ---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 775
+ LD++ G + + +SGGQ QR+++ARA+ + + D+ +S LD +
Sbjct: 127 KARIAELLDMV-GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL 185
Query: 776 GRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 820
+ + R ++ G + +T+ L + R+ ++ +G + EE
Sbjct: 186 QAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 36/268 (13%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQ 686
NI+ ++P G + ++G G GKT+ +LG L P S I+ + Y+P+
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79
Query: 687 VSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGG 744
++ TV D + + + E KA LQ L ++ + + +S G
Sbjct: 80 ERGLYPKMTVEDQLKYLA--ELKGMPKAEIQKKLQ---AWLERLEIVGKKTKKIKELSKG 134
Query: 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 804
+Q++ AV ++ I D+P S LD + D + G T + + H +
Sbjct: 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS---HRME 191
Query: 805 QV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN-- 858
V DR++++ +G GT ED+ + GK +E E + N
Sbjct: 192 HVEELCDRLLMLKKGQTVLYGTVEDIRR----------SFGKKRLVIESDLSLEELANIP 241
Query: 859 --KTSKPAANGVDNDLPKEASDTRKTKE 884
+G + + R+ +
Sbjct: 242 GILKITETKDGSWRIQIENETVAREIFQ 269
|
Length = 300 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 1270 GIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDIAKFGL--MDLRKILGIIPQS 1322
G +G +G GKS++L +L R+ +L +G + G D+ G+ + +R+ +G++ Q
Sbjct: 38 GFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97
Query: 1323 PVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376
P FS ++ N L+ + + AL+ A L D ++ ++ +G +
Sbjct: 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150
Query: 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1436
S GQ+Q L ++RA+ ++L+LDE +A+D +++ + E K T+ ++ H +
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210
Query: 1437 II 1438
I
Sbjct: 211 AI 212
|
Length = 261 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 1253 PPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 1310
PV L ++ T+ P + ++G GAGKS+++ L I E +G I I+ + K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 1311 DLRKI-LGIIPQS-PVLFSGTVRFNLDPFSEHSDADLW--------EALERAHLKDAIRR 1360
++ +GII Q V+ TV NL H + E RA A+
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRA----AMML 130
Query: 1361 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDAL--IQKT 1417
+GL + E N S+ +Q+L +++ L+ +K++++DE T+++ + D L I
Sbjct: 131 LRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 1418 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSG 1449
+R+E + ++ I+H+L I CDR ++ G
Sbjct: 191 LRKEGTA--IVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-08
Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 600 KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTS 658
K P P G P IS + F + P L N+N I + S +A+VG G GK++
Sbjct: 494 KFEFPTPDDRPGPPIISFSDASFGYPGG---PLLFKNLNFGIDLDSRIAMVGPNGIGKST 550
Query: 659 LISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 717
++ + GEL P S GTV +V +F+ D + S
Sbjct: 551 ILKLISGELQPSS-------GTVFRSAKVRMAVFSQHHVDGLDLSS-------------N 590
Query: 718 SLQHDLDLLPGGDVTE------IGERGVN----------ISGGQKQRVSMARAVYSNSDV 761
L + + PG V E +G GV +SGGQK RV+ A+ + +
Sbjct: 591 PLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 648
Query: 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL-VTNQLHFLS-QVDRIILVHEGMVKE 819
+ D+P + LD + I+G + + VL V++ H +S VD + +V EG V
Sbjct: 649 LLLDEPSNHLDL----DAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704
Query: 820 -EGTFED 825
GTF D
Sbjct: 705 FHGTFHD 711
|
Length = 718 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-08
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 23/229 (10%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 1312
VL G+S I + V IVG +G+GKS+++N L + + G + G D+A L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1313 --RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1369
R+ G I Q L S T N++ + ++ + + L RA + ++R LGL+ +V
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ--ELLQR--LGLEDRV 138
Query: 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA---LIQKTIREEFKSCT 1426
S GQ+Q +S++RAL+ ++++ DE T A+D + I +R+ + T
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHT 196
Query: 1427 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1475
++I+ H +R++ + G E++ N + V
Sbjct: 197 VIIVTHDPQVAAQAERVIEIRDG---------EIVRNPPAQEKVNVAGG 236
|
Length = 648 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 625 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV 684
+ K + L ++L I G +VAIVG +G GK++L+ + G P S G V +
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS-------GEVLFN 65
Query: 685 PQVSWIFNATVRD---NILFGSAFEPARYEKAIDVTSLQH-DLDLLPGG-DVTEIGERGV 739
Q ++ R N G ++ + D T+L++ + LL G V E ER
Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLIGKKSVKEAKERAY 123
Query: 740 N-----------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
+SGG++QRV++ARA+ + + + D+P LD + + +FD
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD- 182
Query: 783 CIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 819
+ EL + ++VT+ L ++DR++ + +G +
Sbjct: 183 -LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGEL----PPVSD 672
E+ L +I + IP + A++G +G GK++L+ G++ + D
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 673 ASA---VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 726
+ A +R + V Q F ++ +N+ +G + +K +D SL+
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
D + + +++SGGQ+QR+ +AR + N +V + D+P SALD
Sbjct: 138 EVKD--RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
|
Length = 253 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 32/201 (15%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--VSDASAVIRGTVAYVP--- 685
L I+LD + A++G +G GK++ + + + +L P + +RG Y P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 686 ------QVSWIFNA------TVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 730
QV +F ++ +N+++G + + +D TSL+ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ---AAIWDE 137
Query: 731 VTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 789
V + + E +++SGGQ+QRV +AR + DV + D+P SALD Q+ + + EL
Sbjct: 138 VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL--ELR 195
Query: 790 GK-TRVLVTNQLHFLSQVDRI 809
+ T +LVT H + Q RI
Sbjct: 196 DQYTIILVT---HSMHQASRI 213
|
Length = 252 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---------- 684
N +LDI G + ++G +G GK++L+ A+ G L PVS S +++ V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNG-LNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 685 -----PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
+VS +F TV +N+ FG E KA + L+L+ +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELV---GLA 155
Query: 733 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS 789
+ +R +SGG +QRV +ARA + + + + D+P SALD + Q+ D + +L
Sbjct: 156 QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLK 215
Query: 790 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDL 826
KT V V++ L L +RI ++ G + + GT E++
Sbjct: 216 -KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-08
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 1204 LNAVERVG--NYIELPSEAPLVIESNRPPPGWPSSGS---------IKFEDVVLRYRPEL 1252
L AV ++G ++ P PL I P P ++ ++V R+
Sbjct: 269 LAAVPQLGAMKGLDYPRRFPL-ISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRF---- 323
Query: 1253 PPVLHGL--------------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
P+ GL SF + P + + +VG +G+GKS+ L R+VE + G I+
Sbjct: 324 -PLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382
Query: 1299 IDGFDI---AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH-- 1353
+G I + L LR+ + I Q P +LDP D+ + E L R H
Sbjct: 383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYA-------SLDPRQTVGDS-IMEPL-RVHGL 433
Query: 1354 -LKDAIRRNSLGLDAQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
A L +V E+ FS GQRQ + ++RAL K+++ DEA +A
Sbjct: 434 LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493
Query: 1406 VDVRTDALI 1414
+DV I
Sbjct: 494 LDVSIRGQI 502
|
Length = 623 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 1308
L + IP +G +G GKS+ L L R+ ++ R G+I +DG DI +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 1309 LMDLRKILGIIPQSPVLFSGTVRFNL--DPFSE---HSDADLWE----ALERAHLKDAIR 1359
+++LR +G++ Q P F ++ N+ P S A+L E +L +A L + ++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 1360 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419
++ E G S GQ+Q L ++RA+ +++++DE +A+D A +++ I
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 1420 EEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1463
E ++ T++I+ H + R G ++E E++ +N
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 25/212 (11%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIR----- 678
E+ L ++L+I G V ++G G GK++L++A+ G+L P S D V +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 679 --GTVAYV---PQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQHDLDLLP 727
+A V P T+ +N+ A E+ S + L L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLG 135
Query: 728 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 787
G + +R +SGGQ+Q +S+ A + + D+ +ALD V + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 788 LSGK-TRVLVTNQL-HFLSQVDRIILVHEGMV 817
K T ++VT+ + L +R+I++H G +
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGTV 681
ER +++ + G + I G G GKT+L+ + G L P + + +R +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 682 AYVPQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
+ ++ + T +N+ F F + I + L D+ +
Sbjct: 74 H--QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW--EALAQVGLAGLEDL-PV 128
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 794
G +S GQ++RV++AR S + ++I D+P +ALD G + + + V
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIV 183
Query: 795 LVT 797
L+T
Sbjct: 184 LLT 186
|
Length = 209 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 35/210 (16%)
Query: 634 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 688
++ +L G + AIVG +G GK++L++ + G P S +I G V P VS
Sbjct: 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS-GRVLINGVDVTAAPPADRPVS 73
Query: 689 WIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
+F + TV N+ G +A + E A+ L LPG
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG------ 127
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC--IRGELSGKT 792
+SGG++QRV++AR + + V + D+P +ALD + ++ D + E + T
Sbjct: 128 -----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMT 181
Query: 793 RVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
++VT+Q ++ R++ + G + +G
Sbjct: 182 VLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-08
Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 76/374 (20%)
Query: 1107 RAYKAYDRMADINGKSMDKNI-RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 1165
RA ++ + + + +I R ++ A W I + GL+ ++ + G
Sbjct: 205 RAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-----GW 259
Query: 1166 AENQEAFASTMGLLLSYALNI----TSLLTAV-----LRLASLAENSLNAVERVGNYIEL 1216
A+ A+T Y+L + T LL+AV L A +A N LN +
Sbjct: 260 ADTN--VAAT------YSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA------ 305
Query: 1217 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVG 1273
P +A + P W + ++ +V Y+ + P+ + TI + + ++G
Sbjct: 306 PYKAEF--PRPQAFPDWQT---LELRNVTFAYQDNGFSVGPI----NLTIKRGELLFLIG 356
Query: 1274 RTGAGKS--SMLNT-LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 1330
G+GKS +ML T L++ G IL+DG + D RK+ + LF
Sbjct: 357 GNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL- 412
Query: 1331 RFNLDPFSEHSDADLWEA-LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389
L P + ++ L E LER + + D ++S S GQ++ L+L A
Sbjct: 413 ---LGPEGKPANPALVEKWLERLKMAHKLELE----DGRISNL--KLSKGQKKRLALLLA 463
Query: 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNTIID 1439
L IL+LDE A D R EF T+ I+H + I
Sbjct: 464 LAEERDILLLDEWAADQD--------PHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515
Query: 1440 CDRILLLDSGRVLE 1453
DR+L + +G++ E
Sbjct: 516 ADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP------- 685
L +++ + G L ++G G GKT+L+ + G+ P + + G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIA 79
Query: 686 --------QVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQH 721
Q +F N TVR+N+ +F S F E R ++ + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 722 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
+ D L +S GQKQ + + + + + + D+P++ + + +
Sbjct: 140 ERDRLAA-----------LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 782 RCIRGELSGKTRVLVTNQ-LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+ L+GK +LV + F+ ++ D++ ++HEG V EG+ +++ N+
Sbjct: 189 --LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236
|
Length = 249 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-08
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 33/225 (14%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 1301
E +R R VL L+ I P D V +VG++GAGK+ TL R++ G G
Sbjct: 385 ESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKT----TLLRMIL---GAQKGRG 437
Query: 1302 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP--FSEH-----SDADLWEA-LERAH 1353
+ + D K+ L G EH D + L RA
Sbjct: 438 EEKYR---PDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAG 494
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
L DA+ S GQ++ L++ L R +L++DE A +D T
Sbjct: 495 LSDAVLYRR---------KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545
Query: 1414 IQKTIRE---EFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 1453
+ + I E E T++++ HR + D ++L+ G+V
Sbjct: 546 VARKISELAREAGI-TLIVVTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 37/230 (16%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGELP-------------PVSD 672
E+ L +++LDIP ++ A +G +G GK++ ++ M + + D
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 673 AS---AVIRGTVAYVPQVSWIFNATVRDNILFGS---AFEPARYE-KAIDVTSLQHDLDL 725
+R V V Q F ++ +N+ +G ++ E I TSL+
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRK---- 146
Query: 726 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
G E+ +R G +SGGQ+QR+ +ARA+ + +V + D+P SALD +V +
Sbjct: 147 --AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-E 203
Query: 782 RCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
I EL T V+VT+ + ++V R H G + E G E + N
Sbjct: 204 ELID-ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 4e-08
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 31/256 (12%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------------------AMLGEL 667
E L N +L + ++G TG GK+++I A L ++
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 668 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 727
V I G V P+ +F T+ +I FG ++A L LP
Sbjct: 83 KEVKRLRKEI-GLVFQFPEYQ-LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 728 GGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR- 785
+ +R +SGGQK+RV++A + + + + D+P LD + R
Sbjct: 141 ----EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 786 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKME 844
+ K ++VT+ + L D +I++HEG V G+ ++ +N EL K+ + K+
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLY 256
Query: 845 EYVEE-KEDGETVDNK 859
+ + + K G + NK
Sbjct: 257 QLMYKLKNKGIDLLNK 272
|
Length = 289 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-08
Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 62/246 (25%)
Query: 603 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 662
LPNP L + GY +R L +I L++ GS + ++G G GK++LI
Sbjct: 308 LPNPLLKME----KVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKL 357
Query: 663 MLGELPPVSDASAVIRGT-VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 721
+ GEL PVS + +G + Y Q + +A D + LQH
Sbjct: 358 LAGELAPVSGEIGLAKGIKLGYFAQ-------------------HQLEFLRA-DESPLQH 397
Query: 722 DLDLLP-----------------GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 764
L P G VTE R SGG+K R+ +A V+ ++ +
Sbjct: 398 LARLAPQELEQKLRDYLGGFGFQGDKVTEETRR---FSGGEKARLVLALIVWQRPNLLLL 454
Query: 765 DDPLSALDAHVGRQVFDRCI---RGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKE- 819
D+P + LD + RQ + G L V+V++ H L S D + LVH+G V+
Sbjct: 455 DEPTNHLDLDM-RQALTEALIDFEGAL-----VVVSHDRHLLRSTTDDLYLVHDGKVEPF 508
Query: 820 EGTFED 825
+G ED
Sbjct: 509 DGDLED 514
|
Length = 638 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 48/229 (20%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASA 675
+ L +++L +P G + A++G G GK++L+ L P S +S
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 676 VIRGTVAYVPQVSWIFNA-TVRDNILFG-----------SAFEPARYEKAIDVTSLQHDL 723
+ +A +PQ TVR+ + +G SA + AR +A++ T
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT------ 126
Query: 724 DLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
+ + +R + ++SGGQ+QR +A + ++ V + D+P + LD + QV
Sbjct: 127 ------RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELM 178
Query: 783 CIRGELS--GKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 825
+ EL+ GKT V V LH L+Q D ++++ G V +GT E+
Sbjct: 179 RLMRELNTQGKTVVTV---LHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
Length = 255 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 40/227 (17%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 676
E+ L NI+ ++ GS VA+VG TG GK++L+ L P S +
Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78
Query: 677 ----IRGTVAYVPQV--SWIFNATVRDNILFG----SAFEPARYEKA---IDVTSLQHDL 723
+R V+ V Q + +F TV ++ FG E EKA + L DL
Sbjct: 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
I + +SGGQ +RV++A + ++ D+P + LD +++
Sbjct: 139 ----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188
Query: 784 IRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVKE---EGTFED 825
+ +G T +LVT+ + +++ D ++L H ++K + F D
Sbjct: 189 KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235
|
Length = 287 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-08
Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 54/279 (19%)
Query: 598 EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEG 655
++K+ +PNP S + ++N Y +D K E L NI+ + I+G +G G
Sbjct: 7 KKKLKVPNP--LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSG 64
Query: 656 KTSLISAMLGELPP----------------------VSDASAVI------RGTVAYVPQV 687
K++L++ G + + S I R V+ V Q
Sbjct: 65 KSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124
Query: 688 S--WIFNATVRDNILFGS-AFEPARYEKA------IDVTSLQHD-LDLLPGGDVTEIGER 737
+F T+ +I+FG A + E ++ L L+ P G
Sbjct: 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-------- 176
Query: 738 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 797
+SGGQK+RV++A + ++ IFD+P + LD ++ + + + KT ++T
Sbjct: 177 ---LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233
Query: 798 NQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 835
+ + H L D +I++ +G + + GT ++ + +
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
|
Length = 320 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 680
S+ ER ++ + G + + G G GKT+L+ + G L P S + +A+
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 681 VAYVPQVSWIFNA-------TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGD 730
+ ++ + + +N+ F +A E A+ L DL
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA-- 126
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
+S GQ++R+++AR S + ++I D+P +ALD
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 623 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIR 678
SW S R + +++ P GSL ++G G GK++L+ + G L P V A +
Sbjct: 8 SW-SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 679 G--------TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---- 725
G VA V Q TVRD + G P R A D HD +
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRI--PHRSLWAGDSP---HDAAVVDRA 121
Query: 726 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
L +++ + +R ++ +SGG++QRV +ARA+ + + D+P + LD V Q+ +
Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD--VRAQLETLAL 179
Query: 785 RGELSGKTRVLVTNQLHFL----SQVDRIILVHEGMVKEEGT 822
EL+ T V V LH L S D ++++ G V G
Sbjct: 180 VRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 6e-08
Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 54/199 (27%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 681
+++ ++ G +V I G G G+T L A+ G PP S IR +
Sbjct: 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
Query: 682 AYVP----QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 737
AYVP + + + +V +NI S LL
Sbjct: 78 AYVPEDRKREGLVLDLSVAENIALSS---------------------LL----------- 105
Query: 738 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 797
SGG +Q+V +AR + + V I D+P +D +++ +GK +L++
Sbjct: 106 ----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 798 NQLHFLSQV-DRIILVHEG 815
++L L + DRI++++EG
Sbjct: 162 SELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 35/188 (18%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP 685
S A L N+++ IP+ LV + G +G GK++L++ L
Sbjct: 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA------------------- 44
Query: 686 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745
+ I F F K I + LQ +D+ G +G++ +SGG+
Sbjct: 45 -------SGKARLISFLPKFS---RNKLIFIDQLQFLIDV--GLGYLTLGQKLSTLSGGE 92
Query: 746 KQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHF 802
QRV +A ++S +FI D+P + L Q+ + I+G + G T +L+ + L
Sbjct: 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDV 151
Query: 803 LSQVDRII 810
LS D II
Sbjct: 152 LSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-08
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 59/224 (26%)
Query: 1230 PPGWPSSGS--IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 1287
PPG P G I+ E++ + +L ++ LSF +PP VG++G GAGKS TLF
Sbjct: 313 PPG-PRLGDKVIEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKS----TLF 365
Query: 1288 RIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP----FSE 1339
R++ + + G I I + K +D QS R LDP + E
Sbjct: 366 RMITGQEQPDSGTIKIG--ETVKLAYVD---------QS--------RDALDPNKTVWEE 406
Query: 1340 HSD-ADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393
S D+ E RA++ R N G D Q + G+ S G+R + L++ L
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVG---RFNFKGSDQQ-KKVGQ-LSGGERNRVHLAKTLKSG 461
Query: 1394 SKILVLDEATAAVDVRT-----DALIQKTIREEFKSCTMLIIAH 1432
+L+LDE T +DV T +AL EF C + +I+H
Sbjct: 462 GNVLLLDEPTNDLDVETLRALEEAL------LEFAGCAV-VISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 8e-08
Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 1263 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 1315
IP + +G +G GKS++L R+ +L GR+L +I ++ + LR+
Sbjct: 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102
Query: 1316 LGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSE 1371
+G++ Q P F ++ N+ P + +L E +E D++RR ++ + ++ E
Sbjct: 103 VGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVE-----DSLRRAAIWEEVKDKLKE 157
Query: 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1431
G S GQ+Q L ++RA+ + +L++DE +A+D + +++ E + T++++
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 1432 HRL 1434
H +
Sbjct: 218 HNM 220
|
Length = 274 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 8e-08
Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 20/244 (8%)
Query: 1236 SGSIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 1292
S I ++V Y + P L+ S T + ++G TG+GKS+M+ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1293 ERGRILIDGFDIAKF-----GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADL 1345
E G+ ++ + I + LRK +G++ Q P LF T+ ++ + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1346 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
EA ++ + + ++ L D V + S GQ++ ++L+ + LVLDE T
Sbjct: 124 QEAYKK--VPELLKLVQLPED-YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 1406 VDVRTDA----LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
+D + + L ++ +E K M + H ++ ++ D ++++ G+V+ +P E+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIM--VTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 1461 LSNE 1464
SN+
Sbjct: 239 FSNQ 242
|
Length = 289 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-08
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 1312
L G+SFT+ + +VG +G GKS++ L I G + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1313 RKILGIIPQSPVLFSG-----TVRFNL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
R+ + I+ Q+P + V L +P ++ A ER R +L +
Sbjct: 91 RQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLS---AAER-------REKALAMM 138
Query: 1367 AQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
A+V E+ FS GQRQ ++++RAL+ ++V DE +A+DV
Sbjct: 139 AKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 9e-08
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 677
L N+N I G +V ++G +G GK++L+S M+G L + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 678 --RGTVAYVPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLP 727
+ + + Q + +F + +V N+LF G+A A A++ + L P
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA-ALERSGLDGAFHQDP 132
Query: 728 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 787
+SGGQ+ RV++ RA+ + + D+P S LD + R F + + E
Sbjct: 133 A-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL-RDQFRQWVFSE 180
Query: 788 L--SGKTRVLVTNQL 800
+ +G V VT+ L
Sbjct: 181 VRAAGIPTVQVTHDL 195
|
Length = 213 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 29/238 (12%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RK 1314
+SF + P + +GIVG +G+GKS++L L + + G A+ L L R+
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 1315 IL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1362
L G + Q+P V + L ++ RA +D +
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLEEVE 136
Query: 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTI 1418
+ ++ + FS G +Q L ++R L+ R +++ +DE T +DV A L++ +
Sbjct: 137 IDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 1419 REEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1475
R+ ++I+ H L + R+L++ GRV+E +++L + +++++ S+
Sbjct: 196 RD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 797
+SGGQKQRV++ARA+ SN V + D+ SALD R + + + I EL G T VL+T
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLIT 198
Query: 798 NQLHFLSQV-DRIILVHEGMVKEEGTFED 825
+++ + ++ DR+ ++ G + E+GT +
Sbjct: 199 HEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 56/261 (21%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------DASAV----IR 678
L IN++I G + AI+GG G GK++L + G L P S D S +R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 679 GTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 736
+V V Q + +F+A+V ++ FG +L+ LP +V + +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG-------------AVNLK-----LPEDEVRKRVD 123
Query: 737 RGVNISG--------------GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
+ +G GQK+RV++A + V + D+P + LD +G +
Sbjct: 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMK 182
Query: 783 CIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL--- 836
+ G T ++ T+ + + D + ++ EG V +G +++ E+ +K+
Sbjct: 183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLR 242
Query: 837 MENAGKMEEYVEEKEDGETVD 857
+ G + E ++EK DG D
Sbjct: 243 LPRIGHLMEILKEK-DGFVFD 262
|
Length = 283 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 632 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---------- 680
TLL+ ++L P G + ++G G GK++L+ MLG P S+ ++
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 681 ---VAYVPQ-VSWIFNATVRDNILFG-----------SAFEPARYEKAIDVTSLQHDLDL 725
VAY+PQ + TVR+ + G A + + E+AI + L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL------ 137
Query: 726 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALD-AHVGRQVFDRC 783
+ R V+ +SGG++QR +A V +S + D+P SALD AH QV
Sbjct: 138 ------KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---QVDVLA 188
Query: 784 IRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 826
+ LS + + V LH ++ D ++ + G + +GT +L
Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 31/155 (20%)
Query: 637 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--VAYVPQ---VSWIF 691
+L + G VAI+G +G GK++L++ + G L P S S + G P VS +F
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS-GSLTLNGQDHTTTPPSRRPVSMLF 77
Query: 692 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 737
+ TV NI G +A + + ++ L LPG
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------- 128
Query: 738 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
+SGGQ+QRV++AR + + + D+P SALD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 1e-07
Identities = 55/236 (23%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 617 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI------------SAML 664
IRN F W + L ++NLDI + A +G +G GK++ + ++
Sbjct: 83 IRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 665 GELPPVSD-------ASAVIRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPAR 709
GE+ + +S +R + V Q F ++ DN+ +G
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 710 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 769
EK++ +L ++ ++ + G +SGGQ+QR+ +ARA+ +V + D+P S
Sbjct: 202 VEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 770 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG 821
ALD ++ + + EL K +++ H ++Q RI + ++G ++E G
Sbjct: 255 ALDPIATAKIEELIL--ELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 619 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV------ 670
N YF + L N+NLDIP S+ A++G +G GK++ I + + +L P
Sbjct: 10 NTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64
Query: 671 ---------SDASAVI--RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYE 711
A V+ R V V Q F ++ DN+ +G F R E
Sbjct: 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE 124
Query: 712 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 771
+++ +L ++ ++ + + +SGGQ+QR+ +AR + + +V + D+P SAL
Sbjct: 125 ESLKAAALWDEVK-------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
Query: 772 D 772
D
Sbjct: 178 D 178
|
Length = 250 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---VSDASAVIRGTVAYVPQVSWIF 691
++NL + G ++A+VG +G GK+ A+LG LPP + ++ G +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 692 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------- 741
AT+ N +AF P AI+ L + E E V +
Sbjct: 64 IATIMQNPR--TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA-VGLPDPEEVLK 120
Query: 742 ------SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 793
SGG QRV +A A+ I D+P + LD +V R +R +L G
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR-QLFGTGI 179
Query: 794 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+L+T+ L ++++ D + ++ +G + E GT +++ N
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 31/184 (16%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
P I IR F + + L NIN+D P + AI+G +G GK++L+ A+ VS
Sbjct: 3 PKIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 673 AS-------------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAF----EPAR 709
A +R V V Q F ++ DN+ FG +R
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 710 YEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 768
++ ++ + Q L +V + + + G+ +SGGQ+QR+ +AR + +V + D+P
Sbjct: 120 LDEVVEKSLRQAAL----WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 769 SALD 772
SALD
Sbjct: 176 SALD 179
|
Length = 251 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAY 683
++P L I+ +P G L+ + G G GKT+L+ + G L P + ++ + Y
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 684 VPQVSWIF-------NATVRDNILFGSAFEPARYE--KAIDVTSLQHDLDLLPGGDVTEI 734
Q+ ++ T+R+N L+ F P + + SL+H +D P G
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCG----- 126
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
+S GQK++V++ R S + +++ D+PL ALD
Sbjct: 127 -----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVP 685
+ L +N ++ G + I G +G GKTSL+ A L L P + + ++P
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA-LAGLWPWGSGRISMPADSALLFLP 462
Query: 686 QVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742
Q ++ T+R+ + + +A F A + L + L E +S
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLS 517
Query: 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 802
GG++QR++ AR + D+ SALD +++ + ++ EL T + V ++
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTL 576
Query: 803 LSQVDRII 810
+ R +
Sbjct: 577 WNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--------------- 670
E+ L +INL I + A++G +G GK++ + + + +L
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 671 -SDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID--------VTSLQ 720
D V +R V V Q F ++ DN+ +G + +K +D +L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW 134
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
++ ++ + + +SGGQ+QR+ +AR + DV + D+P SALD ++
Sbjct: 135 DEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 781 DRCIRGELSGK-TRVLVTNQLHFLSQVDRI 809
D + EL + T V+VT H + Q R+
Sbjct: 188 DLMV--ELKKEYTIVIVT---HNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 31/244 (12%)
Query: 603 LPNPPLTSG---LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 659
+P P + P + IRN S+D + + +++L I G + A++G +G GK++L
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSFDGQ---HAVDDVSLTIYKGEIFALLGASGCGKSTL 61
Query: 660 ISAMLGELPPVSDASAVIRGTVAYVPQ----VSWIFNA-------TVRDNILFGSAFEPA 708
+ + G P + + +++VP ++ +F + TV NI FG +
Sbjct: 62 LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFG--LKQD 119
Query: 709 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDP 767
+ KA + + L L+ + E +R + +SGGQ+QRV++AR++ + + D+P
Sbjct: 120 KLPKAEIASRVNEMLGLV---HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176
Query: 768 LSALDA----HVGRQVFDRCIRGELSGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 822
+ ALD + +V D E G T V+VT +Q ++ RI +++ G + G
Sbjct: 177 MGALDKKLRDRMQLEVVDIL---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
Query: 823 FEDL 826
E++
Sbjct: 234 PEEI 237
|
Length = 377 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 50/204 (24%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDGFDIAKFGLMDL- 1312
L +S + + V + G GAGKS+++ L + G I+ +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 1313 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADL--WEALERAHLKDAIRRNSLGLDAQV 1369
R + II Q L +V N+ +E + + ++A+ +L+ L LD
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM---YLRAQKLLAQLKLDINP 137
Query: 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTM 1427
+ N +GQ+QL+ +++AL +++++L+LDE TA++ ++ + I + K+
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196
Query: 1428 LIIAHRLNTIID-CDRILLLDSGR 1450
+ I+H+LN + D I ++ GR
Sbjct: 197 IYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 692
L N++ I G ++AIVG +G GK++L+ +LG L + + G + ++S
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAK 81
Query: 693 ATVRDNILFGSAFEPARYEKAIDVTSLQH-DLDLLPGGD------------VTEIG---- 735
A +R+ L F + D T+L++ + LL G + +G
Sbjct: 82 AELRNQKL---GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 736 --ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---G 790
R +SGG++QRV++ARA+ +N + + D+P LDA +F + GEL+ G
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQG 196
Query: 791 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822
++VT+ L ++ R + + +G + E +
Sbjct: 197 TAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
Length = 233 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 639 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 697
I ++ I+G G GKT+ I + G L P + TV+Y PQ + + TVRD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 698 NILFGSAFEPARYEKAIDV-TSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAV 755
+ D T ++ + +I +R V +SGG+ QRV++A +
Sbjct: 81 LL----------SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL 130
Query: 756 YSNSDVFIFDDPLSALD 772
++D+++ D+P + LD
Sbjct: 131 SKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 38/238 (15%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 1305
VL G+S D + I+G +G+GKS+ L + + + G I+++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1306 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDP-------FSEHSDADLWEALERAH 1353
K L LR L ++ Q L+S TV N+ S+ EA ERA
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ------EARERA- 132
Query: 1354 LKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VR 1409
+G+D + + S GQ+Q +S++RAL ++L+ DE T+A+D V
Sbjct: 133 ---VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 1410 TDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGS 1466
I + + EE K TM+++ H + ++ L G++ E PE+L N S
Sbjct: 190 EVLRIMQQLAEEGK--TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-07
Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 83/312 (26%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LM 1310
+L +S + P K+G++G GAGKS TL RI + G D G
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFNGEARPA 65
Query: 1311 DLRKILGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--E 1350
K+ G +PQ P L + TVR N LD F+E S DAD+ +AL E
Sbjct: 66 PGIKV-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM-DALLAE 123
Query: 1351 RAHLKDAIR-RNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKIL 1397
+A L++ I ++ LD ++ A + S G+R+ ++L R LL + +L
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183
Query: 1398 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDS 1448
+LDE T +D + A +++ ++ E+ T++ + H DR IL LD
Sbjct: 184 LLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH--------DRYFLDNVAGWILELDR 233
Query: 1449 GRVLEY--------DTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLR--- 1497
GR + + + E+ L E S Q +++RS +A++K R
Sbjct: 234 GRGIPWEGNYSSWLEQKEKRLEQEEKEESAR-QKALKRELEWVRSSPKARQAKSKARLAR 292
Query: 1498 -EENKQIDGQRR 1508
EE + Q+R
Sbjct: 293 YEELLSQEFQKR 304
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMD 1311
+L ++FTI + V ++G +G GKS++L+ + + + G + ++ + L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 1312 LRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
++ +GI+ Q +LF + F L L R A+ R GLD
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA-------TLKGNARRNAANAALER--SGLD 125
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
+ S GQR ++L RALL + K L+LDE + +DV
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 40/167 (23%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--SDASAVIRGTVAYVPQVSWI 690
N+ LDIP + A +G +G GK++++ L +L P + G Y P V +
Sbjct: 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87
Query: 691 ---------------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE-- 733
F ++ DNI +G AR + + D+D L + +
Sbjct: 88 EVRRRIGMVFQKPNPFPKSIYDNIAYG-----AR------INGYKGDMDELVERSLRQAA 136
Query: 734 --------IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
+ + G+++SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 137 LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIRGTV------AYV 684
L INLDI + A++G +G GK++ + + + +L P S I G V Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP----SVKIEGEVLLDGQDIYK 74
Query: 685 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 726
+ F ++ DN+ +G + +K +D SL+
Sbjct: 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG----- 129
Query: 727 PGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
E+ +R + +SGGQ+QR+ +ARA+ +V + D+P SALD ++ +
Sbjct: 130 -AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 783 CIRGELSGK-TRVLVTNQLHFLSQVDRI 809
EL T V+VT H + Q RI
Sbjct: 189 IQ--ELKKDYTIVIVT---HNMQQASRI 211
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 44/237 (18%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 1310
VL+ +S IP V ++G +G+GK+ TL RI+ LE G I G D+++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKT----TLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 1311 DLRKILGIIPQSPVLF-----SGTVRFNLD--PFSEHSDAD--------LWEALERAHLK 1355
D RK+ G + Q LF + F L P E +A L E ++ AHL
Sbjct: 73 D-RKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
D AQ+S GQ+Q ++L+RAL +IL+LDE A+D + ++
Sbjct: 131 DR-------YPAQLSG-------GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
Query: 1416 KTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
+ +R EE K T + + H ++ DR++++ G + + TP+++ + F
Sbjct: 177 RWLRQLHEELK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVPQVS 688
L +I+L+ + A++G +G GK++ + + + +L P + I G Y P V
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 689 WI---------------FNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 725
+ F ++ +N+ +G A+ R E+++ +L ++
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK- 140
Query: 726 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
+ E + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 141 ------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
|
Length = 253 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 4e-07
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 1249 RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------ 1302
+ ++ V + LSF++ + + IVG +G+GKS L R++E G + D
Sbjct: 26 QQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84
Query: 1303 ----DIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALE 1350
++++ +R + G +I Q P+ V + +E H A EA+
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 1351 RA-HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 1409
A + D +R +S S G RQ + ++ AL R +L+ DE T A+DV
Sbjct: 145 EAKRMLDQVRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1410 TDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
A I + I+ K +M + I H + + + DR+L++ G +E + E++
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 32/212 (15%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---- 1311
L G + + P + +VG GAGKS+M+ L I + G IL G ++ G
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 1312 ----LRKILGIIPQSPV---LFSG---TVRFNLDPFSE-HSDADLWEALERAHLKDAIRR 1360
+ + L +IPQ + +F G RF + + +++AD + L R +L+ + +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD--KLLARLNLRFSSDK 137
Query: 1361 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDALIQKTIR 1419
V E S+G++Q++ +++ L SK++++DE T A+ D T++L + IR
Sbjct: 138 -------LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIR 185
Query: 1420 E-EFKSCTMLIIAHRLNTIID-CDRILLLDSG 1449
E + + ++ I+HRL I + CD + + G
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 34/250 (13%)
Query: 622 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----------LISAMLGELPPVS 671
F D KA L NIN+ I S+ A++G +G GK++ L+ + E +
Sbjct: 16 FYTDFKA----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71
Query: 672 DASAV---------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 722
+ + +R + V Q F ++ DNI +G + +K +D Q
Sbjct: 72 EGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSL 131
Query: 723 LDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
+V + + +++SGGQ+QR+ +AR + +V + D+P SALD ++ +
Sbjct: 132 KKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE 191
Query: 782 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
I + S T ++VT+ + ++ DR G ++EE S+ ELF
Sbjct: 192 LIINLKES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEE------SSTDELF--FNPKN 242
Query: 841 GKMEEYVEEK 850
K EEY+ K
Sbjct: 243 TKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-07
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 17/207 (8%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMDL- 1312
L G+ + P + VG+ G GAGKS+++ L + G I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 1313 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR-----NSLGLD 1366
R + II Q L +V N+ F + ++ R R L LD
Sbjct: 77 RAGIVIIHQELTLVPELSVAENI--FLGN---EITLPGGRMAYNAMYLRAKNLLRELQLD 131
Query: 1367 A-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKS 1424
A V+ ++ GQ+QL+ +++AL +++++L+LDE ++++ + ++ IR+ +
Sbjct: 132 ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 1425 CTMLIIAHRLNTIID-CDRILLLDSGR 1450
+ I+H+LN + CD I ++ G+
Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPP 669
E+ L N+++ IP S+ A++G +G GK++ I ++ GE
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 670 VSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG 728
D V +R V V Q F ++ DN+ +G A +K +D L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGAN-KKDLDGVVENA---LRSA 138
Query: 729 GDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
E +R +++SGGQ+QR+ +AR + + +FD+P SALD
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
|
Length = 258 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI----------VEL------ERGRILI 1299
LH + I + V ++G +G+GKS++L L + +EL GR+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 1300 D--------GFDIAKFGLMDLRKIL-----GIIPQSPVLFSGTVRFNLDPFSEHSDADLW 1346
D G+ +F L++ +L G + +P R F+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-----RTCFSWFTREQKQRAL 134
Query: 1347 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 1406
+AL R +G+ + S GQ+Q ++++RAL++++K+++ DE A++
Sbjct: 135 QALTR-----------VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 1407 DVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
D + ++ T+R+ + T+++ H+++ + C+RI+ L G V YD + N
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDN 242
Query: 1464 E 1464
E
Sbjct: 243 E 243
|
Length = 262 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 1312
PVL +S ++ + V + G +G+GKS++L +L+ + G+IL+ +DL
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG----EWVDLV 80
Query: 1313 ----RKILGIIPQSPVLFSGTVRF-----NLDPFSEHSDADLWEALERAHLKDAIRRNSL 1363
R++L + + S +R LD +E A E A K A L
Sbjct: 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-EVARAKAADLLTRL 139
Query: 1364 GLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1420
L ++ S A FS G++Q ++++R + IL+LDE TA++D A++ + IRE
Sbjct: 140 NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 677
R + +++L + G +V ++G G GKT+ ++G +P DA +I
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLH 73
Query: 678 ---RGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGD 730
R + Y+PQ + IF +V DN++ A + D+++ Q + +L+
Sbjct: 74 ARARRGIGYLPQEASIFRRLSVYDNLM-------AVLQIRDDLSAEQREDRANELMEEFH 126
Query: 731 VTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGE 787
+ + + G ++SGG+++RV +ARA+ +N + D+P + +D V D R I
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP---ISVIDIKRIIEHL 183
Query: 788 LSGKTRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
VL+T N L+ +R +V +G + GT ++ +
Sbjct: 184 RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-07
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 799
SGGQ+QR+++ARA+ ++ + D+P SALD V QV D R ++ + G + + +++
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHD 486
Query: 800 LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKME 844
L + + R+I++ +G + E+G E + N E + L+ A +E
Sbjct: 487 LAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAFDIE 534
|
Length = 534 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 7e-07
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 33/205 (16%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPPV 670
E L +INL IP + A++G +G GK++L+ M GE
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 671 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 730
+ A +R V V Q F ++ +N+ +G + + +K +D + L G
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS----LRGAA 130
Query: 731 V-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
+ E+ +R +SGGQ+QR+ +AR + DV + D+P SALD ++ + +
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE--LM 188
Query: 786 GELSGK-TRVLVTNQLHFLSQVDRI 809
EL T V+VT H + Q RI
Sbjct: 189 EELKKNYTIVIVT---HSMQQARRI 210
|
Length = 249 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 34/206 (16%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS--DASAVIRGTVAY 683
++ + N+NLD+ G++ A++G +G GKT+ + A+ + +L P + ++ G Y
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 684 VP---------QVSWIFNA-------TVRDNILFGSAFEPARYEKAI-DVTSLQHDLDLL 726
P +V +F +V DN++ G R + +V L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS-----L 129
Query: 727 PGGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
G + E+ +R +SGGQ+QR+ +ARA+ ++ + D+P SALD ++ D
Sbjct: 130 RGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 782 RCIRGELSGKTR-VLVTNQLHFLSQV 806
+ +L T ++VT+ +H ++V
Sbjct: 190 --LMTDLKKVTTIIIVTHNMHQAARV 213
|
Length = 252 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 8e-07
Identities = 46/218 (21%), Positives = 104/218 (47%), Gaps = 40/218 (18%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----E 1293
++ E++ + Y L + + IP + +G +G GKS++L R+ +L
Sbjct: 11 LRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 1294 RGRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTV-------------RFNLDPFS 1338
G++ G ++ + +++R+ +G++ Q P F ++ + ++D
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELV 128
Query: 1339 EHS--DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396
E S A LW+ +KD ++++ L L S GQ+Q L ++RA+ + ++
Sbjct: 129 ERSLRQAALWD-----EVKDKLKQSGLSL-----------SGGQQQRLCIARAIAVQPEV 172
Query: 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1434
+++DE +A+D + I++ + E + T++I+ H +
Sbjct: 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 8e-07
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 1317
LSFT+ + I+G G+GKS++ L ++E G +LID + FG R + +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDYSYRSQRIR 90
Query: 1318 IIPQSPV-----------LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
+I Q P + +R N D E + + E L + L L
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL----------LP 140
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 1424
S + GQ+Q L L+RAL+ R K+++ DEA A++D+ + + + E E +
Sbjct: 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 1425 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
+ + + L + D++L++ G V+E + ++L+
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---- 684
++ L +I + IP S+ I+G +G GK++L+ +L L + D+ + G V Y
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 685 ---------PQVSWIFNA-------TVRDNILF---GSAFEPARYEKAIDVTSLQHDLDL 725
+V +F ++ DNI + + R K I L+
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV--- 137
Query: 726 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
G E+ +R +SGGQ+QR+++ARA+ V + D+P S +D V Q +
Sbjct: 138 ---GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIE 193
Query: 782 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQK 835
+ I + V+V++ +++V D + ++ G + E G+ ++ S EL +K
Sbjct: 194 KLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
Length = 257 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS---LISAMLGELPPV- 670
+ + N F ++ +++ L ++ I G V+I+G G GK++ LI + E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 671 --------SDASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
++ +R + V Q + ATV D++ FG + E+ I +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK----R 120
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
D LL + +SGGQKQRV++A + ++ I D+ S LD GRQ
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP-TGRQEI 179
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEE-------GTFEDLSNNG 830
R I E+ K ++ V + H L + DRI+++ G + +E T ED+ G
Sbjct: 180 MRVIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIG 238
Query: 831 -------ELFQKLMENAGKM-EEYVEEKEDGETVDNK 859
L + L +N + E+Y+ E E E + +K
Sbjct: 239 LDVPFSSNLMKDLRKNGFDLPEKYLSEDELVELLADK 275
|
Length = 277 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 63/286 (22%), Positives = 123/286 (43%), Gaps = 55/286 (19%)
Query: 643 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIF 691
G +V +G G GK++ + + G LPP S + V ++ + Y+P+ + ++
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87
Query: 692 -NATVRDNILFGSAF-------EPARYEKAIDVTSL---QHDLDLLPGGDVTEIGERGVN 740
+ VR+ + F + R E+ I++ L QH +IG+
Sbjct: 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH----------KKIGQ---- 133
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 798
+S G +QRV +A+A+ + V I D+P + LD + Q+ + I+ KT +L T
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN---QLVEIRNVIKNIGKDKTIILST- 189
Query: 799 QLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG- 853
H + +V DR+I++++G + + ++LS + +E +++ + E +
Sbjct: 190 --HIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQIDLQLFETLEEI 247
Query: 854 ----ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 895
T N ND E + K K + ++Q E+
Sbjct: 248 SSVKNTGGNTWKLTFET--PNDTRPEIFKLAQQKGLKLISLQQNEK 291
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 47/209 (22%), Positives = 100/209 (47%), Gaps = 40/209 (19%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPVSDASAVI-RGTVAYV 684
++ L +++LD + A++G +G GK++L+ ++ + +L P V+ +++ G Y
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 685 PQVSWI---------------FNATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDL 725
P+ + F ++ +N+++G + ++A++ SL+
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVE-KSLK----- 130
Query: 726 LPGGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
G + E+ +R + +SGGQ+QRV +AR + ++ + + D+P SALD ++
Sbjct: 131 --GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI- 187
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRI 809
+ + G T +LVT + Q RI
Sbjct: 188 EETLLGLKDDYTMLLVT---RSMQQASRI 213
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
I+ E++ Y +L +S TI P D++G+VGR GAGKS++L + +E + G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-06
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 44/221 (19%)
Query: 1262 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 1321
TI P KVG+VG+ G GKS++L L + I DG + ++ + +
Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALL-------KNEISADG---GSYTFPGNWQLAWVNQE 72
Query: 1322 SPVLFSGTVRFNLDPFSEHS--DADLWEALER------AHLK---DAI-------RRNSL 1363
+P L + + +D E+ +A L +A ER A + DAI R SL
Sbjct: 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 1364 --GL---DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI--QK 1416
GL + Q+ +FS G R L+L++AL+ RS +L+LDE T +D+ DA+I +K
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL--DAVIWLEK 190
Query: 1417 TIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLEY 1454
++ T+++I+H L+ I+ D+I+ ++ + EY
Sbjct: 191 WLKS--YQGTLILISHDRDFLDPIV--DKIIHIEQQSLFEY 227
|
Length = 638 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-06
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDL----- 1312
+SF++ + +G+ G GAG++ ++ LF + G + I+G +
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 1313 ------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
RK GI+P V + T+ L F D A E + AI+R +
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNITLS-VLKSFCFKMRID--AAAELQIIGSAIQRLKVKTA 395
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSC 1425
+ G S G +Q L++ LL ++L+LDE T VDV I K I + +
Sbjct: 396 SPFLPIG-RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 1426 TMLIIAHRLNTIID-CDRILLLDSGRV 1451
+++++ L ++ DR+L++ G++
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 55/278 (19%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 671
+ R+ +S+ E L IN G +VA++G G GK++L G L P S
Sbjct: 2 LETRDLKYSYPDGTE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 672 ---------DASAVI--RGTVAYVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTS 718
D +++ R TV V Q +F TV +++ FG
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP--------------- 104
Query: 719 LQHDLDL-LPGGDVTE--------IGERGV------NISGGQKQRVSMARAVYSNSDVFI 763
L+L L +V + +G G ++SGGQK+RV++A + ++ +
Sbjct: 105 ----LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160
Query: 764 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 822
D+P S LD Q+ G T ++ T+ + + D++ ++ +G + +EGT
Sbjct: 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
Query: 823 FEDLSNNGELFQKLMENAGKMEEYVE--EKEDGETVDN 858
+++ ++ E +K ++ +E KED +
Sbjct: 221 PKEVFSDIETIRKANLRLPRVAHLIEILNKEDNLPIKM 258
|
Length = 275 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 1262 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK--FGLMDLRKIL 1316
T+P I GR+GAGK+S++N + + ++GRI+++G FD K + R+I
Sbjct: 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI- 78
Query: 1317 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375
G + Q LF VR NL S ++ + LG++ + +
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL----------LGIEPLLDRYPGS 128
Query: 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLIIAH 1432
S G++Q +++ RALL ++L++DE A++D+ R L+ + + E +L ++H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSH 187
Query: 1433 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
L+ I+ DR+++L+ G+V + EE+ ++
Sbjct: 188 SLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 39/168 (23%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLI-----------------SAML-GE------LPPV 670
++NL+I S+ A +G +G GK++++ +L GE + PV
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 671 SDASAVIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 729
+ +R T+ V Q F ++RDN++ G R +K +D + L G
Sbjct: 82 A-----VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKS----LRGA 132
Query: 730 DV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
++ E+ +R G +SGGQ+QR+ +ARA+ DV + D+P SALD
Sbjct: 133 NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 51/244 (20%)
Query: 614 AISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 668
+S + K + T+LN ++L + G VA++G +G GK++L ++G E P
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 669 -------PVS----DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 717
P++ R + V Q D+I SA P + + I
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQ----------DSI---SAVNPRKTVREIIRE 114
Query: 718 SLQHDLDLLPGGDVTEIGE--RGVN------------ISGGQKQRVSMARAVYSNSDVFI 763
L+H L L + E R V+ +SGGQ QRV +ARA+ + I
Sbjct: 115 PLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
Query: 764 FDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMVK 818
D+ +S LD + V + + G + +T H L V+ R++++ G +
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT---HDLRLVERFCQRVMVMDNGQIV 231
Query: 819 EEGT 822
E
Sbjct: 232 ETQP 235
|
Length = 268 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 28/232 (12%)
Query: 1243 DVVLR------YRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LE 1293
+V+L + P P + +SF++ + +GI G GAG++ ++ LF
Sbjct: 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW 316
Query: 1294 RGRILIDGFDIA--------KFGLMDL---RKILGIIPQSPVLFSGTVRFNLDPFSEHSD 1342
G I IDG + G+ + RK GI+P V + T+ LD F+ S
Sbjct: 317 EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA-ALDRFTGGSR 375
Query: 1343 ADLWEALERAHLKDAIRRNSLGLDAQVSE-AGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
D +A E + ++I+R L + E A S G +Q L++ LL KIL+LDE
Sbjct: 376 ID--DAAELKTILESIQR--LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE 431
Query: 1402 ATAAVDVRTDALIQKTIREEFKSCTMLI-IAHRLNTIID-CDRILLLDSGRV 1451
T +DV I K I + + +I I+ L ++ DR+L++ G++
Sbjct: 432 PTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 1253 PPVLHGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFG 1308
P++HG+S T+ + +VG +G+GKS + L L V GR+L+DG +A
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 1309 LMDLRKILGII--PQS---PVLFSGT-VRFNLDPFSEHS-DADLWEALERAHLKDAIRRN 1361
L RKI I+ P+S P+ T R + + DA L ALE L++A R
Sbjct: 76 LRG-RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARV- 133
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKT 1417
L E S G Q + ++ ALL + ++ DE T +DV A L++
Sbjct: 134 ---LKLYPFE----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186
Query: 1418 IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
+++ ++ ML++ H + + D + ++ GR++E E L + + ++
Sbjct: 187 VQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRS 239
|
Length = 254 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 30/224 (13%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
LS + + + +VG GAGKS++L + ++ G I G + + +L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAY 73
Query: 1319 IPQ--SPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373
+ Q +P F + F + H + L + LGLD ++ +
Sbjct: 74 LSQQQTPP-------FAMPVFQYLTLHQPDKTRTEAVASALNEVAEA--LGLDDKLGRSV 124
Query: 1374 ENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 1425
S G+ Q + L+ +L+ ++L+LDE ++DV A + + + E C
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE---LCQ 181
Query: 1426 ---TMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+++ +H LN T+ DR+ LL G++L +E+L+ E
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 692
L NI+ ++P G +V I+G G GK++L + + G P + + I+G+ A + S +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNG 98
Query: 693 A-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------SGG 744
T +NI EK ++ ++ E + G I S G
Sbjct: 99 QLTGIENIELKGLMMGLTKEKIKEIIP-----------EIIEFADIGKFIYQPVKTYSSG 147
Query: 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 804
K R+ A +V+ N D+ + D+ LS D ++ D+ + GKT ++ H LS
Sbjct: 148 MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS---HSLS 204
Query: 805 QVD----RIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKED 852
QV + + +H G VKE G +++ ++ + + ++ +M VEE++D
Sbjct: 205 QVKSFCTKALWLHYGQVKEYGDIKEVVDH---YDEFLKKYNQMS--VEERKD 251
|
Length = 549 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 2e-06
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 64/199 (32%)
Query: 1258 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER---GRILIDGFDIAKFGLMDLR 1313
LSF++PP VGI+G GAGKS TLF+ I E+ G I I G + K +D
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKS----TLFKMITGQEQPDSGTIKI-G-ETVKLAYVD-- 393
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------------RAHLKDAI 1358
QS R LDP + +WE + RA++
Sbjct: 394 -------QS--------RDALDP-----NKTVWEEISGGLDIIKVGNREIPSRAYVG--- 430
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-----DAL 1413
R N G D Q + G S G+R L L++ L + +L+LDE T +DV T +AL
Sbjct: 431 RFNFKGGDQQ-KKVG-VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
Query: 1414 IQKTIREEFKSCTMLIIAH 1432
EF C + +I+H
Sbjct: 489 ------LEFPGCAV-VISH 500
|
Length = 556 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IR 678
ER L + G ++A++G +G GK++L++A+ G + + + I
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 679 GTVAYVPQVSWIF-NATVRDNILFGSAFE-P---ARYEKAIDVTSLQHDLDLLPGGDVTE 733
+V Q ++ + TVR+ ++F S P + EK + S+ +L L + T
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TI 198
Query: 734 IGE---RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 790
IG RG ISGG+++RVS+A + N + I D+P S LDA ++ G L+
Sbjct: 199 IGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL--GSLAQ 254
Query: 791 KTRVLVTNQLHFLSQV----DRIILVHEG 815
K + +VT+ S+V D ++++ EG
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRK 1314
L +SF ++G GAGKS++L L + + G ILIDG ++ L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 1315 ILGIIPQ----SPVLFSGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
+ II Q P + TV NL P H + L ++ + LG+D
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLGQLP---HKGGIVNRRLLNYEAREQLEH--LGVD 131
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDAL--IQKTIREEFK 1423
+ S+GQRQ++ +++AL R ++++ DE T+++ R + L + + +R E +
Sbjct: 132 IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR 191
Query: 1424 SCTMLIIAHRLNTIID-CDRILLLDSGR 1450
+L ++HR+ I CD I + GR
Sbjct: 192 --VILYVSHRMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 52/217 (23%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-FRIVELER--GRILIDGFDIAKFGLM 1310
P+L S + P + V ++GR G+G S++L L R G I +G +F
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE- 79
Query: 1311 DLRKILGIIPQSPVLFSG---------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1361
+++ TVR LD F+
Sbjct: 80 --------KYPGEIIYVSEEDVHFPTLTVRETLD-FA----------------------- 107
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 1420
L + +E S G+R+ +S++ AL+ R+ +L D +T +D T I K IR
Sbjct: 108 ---LRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1421 --EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEY 1454
K+ T + + + I D D++L+L GR + Y
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 38/235 (16%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
A+ + F + R L +++ + G VA++G G GK++L S +
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 672 ----------DASAVIRGTVAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAI 714
A + Q + + +VR N+ + A AR + +
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
L D ++ ++GG ++RV +ARA+ + + D+P LD
Sbjct: 118 ARLGLAERAD-----------DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 775 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 826
R +R L+ + V H + ++ DR++++H G V +G +L
Sbjct: 167 -SRAAITAHVR-ALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 636 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA-----------------V 676
+N DI + AI+G +G GK++ + A+ + +L P + +
Sbjct: 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117
Query: 677 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 736
+R + V Q F ++ DNI +G +K ++ + L E+ +
Sbjct: 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSD 174
Query: 737 R----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 791
R + +SGGQ+QR+ +AR + ++ + D+P SALD ++ D + EL G
Sbjct: 175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED--LIQELRGSY 232
Query: 792 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
T ++VT+ + S+V D + +EG++ E L N
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 55/219 (25%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
VL+ L IP V +VGR+G GKS TL R L+ G + G
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKS----TLLR---------LLAGLETPSAG------ 67
Query: 1315 ILGIIPQSPVLFSGTVRFNLDPFSE--------HSDADL--WEAL-------ERAHLKDA 1357
L +GT P +E DA L W+ + + +DA
Sbjct: 68 ---------ELLAGTA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113
Query: 1358 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
+ ++GL + +E S GQ+Q ++L+RAL+ R +L+LDE A+D T +Q
Sbjct: 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 1416 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 1451
I ++ T+L++ H ++ + DR+LL++ G++
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 1317
+SF++ + +G G G+G++ ++N LF + + G I ++G DI+ +D ++K +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 1318 IIPQS-------------------PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358
I +S L G + + F E + E +R L A+
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN-QRELL--AL 398
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
+ +S+ + ++E S G +Q + +S+ L ++++ DE T +DV A I K +
Sbjct: 399 KCHSV--NQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 1419 R---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
R ++ K +L+++ L II CDRI + GR+ + T + +S E
Sbjct: 453 RQLADDGK--VILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEE 500
|
Length = 510 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 60/221 (27%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAVIRGTVA------YV 684
L +++DIP S+ A++G +G GK S L L ++D +A I G+V Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGK----STFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 685 PQVSWI---------------FNATVRDNI-----------------LFGSAFEPAR--- 709
V+ + F ++R+NI L G + A
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 710 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 769
E+++ +L +++ + + + +SGGQ+QR+ +AR + + +V + D+P S
Sbjct: 177 VERSLRQAALWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 770 ALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 809
ALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 230 ALDPIATSKIED--LIEELAEEYTVVVVT---HNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 4e-06
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASA 675
A + L +++ P ++ +++G TG GKT+ + + G++ +
Sbjct: 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91
Query: 676 VIRGTVAYVPQVSWIFN------ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 729
R + + +V +F ++ DN+L G R K + + + +
Sbjct: 92 NYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG-----VRAHKLVP----RKEFRGVAQA 142
Query: 730 DVTEIG----------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
+TE+G + +SGGQ+Q + +AR + N +V + D+P SALD ++
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 780 FDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 826
+ IR T ++VT+ L +++ DR L +G + EEG E L
Sbjct: 203 -EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
Length = 276 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 708 ARYEKAIDVTSL------QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
R ++AID+ + LD+ P +SGG QRV +A A+ +
Sbjct: 126 TRRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKL 174
Query: 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTR---VLVTNQLHFLSQV-DRIILVHEGMV 817
I D+P +ALD + Q+ + + EL K VL+T+ L +++ +II+++ G V
Sbjct: 175 LIADEPTTALDVTIQAQIIELLL--ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
Query: 818 KEEGTFEDL 826
E G D+
Sbjct: 233 VETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 43/224 (19%)
Query: 1251 ELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG----FDI 1304
P V L ++ + P ++G GAGKS++L LF I + + G IL G F
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 1305 AKFGLMD----LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK----- 1355
+K L + + + L ++ Q V+ ++W L R K
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVM-----------------DNMW--LGRYPTKGMFVD 107
Query: 1356 -DAIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
D + R++ L +D SV Q Q++ +++A +KI+++DE T+++
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167
Query: 1409 RTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGR 1450
+ + IR+ + + C ++ I+H++ I CD I +L G+
Sbjct: 168 KEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 5e-06
Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 43/255 (16%)
Query: 603 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 662
+ PP T G + + + S + + +++ ++ G +V I G G G++ L+ A
Sbjct: 246 VVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303
Query: 663 MLGELPPVS--------------DASAVIRGTVAYVP----QVSWIFNATVRDNILFGSA 704
+ G P S R +AYVP + + ++ +N++ G
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 705 FEPARYEKAI--------DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 756
+ L + D+ ++SGG +Q++ +AR +
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 757 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQLHFLSQV-DRII 810
D+ I P LD VG F I L +GK +L++ L + ++ DRI
Sbjct: 420 RRPDLLIAAQPTRGLD--VGAIEF---IHERLLELRDAGKAVLLISEDLDEILELSDRIA 474
Query: 811 LVHEGMVKEEGTFED 825
+++EG + E+
Sbjct: 475 VIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 612 LPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELP 668
+PAI +++ F ++ SKA + I++DI + AI+G +G GK++ I + + EL
Sbjct: 5 IPAIKVKDLSFYYNTSKA----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60
Query: 669 -PVSDASAV-IRGTVAYVP---------QVSWIFNATVRDNILFGSAFEPARYEKAIDVT 717
PV V G Y P Q+ +F R N S +E Y I
Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ---RPNPFPMSIYENVAYGVRISAK 117
Query: 718 SLQHDLD-----LLPGGDV-----TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 767
Q DLD L G + ++ + + +SGGQ+QR+ +ARA+ V + D+P
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 768 LSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRI 809
SALD +V + +R EL T +VT H + Q R+
Sbjct: 178 CSALDPIATMKVEELIHSLRSEL---TIAIVT---HNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 694
NI+L +P S+ ++G G GK++L+ + G L P S + G W T
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS-GEIIFDGH-------PW----T 65
Query: 695 VRDNILFGSAFE-PARYEK--AID----VTSLQH-----DLDLLPGGDVTEIGERGV-NI 741
+D GS E P YE A + T+L ++L D+T G++
Sbjct: 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQF 125
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 801
S G KQR+ +A A+ ++ + I D+P + LD +G Q IR V++++ H
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-IGIQELRELIRSFPEQGITVILSS--H 182
Query: 802 FLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQK 835
LS+V D I ++ EG++ +G N +LF +
Sbjct: 183 ILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVE 220
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 6e-06
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 52/272 (19%)
Query: 599 EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 658
E + P G P + +RN S K +++ + G ++ I G G G+T
Sbjct: 248 EDLFPEPPEEGIGEPVLEVRN--LSGGGKVR-----DVSFTVRAGEILGIAGLVGAGRTE 300
Query: 659 LISAMLGELPPVSDASAVIRGT--------------VAYVP---QVSWIF-NATVRDNIL 700
L A+ G P S ++ G +AYVP + + + ++ +NI
Sbjct: 301 LARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359
Query: 701 FGS-------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753
S R E+A+ L + IG +SGG +Q+V +AR
Sbjct: 360 LASLRRFSRRGLIDRRKERAL-AERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLAR 414
Query: 754 AVYSNSDVFIFDDPLSALDAHVG--RQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DR 808
+ ++ V I D+P +D VG +++ R IR EL+ GK ++++++L L + DR
Sbjct: 415 WLATDPKVLILDEPTRGID--VGAKAEIY-RLIR-ELAAEGKAILMISSELPELLGLSDR 470
Query: 809 IILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
I+++ EG + E E+ + + +M A
Sbjct: 471 ILVMREGRIVGELDREEAT-----EEAIMAAA 497
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-06
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 615 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
I++ N ++ + LL N++L + G + +VG G GK++L+ + GEL P D+
Sbjct: 4 ITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DS 57
Query: 674 SAVIRG---TVAYVPQVSWIF-NATVRDNILFGSAFEP-----ARYEKAID--------- 715
V R V Y+ Q + TV D ++ F A E+A
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVI--EGFGELRELLAELEEAYALLADPDDEL 115
Query: 716 VTSLQHDLDLLPGGDV-TEIGE--RGVNI----------SGGQKQRVSMARAVYSNSDVF 762
+ L+ L+ L G + E G+ SGG ++RV++ARA+ D+
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLL 175
Query: 763 IFDDPLSALDA 773
+ D+P + LD
Sbjct: 176 LLDEPTNHLDL 186
|
Length = 530 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 35/206 (16%)
Query: 646 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQ-------------- 686
+AI+G G GK++L + G + P S D + G +Y Q
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101
Query: 687 ----VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742
+S I + +R N + EP + EK I T Q + LLP ++
Sbjct: 102 PRQRISQILDFPLRLN----TDLEPEQREKQIIETLRQ--VGLLP----DHASYYPHMLA 151
Query: 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLH 801
GQKQR+ +ARA+ V I D+ L++LD + Q+ + + E G + + VT L
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211
Query: 802 FLSQV-DRIILVHEGMVKEEGTFEDL 826
+ + D+++++H+G V E G+ D+
Sbjct: 212 MMKHISDQVLVMHQGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-06
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 1257 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316
GLSFT+ + V I G GAGK+S+L L + + G +L G I + + +L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 1317 ------GIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 1366
GI L T +RF D LWEAL + L D
Sbjct: 78 YLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEALAQVGLA---GF----ED 124
Query: 1367 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1420
V S GQ++ ++L+R L R+ + +LDE A+D + A ++ + +
Sbjct: 125 VPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
SGGQ+QR+++ARA+ + DV + D+P+SALD V QV
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193
|
Length = 327 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-06
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 48/192 (25%)
Query: 637 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 680
L P G +V I+G G GK++ + + GEL P VI RGT
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152
Query: 681 --------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 726
YV + + V + L E ++++ ++ L++ LD
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD-- 208
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCI 784
++ E +SGG+ QRV++A A+ ++DV+ FD+P S LD RQ + R I
Sbjct: 209 -----RDVSE----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDI---RQRLNAARVI 256
Query: 785 RGELSGKTRVLV 796
R V+V
Sbjct: 257 RELAEDGKYVIV 268
|
Length = 591 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 54/187 (28%)
Query: 639 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 698
+ G ++ IVG G GKT+ + + G+L P D T Y PQ
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ------------ 68
Query: 699 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 758
ID L GG++ QRV++A A+ N
Sbjct: 69 --------------YID----------LSGGEL---------------QRVAIAAALLRN 89
Query: 759 SDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 816
+ ++FD+P + LD R R IR E KT ++V + L L + I V EG
Sbjct: 90 ATFYLFDEPSAYLDIE-QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGE 148
Query: 817 VKEEGTF 823
G
Sbjct: 149 PGVYGIA 155
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 44/262 (16%)
Query: 1239 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLF----- 1287
IK +++V + +LP L +S I + + I+G+TG+GK++ LN L
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 1288 ---------------RIVELERGRILIDGFDIAKF-GLMDLRKILGIIPQ--SPVLFSGT 1329
+ E +++I K + ++R+ +G++ Q LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1330 VRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSL 1386
+ ++ P S + EA +RA I +GLD + S GQ++ ++L
Sbjct: 123 IEKDIIFGPVSMGVSKE--EAKKRA--AKYIEL--VGLDESYLQRSPFELSGGQKRRVAL 176
Query: 1387 SRALLRRSKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDR 1442
+ L LV DE TA +D V+ I + ++ K T++++ H L+ +++ R
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHDLDNVLEWTKR 234
Query: 1443 ILLLDSGRVLEYDTPEELLSNE 1464
+ G++++ ++LS+
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-05
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 799
SGGQ+QRV +A A+ + D+ I D+P +ALD V Q+ D + ++ EL G + +T+
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHD 217
Query: 800 LHFLSQV-DRIILVHEGMVKEEGTFEDL 826
L + + DR+ ++ G + E GT E L
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
P L ++ T+ + + ++G +G GK+++LN + V + G I +DG + G R
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE--R 72
Query: 1314 KIL----GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1369
++ G++P V V F L + + + + LE AH +++ L
Sbjct: 73 GVVFQNEGLLPWRNVQ--DNVAFGL----QLAGVEKMQRLEIAH--QMLKKVGL------ 118
Query: 1370 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----DALIQKTIREE 1421
A + + S GQRQ + ++RAL ++L+LDE A+D T L+ K +E
Sbjct: 119 EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET 178
Query: 1422 FKSCTMLIIAHRLNTIIDCDRILLLDS---GRVLE 1453
K +L+I H + + L+L S GRV+E
Sbjct: 179 GKQ--VLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 680
+ R ++ + G + + G G GKT+L+ + G PP++ + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 681 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 740
+ + ++ +A L S E R+ A + L + +R V
Sbjct: 69 DSIARGLLYLGHAPGIKTTL--SVLENLRFWHADHSDE--QVEEALARVGLNGFEDRPVA 124
Query: 741 -ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
+S GQ++RV++AR + S ++I D+P +ALD
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 46/227 (20%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 680
+++L + G L I+G G GKT+++ + G+ P + S + GT
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAG 78
Query: 681 VAYVPQVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQHDLD 724
+ Q +F N TV +N+ +F S F E R E+ ++ L + D
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD 138
Query: 725 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
L G +S GQKQ + + + + + + D+P++ + + +
Sbjct: 139 RLAG-----------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 785 RGELSGKTRVLVTNQ-LHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 829
L+GK V+V + F+ + + V H+G V EG+ + + +
Sbjct: 188 S--LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD 232
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 50/238 (21%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAVIRGTV------- 681
R L +++L I G + A++G G GK++L+ A+ G+L + A + G V
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 682 ------------AYVPQVSW-IFNATVRDNILFG------SAFEPARYEKAIDVTSLQH- 721
A +PQ + F + R+ +L G A + I +L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 722 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV---------YSNSDVFIFDDPLSALD 772
L G DVT +SGG+ RV AR + + D+P +ALD
Sbjct: 134 GATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Query: 773 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS----QVDRIILVHEGMVKEEGTFEDL 826
++ D R L+ + V +H + DRI ++ +G + G D+
Sbjct: 187 LAHQHRLLDTVRR--LARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
Length = 272 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 38/171 (22%)
Query: 637 NLDIPVGSLVAIVGGTGEGKTSLISAM------------------LGE------LPPVSD 672
++ I + +G +G GK++++ ++ LG+ + PV
Sbjct: 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV-- 85
Query: 673 ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
V+R + V Q F+ ++ DN+ FG RY K ++H L D
Sbjct: 86 ---VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLN--RY-KGDLGDRVKHALQGAALWD-- 137
Query: 733 EIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
E+ ++ G+++SGGQ+QR+ +ARA+ + +V + D+P SALD R+V
Sbjct: 138 EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188
|
Length = 261 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 1311
VLH +SF+I + + IVG +G+GKS++L+ L + G ++ +G ++K +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1312 LR-KILGIIPQ---------------SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1355
LR + LG I Q P+L E RA
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA--------------EINSRALEM 129
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 1414
A ++GL+ + + S G+RQ ++++RAL+ ++++ DE T +D R D++
Sbjct: 130 LA----AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 1415 Q 1415
Q
Sbjct: 186 Q 186
|
Length = 233 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 40/206 (19%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASAV---- 676
L NIN+ + + A++G +G GK++ + GE+ D +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 677 -----IRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDL 723
+R ++ V Q F ++ +N+ +G + R E A+ +L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
+G+ N+SGGQ+QR+ +ARA+ ++ ++ +FD+P SALD + +
Sbjct: 152 K-------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP-IATASIEEL 203
Query: 784 IRGELSGKTRVLVTNQLHFLSQVDRI 809
I +L K +L+ H + Q R+
Sbjct: 204 I-SDLKNKVTILIVT--HNMQQAARV 226
|
Length = 265 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 43/223 (19%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID----GFDIAKFGLMDL-- 1312
+SF + P + +GIVG +G+GK+++L + GR+ D + + DL
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCI-------SGRLTPDAGTVTYRMRDGQPRDLYT 77
Query: 1313 -----RKIL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 1355
R+ L G + Q+P V G + L ++ RA +
Sbjct: 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNI-----RAEAQ 132
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA--- 1412
D + + LD ++ + FS G +Q L ++R L+ R +++ +DE T +DV A
Sbjct: 133 DWLEEVEIDLD-RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
Query: 1413 -LIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 1453
L++ +RE ++I+ H L + DR++++ G+V+E
Sbjct: 192 DLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------AMLGELPPVSDASA--- 675
++ L +IN+ I + A++G +G GK++ + A + L +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 676 ---VIRGTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDL 723
+R V V Q +F ++ +NI + E A + L ++
Sbjct: 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 783
++ + + +SGGQ+QR+ +ARA+ + + D+P SALD + V +
Sbjct: 133 K-------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEEL 184
Query: 784 IRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
++ + ++VT+ + +V D H G + E G ++ N
Sbjct: 185 LKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA----------------- 675
++++D P S+ AI+G +G GK++++ ++ + +L P + +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 676 VIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
IR V V Q F A ++ DN++ G R ++ ++ L + D E+
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-GRVNRSEADEIVESSLKRVALWD--EV 138
Query: 735 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
+R + +SGGQ+QR+ +AR + +V + D+P SALD
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 45/245 (18%)
Query: 613 PAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAM----- 663
A+ +RN F D +A L +I++ IP + A +G +G GK++L + M
Sbjct: 24 TALEVRNLNLFYGDKQA----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVD 79
Query: 664 ----LGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEK 712
GE+ + D A +R V V Q F ++ +N+++G + +
Sbjct: 80 NCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRR 139
Query: 713 AIDVT--------SLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 763
+D +L ++ D L E +SGGQ+QR+ +ARA+ +V +
Sbjct: 140 VLDEAVERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLL 191
Query: 764 FDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
D+P SALD + + I EL K T V+VT+ + ++V D ++ G + E G
Sbjct: 192 LDEPTSALDP-ISTLKIEELI-TELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249
Query: 822 TFEDL 826
+ L
Sbjct: 250 DTDTL 254
|
Length = 272 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--------VAYV 684
L ++NL + G + A++G G GK++L+ + G P + I +A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK-GTITINNINYNKLDHKLAAQ 79
Query: 685 PQVSWIFNA-------TVRDNILFGS--------------AFEPARYEKAIDVTSLQHDL 723
+ I+ TV +N+ G R + L+ DL
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-- 781
D N+S KQ + +A+ + ++ V I D+P S+L +F
Sbjct: 140 DEKVA-----------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 782 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840
+R E G V ++++L + ++ DR ++ +G G D+SN+ + +LM
Sbjct: 189 NQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIV--RLMVGR 244
Query: 841 GKMEEYVEEKEDGETVDNKT 860
+ KE+ + ++T
Sbjct: 245 ELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 38/223 (17%)
Query: 1253 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA------- 1305
P + +SF++ + VG+ G GAG+S ++ L+ G++ +DG I
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 1306 -KFGLM----DLRKILGIIPQSPV----------LFSGTVRFNLDPFSEHSDADLWEALE 1350
+ G+M D RK GIIP V ++ E +AD + +
Sbjct: 326 IRAGIMLCPED-RKAEGIIPVHSVADNINISARRHHL-RAGCLINNRWEAENADRF--IR 381
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
++K R + N S G +Q L R L K+++LDE T +DV
Sbjct: 382 SLNIKTPSREQLIM----------NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
Query: 1411 DALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 1451
I I E +L ++ L ++ DRI+++ GR+
Sbjct: 432 KHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 51/204 (25%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDLR 1313
L+ +S + P ++G +GAGK+++L+ L + + G ILI+G + K + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NFQ 78
Query: 1314 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1372
+ G + Q V TVR EAL +R GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVR---------------EALR---FSALLR----GL------- 109
Query: 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-----CTM 1427
SV QR+ L++ L + IL LDE T+ +D + I + +++ S CT+
Sbjct: 110 ----SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165
Query: 1428 LIIAHRLNTII--DCDRILLLDSG 1449
H+ + I DR+LLL G
Sbjct: 166 ----HQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVI------------- 677
L I+++I S+VA +G +G GK++ + + +L P + I
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 678 ----RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 725
R V V Q F ++ +N+ +G +AF R E+ + +L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 726 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
++ E +SGGQ+QR+ +ARA+ + V + D+P SALD
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
|
Length = 250 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV------A 682
E L I+ I G +V +G G GKT+ + + G L P S + G V
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS-GEVRVAGLVPWKRRKK 91
Query: 683 YVPQVSWIF--------NATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDV 731
++ ++ +F + V D+ +A PAR++K +D S +LL ++
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----ELLDLEEL 146
Query: 732 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 791
+ R +S GQ+ R +A A+ ++ D+P LD + +
Sbjct: 147 LDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 792 TRVLVTNQLHFLSQV----DRIILVHEG 815
T VL+T+ H++ + R++++ +G
Sbjct: 205 TTVLLTS--HYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 40/243 (16%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 1310
V+ L+ TI V ++G +G GK+ T+ R+V LE+ G+I IDG D+ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 1311 DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 1365
R I ++ QS LF V + L + E +R +K+A+
Sbjct: 77 Q-RDIC-MVFQSYALFPHMSLGENVGYGLKMLGVPKE----ERKQR--VKEAL------- 121
Query: 1366 DAQVSEAG------ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419
V AG + S GQ+Q ++L+RAL+ + K+L+ DE + +D +++ IR
Sbjct: 122 -ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180
Query: 1420 EEFKS--CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1476
E + T L + H + D +++++ G++++ +P+EL S F M G
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF--MASFMG 238
Query: 1477 AAN 1479
AN
Sbjct: 239 DAN 241
|
Length = 351 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------- 1306
P + +SF + + +GI G GA ++ ++ TLF I E G I + G I
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321
Query: 1307 ---FGLM-DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK------- 1355
F L+ + R+ GI + F+ + N+ + L+ + +K
Sbjct: 322 NHGFALVTEERRSTGIYAYLDIGFNSLIS-NIRNYKNK-----VGLLDNSRMKSDTQWVI 375
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
D++R + G Q+ + S G +Q + + R LL + +IL+LDE T +DV I
Sbjct: 376 DSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431
Query: 1416 KTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 1451
+ I E K ++II+ + ++ DRIL++ +G V
Sbjct: 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 1324
P + + IVG G+GK+++ L R + G +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------- 33
Query: 1325 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384
+ + + E L + V + S R L
Sbjct: 34 -----IYIDGEDILEEVLDQLLLII-------------------VGGKKASGSGELRLRL 69
Query: 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEFKSCTMLIIAHRLNTI 1437
+L+ A + +L+LDE T+ +D +AL+ + K+ T+++ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 1438 IDCDRILLLDSGRVLEYDTPE 1458
+L R +
Sbjct: 130 G--PALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-05
Identities = 51/259 (19%), Positives = 111/259 (42%), Gaps = 22/259 (8%)
Query: 1218 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 1277
+ + + ++ R R L L +S P + + ++G +GA
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHL---LKNVSGVAKPGELLAVMGSSGA 62
Query: 1278 GKSSMLNTL-FRIVE-LER-GRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFN 1333
GK++++N L FR + ++ G +L++G ++R I + Q + + TVR +
Sbjct: 63 GKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQDDLFIPTLTVREH 119
Query: 1334 LDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-----ENFSVGQRQLLSL 1386
L F H + + +R + + ++ L + G + S G+R+ L+
Sbjct: 120 LM-FQAHLRMPRRVTKKEKRERVDEVLQALGL-RKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIIDC--DRI 1443
+ LL +L DE T+ +D + + ++ K T++ H+ ++ + D+I
Sbjct: 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKI 237
Query: 1444 LLLDSGRVLEYDTPEELLS 1462
+L+ GRV +P++ +
Sbjct: 238 ILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
Query: 1270 GIVGRTGAGKSSMLNTLFRIVELE-----RGRILI--DGFDIAKFGL--MDLRKILGIIP 1320
++G +G GKS+ L R+ +L G I++ D +I + +++R + ++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 1321 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSEAGENFSV 1378
Q P F ++ N+ + ++ +++A+R +L + ++ + N S
Sbjct: 106 QKPNPFPKSIFENV-AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164
Query: 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1434
GQ+Q L ++RAL +IL+ DE T+A+D A I++ I + T+LI+ H +
Sbjct: 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 13/203 (6%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 1317
+S + + +G+ G GAG++ + TL+ + GRI+++G +I L + L
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 1318 IIP---QSPVLF-SGTVRFNLDPFSEHSDADLW--EALERAHLKDAIRRNSLGLD-AQVS 1370
+P QS L+ + +N+ + H+ W A E A L + RR +L +
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALT-HNRRGFWIKPARENAVL-ERYRR-ALNIKFNHAE 398
Query: 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT-MLI 1429
+A S G +Q + +++ L ++L++DE T VDV I + IR +L
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 1430 IAHRLNTIID-CDRILLLDSGRV 1451
I+ L I DR+L++ G +
Sbjct: 459 ISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 1238 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
I ++V Y+ P L ++ TI +G TG+GKS+++ L + +
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 1295 GRILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 1348
G + +D I + +RK +G++ Q P LF TV ++ ++ EA
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
A K A+ +G+ + E S GQ + ++++ L KILVLDE TA +D
Sbjct: 122 EALAREKLAL----VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 1408 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
+ +K + FK T++++ H ++ + + D + +L+ G+++ P+++
Sbjct: 178 PKG----RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-05
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 46/189 (24%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------------ 1301
P+L I +++V +VGR GAGKS+++ L V L+ GRI+ +
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76
Query: 1302 -------FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD------ADLWEA 1348
+D G+ + + L L ++ S+ A L E
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE----------TDPSEKNLNELAKLQEQ 126
Query: 1349 LERA---HLKDAIRRN--SLGLDA--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
L+ L++ I LGLD +S S G + +L RAL+ +L+LDE
Sbjct: 127 LDHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDE 182
Query: 1402 ATAAVDVRT 1410
T +D+ T
Sbjct: 183 PTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 6e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 719 LQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
L HD + LP T +G +SGGQKQR+S+ARA+ N + I D+ S+LD
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 687
+ L +NL I G + A++G G GK++L ++G P V G + + +
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYE----VTEGEILFKGED 65
Query: 688 SWIFNATVRDNILFG--SAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--IS 742
I + + G AF P V + D L R VN S
Sbjct: 66 --ITDLPPEERARLGIFLAFQYPPEIP---GVKNA----DFL----------RYVNEGFS 106
Query: 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 800
GG+K+R + + + D+ I D+P S LD R V + +R E GK+ +++T+
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQ 164
Query: 801 HFLSQV--DRIILVHEGMVKEEGTFE 824
L + DR+ ++++G + + G E
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
V+ L TI + + ++G +G GK+++L + + GRI++DG DI +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAEN 85
Query: 1314 KILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLG 1364
+ + + QS LF TV N+ P +E + EAL L++ +R
Sbjct: 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE-ITPRVMEALRMVQLEEFAQRKPHQ 144
Query: 1365 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1424
L S GQ+Q ++++RA++ + K+L+LDE+ +A+D + ++K ++ E K+
Sbjct: 145 L-----------SGGQQQRVAIARAVVNKPKVLLLDESLSALDYK----LRKQMQNELKA 189
Query: 1425 ------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEE 1459
T + + H + + DRI+++ GR+ + TP E
Sbjct: 190 LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 7e-05
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLI---SAMLGELPPVSDASAV------------- 676
L I+LD L A++G +G GK++ + + M ++ + +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 677 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 730
+R V V Q F +V DN+ +G + ++ ID SL+ D
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 790
+ SGGQ+QR+ +ARA+ V + D+P SALD ++ + + EL
Sbjct: 140 --NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM--ELKH 195
Query: 791 K-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 826
+ T ++VT+ L ++ D+ + G + E G E++
Sbjct: 196 QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 7e-05
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 51/193 (26%)
Query: 637 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-----VSDAS--AVI---RGT----- 680
L IP G + I+G G GKT+ + + GEL P + S V+ RGT
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151
Query: 681 ----------VA----YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 726
V YV + +F VR+ L E + ++ ++ L++ LD
Sbjct: 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGLENILD-- 207
Query: 727 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RC 783
R + +SGG+ QRV++A A+ ++D + FD+P S LD RQ + R
Sbjct: 208 ----------RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI---RQRLNVARL 254
Query: 784 IRGELSGKTRVLV 796
IR EL+ VLV
Sbjct: 255 IR-ELAEGKYVLV 266
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-05
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 45/237 (18%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-------------- 1287
E+VV RY L+ L T P VGI+G G GKS+ L L
Sbjct: 78 EEVVHRYGVN-GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Query: 1288 ---RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSD 1342
+++ RG L + F G +LR + + P + G V
Sbjct: 136 SWDEVIKRFRGTELQNYFKKLYEG--ELRAVHKPQYVDLIPKVVKGKVG----------- 182
Query: 1343 ADLWEAL-ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
+L + + ER + + R LGL+ + S G+ Q ++++ ALLR + + DE
Sbjct: 183 -ELLKKVDERGKFDEVVER--LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE 239
Query: 1402 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457
++ +D+R + IRE + ++++ H L ++D L D +L Y P
Sbjct: 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLD----YLSDFVHIL-YGEP 290
|
Length = 591 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 51/197 (25%)
Query: 643 GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT------------ 680
G ++ +VG G GK++ + + G+L P D ++ RG+
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 681 -------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
YV + V + L E + ++ +D L+H LD
Sbjct: 86 DVKVIVKPQYVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD--------- 134
Query: 734 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 790
R + +SGG+ QRV++A A+ ++D + FD+P S LD +Q + R IR
Sbjct: 135 ---RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI---KQRLNAARLIRELAED 188
Query: 791 KTRVLVTNQLHFLSQVD 807
VLV H L+ +D
Sbjct: 189 DNYVLVVE--HDLAVLD 203
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-05
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 41/203 (20%)
Query: 1271 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--LRKILGIIPQSPV-LFS 1327
++G +GAGK+++LN L E ++ G + +D ++ +G + Q + L +
Sbjct: 794 LMGASGAGKTTLLNVL---AERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850
Query: 1328 GTVRFNLD-----------PFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374
TVR +L SE + ++ + LE DA+ V GE
Sbjct: 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV----------VGVPGE 900
Query: 1375 NFSVGQRQLLSLSRALLRRSKILV-LDEATAAVDVRTDALIQKTIREEFKS-----CTML 1428
+V QR+ L++ L+ + K+L+ LDE T+ +D +T I K +R+ CT+
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI- 959
Query: 1429 IIAHRLNTII--DCDRILLLDSG 1449
H+ + I+ + DR+LLL G
Sbjct: 960 ---HQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-04
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKV-GIVGRTGAGKSSMLNTLF------------- 1287
E+ V RY L+GL IP KV GI+G G GK++ + L
Sbjct: 77 EEPVHRYGVN-GFKLYGLP--IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEE 133
Query: 1288 ----RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHS 1341
+++ RG L + F G +++ + + P +F G VR
Sbjct: 134 PSWDEVLKRFRGTELQNYFKKLYNG--EIKVVHKPQYVDLIPKVFKGKVR---------- 181
Query: 1342 DADLWE-ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400
+L + ER L + + R LGL+ + S G+ Q ++++ ALLR + D
Sbjct: 182 --ELLKKVDERGKLDEVVER--LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
Query: 1401 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1439
E T+ +D+R + + IRE + +L++ H L ++D
Sbjct: 238 EPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL-AVLD 275
|
Length = 590 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 1311
+L G+ + + + ++G +G+GKS++L L + + G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1312 LR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS-------- 1362
LR K +G + QS F L P ALE L +R S
Sbjct: 85 LRAKHVGFVFQS---------FMLIP--------TLNALENVELPALLRGESSRQSRNGA 127
Query: 1363 ------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
LGL ++ S G++Q ++L+RA R +L DE T +D +T I
Sbjct: 128 KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
Query: 1417 ---TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
++ E + T++++ H L CDR L L +G++ E
Sbjct: 188 LLFSLNREHGT-TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 44/229 (19%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA--------------- 675
L +NL+IP ++ A++G +G GK++L+ L EL P + S
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 676 VIRGTVAYVPQV-SWIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 725
+R V V Q+ + I N ++ +N+ G R A++ L ++
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK- 137
Query: 726 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
+ +SGGQ+QR+ +ARA+ +V + D+P + LD ++ +
Sbjct: 138 ------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI--ESLF 189
Query: 786 GELSGK-TRVLVTNQLHFLSQVDRI----ILVHEGMVKEEGTFEDLSNN 829
EL T VLVT HF Q RI +++G + E G ++ N
Sbjct: 190 LELKKDMTIVLVT---HFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 38/226 (16%)
Query: 636 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVP------ 685
++L IP + A++G +G GK++L+ L EL + +R G Y P
Sbjct: 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82
Query: 686 ---QVSWIF-------NATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDLL 726
+V +F + T+ DN+ G R E A+ +L ++
Sbjct: 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-- 140
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 786
+ + N+SGGQ+QR+ +ARA+ + + D+P + +D VG + +
Sbjct: 141 -----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFE 194
Query: 787 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE 831
T VLVT+ ++V D + ++ G + E G + N E
Sbjct: 195 LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
Length = 253 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 78/229 (34%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TV--AYVPQVSWIF 691
+++ +P G +V ++G G GK++L + G+ P D+ + G TV AYV Q
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGETVKLAYVDQ----- 392
Query: 692 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--------- 740
RD + +P + +E+ G D+ ++G+R V
Sbjct: 393 ---SRDAL------DPNKTVWEEISG------------GLDIIQLGKREVPSRAYVGRFN 431
Query: 741 ------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR------QVFDR 782
+SGG++ RV +A+ + S +V + D+P + LD R F
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491
Query: 783 CIRGELSGKTRVLVTNQLHFLSQVDRI---ILVHEG---MVKEEGTFED 825
C V++++ FL DRI IL EG + EG + +
Sbjct: 492 CA---------VVISHDRWFL---DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 40/267 (14%)
Query: 602 LLPNPPLTSGLPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
L P+ P G + RN WD R + +++ + G ++ + G G G+T L+
Sbjct: 245 LYPHEPHEIGDVILEARN-LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV 303
Query: 661 SAMLGELPPVSDASA--------------VIRGTVAYVPQ------------VSWIFNAT 694
A+ G P + + IR +A VP+ V +
Sbjct: 304 QALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363
Query: 695 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754
V + F + A + I +++Q L + IG +SGG +Q+ +A+
Sbjct: 364 VLKSFCFKMRIDAAAELQIIG-SAIQR-LKVKTASPFLPIG----RLSGGNQQKAVLAKM 417
Query: 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDRIILVH 813
+ +N V I D+P +D +++ + G ++V+++L L DR++++
Sbjct: 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477
Query: 814 EGMVKEEGTFEDLSNNGELFQKLMENA 840
EG +K D N+ ++++ A
Sbjct: 478 EGKLK-----GDFVNHALTQEQVLAAA 499
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 49/207 (23%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--------------PVSDAS 674
+ P L + + + G +V ++G G G ++L+ A+ P + +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 675 AVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
G + YV + F TVR+ + F + G +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK-------GNEFV- 116
Query: 734 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 793
RG ISGG+++RVS+A A+ S + V +D+ LD+ + +CIR ++ +
Sbjct: 117 ---RG--ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALE-ILKCIR-TMADVLK 169
Query: 794 VLVTNQLH-----FLSQVDRIILVHEG 815
L+ D++++++EG
Sbjct: 170 TTTFVSLYQASDEIYDLFDKVLVLYEG 196
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQ 799
+SGG++QRV++ARA DV D+P LD G ++ D G T +LVT+
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
Query: 800 LHFLSQVDRIILVHEGMVKEE 820
L ++ DR + + G ++EE
Sbjct: 207 LQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-04
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 643 GSLVAIVGGTGEGKTSLISAMLGE--------------LPPVSDASAVIRG----TVAYV 684
G L A++G +G GKT+L+ + G P + A I G +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 685 PQVSWIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 739
PQV TVR+++++ SAF E ++ EK + V + ++L D +G GV
Sbjct: 966 PQV------TVRESLIY-SAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI-VGLPGV 1017
Query: 740 N-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 797
+S Q++R+++A + +N + D+P S LDA V R +R + +G+T V
Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTI 1076
Query: 798 NQ 799
+Q
Sbjct: 1077 HQ 1078
|
Length = 1470 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASAVIRGTVA 682
N+ ++IP G AI+G G GK++L+ + + P AS + +
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84
Query: 683 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHDLDLLPGG----DVTEIGER 737
+ Q NAT +I RY T + D + + +T + ++
Sbjct: 85 LLAQ-----NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139
Query: 738 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 796
V+ +SGGQ+QR +A + + + + D+P + LD + Q+ + EL+ + +
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQIDLLELLSELNREKGYTL 197
Query: 797 TNQLHFLSQVDR----IILVHEGMVKEEG 821
LH L+Q R +I + EG + +G
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 44/163 (26%)
Query: 643 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 702
G ++ IVG G GKT+L A+ EL P I G + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL---------- 51
Query: 703 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 762
+G + + SG + R+++A A DV
Sbjct: 52 -----------------------------IIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 763 IFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQL 800
I D+ S LDA + L V++T
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-04
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 640 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDN 698
I G ++ IVG G GKT+ + G L P ++Y PQ + ++ TV D
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE-GEVDPELKISYKPQYIKPDYDGTVED- 419
Query: 699 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYS 757
L S D+ S + +++ + + ++ V +SGG+ QRV++A +
Sbjct: 420 -LLRSI--------TDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 758 NSDVFIFDDPLSALD 772
++D+++ D+P + LD
Sbjct: 471 DADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 1374 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAH 1432
E S G++ L+L++ LL +L+LDE T +D+ + +AL + ++ E+ T+++++H
Sbjct: 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALK-EYP-GTVILVSH 125
Query: 1433 -R--LNTIIDCDRILLLDSGR 1450
R L+ + +I+ L+ G+
Sbjct: 126 DRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 1262 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 1321
+I S+ +GI+G G GK++ + L +++ + G I I+ ++ K I
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-------YKPQYIKAD 73
Query: 1322 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381
+ GTVR D S + + + ++ + LD +V E S G+
Sbjct: 74 ----YEGTVR---DLLSSITKDFYTHPYFKTEIAKPLQIEQI-LDREVPE----LSGGEL 121
Query: 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 1432
Q ++++ L + + I +LDE +A +DV + K IR E T ++ H
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVP 685
A +P + ++L + G ++A+VGG+G GK+ +A LG LP +A V+ P
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 686 -QVSWIFNATVRDNILFGSAFEPAR------------YEKAIDVTSLQHDLDLLPGGDVT 732
+ AT+ N SAF P K D +L L+ + +
Sbjct: 74 CALRGRKIATIMQNPR--SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 733 EIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
+ + +SGG QR+ +A A+ + I D+P + LD ++ D
Sbjct: 132 RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
|
Length = 254 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 64/231 (27%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 694
+++ D+ G ++ IVG +G GKT+L+ + G L P + GTV Y
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA-------GTVTYR-------MRD 69
Query: 695 VRDNILFGSAFEP-----ARYEKAIDVTSLQHDLDLL-----PGGDVTE----IGER--- 737
+ L+ + E R E Q+ D L GG++ E IG R
Sbjct: 70 GQPRDLYTMS-EAERRRLLRTEWGF---VHQNPRDGLRMQVSAGGNIGERLMAIGARHYG 125
Query: 738 -----------GVNI------------SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
V I SGG +QR+ +AR + + + D+P LD
Sbjct: 126 NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 185
Query: 775 VGRQVFDRCIRG---ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
V ++ D +RG EL G V+VT+ L + DR++++ +G V E G
Sbjct: 186 VQARLLD-LLRGLVREL-GLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 1271 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 1330
+VG GAGKS++L + + G I G + + +L + + Q
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAYLSQQ-------- 80
Query: 1331 RFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383
PF+ +W L R L + + +L LD ++ + S G+ Q
Sbjct: 81 --QTPPFAMP----VWHYLTLHQPDKTRTELLNDVA-GALALDDKLGRSTNQLSGGEWQR 133
Query: 1384 LSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA-HRLN 1435
+ L+ +L+ ++L+LDE ++DV + + + + + ++++ H LN
Sbjct: 134 VRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193
Query: 1436 -TIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
T+ R LL G++L EE+L+
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG-----FDIAKFGLM 1310
+SF + P + +GIVG +G+GK+++LN L + + G + D+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1311 DLRKIL----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 1359
+ R++L G + Q P V G + L D+ RA D +
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI-----RATAGDWLE 136
Query: 1360 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQ 1415
R + ++ + FS G +Q L ++R L+ +++ +DE T +DV A L++
Sbjct: 137 RVEIDAA-RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 1416 KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 1453
+RE ++I+ H L + R+L++ GRV+E
Sbjct: 196 GLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
Length = 258 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 799
SGGQ QR+ +ARA+ + I D+P+SALD + QV + + ++ E+ G + + +
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIA-- 219
Query: 800 LHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 829
H L+ V DR+++++ G E GT++++ +N
Sbjct: 220 -HDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
Length = 331 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-04
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 49/185 (26%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS 688
+ L +I+L G+ + ++G G GK++L+ M G + +A V Y+PQ
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77
Query: 689 WI-FNATVRDNILFG---------------SAF------------EPARYEKAIDVTSLQ 720
+ TVR+N+ G + F E A ++ ID
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA- 136
Query: 721 HDLDL----------LPGGD--VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 768
DLD P D VT +SGG+++RV++ R + S D+ + D+P
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVT-------KLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 769 SALDA 773
+ LDA
Sbjct: 190 NHLDA 194
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQ 799
+SGGQ+QR+ +ARA+ D+ + D+P SALD Q+ + EL T ++VT
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF--ELKKNYTIIIVT-- 219
Query: 800 LHFLSQVDRI 809
H + Q R
Sbjct: 220 -HNMQQAARA 228
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM---------------LGELPPVSDA 673
P L N++L + G VA+ G +G GK++L+ ++ G ++ A
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 674 S-----AVIRGTVAYV-------PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 721
S V R T+ YV P+VS + + G E AR + L
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSAL-EVVAEPLLERGVPREAARARARELLARLNI 138
Query: 722 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 773
L T SGG++QRV++AR ++ + + D+P ++LDA
Sbjct: 139 PERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVP 685
+R L +++L++ G ++ ++G G GK++L+ +LG + P D + R + YVP
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGKLRIGYVP 73
Query: 686 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE----IGERGVNI 741
Q ++ + T+ P + + + D+LP + I +
Sbjct: 74 QKLYL-DTTL-----------PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL 121
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC--IRGELSGKTRVLVTNQ 799
SGG+ QRV +ARA+ + + + D+P +D + ++D +R EL ++V++
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMVSHD 180
Query: 800 LH 801
LH
Sbjct: 181 LH 182
|
Length = 251 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 42/224 (18%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI----AKFGL 1309
P ++ +SFT+ + +G+ G GAG++ ++ L+ + G + +DG ++ + GL
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 1310 M-------DLRK----ILGIIPQSPVLFSGTVRFN-----LDPFSEHSDADLWEALERAH 1353
+ RK +LG+ +V+ N L FS + L A E+
Sbjct: 326 ANGIVYISEDRKRDGLVLGM----------SVKENMSLTALRYFS-RAGGSLKHADEQQA 374
Query: 1354 LKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
+ D IR ++ ++ + S G +Q ++++R L+ R K+L+LDE T VDV
Sbjct: 375 VSDFIRLFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Query: 1411 DALIQKTIREEFKSCTMLII--AHRLNTIID-CDRILLLDSGRV 1451
I + I +FK+ + II + + ++ DRIL++ GR+
Sbjct: 431 KKEIYQLI-NQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 7e-04
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 72/237 (30%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 1315
LSF P K+G++G GAGKS TL RI + G D G K+
Sbjct: 28 LSFF--PGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFEGEARPAPGIKV 72
Query: 1316 LGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--ERAHLK 1355
G +PQ P L TVR N LD F+E DAD +AL E+ L+
Sbjct: 73 -GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADF-DALAAEQGELQ 130
Query: 1356 DAI-RRNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKILVLDEA 1402
+ I ++ LD+Q+ A + S G+R+ ++L R LL + +L+LDE
Sbjct: 131 EIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
Query: 1403 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDSGR 1450
T +D + A +++ + ++ T++ + H DR IL LD GR
Sbjct: 191 TNHLDAESVAWLEQFLH-DYPG-TVVAVTH--------DRYFLDNVAGWILELDRGR 237
|
Length = 556 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-04
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 69/264 (26%)
Query: 1171 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP-SEAPLVIESNRP 1229
F G+L L T +L+ A +A+ L E++ ++LP + P
Sbjct: 200 DFVQFAGVLADCTLAETGEREEILQQALVAQ--LAHSEQLEG-VQLPEPDEPSARH--AL 254
Query: 1230 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 1289
P P I + V+ Y P+LH LS+ + P + IVG GAGKS++L+
Sbjct: 255 PANEPR---IVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLS----- 304
Query: 1290 VELERGRILIDG-------FDIAKFG--------LMDLRKILGIIPQSPVL---FSGTVR 1331
LI G D+ FG + D++K +G + S L S +VR
Sbjct: 305 --------LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVR 356
Query: 1332 -------------FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-ENFS 1377
+ + A W + LG+D + ++A + S
Sbjct: 357 NVILSGFFDSIGIYQAVSDRQQKLAQQWLDI-------------LGIDKRTADAPFHSLS 403
Query: 1378 VGQRQLLSLSRALLRRSKILVLDE 1401
GQ++L + RAL++ +L+LDE
Sbjct: 404 WGQQRLALIVRALVKHPTLLILDE 427
|
Length = 490 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 48/219 (21%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLM 1310
+ +S T+P I+G +G GK+++L + + + G IL DG +I ++ L
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 1311 DLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 1368
+RK + ++ QS LF+ V N+ P EH+ L L + + ++ ++GL
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTV--MMKLEAVGLRGA 136
Query: 1369 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CT 1426
S G + +L+RA+ +++ DE D T ++ K I E + T
Sbjct: 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVT 196
Query: 1427 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
++++H + ++ D ++ +++ + + + L +N
Sbjct: 197 CVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 8e-04
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 798
+SGG +QRV +A A+ V I D+P +ALD + Q+ + ++ E+S + +T+
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGV-IFITH 227
Query: 799 QLHFLSQV-DRIILVHEGMVKEEGTFEDL 826
+ ++++ DR++++++G E G+ E +
Sbjct: 228 DMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 595 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 654
++ E+ + P P + + + Y+ E+ + +I++DI ++ A++G +G
Sbjct: 4 MVREKIEIAPFPEAKEHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGC 58
Query: 655 GKTSLISAM--LGELPPVSDASAVI-----------------RGTVAYVPQVSWIFNATV 695
GK++ + ++ + +L P + + I R + V Q F ++
Sbjct: 59 GKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI 118
Query: 696 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSM 751
+NI + R + +D ++ L D E+ +R +++SGGQ+QR+ +
Sbjct: 119 YNNITHALKYAGERRKSVLD-EIVEESLTKAALWD--EVKDRLHSSALSLSGGQQQRLCI 175
Query: 752 ARAVYSNSDVFIFDDPLSALD 772
AR + V + D+P SALD
Sbjct: 176 ARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-------------------ELP 668
++ L +NL + G + AI+G G GK++L + G EL
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 669 PVSDASAVIRGTVAYVPQVSWIFNAT-VRDNILFGSAFEPARYEKAIDV----TSLQHDL 723
P A A + Y ++ + N +R + +A AR E+ +D+ L+ L
Sbjct: 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSAL---NARRSARGEEPLDLLDFLKLLKAKL 127
Query: 724 DLLPGGDVTEIGERGVNI--SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
LL G E R VN SGG+K+R + + + I D+ S LD + V +
Sbjct: 128 ALL--GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 782 RCIRGELSGKTR--VLVTNQLHFLSQV--DRIILVHEGMVKEEGTFE 824
I L R +++T+ L+ + D + ++ +G + + G E
Sbjct: 186 -GI-NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 31/176 (17%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
PV L F + + + + G GAGK+++L L ++ +E G+I IDG + D
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRS 81
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI--RR------NSL-- 1363
+ + + P L ADL LE H + RR ++L
Sbjct: 82 RFMAYLGHLPGL----------------KADL-STLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 1364 -GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418
GL S GQ++ L+L+R L + + +LDE A +D+ L+ + I
Sbjct: 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 58/239 (24%)
Query: 1197 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPP--PGWPSSGSIKFEDVVLRYRPELPP 1254
ASL ++ + A++R+G+ + ++ E P PG P I F D Y P P
Sbjct: 468 ASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGY-PGGPL 523
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
+ L+F I ++ +VG G GKS++L LI G +L+
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LISG---------ELQP 561
Query: 1315 ILGIIPQSPVLFSGTVRFNLDPFSEH--------SDADLW---------EALERAHLKDA 1357
G + +S VR + FS+H S+ L+ E RAHL
Sbjct: 562 SSGTVFRSA-----KVRMAV--FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 614
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ 1415
+L L + +G GQ+ ++ ++ ++ IL+LDE + +D+ +ALIQ
Sbjct: 615 GVTGNLALQPMYTLSG-----GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 799
+SGG +Q+V++AR + + V I D+P +D ++++ + + G + +LV+++
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Query: 800 L-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA-GK 842
+ L DRI+++HEG + E T E + +KLM A GK
Sbjct: 455 MPEVLGMSDRILVMHEGRISGEFTREQATQ-----EKLMAAAVGK 494
|
Length = 501 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 39/239 (16%)
Query: 631 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAVIR 678
+ +I+ +IP G +V +G G GK++ + + G L P S +R
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 679 --GTVAYVPQVSWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEI 734
G V W + + +E + + +D L LDL +
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD--FLTEILDLEG-----FL 150
Query: 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 794
+S GQ+ R +A A+ V D+P LD V Q R E + + +
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD--VNAQANIREFLKEYNEERQA 208
Query: 795 LVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 849
V H + DR++L+ +G + +GT +L E G +E+ E
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA----------QLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.003
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 781
SGGQ+QR+ +ARA+ N V I D+ +SALD + Q+ +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
|
Length = 623 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 62/230 (26%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---PQVSWIF 691
+++ D+ G ++ IVG +G GK++L+ + G L P GT Y+ ++
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH-------GTATYIMRSGAELELY 73
Query: 692 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL-----PGGDVTE----IGER----- 737
+ + R E V Q+ D L G ++ E IG R
Sbjct: 74 QLSEAERRRL------MRTEWGF-VH--QNPRDGLRMRVSAGANIGERLMAIGARHYGNI 124
Query: 738 ---------GVNI------------SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
V I SGG +QR+ +AR + + + D+P LD V
Sbjct: 125 RATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 184
Query: 777 RQVFDRCIRGELS--GKTRVLVTNQL---HFLSQVDRIILVHEGMVKEEG 821
++ D +RG + G ++VT+ L L+Q R++++ +G V E G
Sbjct: 185 ARLLD-LLRGLVRDLGLAVIIVTHDLGVARLLAQ--RLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS--- 674
A L ++ ++ G ++ +VG G GK++L++ M G LP P+ S
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAE 66
Query: 675 -AVIRGTVAYVPQVSWIFNATVRDNI-LFGSA-FEPARYEKAI-DVTSLQHDLDLLPGGD 730
A R ++ Q + F V + L A+ +V D L
Sbjct: 67 LARHRAYLS--QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG--- 121
Query: 731 VTEIGERGVN-ISGGQKQRVSMA-------RAVYSNSDVFIFDDPLSALDAHVGRQV-FD 781
R VN +SGG+ QRV +A + + + D+P+++LD V +Q D
Sbjct: 122 ------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALD 173
Query: 782 RCIRGELSGKTR-VLVTNQ-L-HFLSQVDRIILVHEG 815
R + EL + V++++ L H L DR+ L+ +G
Sbjct: 174 RLLS-ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
SGGQ+QR+++ARA+ + I D+P S+LD V Q+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
|
Length = 529 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1623 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-249 Score=2395.96 Aligned_cols=1241 Identities=50% Similarity=0.846 Sum_probs=1154.1
Q ss_pred CCCCccCch--hhHHHHHhHHHHHHhhccCCCCCCCCCCCCccccHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHH
Q 000351 226 ICPERQANI--FSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQR--PKPWLLRALNSSLGG 301 (1623)
Q Consensus 226 ~~pe~~a~~--~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~l~~~~~~~w~~~~~~--~~~~L~~al~~~~~~ 301 (1623)
+.|.+.++. +|+++|||++|++++|||++|+.+|+|+++++++++.+.++|++.|+++..+ ++|+++++++++|++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 344555555 9999999999999999999999999999999999999999999999998533 478999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 302 RFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQD-GPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAV 380 (1623)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i 380 (1623)
+++..++++++.+...|++|.+++.++++++++ .+.+.||.++++++++.++.+++.++|++..+++|+++|+++.++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999986 3477899999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000351 381 FRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFI 460 (1623)
Q Consensus 381 ~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~~~~~~ 460 (1623)
|+|+|+++...+++.+.|+++|+|++|++++.+++.++|.+|..|+|+++++++||.++|+++++|++++++++|++.++
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 461 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVV 540 (1623)
Q Consensus 461 ~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~~~~~~ 540 (1623)
+++++++|++.|+.+|+|++.++|+|+|||+||||+||+.|.++|++.|++|++.++|..++.+++.+++.++|++++++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--CCCCCCCcEEE
Q 000351 541 SFGMFT-LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPAISI 617 (1623)
Q Consensus 541 ~f~~~~-~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~--~~~~~~~~i~~ 617 (1623)
+|++|+ ..++.+++..+|+++++|++++.|+.++|..+.++.++.+|++|+++||..+|....... +..+.+..|++
T Consensus 442 tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i 521 (1381)
T KOG0054|consen 442 TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEI 521 (1381)
T ss_pred HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEE
Confidence 999999 678899999999999999999999999999999999999999999999999887543332 33445568999
Q ss_pred EeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcCcEEEEccCcccCcccHHH
Q 000351 618 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD 697 (1623)
Q Consensus 618 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~iay~~Q~~~l~~~Tv~e 697 (1623)
+|++|+|++++..+.|+||||+|++|+++||||++||||||||++|+||+++.+| .+.++|.+|||||+|||+|+||||
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG-~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSG-SVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred eeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccc-eEEEcCeEEEeccccHhhCCcHHH
Confidence 9999999975556799999999999999999999999999999999999999999 888999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHH
Q 000351 698 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 777 (1623)
Q Consensus 698 nI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~ 777 (1623)
||+||.|||+++|++|+++|+|++|++.+|.||+|+|||+|.||||||||||+||||+|+|+||||||||+||||+|+++
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHhhcchhhhhcccccCcccc
Q 000351 778 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVD 857 (1623)
Q Consensus 778 ~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1623)
|||++|+.+.+++||+|+|||++++|++||+|++|+||+|.++|+|+|+++.+..+.++..+........ .. .+ ...
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~-~~-~~-~~~ 757 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE-AS-EK-DLE 757 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc-cc-cc-ccc
Confidence 9999999999999999999999999999999999999999999999999998888888743222111110 00 00 000
Q ss_pred cCCCCCCCC-CCCCCCCcccccccccccchhhhhhHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 000351 858 NKTSKPAAN-GVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSS 936 (1623)
Q Consensus 858 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 936 (1623)
......... ..........+.....+..+.+..++|+++.|.++|++|+.|+++.+|++.+++++++.++.+++..+.+
T Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~ 837 (1381)
T KOG0054|consen 758 SGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASN 837 (1381)
T ss_pred ccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0000000000011112222455677888999999999999999998888888888999999999999999
Q ss_pred chhhhhcccCccCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhH
Q 000351 937 TWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 1013 (1623)
Q Consensus 937 ~wl~~w~~~~~~~~---~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~i 1013 (1623)
+||++|+++..... .+..+|+++|+++++++.++.+++++++...+.++|++||++|+++++|+||+|||+||+|||
T Consensus 838 ~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRI 917 (1381)
T KOG0054|consen 838 YWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRI 917 (1381)
T ss_pred HHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccch
Confidence 99999998875443 467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 000351 1014 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 1093 (1623)
Q Consensus 1014 lnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~ 1093 (1623)
+||||+|++.+|..+|..+..++..++.+++++++++++.|+++++++|+.+++|.++++|.+++|+++|+++.+|||+|
T Consensus 918 LNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~ 997 (1381)
T KOG0054|consen 918 LNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIY 997 (1381)
T ss_pred hhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccchhhH
Q 000351 1094 AQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS-AENQEAF 1172 (1623)
Q Consensus 1094 ~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~-~~~~~~~ 1172 (1623)
+||+|++.|+.|||||+++++|.+++.+++|.++++.|....++||+++|+|+++++++++++.+++..... .+
T Consensus 998 sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~----- 1072 (1381)
T KOG0054|consen 998 SHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLIS----- 1072 (1381)
T ss_pred HhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999987766 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCC
Q 000351 1173 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL 1252 (1623)
Q Consensus 1173 ~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~ 1252 (1623)
+|.+|++++|++++++.++++++..+++|+.|+||||+.+|.++|+|.|...+...||++||.+|.|+|+|++++|+|+.
T Consensus 1073 ~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~l 1152 (1381)
T KOG0054|consen 1073 PGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNL 1152 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999766666666899999999999999999999999
Q ss_pred CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHh
Q 000351 1253 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 1332 (1623)
Q Consensus 1253 ~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~ 1332 (1623)
|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++++++||+++++|||||+||+||||+
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~ 1232 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRF 1232 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHH
Q 000351 1333 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412 (1623)
Q Consensus 1333 NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~ 1412 (1623)
||||+++++|++||+|||+|+|+++|+++|.|||+.|.|+|.|||.||||++||||||||++|||+||||||++|++||.
T Consensus 1233 NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1233 NLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred ccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHHh
Q 000351 1413 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1475 (1623)
Q Consensus 1413 ~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~~ 1475 (1623)
.||++||+.|++||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.+.
T Consensus 1313 lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1313 LIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred HHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999776543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-236 Score=2417.04 Aligned_cols=1618 Identities=83% Similarity=1.302 Sum_probs=1381.6
Q ss_pred CCccccccccCCCCCCCccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHH
Q 000351 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKDFKVQRFCLKSKLYNYMLGFL 80 (1623)
Q Consensus 1 ~~~~~~~~~c~~~~~~~~~~~~~~~fg~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (1623)
|||+|++++|+|+++++|++.++++|+|++|||+++++.++|++++++++++++|.+.++.+...+..+..+....+.++
T Consensus 1 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1622)
T PLN03130 1 MGFEPLDWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALL 80 (1622)
T ss_pred CcchhhhhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHH
Confidence 99999999999988789999888889999999999999999999999999999998854222222221112223333344
Q ss_pred HHHHhhHHHHHHHHHHhhcccCCCCCCccHH---HHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHH
Q 000351 81 AAYCTAEPLFQLIMGISALDLDGQSGLAPFE---ILSLIIEALCWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAV 157 (1623)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1623)
.++++...++..+..++..+.++.....+.. ++..++..++++++..+.+.+|.++.+++.. +.+.|++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (1622)
T PLN03130 81 AAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVR---FAVIYVLVGDAV 157 (1622)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcce---eehhHHHhhHHH
Confidence 4444444444333322222222221112222 4444555555555555566667766665542 222222332333
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccccccccccccCCCCCCCCCCccCchhhH
Q 000351 158 MVNLILSVKNFYNSSVLYLYMSEVIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSR 237 (1623)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 237 (1623)
.....+.....+.......+...+++...++++++++++...+++.|++...+...+.+|++.+..++.+||+++|+|||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 237 (1622)
T PLN03130 158 MLNLVLSVKEYYSSFVLYLYISEVAAQVLFGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSR 237 (1622)
T ss_pred HHHHHHHHHHHHhccccceehhHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHH
Confidence 33333333333222111123333444444555554557766666666543333222335666667778899999999999
Q ss_pred HHHHhHHHHHHhhccCCCCCCCCCCCCccccHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 238 IFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLGGRFWWGGFWKIGNDLSQ 317 (1623)
Q Consensus 238 ~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~l~~~~~~~w~~~~~~~~~~L~~al~~~~~~~~~~~~~~~l~~~~~~ 317 (1623)
++|+|++|++++|||++|+.+|||+++++++++.+.++|++.|+++.++++|+|+++++++|++.++.+++++++..++.
T Consensus 238 ~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 238 IFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCCH
Q 000351 318 FVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFAS 397 (1623)
Q Consensus 318 ~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~ 397 (1623)
+++|++++.+++++.+++..+.++.++++++++.++.+++.++|.+...+++.++|+.++..+|+|+++++....++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999765545667877777777777777888888888999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 398 GKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDK 477 (1623)
Q Consensus 398 g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 477 (1623)
|+++|+|++|++++++++..+|.+|..|++++++++++|..+|+++++|++++++++|++.++.+++++.++++++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Q 000351 478 RIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARA 557 (1623)
Q Consensus 478 r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ 557 (1623)
|.+.++|+++|||+||+||||+.+.+++++.|++|++..++..++..+..+++...|.++.+++|++|.+.++.+|++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999888888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCccccce
Q 000351 558 FTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNIN 637 (1623)
Q Consensus 558 ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~is 637 (1623)
|+++++++.+..|+..+|..+..+.++.+|++||++|++.++....+.++.......|+++|++|+|+++.++++|+|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~in 637 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNIN 637 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeecee
Confidence 99999999999999999999999999999999999999876543222111112234699999999998544578999999
Q ss_pred eEecCCcEEEEEcCCCCChhHHHHHHcCCccCCC-CCeEEEcCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHH
Q 000351 638 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 716 (1623)
Q Consensus 638 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~-g~~~~~~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~ 716 (1623)
|+|++|++++|+||+|||||||+++|+|+++|++ | .+.++++||||+|+||||++||||||+||+++|+++|++++++
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG-~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a 716 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA-SVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDV 716 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc-eEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999 6 7788999999999999999999999999999999999999999
Q ss_pred hCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEE
Q 000351 717 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 796 (1623)
Q Consensus 717 ~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilv 796 (1623)
|+|.+|++.+|+||+|.|||+|.+|||||||||+||||+|++||||||||||||||++++++|+++++++.++|+|+|+|
T Consensus 717 ~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlV 796 (1622)
T PLN03130 717 TALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLV 796 (1622)
T ss_pred hCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887889999999
Q ss_pred cCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCccc
Q 000351 797 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 876 (1623)
Q Consensus 797 tH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1623)
||++++++.||+|++|++|+|+++|++++++++.+.|.++.......++..++..+. ........+.........+...
T Consensus 797 TH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 875 (1622)
T PLN03130 797 TNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEE-EDDQTSSKPVANGNANNLKKDS 875 (1622)
T ss_pred ECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccc-cccccccccccccccccccccc
Confidence 999999999999999999999999999999988888888776543221111100000 0000000000000000000000
Q ss_pred ccccccccchhhhhhHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHH
Q 000351 877 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 956 (1623)
Q Consensus 877 ~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~ 956 (1623)
...+..+..+....++|+++.|.+++++|++|+++.|+++.++++++++++.+++..++++|+++|++..........+|
T Consensus 876 ~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~ 955 (1622)
T PLN03130 876 SSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFY 955 (1622)
T ss_pred cccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHH
Confidence 00000111122345677888999999999999999888777777777888889999999999999998654333445678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHH
Q 000351 957 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 1036 (1623)
Q Consensus 957 ~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~ 1036 (1623)
+++|++++++..++.+++.+++...+.++++++|++++++++++|++||+++|+|+|+|||++|++.+|..++..+..++
T Consensus 956 ~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~ 1035 (1622)
T PLN03130 956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFL 1035 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHH
Q 000351 1037 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 1116 (1623)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~ 1116 (1623)
..++.+++.++++++.+++..++++|++++++.++.+|.+++|++++.+..+++|+++++.|+++|+.|||+|+++++|.
T Consensus 1036 ~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~ 1115 (1622)
T PLN03130 1036 GQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 1115 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHH
Confidence 99999999999999999988888899988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1117 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 1196 (1623)
Q Consensus 1117 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~ 1196 (1623)
+.+.+..|.+++..+.....++|+++++++++++++++++.+.+...+.......+++.+|++++|++.+...+.++.+.
T Consensus 1116 ~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~ 1195 (1622)
T PLN03130 1116 EINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRL 1195 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777776666554433333445788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCC
Q 000351 1197 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 1276 (1623)
Q Consensus 1197 ~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsG 1276 (1623)
+..+++.+.|++|+.++.+.|+|.+...+...+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||
T Consensus 1196 ~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSG 1275 (1622)
T PLN03130 1196 ASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTG 1275 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCC
Confidence 99999999999999999998888654334445567899999999999999998777789999999999999999999999
Q ss_pred CChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHH
Q 000351 1277 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 1356 (1623)
Q Consensus 1277 SGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~ 1356 (1623)
||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||+++++++
T Consensus 1276 SGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~ 1355 (1622)
T PLN03130 1276 AGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKD 1355 (1622)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 000351 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1436 (1623)
Q Consensus 1357 ~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~t 1436 (1623)
+|+++|.||||.++|+|.+|||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|
T Consensus 1356 ~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t 1435 (1622)
T PLN03130 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1435 (1622)
T ss_pred HHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHHhhhhhHHHHHHHhhcccchhhhhhhhhhcccchhhhhcchhH
Q 000351 1437 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWA 1516 (1623)
Q Consensus 1437 i~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1516 (1623)
+++||||+||++|+|+|+|+|+||+++++|.|++|++.+|..+.+.++..+.+.+.+....++.+..+.+.++.+..+|+
T Consensus 1436 I~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1515 (1622)
T PLN03130 1436 IIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWA 1515 (1622)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHHhccccccccccchhcccchhhHHHhhhcc
Confidence 99999999999999999999999999878999999999998877777766533222223334445577888888888999
Q ss_pred HHHHHhhhhhcccccccchhhhhhhhhhhhhhchhhhhhhhhhcccchhhHHHHhhccCccCchhhHHHHHHHHhhhhhh
Q 000351 1517 AAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVM 1596 (1623)
Q Consensus 1517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1596 (1623)
..++++.+.++++++++++..++++...+++++|+++.++..+..+.|++.+.+.+.++++++|+||+++|+|+||+++|
T Consensus 1516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1595 (1622)
T PLN03130 1516 AAAQFALAVSLTSSQNDLQSLEIEDENSILEKTKDAVITLQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVM 1595 (1622)
T ss_pred cchhhhhhhhccccccchhccccCCchhhhhhhhhhHhHHHHhhccccccccchhhhhccCCcccchHHHHHHHhccccc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhccccCCCCCCCcccccccCCC
Q 000351 1597 SRLARNRLHQSDYDLEERSIDWDHVEM 1623 (1623)
Q Consensus 1597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1623 (1623)
+|++|||.||.+|++|++++|||++||
T Consensus 1596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1622 (1622)
T PLN03130 1596 SRLARNRMQQSDHNFEGKSIDWDNVEM 1622 (1622)
T ss_pred hhHHHHhhccCcccccCCcCChhhhcC
Confidence 999999999999999999999999997
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-214 Score=2195.23 Aligned_cols=1479 Identities=71% Similarity=1.155 Sum_probs=1243.9
Q ss_pred CCccccccccCCCCCCCccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHH
Q 000351 1 MAFKPLDWYCRPVANGVWTKVVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKKDFKVQRFCLKSKLYNYMLGFL 80 (1623)
Q Consensus 1 ~~~~~~~~~c~~~~~~~~~~~~~~~fg~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (1623)
|||+.++++|+|++.|+|++.++.+|+|++|||+++++.++|++++++++++++|.+.++++...+..+..+....+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1495)
T PLN03232 1 MGFEALNWYCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGIL 80 (1495)
T ss_pred CchhHHHhhcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHH
Confidence 89999999999877458999887789999999999999999999999999999998852111111111111222222233
Q ss_pred HHHHhhHHHHHHHHHHhhcccCCCC--CCccHH-HHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHH
Q 000351 81 AAYCTAEPLFQLIMGISALDLDGQS--GLAPFE-ILSLIIEALCWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAV 157 (1623)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1623)
.++++...++..+..++..+.+... ...+.. ++..++..++++++..+.+.||.++.+++.....+|++. .+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (1495)
T PLN03232 81 ACYCVVEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLV---ADAV 157 (1495)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhh---hhHH
Confidence 3333333333222211111112211 112222 555666666666666677777888777665322222222 1212
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccccccccccccCCCCCCCCCCccCchhhH
Q 000351 158 MVNLILSVKNFYNSSVLYLYMSEVIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSR 237 (1623)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 237 (1623)
.....+.....+.......+...+++...+++++++.+|...+++.+.+...+...+.+|+..|..++.+||+++|+|||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 237 (1495)
T PLN03232 158 LLDLVLPLKNSINRTALYLCISSRCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSR 237 (1495)
T ss_pred HHHHHHHHHHHHhccccceehhHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHH
Confidence 22222222222211000112222333334444444556655555444322222222234556666778899999999999
Q ss_pred HHHHhHHHHHHhhccCCCCCCCCCCCCccccHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 238 IFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLGGRFWWGGFWKIGNDLSQ 317 (1623)
Q Consensus 238 ~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~l~~~~~~~w~~~~~~~~~~L~~al~~~~~~~~~~~~~~~l~~~~~~ 317 (1623)
++|+|++|++++|||++|+.+|||+|+++++++.+.++|++.|+++.++++|+|+++++++|++.++.+++++++.+++.
T Consensus 238 ~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1495)
T PLN03232 238 IYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQ 317 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCCH
Q 000351 318 FVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFAS 397 (1623)
Q Consensus 318 ~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~ 397 (1623)
+++|++++.+++++++++..+.++.++++++++.++.+++.++|.+...+++.++|..++..+|+|.++++....++.++
T Consensus 318 ~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~ 397 (1495)
T PLN03232 318 FVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFAS 397 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999765555668888888888888889999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 398 GKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDK 477 (1623)
Q Consensus 398 g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 477 (1623)
|+++|+|++|++++++.+..+|.+|..|++++++++++|..+|++++++++++++++|++.++++++++.++++++.+|+
T Consensus 398 G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~ 477 (1495)
T PLN03232 398 GKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDK 477 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999899999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Q 000351 478 RIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARA 557 (1623)
Q Consensus 478 r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ 557 (1623)
|.+.++|+++|||+||+|+||+.+.+++++.|++|++..++......+..++....|.++++++|++|.+.++.+|++.+
T Consensus 478 r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~v 557 (1495)
T PLN03232 478 RVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARA 557 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999988888887777778888888999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCccccce
Q 000351 558 FTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNIN 637 (1623)
Q Consensus 558 ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~is 637 (1623)
|+++++++.+..|+..+|..+..+.++.+|++||++|++.++......+........|+++|++|+|+++.++++|+|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~in 637 (1495)
T PLN03232 558 FTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDIN 637 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeE
Confidence 99999999999999999999999999999999999999876542211111112234699999999998544578999999
Q ss_pred eEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHh
Q 000351 638 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 717 (1623)
Q Consensus 638 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~ 717 (1623)
|+|++|++++|+||+|||||||+++|+|+++|++|+....+++||||+|+||||++||||||+||+++++++|++++++|
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~ 717 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVT 717 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999998788889999999999999999999999999999999999999999
Q ss_pred CchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEc
Q 000351 718 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 797 (1623)
Q Consensus 718 ~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvt 797 (1623)
+|.+|++.+|+||+|.|||+|.+|||||||||+||||+|++||||||||||||||++++++|+++++.+.++++|+|+||
T Consensus 718 ~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvT 797 (1495)
T PLN03232 718 ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT 797 (1495)
T ss_pred CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777899999999
Q ss_pred CCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccc
Q 000351 798 NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEAS 877 (1623)
Q Consensus 798 H~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1623)
|+++.++.||+|++|++|+|+++|+++++.++++.|.++.......++..++.+..+..... .+... . +.......
T Consensus 798 H~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~ 873 (1495)
T PLN03232 798 NQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKL--GPTVT-I-DVSERNLG 873 (1495)
T ss_pred CChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccc--ccccc-c-cccccccc
Confidence 99999999999999999999999999999988888888776544221111100000000000 00000 0 00000000
Q ss_pred cccccccchhhhhhHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHH
Q 000351 878 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYN 957 (1623)
Q Consensus 878 ~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~ 957 (1623)
...+.+..+....++|+++.|.+++++|++|+++.|+++.++++++++++.+++..++++|+++|++..........+|+
T Consensus 874 ~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l 953 (1495)
T PLN03232 874 STKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYI 953 (1495)
T ss_pred cccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHH
Confidence 00001111223456788889999999999999998887777777778888888899999999999976432233456899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHH
Q 000351 958 TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMG 1037 (1623)
Q Consensus 958 ~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~ 1037 (1623)
++|++++++..++.+++.+++...+.++++++|++++++++++|++||+++|+|+++|||++|++.+|..++..+..++.
T Consensus 954 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~ 1033 (1495)
T PLN03232 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMN 1033 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHH
Q 000351 1038 QVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 1117 (1623)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~ 1117 (1623)
.++.+++.++++++..++..++++|++++++.++.+|.+++|++++.+..+++|+++++.|+++|+.+||+|+++++|.+
T Consensus 1034 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~ 1113 (1495)
T PLN03232 1034 QLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAK 1113 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHH
Confidence 99888888888888888888888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1118 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 1197 (1623)
Q Consensus 1118 ~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~ 1197 (1623)
.+.+..|.+++..+.....++|+.+++++++++++++.+.+.+...+..+....+++.+|++++|+..+..++.++++.+
T Consensus 1114 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~ 1193 (1495)
T PLN03232 1114 INGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQA 1193 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766666666555444433333446788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCC
Q 000351 1198 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 1277 (1623)
Q Consensus 1198 ~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGS 1277 (1623)
..++..+.|++|+.++.+.|+|.+...+...+++.||.+|.|+|+||+|+|+++.++||+|+||+|+|||||||||||||
T Consensus 1194 ~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGS 1273 (1495)
T PLN03232 1194 SKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGA 1273 (1495)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCC
Confidence 99999999999999999988876432233345667999999999999999987767899999999999999999999999
Q ss_pred ChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHH
Q 000351 1278 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 1357 (1623)
Q Consensus 1278 GKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~ 1357 (1623)
|||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+++|+++++++++
T Consensus 1274 GKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~ 1353 (1495)
T PLN03232 1274 GKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDV 1353 (1495)
T ss_pred CHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 000351 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 1437 (1623)
Q Consensus 1358 i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti 1437 (1623)
|+++|+||||.++|+|.+|||||||||||||||+++|+|||||||||+||++||+.||++|++.+++||+|+||||++|+
T Consensus 1354 I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti 1433 (1495)
T PLN03232 1354 IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI 1433 (1495)
T ss_pred HHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHHhhhhhHHHHHHH
Q 000351 1438 IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSL 1486 (1623)
Q Consensus 1438 ~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~~~~~~~~~~~~~ 1486 (1623)
.+||||+||++|+|+|+|+|+||+++++|.|++|++.++..+.+.++..
T Consensus 1434 ~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~~~~~~ 1482 (1495)
T PLN03232 1434 IDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSNL 1482 (1495)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhhhHHHHHH
Confidence 9999999999999999999999999888899999999887766655544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-204 Score=2097.31 Aligned_cols=1427 Identities=36% Similarity=0.609 Sum_probs=1211.3
Q ss_pred CCcccc--ccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhc-ccc-cccccchhhhHHHHHHHHHHHHhhHHHHH
Q 000351 16 GVWTKV--VDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLIKK-DFK-VQRFCLKSKLYNYMLGFLAAYCTAEPLFQ 91 (1623)
Q Consensus 16 ~~~~~~--~~~~fg~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (1623)
++|++. +++...+++|||++++++++|+++|++++|+|++.+++ +++ .... .++.+|.....++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~d~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~k~~~~~~~~~~~~~~- 82 (1522)
T TIGR00957 8 PLWDWNVTWHTSNPDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMT----HLNKTKTALGFLLWIVCWAD- 82 (1522)
T ss_pred CCCCCcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcc----hHHHHHHHHHHHHHHHHHHH-
Confidence 457643 56666778999999999999999999999999999873 333 2221 23445655555555554311
Q ss_pred HHHHHhhcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccc-
Q 000351 92 LIMGISALDLDGQSGLAPFEILSLIIEALCWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILSVKNFYN- 170 (1623)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (1623)
++...+.. ..+....+..++++++.++++++++++++.||.+++||+.... .+|+..+++|.+..|+.|.......
T Consensus 83 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1522)
T TIGR00957 83 -LFYSFWER-SHGRAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIML-TFWLVALVCALAILRSKILLALKEDA 159 (1522)
T ss_pred -HHHHHHhc-cccccccchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchh-HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 12222210 1111112466888889999999999999999999999986433 3344445778999999886532100
Q ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccccccccccccCCCCCCCCCCccCchhhHHHHHhHHHHH
Q 000351 171 ---SSVLYLYMSEVIVQALFGLLLLVYVPELDPYPGYTPMRTELVDDAEYEELPGGEQICPERQANIFSRIFFSWMNPLM 247 (1623)
Q Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~Wl~pl~ 247 (1623)
......+...+.++ .++++ ++...++ .|..++ . ..+++.+||+++|++||++|||+||++
T Consensus 160 ~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~---~~~~~~------~---~~~~~~~~e~~a~~~s~~~f~W~~pl~ 222 (1522)
T TIGR00957 160 IVDPFRDTTFYIYFALV----LSQLV-LSCFSDK---SPLFSE------T---NHDPNPCPESSASFLSRITFWWITGMA 222 (1522)
T ss_pred cccceehhhHHHHHHHH----HHHHH-HHhhcCC---CCcccc------c---cccCCCCCcccCCHHHHHHHHHhHHHH
Confidence 00011112211111 12222 2211111 111110 0 012346899999999999999999999
Q ss_pred HhhccCCCCCCCCCCCCccccHHHHHHHHHHHHHHhc-----------------------------------------CC
Q 000351 248 KKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKES-----------------------------------------QR 286 (1623)
Q Consensus 248 ~~g~~~~L~~~Dl~~l~~~~~s~~l~~~~~~~w~~~~-----------------------------------------~~ 286 (1623)
++|||++|+.+|||+++++++++.+.++|++.|+++. +.
T Consensus 223 ~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1522)
T TIGR00957 223 VYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKP 302 (1522)
T ss_pred HHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999998752 11
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 287 PKPWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDG-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNV 365 (1623)
Q Consensus 287 ~~~~L~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1623)
++++|+++++++|++.++.+++++++..++.+++|++++.+++++.++. +.+.||++++++++++++.+++.++|.|..
T Consensus 303 ~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1522)
T TIGR00957 303 RKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHIC 382 (1522)
T ss_pred CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999997643 345688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000351 366 MRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLL 445 (1623)
Q Consensus 366 ~r~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~ 445 (1623)
.+++.++|++|+..||+|+++++....++.++|+++|+|++|++++.++...+|.+|..|++++++++++|..+|+++++
T Consensus 383 ~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~ 462 (1522)
T TIGR00957 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLA 462 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 446 GALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAAC 525 (1623)
Q Consensus 446 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~ 525 (1623)
|++++++++|++.++++++++.++++++.+|+|++.++|+++|||+||+|+||+.+.+++++.|++|++..++..++..+
T Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 542 (1522)
T TIGR00957 463 GVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 000351 526 NSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL 603 (1623)
Q Consensus 526 ~~~~~~~~~~~~~~~~f~~~~~~--~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~ 603 (1623)
..+++...|.++.+++|++|.+. ++.++++.+|+++++++.+..|+..+|..++.+.++.+|++||++|++.++....
T Consensus 543 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~ 622 (1522)
T TIGR00957 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD 622 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 87777788888888889888776 4679999999999999999999999999999999999999999999987654221
Q ss_pred C--CCCCC-CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcCc
Q 000351 604 P--NPPLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT 680 (1623)
Q Consensus 604 ~--~~~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~ 680 (1623)
. ..... .....|+++|++|+|+++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.++++
T Consensus 623 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G-~i~~~g~ 700 (1522)
T TIGR00957 623 SIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVHMKGS 700 (1522)
T ss_pred cccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCc-EEEECCE
Confidence 1 00111 112369999999999742 46799999999999999999999999999999999999999999 7788899
Q ss_pred EEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
||||||+||++++||+|||.||.++++++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||
T Consensus 701 i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 701 VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHh--hhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHH
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 838 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~--~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 838 (1623)
++|||||||+||+++++++++.+++ +..+++|+|+|||+++++..||+|++|++|+|+++|+++++.++.+.+.++..
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 860 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHH
Confidence 9999999999999999999999874 45678999999999999999999999999999999999999988777777765
Q ss_pred hhcchhhhhc-ccc-----cCcccc----cC--C-----CCCCCCC---CCCCCCc---c--cc-c-cc-ccccchhhhh
Q 000351 839 NAGKMEEYVE-EKE-----DGETVD----NK--T-----SKPAANG---VDNDLPK---E--AS-D-TR-KTKEGKSVLI 890 (1623)
Q Consensus 839 ~~~~~~~~~~-~~~-----~~~~~~----~~--~-----~~~~~~~---~~~~~~~---~--~~-~-~~-~~~~~~~~~~ 890 (1623)
.....++... ++. ..+... +. . ....... ....... . .. . .. ..++......
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1522)
T TIGR00957 861 TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLM 940 (1522)
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhH
Confidence 3322111000 000 000000 00 0 0000000 0000000 0 00 0 00 0001112345
Q ss_pred hHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCcc--CCCCchHHHHHHHHHHHHHH
Q 000351 891 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTIYSLLSFGQV 968 (1623)
Q Consensus 891 ~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~~~~~iy~~l~~~~~ 968 (1623)
.+|+++.|.+++++|++|+++.|. +.++++++++++.+++..+.++|+++|++.... ......+|+++|++++++..
T Consensus 941 ~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~ 1019 (1522)
T TIGR00957 941 EADKAQTGQVELSVYWDYMKAIGL-FITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQG 1019 (1522)
T ss_pred HHHHHhcCcccHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHH
Confidence 667788999999999999998764 445556666677788889999999999975431 12234568889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhH
Q 000351 969 LVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL 1048 (1623)
Q Consensus 969 ~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~ 1048 (1623)
++.++..+++...+.++++++|++++++++++|++||+++|+|+++|||++|++.+|..++..+..++..++.+++.+++
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~ 1099 (1522)
T TIGR00957 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000351 1049 IGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIR 1128 (1623)
Q Consensus 1049 ~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~ 1128 (1623)
+++..|+++++++|++++++.++++|.+++|++++.+.++++|+++++.|+++|+.+||+|+++++|.+++.+..|.+++
T Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1179 (1522)
T TIGR00957 1100 ILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQK 1179 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1129 YTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVE 1208 (1623)
Q Consensus 1129 ~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~ave 1208 (1623)
..+.....++|++.++++++.+++++++.+.+...+..+ ++.+|+++.|++.+..++.++++.+..+++.++|++
T Consensus 1180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~e 1254 (1522)
T TIGR00957 1180 AYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVE 1254 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988777776666665556666 899999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhc
Q 000351 1209 RVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1209 Ri~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~r 1288 (1623)
|+.++.+.|+|.+...+...+++.||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|
T Consensus 1255 Ri~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1255 RLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred HHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999998877643333344566899999999999999998776689999999999999999999999999999999999
Q ss_pred cccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchh
Q 000351 1289 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 1368 (1623)
Q Consensus 1289 l~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~ 1368 (1623)
+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||++++++++|+++|+||||.
T Consensus 1335 l~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1335 INESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred CccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeC
Q 000351 1369 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 1448 (1623)
Q Consensus 1369 v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1448 (1623)
++|+|.+||||||||+||||||+++|+|||||||||+||.+||+.||++|++.+++||||+||||++++.+||||+|||+
T Consensus 1415 v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1415 CAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDK 1494 (1522)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeecChhHHhhcCCChHHHHHHHhh
Q 000351 1449 GRVLEYDTPEELLSNEGSSFSKMVQSTG 1476 (1623)
Q Consensus 1449 G~ive~Gtp~eLl~~~~~~f~~l~~~~~ 1476 (1623)
|+|+|+|+|+||+++ +|.|++|++++|
T Consensus 1495 G~IvE~G~~~eLl~~-~~~f~~l~~~~g 1521 (1522)
T TIGR00957 1495 GEVAEFGAPSNLLQQ-RGIFYSMAKDAG 1521 (1522)
T ss_pred CEEEEECCHHHHHhC-CCHHHHHHHHcC
Confidence 999999999999987 589999998754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-189 Score=1945.40 Aligned_cols=1242 Identities=28% Similarity=0.523 Sum_probs=1089.9
Q ss_pred CCCCccCchhhHHHHHhHHHHHHhhccCCCCCCCCCCCCccccHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHH
Q 000351 226 ICPERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKCWAKES--QRPKPWLLRALNSSLGGRF 303 (1623)
Q Consensus 226 ~~pe~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~l~~~~~~~w~~~~--~~~~~~L~~al~~~~~~~~ 303 (1623)
.+||+++|+|||++|||+||++++|||++|+.+|||+|+++++++.+.++|++.|+++. .+++++|+++++++|+|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999998864 2456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 304 WWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGP--AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVF 381 (1623)
Q Consensus 304 ~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i~ 381 (1623)
+..++++++.+++.+++|++++.++++++..+. .+.||++++++++++++.+++.+++.|...+++.++|++|+..||
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999954322 356888999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000351 382 RKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFII 461 (1623)
Q Consensus 382 ~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~~~~~~~ 461 (1623)
+|+++++....++.++|+++|+|++|++++.+++..+|.+|..|+++++++++||.++|+++++|++++++++|++.+++
T Consensus 163 ~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~ 242 (1490)
T TIGR01271 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242 (1490)
T ss_pred HHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 462 SRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVS 541 (1623)
Q Consensus 462 ~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 541 (1623)
+++.+.++++++.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..++..+..+++...|.++++++
T Consensus 243 ~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1490)
T TIGR01271 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888899999999
Q ss_pred HHHHHHhCCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcEEEEee
Q 000351 542 FGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG 620 (1623)
Q Consensus 542 f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~-~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i~~~~~ 620 (1623)
|++|.+.++ ++++.+|+++++|++++.|+. .+|..+..+.++.+|++||++||..++...... ......++++|+
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---~~~~~~i~~~~~ 398 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY---NLTTTEVEMVNV 398 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---cCCCCceEEecc
Confidence 999987654 789999999999999999985 799999999999999999999998776532211 111235999999
Q ss_pred EEEcCCC-------------------------------CCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccC
Q 000351 621 YFSWDSK-------------------------------AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 669 (1623)
Q Consensus 621 ~f~~~~~-------------------------------~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 669 (1623)
+|.|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|+++|
T Consensus 399 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~ 478 (1490)
T TIGR01271 399 TASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP 478 (1490)
T ss_pred eEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 9999531 014689999999999999999999999999999999999999
Q ss_pred CCCCeEEEcCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 670 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 670 ~~g~~~~~~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
++| .+.+.++||||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||+|.+|++|.+|||||||||
T Consensus 479 ~~G-~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 479 SEG-KIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred CCc-eEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 999 7778899999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
+||||+|++|++|||||||||||+++++++++.|+....+|+|+|+|||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999999888777789999999999999999999999999999999999999876
Q ss_pred ChhHHHhHHhhcchh--------------------h--h-----hccc------ccCc--cc------------------
Q 000351 830 GELFQKLMENAGKME--------------------E--Y-----VEEK------EDGE--TV------------------ 856 (1623)
Q Consensus 830 ~~~~~~~~~~~~~~~--------------------~--~-----~~~~------~~~~--~~------------------ 856 (1623)
.+.+........... + . .++. +..+ ..
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1490)
T TIGR01271 638 RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSF 717 (1490)
T ss_pred ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 655555442100000 0 0 0000 0000 00
Q ss_pred -------------ccCCCCCCCCC-----C----CCCCC-----------------------cc-------c-----c--
Q 000351 857 -------------DNKTSKPAANG-----V----DNDLP-----------------------KE-------A-----S-- 877 (1623)
Q Consensus 857 -------------~~~~~~~~~~~-----~----~~~~~-----------------------~~-------~-----~-- 877 (1623)
......+.... . ....+ .. . .
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1490)
T TIGR01271 718 VQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFR 797 (1490)
T ss_pred ccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccc
Confidence 00000000000 0 00000 00 0 0
Q ss_pred ------------cc--------ccc------c-----cchhhhhhHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000351 878 ------------DT--------RKT------K-----EGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYF 926 (1623)
Q Consensus 878 ------------~~--------~~~------~-----~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~ 926 (1623)
.. ... . .......++|+++.|.++|++|++|+++.|+++.+++++++++
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~ 877 (1490)
T TIGR01271 798 KKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIF 877 (1490)
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 00 000 0 0001134557778899999999999998887677677777778
Q ss_pred HHHHHHhhhhchhhhhcccC-------ccCC------------CCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 927 LTETLRVSSSTWLSYWTDQS-------SLKT------------HGPLFY-NTIYSLLSFGQVLVTLANSYWLIISSLYAA 986 (1623)
Q Consensus 927 ~~~~~~~~~~~wl~~w~~~~-------~~~~------------~~~~~~-~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s 986 (1623)
+.+++..+.++|+.+|.+.. .... ....+| +.+|..+.++..++.+++.+++...+.+++
T Consensus 878 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1490)
T TIGR01271 878 LAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVS 957 (1490)
T ss_pred HHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999887521 0000 011233 455555555566777889999999999999
Q ss_pred HHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 000351 987 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 1066 (1623)
Q Consensus 987 ~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1066 (1623)
+++|.+++++++++|+.||+++|+|+++|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|++++
T Consensus 958 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~ 1037 (1490)
T TIGR01271 958 KRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVI 1037 (1490)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1067 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 1146 (1623)
Q Consensus 1067 ~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1146 (1623)
++.++++|.+++|++++.+..+++|+++++.|+++|+.|||+|++++++.+++.+..+.+++..+...+.++|+..++++
T Consensus 1038 ~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 1117 (1490)
T TIGR01271 1038 FIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDI 1117 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc-
Q 000351 1147 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE- 1225 (1623)
Q Consensus 1147 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~- 1225 (1623)
++.+++..++.+++... ..+ ++.+|++++|++.+...+.++++.+..++..+.|++|+.+|.+.|+|.+...+
T Consensus 1118 i~~~~~~~~~~l~~~~~-~~~-----~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1118 IFVFFFIAVTFIAIGTN-QDG-----EGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHh-cCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 87765555444433322 223 56789999999999999999999999999999999999999988777532111
Q ss_pred -------------CCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC
Q 000351 1226 -------------SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 1292 (1623)
Q Consensus 1226 -------------~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p 1292 (1623)
...+++.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 123456799999999999999998777789999999999999999999999999999999999997
Q ss_pred CCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcC
Q 000351 1293 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1372 (1623)
Q Consensus 1293 ~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~ 1372 (1623)
++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||++++++++++++|+||||.++|+
T Consensus 1271 ~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1271 TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEe
Q 000351 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL 1452 (1623)
Q Consensus 1373 G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~iv 1452 (1623)
|.+|||||||||||||||+++|+|||||||||+||.+||+.||++|++.+++||||+||||++++.+||||+||++|+|+
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecChhHHhhcCCChHHHHHHHhhhhhH
Q 000351 1453 EYDTPEELLSNEGSSFSKMVQSTGAANA 1480 (1623)
Q Consensus 1453 e~Gtp~eLl~~~~~~f~~l~~~~~~~~~ 1480 (1623)
|+|+|++|++ +++.|++|++..+..+.
T Consensus 1431 E~g~p~~Ll~-~~~~f~~l~~~~~~~~~ 1457 (1490)
T TIGR01271 1431 QYDSIQKLLN-ETSLFKQAMSAADRLKL 1457 (1490)
T ss_pred EeCCHHHHHc-CCcHHHHHHHHhChhcc
Confidence 9999999997 57899999998766543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-181 Score=1857.91 Aligned_cols=1249 Identities=33% Similarity=0.572 Sum_probs=1083.1
Q ss_pred CCCCCccCchhhHHHHHhHHHHHHhhccCCCCCCCCCCCCccccHHHHHHHHHHH----------HHHh-----------
Q 000351 225 QICPERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQTETLNNQFQKC----------WAKE----------- 283 (1623)
Q Consensus 225 ~~~pe~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~l~~~~~~~----------w~~~----------- 283 (1623)
...||+++|||.++++.|++|++.++.|..|+.+|||+...+.++-++..++.+. |+-.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 3579999999999999999999999999999999999999888886665555442 3310
Q ss_pred -c------------------------------------------------------------------------------
Q 000351 284 -S------------------------------------------------------------------------------ 284 (1623)
Q Consensus 284 -~------------------------------------------------------------------------------ 284 (1623)
.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred ----------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHH
Q 000351 285 ----------QRPKPWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPA-WIGYIYAFSIFVGVVL 353 (1623)
Q Consensus 285 ----------~~~~~~L~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~-~~g~~~~~~~~~~~~~ 353 (1623)
.++..+|+++++++|++.++.+++++++.+++.+++|++++.+++++++++.. ..|+++++++++++++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 01234899999999999999999999999999999999999999999765443 3577888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 354 GVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARK--NFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIIS 431 (1623)
Q Consensus 354 ~~~~~~~~~~~~~r~~~~ir~~L~~~i~~K~l~l~~~~~~--~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~ 431 (1623)
.+++.++|.+...+.+.++|++|...+|+|+++++..... +.++|+++|+|++|++++.+++..+|.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987665 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHH
Q 000351 432 LVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRND 511 (1623)
Q Consensus 432 ~~lL~~~lg~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~ 511 (1623)
+++||.++||++++|++++++++|++.++++++.+.++++++.+|+|++.++|+++|||.||+||||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 512 ELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRM 591 (1623)
Q Consensus 512 el~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI 591 (1623)
|++..++..++..+..++++++|.++++++|++|.+.++.+|++.+|+++++|+.++.|+.++|..++.+.++.+|++||
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccc----C------------CC-C--------------C-----------------------------CCCC
Q 000351 592 EEFLLAEEKIL----L------------PN-P--------------P-----------------------------LTSG 611 (1623)
Q Consensus 592 ~~fL~~~e~~~----~------------~~-~--------------~-----------------------------~~~~ 611 (1623)
++||..+|... . +. . + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 99998765210 0 00 0 0 0000
Q ss_pred CCcEEEEeeEEEcCCC-------------------------------------CCCCccccceeEecCCcEEEEEcCCCC
Q 000351 612 LPAISIRNGYFSWDSK-------------------------------------AERPTLLNINLDIPVGSLVAIVGGTGE 654 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~-------------------------------------~~~~~L~~isl~i~~G~~~~ivG~~Gs 654 (1623)
.+.+.++|++|+|+.. .++++|+|+||+|++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 1246677777765310 134689999999999999999999999
Q ss_pred ChhHHHHHHcCCccCCCCCeEEEcCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccc
Q 000351 655 GKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734 (1623)
Q Consensus 655 GKSTLl~~l~G~~~~~~g~~~~~~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~i 734 (1623)
||||||++|+|+++|++| .+..+++||||||+||++++||+|||.|+.++++++|.++++.|++.+|++.+|+|++|.+
T Consensus 698 GKSTLL~~i~G~~~~~~G-~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEG-RVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred cHHHHHHHHhcCCCCCCc-EEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 999999999999999999 6677889999999999999999999999988888899999999999999999999999999
Q ss_pred cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeC
Q 000351 735 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 814 (1623)
Q Consensus 735 g~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 814 (1623)
|++|.+|||||||||+||||+|++|++||||||||+||+++++++++.++.+..+|+|+|+|||++++++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999887766679999999999999999999999999
Q ss_pred CEEEEecChhHHhhcChhHHHhHHhhcchhhhhcccccCc--ccccCCCCCC-CCC--CCCCCCcccccccccccchhhh
Q 000351 815 GMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE--TVDNKTSKPA-ANG--VDNDLPKEASDTRKTKEGKSVL 889 (1623)
Q Consensus 815 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 889 (1623)
|+++++|+++++.+.+ .+..+........+..+...+.+ .......... ... .....................+
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 9999999999998754 45555433211110000000000 0000000000 000 0000000000000001112234
Q ss_pred hhHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHH
Q 000351 890 IKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVL 969 (1623)
Q Consensus 890 ~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~ 969 (1623)
..+|+++.|.++|++|++|+++.|++..++++++++++.+++..++++|+++|++... ......|+++|+++.++..+
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~--~~~~~~~l~~y~~~~~~~~~ 1013 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF--KLSAATYLYVYLGIVLLGTF 1013 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCCcccHHHHHHHHHHHHHH
Confidence 5667788899999999999999888777777777777888899999999999987542 23345688999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHH
Q 000351 970 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLI 1049 (1623)
Q Consensus 970 ~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~ 1049 (1623)
+.+++.+.....+.++++++|++++++++++|+.|||++|+|+++|||++|++.+|..++..+..++..++.+++.++++
T Consensus 1014 ~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~ 1093 (1560)
T PTZ00243 1014 SVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVT 1093 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88788777778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000351 1050 GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRY 1129 (1623)
Q Consensus 1050 ~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~ 1129 (1623)
++..|+++++++|++++++.+..+|.+..|++++....+++|+++++.|+++|+.+||+|+.++.+.+++.+..|.+.+.
T Consensus 1094 ~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~ 1173 (1560)
T PTZ00243 1094 SASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSC 1173 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1130 TLVNMGANRWLAIRLEIVGGLMIWLTATFAVV----QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLN 1205 (1623)
Q Consensus 1130 ~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~ 1205 (1623)
.+.....++|+.++++++..+++++++.+.+. ..+..+ .+.+|++++|+..+..++.++++.+..++..+.
T Consensus 1174 ~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~ 1248 (1560)
T PTZ00243 1174 SYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQE-----IGLVSLSLTMAMQTTATLNWLVRQVATVEADMN 1248 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887765544443332 122233 778999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCCCcc-----------------------ccCCCCC---CCCCCCccEEEEEEEEEeCCCCCCcccc
Q 000351 1206 AVERVGNYIE-LPSEAPLV-----------------------IESNRPP---PGWPSSGSIKFEDVVLRYRPELPPVLHG 1258 (1623)
Q Consensus 1206 aveRi~~~~~-~~~e~~~~-----------------------~~~~~~~---~~wp~~g~I~~~nVs~~Y~~~~~~vL~~ 1258 (1623)
+++|+.++.+ .|+|+... .+...++ +.||..|.|+|+||+|+|+++.++||+|
T Consensus 1249 s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~ 1328 (1560)
T PTZ00243 1249 SVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRG 1328 (1560)
T ss_pred HHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeec
Confidence 9999999996 44442110 0011122 2355678999999999998776789999
Q ss_pred eeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC
Q 000351 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 1338 (1623)
Q Consensus 1259 isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~ 1338 (1623)
|||+|+||||||||||||||||||+++|+|+++|++|+|+|||+||++++++++|++|++|||||+||+||||+||||++
T Consensus 1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~ 1408 (1560)
T PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408 (1560)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC-CcEEEEeCCCCCCCHHHHHHHHHH
Q 000351 1339 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKT 1417 (1623)
Q Consensus 1339 ~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~-p~ILlLDEpTS~LD~~Te~~Iq~~ 1417 (1623)
+++|+++|+||++++++++|+++|+||||.++|+|.||||||||||||||||+++ |+|||||||||+||++||+.||++
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHHhhhhhHHH
Q 000351 1418 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 1482 (1623)
Q Consensus 1418 L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~~~~~~~~~ 1482 (1623)
|++.++++|||+||||++++.+||+|+||++|+|+|+|+|+||+++++|.|++|++.++..+.+.
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~~ 1553 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKR 1553 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhHHHH
Confidence 99999999999999999999999999999999999999999999988899999998877544433
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-144 Score=1371.83 Aligned_cols=1150 Identities=22% Similarity=0.303 Sum_probs=855.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 299 LGGRFWWGGFWKIGNDLSQFVGPLL---LNQLLQSMQQDGP-------AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRV 368 (1623)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~P~l---l~~li~~l~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (1623)
-++++++..+-.++..+....+|++ ...+.+.+..... ...++.+....+...+...+....+.+...|.
T Consensus 23 ~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq 102 (1228)
T KOG0055|consen 23 DRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQ 102 (1228)
T ss_pred chhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666654 3566665544321 11222222211222222233344466667777
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000351 369 GFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGA 447 (1623)
Q Consensus 369 ~~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~ 447 (1623)
..++|......+.+ -+...++...+|++.+.|+.|+++|++++. .+..+......++.++++.+..-+..+++++
T Consensus 103 ~~riR~~yl~~iLr----Qdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l 178 (1228)
T KOG0055|consen 103 TARIRSKYLKAILR----QDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVML 178 (1228)
T ss_pred HHHHHHHHHHHHHh----CccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666655 444556666779999999999999999874 3333333444444555555555445899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 448 LLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNS 527 (1623)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~ 527 (1623)
.+.+++......+++.+.+...+.+++..+--+...|.+.+||+|-.|+-|+...++..+.-+.-.+...+......+..
T Consensus 179 ~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~ 258 (1228)
T KOG0055|consen 179 SFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGL 258 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998999999999999999999999999999999999999999999999988887777766666666665555554
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 000351 528 FILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN 605 (1623)
Q Consensus 528 ~~~~~~~--~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~ 605 (1623)
.+..... .....++||...+..+..+++.+++++...-.-...|.+....+..+..|.+|..+|.+.++..+..+...
T Consensus 259 G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~ 338 (1228)
T KOG0055|consen 259 GFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS 338 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc
Confidence 4443332 23445666666666788999999998866666667788888899999999999999999998765433221
Q ss_pred C---CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-----
Q 000351 606 P---PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----- 677 (1623)
Q Consensus 606 ~---~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----- 677 (1623)
. ........|+++||+|+||++++.++|+|+||+|++|+.++|||||||||||++++|.|.++|++| .+.+
T Consensus 339 ~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G-~V~idG~di 417 (1228)
T KOG0055|consen 339 KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG-EVLIDGEDI 417 (1228)
T ss_pred ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc-eEEEcCccc
Confidence 1 112234679999999999988778999999999999999999999999999999999999999999 4443
Q ss_pred --------cCcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 678 --------RGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 678 --------~~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+++||.|.|+|.||++||+|||.||+| .+.++..++.+.+...+.+..+|+|++|.+||+|..||||||||
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 447999999999999999999999985 46889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
|||||||.+||+||||||||||||+++++.+. ..+....+|+|.|+|+||++.+++||+|++|++|+|+|+|+|+||++
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq-~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQ-EALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHH-HHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999887775 46777889999999999999999999999999999999999999999
Q ss_pred cChhHHHhHHhhcchhhhhcccccCccc---ccCC-CCCCCCCCCCCCCccccc-ccccccchhhhhhHhhhhcccchHH
Q 000351 829 NGELFQKLMENAGKMEEYVEEKEDGETV---DNKT-SKPAANGVDNDLPKEASD-TRKTKEGKSVLIKQEERETGVVSFK 903 (1623)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~g~v~~~ 903 (1623)
.++.|.+++..+.......+++.+.+.. .... .+................ .....+........+. -..++.
T Consensus 577 ~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~s~~ 653 (1228)
T KOG0055|consen 577 LGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED---EKVSFW 653 (1228)
T ss_pred ccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc---ccccHH
Confidence 9999999987664333211100000000 0000 000000000000000000 0000000000001111 122333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhh----hcccC-ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 904 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSY----WTDQS-SLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL 978 (1623)
Q Consensus 904 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~----w~~~~-~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~ 978 (1623)
-..+|.+. .|+++++-.++.++.........+.++. ..... .........|..+|.+++++..++.++..+++
T Consensus 654 ~i~k~~~p--e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f 731 (1228)
T KOG0055|consen 654 RIFKLNKP--EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFF 731 (1228)
T ss_pred HHHHhccc--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 3455544444444433333322222221 11111 11112234599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccc--CCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 000351 979 IISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 1056 (1623)
Q Consensus 979 ~~~~~~~s~~lh~~ll~~ll~ap~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1623)
.+.+.+...++|..+++++++.++.|||. |. |.+.+|+.+|...+...+...+..+++.+..++..+++.++.+|.+
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~l 810 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRL 810 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 55 9999999999999999999999999999999999999999999987
Q ss_pred HHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1057 LWAIM---PLLLLFYAAYLYYQS-TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLV 1132 (1623)
Q Consensus 1057 ~~~~~---~l~~~~~~i~~~y~~-~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~ 1132 (1623)
.++++ |++++....+..+.. ..++.+ ...........|++.+++||++|+.|++|.+.+.+.++...+....
T Consensus 811 alv~la~~Pll~~~~~~~~~~~~~~~~~~~----~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~ 886 (1228)
T KOG0055|consen 811 ALVVLATFPLLILSGYLQKKFLKGFSKDDK----KAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFK 886 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 444444444433332 222222 2222333466899999999999999999999999988887776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1133 NMGANRWLAIRLEIVGGLMIWLTAT-----FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAV 1207 (1623)
Q Consensus 1133 ~~~~~~wl~~~l~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~av 1207 (1623)
.. .|.++...+-..++.+..++ ..+...+..+....+-... ++.+ -...+..........-....|+
T Consensus 887 ~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~--~l~~---ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 887 RG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFM--ALSF---TAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHH--HHHH---HHHHHHHHHhhCcHHHHHHHHH
Confidence 33 33333332222222211111 1112333333211111111 1111 1223444455566677778899
Q ss_pred HHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCC-CCcccceeeEeCCCCEEEEecCCCCChhhHHHHh
Q 000351 1208 ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 1286 (1623)
Q Consensus 1208 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL 1286 (1623)
.++.++++.+++.+...+... ..-+.+|+|+|+||+|+|+... .+||+|+||+|++||.+||||||||||||++.+|
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~--~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGG--KLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCC--ccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 999999986553221111110 1113579999999999995321 3799999999999999999999999999999999
Q ss_pred hccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHHhcHHHHHHhccCCc
Q 000351 1287 FRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGL 1365 (1623)
Q Consensus 1287 ~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gL 1365 (1623)
.|+|+|++|.|.|||.||+++++++||++|++|.|||.||++||||||... .+.+++||.+|++.+++|+||.++|+||
T Consensus 1037 eRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~Gy 1116 (1228)
T KOG0055|consen 1037 ERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGY 1116 (1228)
T ss_pred HHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcc
Confidence 999999999999999999999999999999999999999999999999976 3469999999999999999999999999
Q ss_pred chhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEE
Q 000351 1366 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 1445 (1623)
Q Consensus 1366 dt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~V 1445 (1623)
||.|||+|.+||||||||+|||||++|||+|||||||||+||.++|+.+|++|++...+||+|+|||||+||++||.|+|
T Consensus 1117 DT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1117 DTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAV 1196 (1228)
T ss_pred cCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEeeecChhHHhhcCCChHHHHHHHh
Q 000351 1446 LDSGRVLEYDTPEELLSNEGSSFSKMVQST 1475 (1623)
Q Consensus 1446 l~~G~ive~Gtp~eLl~~~~~~f~~l~~~~ 1475 (1623)
+++|+|+|.|||++|++ ++|.|++|++.+
T Consensus 1197 i~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1197 LKNGKVVEQGTHDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred EECCEEEecccHHHHHh-CCCchHHHhhhc
Confidence 99999999999999998 678999999754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-133 Score=1371.66 Aligned_cols=1172 Identities=18% Similarity=0.237 Sum_probs=865.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 291 LLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGF 370 (1623)
Q Consensus 291 L~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 370 (1623)
+++-..+.+++.+++++++.++..++..+.|++++.+++.+...... ..+++.++++.++..++...+.+...+++.
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENV---NDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445666778888888999999999999999999976432111 112223333344444555556666778888
Q ss_pred HHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000351 371 RLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLGALL 449 (1623)
Q Consensus 371 ~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~ 449 (1623)
++...++..+|++.++++....+....|++.+.++.|++.++..+ ..+..+...++.++.++++++..-+..+++.+++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~ 206 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCV 206 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999998888899999999999999999876 4566667777777777777776666677877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 450 LVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFI 529 (1623)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~ 529 (1623)
+++++.+..++.+++.+..++..+..++..+.+.|.++||++||.|+.|+.+.+++.+..+...+...+......+...+
T Consensus 207 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~ 286 (1466)
T PTZ00265 207 FPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGM 286 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88878788888889888888888888999999999999999999999999999999877666666555555555544333
Q ss_pred HHHHHH--HHHHHHHHHHHHhCC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000351 530 LNSIPV--LVTVVSFGMFTLLGG--------DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEE 599 (1623)
Q Consensus 530 ~~~~~~--~~~~~~f~~~~~~~~--------~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e 599 (1623)
...+.. .+.++.+|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.+.++.++
T Consensus 287 ~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~ 366 (1466)
T PTZ00265 287 INGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKP 366 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333322 234456677666543 5788888876655444445566666678899999999999999998765
Q ss_pred cccCCCC-CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-
Q 000351 600 KILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI- 677 (1623)
Q Consensus 600 ~~~~~~~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~- 677 (1623)
..+.... ...+....|+++|++|+|++.+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+
T Consensus 367 ~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~i~ 445 (1466)
T PTZ00265 367 LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG-DIIIN 445 (1466)
T ss_pred CCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCC-eEEEe
Confidence 4221111 001112369999999999854345799999999999999999999999999999999999999999 4443
Q ss_pred -------------cCcEEEEccCcccCcccHHHHHhcCCC----------------------------------------
Q 000351 678 -------------RGTVAYVPQVSWIFNATVRDNILFGSA---------------------------------------- 704 (1623)
Q Consensus 678 -------------~~~iay~~Q~~~l~~~Tv~enI~~g~~---------------------------------------- 704 (1623)
++.||||+|+|.+|++||+|||.+|..
T Consensus 446 ~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1466)
T PTZ00265 446 DSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDM 525 (1466)
T ss_pred CCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhc
Confidence 235999999999999999999998731
Q ss_pred ------------------CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q 000351 705 ------------------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 766 (1623)
Q Consensus 705 ------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDe 766 (1623)
.+++++.++++.+++.+.+..+|+|++|.+|++|.+|||||||||+||||++++|+||||||
T Consensus 526 ~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDE 605 (1466)
T PTZ00265 526 SNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605 (1466)
T ss_pred ccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 23467788889999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCC------------------------------
Q 000351 767 PLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEG------------------------------ 815 (1623)
Q Consensus 767 p~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G------------------------------ 815 (1623)
|||+||+++++.|.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 606 pTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1466)
T PTZ00265 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDD 685 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccc
Confidence 9999999999999876554332 589999999999999999999999986
Q ss_pred -----------------EEEEecChhHHhh-cChhHHHhHHhhcchhhhhc-c--cccC---cccccCCCCCC-CCCCC-
Q 000351 816 -----------------MVKEEGTFEDLSN-NGELFQKLMENAGKMEEYVE-E--KEDG---ETVDNKTSKPA-ANGVD- 869 (1623)
Q Consensus 816 -----------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~--~~~~---~~~~~~~~~~~-~~~~~- 869 (1623)
+|+|+|+|+||++ ..+.|..++..+........ + +.+. ........... .....
T Consensus 686 ~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1466)
T PTZ00265 686 NNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNG 765 (1466)
T ss_pred ccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 58889888866533211110 0 0000 00000000000 00000
Q ss_pred ----CCCC-c--ccccc--c--ccccchhhhhhHhhh----hcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 000351 870 ----NDLP-K--EASDT--R--KTKEGKSVLIKQEER----ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 934 (1623)
Q Consensus 870 ----~~~~-~--~~~~~--~--~~~~~~~~~~~~e~~----~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~ 934 (1623)
...+ . ..... + .+...+......+.. ......+..+.+++.... ..+++.+++.++..++...
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 843 (1466)
T PTZ00265 766 NSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYK--KDVTIIALSILVAGGLYPV 843 (1466)
T ss_pred cccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00000 0 000000000000000 000001222223332211 1133333344444445554
Q ss_pred hhchhhhhcccCccC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--CC
Q 000351 935 SSTWLSYWTDQSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NP 1009 (1623)
Q Consensus 935 ~~~wl~~w~~~~~~~---~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~--~~ 1009 (1623)
.++.++.+.+..... ......|..++++++++..++.++..++....+.+...+++.++++++++.|+.|||+ ++
T Consensus 844 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~ 923 (1466)
T PTZ00265 844 FALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHA 923 (1466)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCC
Confidence 555555544322110 1123356777778888888899999999999999999999999999999999999986 88
Q ss_pred chhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---
Q 000351 1010 LGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS--TAREVKRL--- 1084 (1623)
Q Consensus 1010 ~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~--~~r~l~~l--- 1084 (1623)
+|++++|+++|++.+...+...+..++..++.+++.++++++.+|.+.++++|+++++........+ ..++.++.
T Consensus 924 ~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1466)
T PTZ00265 924 PGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEIN 1003 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999988888888888888888888888888888777665544333222211111 11111111
Q ss_pred ----------HHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000351 1085 ----------DSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---M 1151 (1623)
Q Consensus 1085 ----------~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~ 1151 (1623)
+.+..+.....+.|+++|+++||+|+.++++.+++.+..+...+..........+.....+++..+ +
T Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1083 (1466)
T PTZ00265 1004 QPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSF 1083 (1466)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122234556788999999999999999999999999888877666554443333332222222222 2
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCC-C
Q 000351 1152 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-P 1230 (1623)
Q Consensus 1152 ~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~-~ 1230 (1623)
++.++.+. +..+..+ .+.+..++.+.+.....+..+...+..+.....+.+|+.++++.+++.+...+.... +
T Consensus 1084 ~~~~G~~l-v~~g~it-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~ 1157 (1466)
T PTZ00265 1084 AYWFGSFL-IRRGTIL-----VDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIK 1157 (1466)
T ss_pred HHHHHHHH-HHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccc
Confidence 22222222 2344444 333222222222223345667778888899999999999999865432211111110 0
Q ss_pred CCCCCCccEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----------------
Q 000351 1231 PGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----------------- 1292 (1623)
Q Consensus 1231 ~~wp~~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p----------------- 1292 (1623)
...+..|.|+|+||+|+|+++ ..+||+|+||+|+|||++||||+||||||||+++|+|+|+|
T Consensus 1158 ~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~ 1237 (1466)
T PTZ00265 1158 NKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMT 1237 (1466)
T ss_pred cCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccc
Confidence 012345789999999999642 23799999999999999999999999999999999999999
Q ss_pred -------------------------------------CCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcC
Q 000351 1293 -------------------------------------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 1335 (1623)
Q Consensus 1293 -------------------------------------~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd 1335 (1623)
++|+|+|||+||++++++++|++|+||||||+||+|||||||.
T Consensus 1238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~ 1317 (1466)
T PTZ00265 1238 NEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK 1317 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHh
Confidence 6999999999999999999999999999999999999999999
Q ss_pred CC-CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH
Q 000351 1336 PF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414 (1623)
Q Consensus 1336 ~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~I 1414 (1623)
++ .+.+|+++++|++.+++++||+++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|
T Consensus 1318 ~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I 1397 (1466)
T PTZ00265 1318 FGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397 (1466)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 76 35899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc--CCcEEEEeecCchhhhccCEEEEEeC----ceEe-eecChhHHhhcCCChHHHHHHH
Q 000351 1415 QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDS----GRVL-EYDTPEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1415 q~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~----G~iv-e~Gtp~eLl~~~~~~f~~l~~~ 1474 (1623)
+++|++.. +++|+|+||||++++.+||+|+||++ |+++ |.|+|+||+++.+|.|++|++.
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 99999874 68999999999999999999999999 9954 8999999998667899999864
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-87 Score=812.54 Aligned_cols=561 Identities=26% Similarity=0.362 Sum_probs=465.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCcc-CC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 904 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL-KT--HGPLFYNTIYSLLSFGQVLVTLANSYWLII 980 (1623)
Q Consensus 904 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~--~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~ 980 (1623)
..+.|.+.- |+.+...+++.++.....++.+.++....|.... .. ........+..++.+++.++++++.+++.+
T Consensus 137 rl~~l~~~~--~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~ 214 (716)
T KOG0058|consen 137 RLLGLLKPE--WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQY 214 (716)
T ss_pred HHHHHhchh--HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 3334444444455555566666555443332221 11 112224556677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 000351 981 SSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 1060 (1623)
Q Consensus 981 ~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1623)
.+.+...++|..++++++++.+.|||.+.+|++++|++.|...+.+.++..+...+.+....++.++++++.+|.+..+.
T Consensus 215 a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~ 294 (716)
T KOG0058|consen 215 AGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVT 294 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1061 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140 (1623)
Q Consensus 1061 ~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1140 (1623)
+..+.+...+.++|-+..|++.+..+++-+.......|.+++++|+|+|+.|+...++|.+.+++-.+.........-.+
T Consensus 295 ~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f 374 (716)
T KOG0058|consen 295 LIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF 374 (716)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 66666666677777777777777777777778888899999999999999999888888888777666554443333222
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000351 1141 AIRLEIVGGLMIWLTATF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 1218 (1623)
Q Consensus 1141 ~~~l~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~ 1218 (1623)
....++.+.+....+..+ ..+..+.++ .+.+--.+.|...+...+..+...++.+....+|.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt-----~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P 449 (716)
T KOG0058|consen 375 FGSTNLLGNLAVLSILFYGGHLVLTGSLT-----SGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP 449 (716)
T ss_pred HhHHHHHHhHHHHHHHHhccchhhcCccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence 223333333222222211 223445555 6666677788888999999999999999999999999999999655
Q ss_pred CCCccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEE
Q 000351 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297 (1623)
Q Consensus 1219 e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I 1297 (1623)
..+.. .. ..|. ..+|.|+|+||+|+|+.. ..+||||+||+|+|||+||+|||||+||||++++|.|+|+|++|+|
T Consensus 450 ~i~~~--G~-~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 450 RIPLT--GT-LAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCC--Cc-cccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 44322 11 1122 468999999999999643 2369999999999999999999999999999999999999999999
Q ss_pred EECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCC
Q 000351 1298 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376 (1623)
Q Consensus 1298 ~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~L 1376 (1623)
++||+||++++.++||++||+|.|||+||++||+|||.+. .+.+||+|.+|++.+++++||.++|+||||.|||+|..|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 9999999999999999999999999999999999999754 367999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecC
Q 000351 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1377 SgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gt 1456 (1623)
||||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+|||||+||+++|+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcCCChHHHHHHHh
Q 000351 1457 PEELLSNEGSSFSKMVQST 1475 (1623)
Q Consensus 1457 p~eLl~~~~~~f~~l~~~~ 1475 (1623)
|+||+++++|.|++|++.+
T Consensus 686 h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred HHHHhhCcccHHHHHHHHh
Confidence 9999999999999999764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-79 Score=778.68 Aligned_cols=549 Identities=29% Similarity=0.408 Sum_probs=470.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCC-CchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 916 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 993 (1623)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~~~-~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~l 993 (1623)
....-+++..++.+++...++.....-.|..-.... +... ...+++++++...++.+++.+.+.+.+.+....+-.++
T Consensus 154 ~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~ 233 (709)
T COG2274 154 RLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRF 233 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344445556666777777778777777776543322 2222 33445566777889999999999999999999999999
Q ss_pred HHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 994 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 1073 (1623)
Q Consensus 994 l~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 1073 (1623)
++|+++.|+.||.++++|++++|+ +|++.|.+.+...+...+..+..++..++++++.+|.++++++..++++..+..+
T Consensus 234 ~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~ 312 (709)
T COG2274 234 FRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLI 312 (709)
T ss_pred HHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5899999999999999999999999999999999999888877777777766666
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1074 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 1153 (1623)
Q Consensus 1074 y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 1153 (1623)
..+..|+.-+...+..+...++..|++.|+.|+|+.+.|.++..++++..++..+..+.......+......++..+..+
T Consensus 313 ~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v 392 (709)
T COG2274 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSV 392 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666777888999999999999999999999999999999988888887777776666665555544333
Q ss_pred HHHHHHH--HhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCC
Q 000351 1154 LTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 1231 (1623)
Q Consensus 1154 ~~~~~~v--~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~ 1231 (1623)
++..+.+ +..+..+ .|.+-...+....+++++..++..+..++....+.+|+.++++.|+|.+.. ..+..
T Consensus 393 ~iL~~G~~lVl~~~lT-----lG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~ 464 (709)
T COG2274 393 LILWFGAILVLEGELT-----LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIH 464 (709)
T ss_pred HHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---ccccc
Confidence 3333322 2334444 344444445556788899999999999999999999999999998885321 11344
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH
Q 000351 1232 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 1311 (1623)
Q Consensus 1232 ~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~ 1311 (1623)
.|+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~ 544 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544 (709)
T ss_pred ccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHH
Confidence 56678999999999999988788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1312 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+|++|||||||++||+||||||+...+ +.++|++++|++.+++++||+++|.||||.+||+|.+|||||||||+||||+
T Consensus 545 lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL 624 (709)
T COG2274 545 LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL 624 (709)
T ss_pred HHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999998765 4578999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHH
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~ 1470 (1623)
+++|+|||||||||+||++||+.|.+.|.+...+||+|+||||++++++||||+||++|||+|.|+|+||++. +|.|++
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~ 703 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYAR 703 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 788988
Q ss_pred HHHH
Q 000351 1471 MVQS 1474 (1623)
Q Consensus 1471 l~~~ 1474 (1623)
+++.
T Consensus 704 l~~~ 707 (709)
T COG2274 704 LYQQ 707 (709)
T ss_pred HHhc
Confidence 8764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-76 Score=756.55 Aligned_cols=546 Identities=31% Similarity=0.439 Sum_probs=443.2
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 918 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 997 (1623)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~l 997 (1623)
+.+.+++.++...+....++++....+...........+...++++.++..++.++..++..+.+.+...+++.++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l 95 (567)
T COG1132 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKL 95 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555666666655444433211112223444555555666777777778888888999999999999999
Q ss_pred hcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 998 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 1077 (1623)
Q Consensus 998 l~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~ 1077 (1623)
++.|+.+|+.+++|++++|+++|++.++..+......+...+..+++.+++++..+|.+.++++...+++.....++.+.
T Consensus 96 ~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 175 (567)
T COG1132 96 LRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175 (567)
T ss_pred HhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888775555556778888888888888877776666555555555555555
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000351 1078 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM---IWL 1154 (1623)
Q Consensus 1078 ~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~---~~~ 1154 (1623)
.+...+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+. +..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (567)
T COG1132 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLA 255 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777778889999999999999999999999977777766666555554433333333332222222222 222
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCC
Q 000351 1155 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 1234 (1623)
Q Consensus 1155 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp 1234 (1623)
.+.+. ...+..+ .+.+...+.+...+..++..+......++....+.+|+.++.+.+++... ...+ ..+
T Consensus 256 ~~~~~-~~~~~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~ 324 (567)
T COG1132 256 LGGFL-VLSGSLT-----VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKD 324 (567)
T ss_pred HHHHH-HHcCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCC
Confidence 22222 2333344 67777788888888999999999999999999999999999987554211 1111 234
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhh
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|.|||+||++++.+++|+
T Consensus 325 ~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 325 TIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred CCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence 56789999999999753 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHHhhcCCCCC-CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~~~-~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
+|++|||||+||+|||++||+++.+ ++|||+++|++.++++|+|+++|+||||.+||+|.+||||||||+|||||++++
T Consensus 404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998865 799999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHH
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
|+|||||||||+||++||+.|++++++..+++|+|+||||++|+.+||+|+|||+|+|+|+|+|+||+++ +|.|++|++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~ 562 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQ 562 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHH
Confidence 9999999999999999999999999988889999999999999999999999999999999999999987 789999997
Q ss_pred Hhh
Q 000351 1474 STG 1476 (1623)
Q Consensus 1474 ~~~ 1476 (1623)
.++
T Consensus 563 ~~~ 565 (567)
T COG1132 563 AQG 565 (567)
T ss_pred Hhh
Confidence 653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-74 Score=745.37 Aligned_cols=564 Identities=20% Similarity=0.254 Sum_probs=439.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCcc-C-C-CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 904 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL-K-T-HGPLFYNTIYSLLSFGQVLVTLANSYWLII 980 (1623)
Q Consensus 904 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~-~-~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~ 980 (1623)
.++.|.+... +.+++.+++.++...+....++.+.+..|.... . . .....+..+++++.++..++.+++.++...
T Consensus 12 ~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 12 WLKQQSKPAK--RWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred HHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555432 233344445555555555556555554443210 0 1 111223444555566677778888888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 000351 981 SSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 1060 (1623)
Q Consensus 981 ~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1623)
.+.+...+++.++++++++.|+.+|++.++|++++|+++|++.++..+...+..++..++.++..++++++.+|.+.+++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 169 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888888888888888888877665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1061 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140 (1623)
Q Consensus 1061 ~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1140 (1623)
+.++++...+...+.+..++..+...+..+.+.+.+.|.++|+++||+|++++++.+++.+..++..+..........+.
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555545555555555555555556667888899999999999999999999999998888877776655444444334
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhcCCccchh---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000351 1141 AIRLEIVGGLMIWLTA-TFAVVQNGSAENQE---A-FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 1215 (1623)
Q Consensus 1141 ~~~l~~~~~~~~~~~~-~~~v~~~~~~~~~~---~-~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~ 1215 (1623)
.....++..+..++++ .......+..+... . .....-..+.+...+..++..+...+..+.....+.+|+.++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 329 (588)
T PRK11174 250 SAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLE 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4333333332221111 11111112222100 0 01111122345556777888888889999999999999999998
Q ss_pred CCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCc
Q 000351 1216 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295 (1623)
Q Consensus 1216 ~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G 1295 (1623)
.|++.+.. ...+. ..+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|+| |++|
T Consensus 330 ~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 330 TPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred CCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 76543211 11000 11234579999999887654 57999999999999999999999999999999999999 9999
Q ss_pred EEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCC
Q 000351 1296 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374 (1623)
Q Consensus 1296 ~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~ 1374 (1623)
+|.+||+|+++++.+++|++|+||||||+||+|||||||..+ ++.+|+++++|++.++++++|+++|+|+||.+||+|.
T Consensus 405 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA 484 (588)
T ss_pred EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC
Confidence 999999999999999999999999999999999999999977 4689999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeee
Q 000351 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1375 ~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1454 (1623)
+|||||||||+||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHHHh
Q 000351 1455 DTPEELLSNEGSSFSKMVQST 1475 (1623)
Q Consensus 1455 Gtp~eLl~~~~~~f~~l~~~~ 1475 (1623)
|+|+||+++ ++.|++++..+
T Consensus 565 G~~~eL~~~-~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQA-GGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhc-chHHHHHHHHh
Confidence 999999976 46898888653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-74 Score=749.93 Aligned_cols=543 Identities=24% Similarity=0.357 Sum_probs=446.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 994 (1623)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~--~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll 994 (1623)
.+...+++.++...+....+++.....|......... ...+.+++++.++..++.+++.+.+...+.+...+++.+++
T Consensus 162 ~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~ 241 (711)
T TIGR00958 162 WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLF 241 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777766555432111111 12344455566667777888888889999999999999999
Q ss_pred HHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 995 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 1074 (1623)
Q Consensus 995 ~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y 1074 (1623)
+++++.|+.||++++.|+++||+++|++.++..+...+..++..+..+++.+++++..+|.+.++++..+++.+.+...+
T Consensus 242 ~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~ 321 (711)
T TIGR00958 242 RSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVF 321 (711)
T ss_pred HHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999888776666666666666666
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 000351 1075 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA---NRWLAIRLEIVGGLM 1151 (1623)
Q Consensus 1075 ~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~wl~~~l~~~~~~~ 1151 (1623)
.+..++..+...+..+...+++.|+++|+.+||+|+.++++.+++.+..++..+........ ..|....+..+..++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (711)
T TIGR00958 322 GKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVL 401 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667778889999999999999999999999888888888766655433322 233333333333333
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCC
Q 000351 1152 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 1231 (1623)
Q Consensus 1152 ~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~ 1231 (1623)
++.++... ...+.++ .+.+...+.|...+..++..+...+..+.....+.+|+.++.+.+++.+.. . ...
T Consensus 402 il~~g~~l-v~~g~it-----~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~ 471 (711)
T TIGR00958 402 VLYYGGQL-VLTGKVS-----SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLA 471 (711)
T ss_pred HHHHHHHH-HHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCC
Confidence 32222222 3455566 666777777888899999999999999999999999999999866543211 1 111
Q ss_pred CCCCCccEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH
Q 000351 1232 GWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 1310 (1623)
Q Consensus 1232 ~wp~~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~ 1310 (1623)
.++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+
T Consensus 472 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 472 PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 23456789999999999743 24799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
++|++|+||||||.+|+|||||||... .+.+|++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999865 4578999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHH
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~ 1469 (1623)
++++|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ ++.|+
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~ 708 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYK 708 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchH
Confidence 999999999999999999999999999 334578999999999999999999999999999999999999976 46788
Q ss_pred HHH
Q 000351 1470 KMV 1472 (1623)
Q Consensus 1470 ~l~ 1472 (1623)
+|+
T Consensus 709 ~lv 711 (711)
T TIGR00958 709 HLV 711 (711)
T ss_pred hcC
Confidence 763
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-73 Score=745.96 Aligned_cols=544 Identities=24% Similarity=0.295 Sum_probs=444.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 994 (1623)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~-~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll 994 (1623)
.+...+++.++..++....++.+..-.|....... . ...+..+++++.++..++.+++.+.....+.+...+++..++
T Consensus 137 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (686)
T TIGR03797 137 DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVW 216 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666555544321111 1 122344555666667788888999999999999999999999
Q ss_pred HHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 995 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 1074 (1623)
Q Consensus 995 ~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y 1074 (1623)
+++++.|+.||++.+.|++++|++ |++.+++.+...+...+.....++..+++++..+|++.++.+.++++++.+..+.
T Consensus 217 ~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 295 (686)
T TIGR03797 217 DRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVL 295 (686)
T ss_pred HHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 7888888887777776766666777777788888887776665555555555555
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1075 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 1154 (1623)
Q Consensus 1075 ~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 1154 (1623)
.+..+...+......+...+++.|+++|+.+||+++.++++.+++.+..+...+..+.....+.|......++..+...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 375 (686)
T TIGR03797 296 GLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAA 375 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55445555555556677889999999999999999999999999998888888877777766666665555444332222
Q ss_pred HHHHHH--HhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCC
Q 000351 1155 TATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 1232 (1623)
Q Consensus 1155 ~~~~~v--~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~ 1232 (1623)
+..+.. ...+..+ .|.+-.+..+...+..++..+...+..+.....+.+|+.++.+.|+|.+.. ... .
T Consensus 376 il~~g~~lv~~g~lt-----iG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~--~ 445 (686)
T TIGR03797 376 LFAAAISLLGGAGLS-----LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD--P 445 (686)
T ss_pred HHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--C
Confidence 222221 2345555 555555556667788889999999999999999999999999876654211 111 1
Q ss_pred CCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh
Q 000351 1233 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1233 wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1312 (1623)
.+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++++++
T Consensus 446 ~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 446 GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH
Confidence 12357899999999997655689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1313 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
|++|+||||||.+|+|||||||.++++.+|+++++|++.++++++++++|.|+||.+||+|.+||||||||++||||+++
T Consensus 526 r~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred HhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHH
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~ 1472 (1623)
+|+|||||||||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ ++.|++++
T Consensus 606 ~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~ 682 (686)
T TIGR03797 606 KPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLA 682 (686)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 99999999999999999999999999986 6899999999999999999999999999999999999975 57899888
Q ss_pred HH
Q 000351 1473 QS 1474 (1623)
Q Consensus 1473 ~~ 1474 (1623)
+.
T Consensus 683 ~~ 684 (686)
T TIGR03797 683 RR 684 (686)
T ss_pred Hh
Confidence 53
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-72 Score=727.21 Aligned_cols=546 Identities=25% Similarity=0.376 Sum_probs=438.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCC-CchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLF---YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 992 (1623)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~~~---~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ 992 (1623)
.+...+++.++...+....++++....|....... .... +..+++++.++..++.++..+.....+.+...+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 103 (592)
T PRK10790 24 PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTD 103 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777777777776664321111 1111 1223444445566677778888888999999999999
Q ss_pred HHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 993 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 1072 (1623)
Q Consensus 993 ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 1072 (1623)
+++++++.|+.+|+..+.|++++|+++|++.++..+...+..++..+..++..++++++.+|++.++.+..+++...+..
T Consensus 104 l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~ 183 (592)
T PRK10790 104 VMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMV 183 (592)
T ss_pred HHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888888888766554433333333333
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000351 1073 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGGLM 1151 (1623)
Q Consensus 1073 ~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~~~~~~ 1151 (1623)
.+.+..+...+......+....++.|+++|+.+||+|+.++++.+++.+..+...+........+.+. .....++..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (592)
T PRK10790 184 IYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALI 263 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444566778889999999999999999999999888887776665544433333222 22222322222
Q ss_pred HHHH-HHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCC
Q 000351 1152 IWLT-ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 1230 (1623)
Q Consensus 1152 ~~~~-~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~ 1230 (1623)
..++ ........+..+ .+.+...+.+...+..++..+...+..++....+.+|+.++.+.+++.+. ..
T Consensus 264 ~~~~~~~~~~~~~g~is-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~--- 332 (592)
T PRK10790 264 LCGLLMLFGFSASGTIE-----VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND--- 332 (592)
T ss_pred HHHHHHHHHHHHCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---
Confidence 1111 111112344444 55666667777888899999999999999999999999999876544211 11
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH
Q 000351 1231 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 1310 (1623)
Q Consensus 1231 ~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~ 1310 (1623)
..++..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++++
T Consensus 333 ~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 333 DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411 (592)
T ss_pred ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHH
Confidence 112345789999999999754 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
.+|++|+||||||.+|+||||+||.++++.+|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||+
T Consensus 412 ~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL 491 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL 491 (592)
T ss_pred HHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHH
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~ 1470 (1623)
+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+++ ++.|++
T Consensus 492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~ 570 (592)
T PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQ 570 (592)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999987 478999
Q ss_pred HHHHh
Q 000351 1471 MVQST 1475 (1623)
Q Consensus 1471 l~~~~ 1475 (1623)
+++.+
T Consensus 571 l~~~~ 575 (592)
T PRK10790 571 MYQLQ 575 (592)
T ss_pred HHHHH
Confidence 98653
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-73 Score=744.67 Aligned_cols=560 Identities=23% Similarity=0.313 Sum_probs=452.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 902 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLI 979 (1623)
Q Consensus 902 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~--~~~~~iy~~l~~~~~~~~~~~~~~~~ 979 (1623)
+..++.+++... ......+++.++..++....++.+....|......... ..+..+++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSR--GALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554322 22333444445555566666666665555432211111 12344455556667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 000351 980 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 1059 (1623)
Q Consensus 980 ~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1623)
..+.+...+++.++++++++.|+.||++.++|++++|++.| +.+...+...+...+..+..++..+++++..+|++.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 67887777777777888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1060 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 1139 (1623)
Q Consensus 1060 ~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w 1139 (1623)
.+.+++++..+..++.+..++..+......+...+.+.|+++|+.+||++++++.+.+++.+..+...+..........+
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666666666655556667778899999999999999999999999999888777777766655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 000351 1140 LAIRLEIVGGLMIWLTATFA--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 1217 (1623)
Q Consensus 1140 l~~~l~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~ 1217 (1623)
......++..+..+++..+. .+..+..+ .+.+...+.+...+..++..+...+..+.....+.+|+.++.+.+
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt-----~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 453 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLT-----IGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNP 453 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55554444433222222221 23345555 566666667777888899999999999999999999999999877
Q ss_pred CCCCccccC--C-CCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCC
Q 000351 1218 SEAPLVIES--N-RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294 (1623)
Q Consensus 1218 ~e~~~~~~~--~-~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~ 1294 (1623)
+|.+..... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 454 ~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 454 VDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred CccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 664321100 0 0111134467899999999998655689999999999999999999999999999999999999999
Q ss_pred cEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCC
Q 000351 1295 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373 (1623)
Q Consensus 1295 G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1373 (1623)
|+|.+||+|+++++++++|++|+||||||.+|+|||||||..++ +.+|+++++|++.++++++++++|.|+||.++|+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999998764 57999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEee
Q 000351 1374 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453 (1623)
Q Consensus 1374 ~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive 1453 (1623)
.+|||||||||+||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||||+||++|+|+|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 6899999999999999999999999999999
Q ss_pred ecChhHHhhcCCChHHHHH
Q 000351 1454 YDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1454 ~Gtp~eLl~~~~~~f~~l~ 1472 (1623)
.|+|+||+++ ++.|++++
T Consensus 692 ~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ecCHHHHHHc-CCcHHHHh
Confidence 9999999975 57788876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=743.06 Aligned_cols=557 Identities=21% Similarity=0.300 Sum_probs=448.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCC-c-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 902 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-P-LFYNTIYSLLSFGQVLVTLANSYWLI 979 (1623)
Q Consensus 902 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~-~~~~~iy~~l~~~~~~~~~~~~~~~~ 979 (1623)
+..++.|++.. ...+...+++.++..++....++++..+.|........ . ..+..+++++.+...++.+++.++..
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQ--KKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555533 22334445555666667777777777776654322111 1 12333444455666778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 000351 980 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 1059 (1623)
Q Consensus 980 ~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1623)
..+.+...+++.++++++++.|+.||+++++|++++|++ |.+.+.+.+.......+..+..++..++++++.+|.+.++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8888887776666666666666677777777788877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1060 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 1139 (1623)
Q Consensus 1060 ~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w 1139 (1623)
++..+++++.+..++.+..++..+......+...+.+.|+++|+.+||+|+.++++.+++.+..+...+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555556666666666666667777788899999999999999999999999888887777666655544433333
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000351 1140 LAIRL---EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 1216 (1623)
Q Consensus 1140 l~~~l---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~ 1216 (1623)
..... ..+..+++++++.+.+ ..+..+ .|.+.....+...+..++..+...+..+.....+++|+.++.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv-~~g~ls-----~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLV-MRGKLT-----LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33222 2222333333333333 355555 56666667777788889999999999999999999999999987
Q ss_pred CCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcE
Q 000351 1217 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296 (1623)
Q Consensus 1217 ~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~ 1296 (1623)
|+|.+... .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 455 ~~e~~~~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 455 DSEFINKK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred CCcccccc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 76643211 111223456789999999999744 57999999999999999999999999999999999999999999
Q ss_pred EEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCC--CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCC
Q 000351 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374 (1623)
Q Consensus 1297 I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~--~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~ 1374 (1623)
|++||+|+++++++++|++|+||||||.+|+|||||||..+ .+.+|+++++|++.++++++++++|.||||.++|+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999999999976 3679999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeee
Q 000351 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1375 ~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1454 (1623)
+|||||||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||+|+||++|+++|.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999974 78999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHH
Q 000351 1455 DTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1455 Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
|+|+||+++ ++.|+++++
T Consensus 690 G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCHHHHHhc-CCcHHHHhh
Confidence 999999986 578988874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-74 Score=735.83 Aligned_cols=513 Identities=24% Similarity=0.355 Sum_probs=414.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHH
Q 000351 953 PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 1032 (1623)
Q Consensus 953 ~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~ 1032 (1623)
...+...|..++++..+..++...++.+.+.|...++|.++++++||+++.|||++..|++..|++.|++.+++.+...+
T Consensus 70 ~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKv 149 (1228)
T KOG0055|consen 70 VSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKV 149 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHH
Confidence 34577788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHH
Q 000351 1033 NMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 1112 (1623)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~ 1112 (1623)
..++..+..+++.+++.++..|.+.++.+++.++.......+.+..-.....+..+-+..-+...|++.+++|+.||+.|
T Consensus 150 g~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq 229 (1228)
T KOG0055|consen 150 GNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGE 229 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 99999999999999999999998877665555544444333333333333333344445556778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHH
Q 000351 1113 DRMADINGKSMDKNIRYTLVNMGANRW----LAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITS 1188 (1623)
Q Consensus 1113 ~~~~~~~~~~~d~~~~~~~~~~~~~~w----l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~ 1188 (1623)
++..+++.+.++...|........... ..+.+....++.+|....+.. .+..+ ++.+...+..++.-..
T Consensus 230 ~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~--~~~~~-----~g~v~~v~~~vl~g~~ 302 (1228)
T KOG0055|consen 230 KKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLIL--NGGYN-----GGDVITVFFSVLIGGM 302 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--cCCCC-----CceEEEEEeehhhhhh
Confidence 999999999999888876543322111 111111112222222222222 12222 1111111111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCC-CCcccceeeEeCCC
Q 000351 1189 LLTAVLRLASLAENSLNAVERVGNYIEL-PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPS 1266 (1623)
Q Consensus 1189 ~l~~~~~~~~~~e~~~~aveRi~~~~~~-~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~-~~vL~~isl~I~~G 1266 (1623)
.++..........+...|..++.+.++- |+.++.. +... ..-..+|.|+|+||+|+|+... .++|+|+||+|++|
T Consensus 303 sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G 379 (1228)
T KOG0055|consen 303 SLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-KGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG 379 (1228)
T ss_pred hhhccccchHHHhccccchHHHHHHhcCCCCCCccc-ccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCC
Confidence 3344444555566677888999998873 3333221 1111 1123578999999999996432 27999999999999
Q ss_pred CEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHH
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADL 1345 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i 1345 (1623)
|.|||||+|||||||++++|.|+|+|++|+|+|||.|+++++.+++|++||+|.|+|+||++||+|||.+.. +++++++
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765 6799999
Q ss_pred HHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q 000351 1346 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1425 (1623)
Q Consensus 1346 ~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~ 1425 (1623)
.+|++.+++++||.++|.||||.+||+|..||||||||+||||||+++|+|||||||||+||+++|+.+|++|++..+|+
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr 539 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGR 539 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHHhh
Q 000351 1426 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1476 (1623)
Q Consensus 1426 TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~~~ 1476 (1623)
|+|+|||||+||+++|+|+||++|+|+|.|+|+||++++ |.|++|++.+.
T Consensus 540 TTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 540 TTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred eEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 999999999999999999999999999999999999987 99999997653
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=718.44 Aligned_cols=542 Identities=23% Similarity=0.309 Sum_probs=447.3
Q ss_pred HHHHHHHHHHHhhhhchhhhhcccCccCCCC-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000351 922 LLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLFY-NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 999 (1623)
Q Consensus 922 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~-~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ 999 (1623)
+++.++..++.....++++...+........ ...+ ...++++.++..++.+++.++....+.+....++..+++++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 110 (582)
T PRK11176 31 GVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMG 110 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444445455555665554433211111 1112 2223345566667777777888888999999999999999999
Q ss_pred CCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1000 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAR 1079 (1623)
Q Consensus 1000 ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r 1079 (1623)
.|..+|++.+.|++++|+++|++.+...+...+..++..++.++..++++++.+|++.++++..+++++++..+..+..+
T Consensus 111 ~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~ 190 (582)
T PRK11176 111 MPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFR 190 (582)
T ss_pred CCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888888888888888888777666555555555555555555
Q ss_pred HHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1080 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFA 1159 (1623)
Q Consensus 1080 ~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1159 (1623)
+..+......+.+.+++.|.++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777888999999999999999999999999999988888887777666666666665555443332222221
Q ss_pred --HHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCc
Q 000351 1160 --VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 1237 (1623)
Q Consensus 1160 --v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g 1237 (1623)
....+..+ .+.+..++++...+..++..+...+..+.....+.+|+.++.+.+++.+.. . ....|..+
T Consensus 271 ~~~~~~g~is-----~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~---~~~~~~~~ 340 (582)
T PRK11176 271 SFPSVMDTLT-----AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--K---RVIERAKG 340 (582)
T ss_pred HHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--C---cCCCCCCC
Confidence 12345555 677777777888888999999999999999999999999998866553211 1 11123456
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 79999999999765568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccccHHhhcCCCC--CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1318 IIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1318 ~vpQdp~Lf~gTIr~NLd~~~--~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
||||||++|+||||+||.... +++|++++++++.++++++++++|.|+||.+||+|.+|||||||||+||||++++|+
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998642 479999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHH
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~ 1474 (1623)
|||||||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|++|+++. +.|++|++.
T Consensus 501 ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~~ 578 (582)
T PRK11176 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHKM 578 (582)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHHH
Confidence 999999999999999999999999988899999999999999999999999999999999999999864 689998864
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=712.07 Aligned_cols=503 Identities=23% Similarity=0.328 Sum_probs=415.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHH
Q 000351 960 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 1039 (1623)
Q Consensus 960 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~ 1039 (1623)
+.++.++..++.++..++....+.+...+++.++++++++.|+.+|++.+.|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777788888888899999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHH
Q 000351 1040 SQLLSTFVLIGIVSTMSLWAIMPLLLLF-YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 1118 (1623)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~ 1118 (1623)
+.+++.++++++.+|.+.++++..++++ ..+..++.+..+...+......+.+.+.+.|.++|+++||+|+.++++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 8888888888888888776554333322 223344445545555555667788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccchhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000351 1119 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV-QNGSAENQEAFASTMGLLLSYA-LNITSLLTAVLRL 1196 (1623)
Q Consensus 1119 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~gl~l~~~-~~~~~~l~~~~~~ 1196 (1623)
+.+..++..+..........+.....+++..+...++..+... ..+..+ .+.+-.++.|. .....++..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t-----~g~l~a~~~~~~~~~~~~~~~l~~~ 300 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQ-----PGALIALFVFAALAAFEALMPVAGA 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888877776666655555555555444433322222221 123332 22222222222 3334566667777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCC
Q 000351 1197 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 1276 (1623)
Q Consensus 1197 ~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsG 1276 (1623)
+........+.+|+.++.+.+++.+.. ...++ .+..+.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||
T Consensus 301 ~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sG 376 (574)
T PRK11160 301 FQHLGQVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTG 376 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCC
Confidence 888888899999999999866542111 01111 13457899999999997644579999999999999999999999
Q ss_pred CChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHH
Q 000351 1277 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLK 1355 (1623)
Q Consensus 1277 SGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~ 1355 (1623)
||||||+++|.|+++|++|+|.+||+|+++++.+++|++|++|||||.+|++||||||.... +.+|++++++++.++++
T Consensus 377 sGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~ 456 (574)
T PRK11160 377 CGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLE 456 (574)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999998654 57999999999999999
Q ss_pred HHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCch
Q 000351 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1435 (1623)
Q Consensus 1356 ~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ 1435 (1623)
+++++ |+||||.+||+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++
T Consensus 457 ~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~ 535 (574)
T PRK11160 457 KLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLT 535 (574)
T ss_pred HHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChh
Confidence 99999 99999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHH
Q 000351 1436 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1436 ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
++.+||+|++|++|+++|.|+|+||+++ ++.|+++++
T Consensus 536 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 536 GLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 9999999999999999999999999976 578998875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=729.95 Aligned_cols=547 Identities=23% Similarity=0.328 Sum_probs=440.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 904 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIIS 981 (1623)
Q Consensus 904 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~-~~~~~iy~~l~~~~~~~~~~~~~~~~~~ 981 (1623)
.++.+++.. +..+...+++.++.+++....++.++.-.|....... .. ..+..+++++.++..++.+++.++....
T Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (694)
T TIGR03375 137 WFWSTLKES--WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVA 214 (694)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 2233344455555566666666666665554321111 11 1233344445556777888899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 000351 982 SLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIM 1061 (1623)
Q Consensus 982 ~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1623)
+.+...+++..+++++++.|+.| ++.++|++++|+ +|++.+.+.+...+...+..+..++..++++++.+|++.++.+
T Consensus 215 ~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 292 (694)
T TIGR03375 215 GKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPL 292 (694)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999998 788999999999 7999999988877777777777777777778888888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1062 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 1141 (1623)
Q Consensus 1062 ~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~ 1141 (1623)
..+++++.+..++.+..++..+......+...+.+.|+++|+.+||+|+.++.+.+++.+..++..+..+.....+.+..
T Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (694)
T TIGR03375 293 VAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLAT 372 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666666666666666778889999999999999999999999999888888777666665555444444
Q ss_pred HHHHHHHHH---HHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000351 1142 IRLEIVGGL---MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 1218 (1623)
Q Consensus 1142 ~~l~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~ 1218 (1623)
....++..+ ++++++++. +..+..+ .|.+-..+.+...+..++..+...+..+.....+.+|+.++.+.++
T Consensus 373 ~~~~~~~~~~~~~il~~g~~~-v~~g~ls-----~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 373 NFAQFIQQLVSVAIVVVGVYL-ISDGELT-----MGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333322 222222222 2345555 5666666777778888999999999999999999999999998776
Q ss_pred CCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEE
Q 000351 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298 (1623)
Q Consensus 1219 e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~ 1298 (1623)
|.+.. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 447 e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 447 ERPEG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred CCCCC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 54221 111111234578999999999976556799999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCC
Q 000351 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1377 (1623)
Q Consensus 1299 IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LS 1377 (1623)
+||+|+++++++++|++|+||||||++|+|||||||...+ +.+|+++++|++.++++++++++|.|+||.+||+|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 9999999999999999999999999999999999999775 479999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecCh
Q 000351 1378 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1378 gGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp 1457 (1623)
|||||||+||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|+||++|+++|.|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hHHhhc
Q 000351 1458 EELLSN 1463 (1623)
Q Consensus 1458 ~eLl~~ 1463 (1623)
+||+++
T Consensus 684 ~eLl~~ 689 (694)
T TIGR03375 684 DQVLEA 689 (694)
T ss_pred HHHHHH
Confidence 999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-71 Score=671.16 Aligned_cols=546 Identities=22% Similarity=0.286 Sum_probs=469.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 294 ALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQ-DGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRL 372 (1623)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i 372 (1623)
.+.+..++.+..+.++.++.......-|.+++++++.+.. .+....-.-.+..+.++.++++++.....+.....+.++
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888889999999999999999999999999877 332111122334445556666777777666666777788
Q ss_pred HHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000351 373 RSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLV 451 (1623)
Q Consensus 373 r~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~ 451 (1623)
-..++..+|++.++...+.+++..+|+++++++.|++.+.+.+ ..+....-+.++.+.++.+++..-.-.+++.++.++
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P 299 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVP 299 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhc
Confidence 8888888999999999999999999999999999999999865 567778888889988888888777778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 452 FMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILN 531 (1623)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~ 531 (1623)
+++.+..+++++.++..++.+++..+-.+...|.+++||+||+|+.|+...++..+.-++-++..+|...........++
T Consensus 300 ~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~ 379 (716)
T KOG0058|consen 300 IVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTN 379 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHH
Confidence 99999999999999999999999999999999999999999999999998888877777766666666555444444433
Q ss_pred HHH--HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCC
Q 000351 532 SIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT 609 (1623)
Q Consensus 532 ~~~--~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 609 (1623)
... ..++++.+|.+.+..+.+|++...+++.+-..+..++..+...++.++++..|.+|+.++++.++.........+
T Consensus 380 ~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p 459 (716)
T KOG0058|consen 380 LLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAP 459 (716)
T ss_pred HHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCcccc
Confidence 332 346677788888889999999999999999999999999999999999999999999999998876433311111
Q ss_pred -CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE------------
Q 000351 610 -SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 676 (1623)
Q Consensus 610 -~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------ 676 (1623)
.-...|+|+||+|+||.+++.++|+|+||+|+|||.||+||||||||||+.++|..+|+|++| .+.
T Consensus 460 ~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG-~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 460 DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG-RILLDGVPISDINHK 538 (716)
T ss_pred ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEECCeehhhcCHH
Confidence 234679999999999988888999999999999999999999999999999999999999999 443
Q ss_pred -EcCcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 677 -IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 677 -~~~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
++.+||+|.|||.||++||+|||.+|.+ .++|+++++.+.+..++.+..+|+|++|.|||+|..||||||||||||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH
Confidence 3457999999999999999999999965 57789999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcC-hhH
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELF 833 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~ 833 (1623)
|++||.||||||.|||||++++..+ +..+...++++|||+|+|+++.++.||+|+++++|+++|.|+|+||++.. +.|
T Consensus 619 Llr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly 697 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLY 697 (716)
T ss_pred HhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHH
Confidence 9999999999999999999987766 45667777899999999999999999999999999999999999999887 789
Q ss_pred HHhHHhhc
Q 000351 834 QKLMENAG 841 (1623)
Q Consensus 834 ~~~~~~~~ 841 (1623)
.+++..+.
T Consensus 698 ~~Lv~~q~ 705 (716)
T KOG0058|consen 698 AKLVQRQL 705 (716)
T ss_pred HHHHHHhc
Confidence 99886543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-73 Score=649.27 Aligned_cols=494 Identities=23% Similarity=0.390 Sum_probs=406.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHh
Q 000351 967 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 1046 (1623)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~ 1046 (1623)
+.++..+++++.......+.+.+-.++++|+....+.|+-....|+++.-..+-.+.+. .+...+.+....+.-+..++
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 45677788888999999999999999999999999999999999999888777776665 44444444444444444433
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHH
Q 000351 1047 VL-IGIVSTMSLWAIMPLLLLFYAAYL----YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 1121 (1623)
Q Consensus 1047 ~~-~~~~~~~~~~~~~~l~~~~~~i~~----~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~ 1121 (1623)
+. ....++|+.+++..++.+|..+.. +-.+..|++...+.++ ++.-.+++-+..|+|-|++++.-.+++.+
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nes----rAr~vDsllNFETVKyy~Ae~yEverYre 426 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNES----RARQVDSLLNFETVKYYNAEDYEVERYRE 426 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhh----hhhhhhhhhcchhhhccCchhhhHHHHHH
Confidence 32 233456766666555555443322 2222223333333333 34557889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1122 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASL 1199 (1623)
Q Consensus 1122 ~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~ 1199 (1623)
.++.+++..+.....-..+....+.+.++-......+.+. ..+..+ .|-.-+..+|.+++..+++++-..+..
T Consensus 427 Ail~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~lt-----VGDfVlf~TYliqLy~PLN~FGT~YR~ 501 (790)
T KOG0056|consen 427 AILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLT-----VGDFVLFLTYLIQLYMPLNFFGTYYRS 501 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeecccc-----ccceehHHHHHHHHhCchHHHHHHHHH
Confidence 9999999988877766666665555444333333322221 122222 555667889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCCh
Q 000351 1200 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 1279 (1623)
Q Consensus 1200 ~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGK 1279 (1623)
+++++.-.|++.+.++.++|. .+.+..+|---.+|.|+|+||+|.|.|+ +|||+||||+++||+.+|+|||||+||
T Consensus 502 iQ~nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGK 577 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGK 577 (790)
T ss_pred HHHhhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCch
Confidence 999999999999998755443 2322223333357999999999999887 489999999999999999999999999
Q ss_pred hhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHH
Q 000351 1280 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAI 1358 (1623)
Q Consensus 1280 STLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i 1358 (1623)
||++++|+|+++.++|.|.|||+||+++..+.+|++||+||||.+||+.||..||.... .++|||+.+|++.+++||-|
T Consensus 578 STimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrI 657 (790)
T KOG0056|consen 578 STIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRI 657 (790)
T ss_pred hHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998543 67999999999999999999
Q ss_pred HhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh
Q 000351 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1438 (1623)
Q Consensus 1359 ~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~ 1438 (1623)
.++|+||+|.|||+|-.||||||||+|+||++|++|.|++||||||+||..||+.||+++.+..+++|.|+||||++||.
T Consensus 658 l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTiv 737 (790)
T KOG0056|consen 658 LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIV 737 (790)
T ss_pred hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHH
Q 000351 1439 DCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1439 ~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~ 1474 (1623)
++|.|+|+++|+|+|.|+|+||+++++|.|++|++.
T Consensus 738 nAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 738 NADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred cccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 999999999999999999999999999999999964
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-71 Score=649.88 Aligned_cols=499 Identities=21% Similarity=0.320 Sum_probs=421.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHH
Q 000351 963 LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQL 1042 (1623)
Q Consensus 963 l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1042 (1623)
++++..+.-|..-+.......++-.++|.++++++...+..-......|+++||+..|++.+|..+-..+...+..+...
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 45566666677777788888999999999999999999988899999999999999999999999888888888888777
Q ss_pred hhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHH
Q 000351 1043 LSTFVLIGIVSTMSLWAIM-PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 1121 (1623)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~ 1121 (1623)
++..+...+.++.+.+.+. .+++....+...+.+..+...+.-...+..+++++.|.+.|....+.||..+++.+.+.+
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 7777777777776655443 334444555555666667776667778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000351 1122 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT-ATFAV-VQNGSAENQEAFASTMGLLLSYALNITSLLTAVL-RLAS 1198 (1623)
Q Consensus 1122 ~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-~~~~v-~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~-~~~~ 1198 (1623)
..+...+..........|-...+.++.+.++... ...+. ...|..+ ...+.+++..++.....+..+. ....
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~-----~~~aa~~ll~~f~~~eaf~~L~~~A~~ 301 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALA-----QPGAALALLVIFAALEAFEPLAPGAFQ 301 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcc-----hhHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 9999999999999999999999988887776633 33333 1122222 1111112222233334444444 5557
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCc-cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCC
Q 000351 1199 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG-SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 1277 (1623)
Q Consensus 1199 ~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g-~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGS 1277 (1623)
+......|..|+.+..+.++|.... +. ..|..+ .++++||+|+|+++.+++|+|+||++++||||||+|||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~-----~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFP-DE-----QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCC-cc-----ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCC
Confidence 7788889999999998866664322 11 111222 7999999999988877999999999999999999999999
Q ss_pred ChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHHhcHHH
Q 000351 1278 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKD 1356 (1623)
Q Consensus 1278 GKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~-~~~sd~~i~~aL~~~~l~~ 1356 (1623)
||||++++|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+.+|++|+|+||..- .+.|||++|+++++++|.+
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~ 455 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEK 455 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHH
Confidence 999999999999999999999999999999999999999999999999999999999754 3689999999999999999
Q ss_pred HHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 000351 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1436 (1623)
Q Consensus 1357 ~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~t 1436 (1623)
++++.|+||+|++||+|..|||||||||+|||+||++.+++||||||.+||++||+.|.+.|.+..+|+|+|+||||+..
T Consensus 456 l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~ 535 (573)
T COG4987 456 LLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG 535 (573)
T ss_pred HHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHH
Q 000351 1437 IIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1437 i~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
++.||||+||++|+++|.|+|.+|+++ +|.|+++++
T Consensus 536 le~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 536 LERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred HhhcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 999999999999999999999999984 678998874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-71 Score=659.35 Aligned_cols=508 Identities=24% Similarity=0.331 Sum_probs=431.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHH
Q 000351 955 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 1034 (1623)
Q Consensus 955 ~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~ 1034 (1623)
.+++..++..++..++...+.......+.++...+|..+++++.+.+..+-+..|+|++....+..++.++..+...+..
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666677777888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhH
Q 000351 1035 FMGQVSQLLSTFVLIGIVSTMSLW---AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1111 (1623)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~ 1111 (1623)
.+.+....+..++.+++.+|...+ +..|++++++.+.-. ..+...+....+-..+.++|.+.++|+.|+|+|+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~---~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~ 197 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL---AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGR 197 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 999999888888888888876544 445666655544322 12222223344556778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CCccchhhHHHHHHHHHHHHHHHHH
Q 000351 1112 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV--QN-GSAENQEAFASTMGLLLSYALNITS 1188 (1623)
Q Consensus 1112 ~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~--~~-~~~~~~~~~~~~~gl~l~~~~~~~~ 1188 (1623)
.+...++..+...+..+........+.--+..+|++..+.+.+++++... .. |..+ .+++. +++..+..+..
T Consensus 198 ~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~lt---l~~~l--~~LiLAPEff~ 272 (559)
T COG4988 198 TEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLT---LFAGL--FVLILAPEFFQ 272 (559)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---HHHHH--HHHHHhHHHHH
Confidence 99999999999999999888888888888899999988877777766553 22 3333 22222 33444566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCE
Q 000351 1189 LLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDK 1268 (1623)
Q Consensus 1189 ~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~Gek 1268 (1623)
++..+-..+....+...+.+.+..+.+.|.+.+...+ .....|.....|+++|++++|+++. ++++|+||+++||++
T Consensus 273 PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~ 349 (559)
T COG4988 273 PLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQL 349 (559)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcE
Confidence 8888888888888888889999999987765432211 1122233344567779999998664 899999999999999
Q ss_pred EEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCC-CCHHHHHH
Q 000351 1269 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWE 1347 (1623)
Q Consensus 1269 vgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~-~sd~~i~~ 1347 (1623)
+||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|+++++|||+|++|+|||||||..++. .+|+++++
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~ 429 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIA 429 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997765 78999999
Q ss_pred HHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEE
Q 000351 1348 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM 1427 (1623)
Q Consensus 1348 aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~Tv 1427 (1623)
+++++++.++++. |+|+||.+||+|.+|||||+|||+||||++++++++|+|||||+||.+||+.|++.|.+.++++||
T Consensus 430 al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktv 508 (559)
T COG4988 430 ALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508 (559)
T ss_pred HHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeE
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHHh
Q 000351 1428 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1475 (1623)
Q Consensus 1428 I~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~~ 1475 (1623)
|+||||++.+.++|+|+|||+||++|.|+|++|.++ ++.|++|+.++
T Consensus 509 l~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 509 LVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 999999999999999999999999999999999976 57899998653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-70 Score=703.30 Aligned_cols=546 Identities=23% Similarity=0.358 Sum_probs=460.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG--PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 994 (1623)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~--~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll 994 (1623)
.+++.+++.++..++....+++++...+........ ...+..+++++.+...++.+++.++....+.+....++..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 94 (571)
T TIGR02203 15 GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMF 94 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666554432211111 122344566677777788888899999999999999999999
Q ss_pred HHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 995 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 1074 (1623)
Q Consensus 995 ~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y 1074 (1623)
+++++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..++++++.+|++.++++.++++...+..++
T Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~ 174 (571)
T TIGR02203 95 EKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRV 174 (571)
T ss_pred HHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888777777777777777
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1075 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 1154 (1623)
Q Consensus 1075 ~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 1154 (1623)
.+..++..+......++..+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (571)
T TIGR02203 175 SKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAV 254 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778889999999999999999999999999999999988888877776666666666555544332222
Q ss_pred HHHH--HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCC
Q 000351 1155 TATF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 1232 (1623)
Q Consensus 1155 ~~~~--~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~ 1232 (1623)
+.++ .....+..+ .+.+...+.+...+..++..+...+..+.....+.+|+.++.+.+++.+.. ..+..
T Consensus 255 ~~~~g~~~~~~g~lt-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~- 325 (571)
T TIGR02203 255 VLFIALFQAQAGSLT-----AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE- 325 (571)
T ss_pred HHHHHHHHHHcCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC-
Confidence 2222 123455555 667777777888888999999999999999999999999999866553211 11111
Q ss_pred CCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh
Q 000351 1233 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1233 wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1312 (1623)
+..+.|+++||+|+|++..+++|+|+||+|+|||+++|+|+||||||||+++|.|+++|++|+|++||+|+++++.+++
T Consensus 326 -~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 326 -RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred -CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 2356799999999997655579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHHhhcCCCC--CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1313 RKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~gTIr~NLd~~~--~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
|++++||||||.+|+||||+||..+. +.+|++++++++.+++++++.++|.||||.++|+|.+||||||||+|||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999764 5899999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHH
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~ 1470 (1623)
+++|+|||||||||+||.+|++.|.+.|++..+++|+|+||||.+.+..||+|++|++|++++.|+|++++++ ++.|++
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~ 563 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQ 563 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999976 467777
Q ss_pred HHH
Q 000351 1471 MVQ 1473 (1623)
Q Consensus 1471 l~~ 1473 (1623)
++.
T Consensus 564 ~~~ 566 (571)
T TIGR02203 564 LHN 566 (571)
T ss_pred HHH
Confidence 664
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-70 Score=714.41 Aligned_cols=560 Identities=22% Similarity=0.315 Sum_probs=448.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 902 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLI 979 (1623)
Q Consensus 902 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~-~~~~~~iy~~l~~~~~~~~~~~~~~~~ 979 (1623)
+..++.+++... ..+...+++.++..++....++.+..-.|....... . ...+..+++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~--~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYR--KQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554322 223334444445555555556666655554321111 1 122344455566667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 000351 980 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 1059 (1623)
Q Consensus 980 ~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1623)
..+.+....++.++++++++.|+.||++.++|++++|+ +|++.+.+.+...+...+..+..++..++++++.+|.+.++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 69999998887777776666666666677788888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1060 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 1139 (1623)
Q Consensus 1060 ~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w 1139 (1623)
++..++++..+..+..+..++..+...+..+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..+.....+.+
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555544444444444444456677889999999999999999999999999998888877777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 000351 1140 LAIRLEIVGGLMIWLTATF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 1217 (1623)
Q Consensus 1140 l~~~l~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~ 1217 (1623)
.....+++..+..+++..+ .....+.++ .|.+.....+...+..++..+...+..++....+.+|+.++.+.|
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it-----~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 438 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALS-----PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSP 438 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555554443322222222 122345555 555556667777888899999999999999999999999999877
Q ss_pred CCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEE
Q 000351 1218 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297 (1623)
Q Consensus 1218 ~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I 1297 (1623)
+|.+.. ...+.+ ...|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|
T Consensus 439 ~e~~~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 439 TEPRSA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CCccCC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 654211 111111 2357899999999997665679999999999999999999999999999999999999999999
Q ss_pred EECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCC
Q 000351 1298 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376 (1623)
Q Consensus 1298 ~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~L 1376 (1623)
++||+|+++++.+++|++++||||||.+|+|||||||...+ +.++++++++++.++++++++++|.|+||.++++|.+|
T Consensus 515 ~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred EECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 99999999999999999999999999999999999998754 57899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecC
Q 000351 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1377 SgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gt 1456 (1623)
|||||||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCCChHHHHHHH
Q 000351 1457 PEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1457 p~eLl~~~~~~f~~l~~~ 1474 (1623)
|++|+++ ++.|+++++.
T Consensus 675 ~~~l~~~-~~~y~~l~~~ 691 (694)
T TIGR01846 675 HEELLAL-QGLYARLWQQ 691 (694)
T ss_pred HHHHHHc-CChHHHHHHh
Confidence 9999986 4789998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-69 Score=695.40 Aligned_cols=542 Identities=21% Similarity=0.262 Sum_probs=432.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 292 LRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDG-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGF 370 (1623)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 370 (1623)
++...+.+++.++.++++.++..++..++|++++.+++.+..++ .....+.++++++++.++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888899999999999999999999999999764221 11222333444555556667777777777788999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000351 371 RLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALL 449 (1623)
Q Consensus 371 ~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~ 449 (1623)
++...++..+|+|.++++.....+.++|++++++++|++++.+.+. .+..++...+.+++++++++..-++.+++.+++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764 566666666666666666655544555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 450 LVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFI 529 (1623)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~ 529 (1623)
+++.+.+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+.-++..+...+..........+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK11174 173 APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAV 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667778888889999999999999999999999999999999999988888555444333333332222222222
Q ss_pred HHHHHHH--HHHHHHHHHHHhCCCcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000351 530 LNSIPVL--VTVVSFGMFTLLGGDLTP---------ARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAE 598 (1623)
Q Consensus 530 ~~~~~~~--~~~~~f~~~~~~~~~lt~---------~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~ 598 (1623)
......+ +.++.++.+.+. +.++. ..++.++.+...+..|+..++..+..+.++.++++||.++++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 331 (588)
T PRK11174 253 LEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETP 331 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2221111 112223333333 33333 34555566777788999999999999999999999999999876
Q ss_pred ccccCCCC-CCC-CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE
Q 000351 599 EKILLPNP-PLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV 676 (1623)
Q Consensus 599 e~~~~~~~-~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~ 676 (1623)
+....... ..+ .....|+++|++|.|++ ++++|+|+||+|++|++++||||||||||||+++|+|++ |++| .+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G-~I~ 407 (588)
T PRK11174 332 LAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG-SLK 407 (588)
T ss_pred CcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc-EEE
Confidence 53211111 111 12235999999987764 367999999999999999999999999999999999999 8888 554
Q ss_pred EcC-------------cEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccC
Q 000351 677 IRG-------------TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742 (1623)
Q Consensus 677 ~~~-------------~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 742 (1623)
+.+ +|+||||+|++|++||||||.+|++ .++++++++++.|+++++++.+|+|++|.+||+|.+||
T Consensus 408 i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred ECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 443 6999999999999999999999965 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000351 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 743 GGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 822 (1623)
|||||||+||||++++|+|+|||||||+||+++++.|.+.+ ....+++|+|+|||+++.++.||+|++|++|+|+++|+
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l-~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCC
Confidence 99999999999999999999999999999999999999754 55568999999999999999999999999999999999
Q ss_pred hhHHhhcChhHHHhHHh
Q 000351 823 FEDLSNNGELFQKLMEN 839 (1623)
Q Consensus 823 ~~~l~~~~~~~~~~~~~ 839 (1623)
|+|++++++.|++++..
T Consensus 567 ~~eL~~~~~~y~~l~~~ 583 (588)
T PRK11174 567 YAELSQAGGLFATLLAH 583 (588)
T ss_pred HHHHHhcchHHHHHHHH
Confidence 99999998889888754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=679.69 Aligned_cols=545 Identities=23% Similarity=0.343 Sum_probs=477.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 290 WLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVG 369 (1623)
Q Consensus 290 ~L~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 369 (1623)
+-++-.+.-+++.+.-.++..++..++.++.|++.+.++|.+-.......-+.+++++.+..+..+++...-.+....++
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778888889999999999999999999999876555444456666677777777777777777888899
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000351 370 FRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGAL 448 (1623)
Q Consensus 370 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~ 448 (1623)
.|+...+...+|+|.++++...+++.++|++++++ +|.+.|.+++. .+.......+.+++.+.+++.+-+..++++++
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~ 301 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLA 301 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 57999999764 44444444445555666777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 449 LLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSF 528 (1623)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~ 528 (1623)
.+++.+.+..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..++++.-.+..+...+..........
T Consensus 302 ~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 381 (709)
T COG2274 302 AIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNT 381 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888877777776
Q ss_pred HHHHHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC-
Q 000351 529 ILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN- 605 (1623)
Q Consensus 529 ~~~~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~- 605 (1623)
+...+..+ +.++.||++.++.+.+|.|..+++.++.+.+..|+..+.+.+..+.+++.+.+|+.+.++.|.+.+.+.
T Consensus 382 ~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~ 461 (709)
T COG2274 382 IKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT 461 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 66655544 456788899999999999999999999999999999999999999999999999999999876533222
Q ss_pred -CCCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------
Q 000351 606 -PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------- 677 (1623)
Q Consensus 606 -~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------- 677 (1623)
.........|+++|++|+|+++ ++++|+|+||+|++||+++|||+||||||||+|+|+|.++|.+| .+.+
T Consensus 462 ~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G-~I~~dg~dl~~ 539 (709)
T COG2274 462 LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG-RILLDGVDLND 539 (709)
T ss_pred cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEeHHh
Confidence 1122334679999999999864 45899999999999999999999999999999999999999999 5443
Q ss_pred ------cCcEEEEccCcccCcccHHHHHhcCCCC-CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 678 ------RGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 678 ------~~~iay~~Q~~~l~~~Tv~enI~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
|..|+||+|++.+|+|||+|||.++.|. +.|+..++++.++.++++..+|.|++|.+||+|.+||||||||++
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrla 619 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619 (709)
T ss_pred cCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 4579999999999999999999999875 458899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
||||++++|+|+||||||||||+++++.|.+++.. ..+|+|+|+||||+..++.||+|+||++|+|+++|+++|+++.+
T Consensus 620 lARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~ 698 (709)
T COG2274 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698 (709)
T ss_pred HHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH-HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhc
Confidence 99999999999999999999999999999987654 56789999999999999999999999999999999999999998
Q ss_pred hhHHHhHH
Q 000351 831 ELFQKLME 838 (1623)
Q Consensus 831 ~~~~~~~~ 838 (1623)
+.|..++.
T Consensus 699 g~y~~l~~ 706 (709)
T COG2274 699 GLYARLYQ 706 (709)
T ss_pred ChHHHHHh
Confidence 88887764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-69 Score=692.66 Aligned_cols=548 Identities=22% Similarity=0.306 Sum_probs=431.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 996 (1623)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ 996 (1623)
.+.+++++.++..++....++++....|..... .....+..+++++.++..+..++..........+....+..+++++
T Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 98 (588)
T PRK13657 20 LGILLAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFER 98 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777776665543221 1111223333333333333333344444444555555666799999
Q ss_pred HhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 997 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 1076 (1623)
Q Consensus 997 ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~ 1076 (1623)
+++.|..+|++.+.|++++|+++|++.+...+...+..++..++..+..+++++..+|++.++++.++++++.+..++.+
T Consensus 99 l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~ 178 (588)
T PRK13657 99 IIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMR 178 (588)
T ss_pred HHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998777666766666666667777777788887777666666666666666666
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1077 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 1156 (1623)
Q Consensus 1077 ~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 1156 (1623)
..++..+......+.+.+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+..+++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (588)
T PRK13657 179 KTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAIL 258 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66776666677778889999999999999999999999998888888877776655554444444443333322222221
Q ss_pred HH--HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCC
Q 000351 1157 TF--AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 1234 (1623)
Q Consensus 1157 ~~--~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp 1234 (1623)
.+ .....+..+ .+.+..++.++..+..++..+...+..+.....+.+|+.++.+.+++.+.. ....+. -+
T Consensus 259 ~~g~~~v~~g~lt-----~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~-~~ 330 (588)
T PRK13657 259 VLGAALVQKGQLR-----VGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDL-GR 330 (588)
T ss_pred HHHHHHHHcCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCc-CC
Confidence 11 223455555 566666667777788888888888888888889999999887754332111 010000 02
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhh
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
..+.|+++||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|+
T Consensus 331 ~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 331 VKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 34679999999999743 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
+|+||||||.+|+||||+||..+. +.+|++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 5789999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHH
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 568 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLR 568 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHH
Confidence 9999999999999999999999999998789999999999999999999999999999999999999976 578998886
Q ss_pred Hh
Q 000351 1474 ST 1475 (1623)
Q Consensus 1474 ~~ 1475 (1623)
..
T Consensus 569 ~~ 570 (588)
T PRK13657 569 AQ 570 (588)
T ss_pred Hh
Confidence 43
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=637.47 Aligned_cols=507 Identities=24% Similarity=0.342 Sum_probs=391.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHH
Q 000351 954 LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 1033 (1623)
Q Consensus 954 ~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~ 1033 (1623)
..-+..|.+..+++.+++.++.+.+.....++-+....+.+++.++..+++|....+|.+.+....-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 44677899999999999999999999999999999999999999999999999999999988888777777777766666
Q ss_pred HHHHHHHHHhhHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhH
Q 000351 1034 MFMGQVSQLLSTFVLIGIV-STMSLWAIMPLLLLFYAAYLYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1111 (1623)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~y-~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~ 1111 (1623)
.++..++.+......+.+- .+.+.++++..+. .|..+-.+ .+...+.|+....+........-|++.+-.+||+|+.
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~-~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVG-AYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 6666655554444333332 2333333322222 23222211 1112223333444455556677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCccchhhHHHHHHHHHHHHHHHHHH
Q 000351 1112 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV--QNGSAENQEAFASTMGLLLSYALNITSL 1189 (1623)
Q Consensus 1112 ~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~gl~l~~~~~~~~~ 1189 (1623)
|++..+++...+....+......+....+.+-..++.......+..+... ..+..+ .+-+-+.-+...++..+
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mt-----vgdlv~~n~l~~qL~~~ 307 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMT-----VGDLVMVNSLLFQLSLP 307 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-----ccchhhHHHHHHHHHhH
Confidence 99999999999998888876666555555554444443332222222221 112222 22333334444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEE
Q 000351 1190 LTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKV 1269 (1623)
Q Consensus 1190 l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~Gekv 1269 (1623)
+..+-..+..+...+.-.+-+....+ .+. ...+. +.+.-...|.|+|+||+|.|+|+ +++|+++||+|++||||
T Consensus 308 l~~Lg~vyr~~~q~l~Dm~~~~~l~~--~~~-~i~~~--~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 308 LNFLGSVYRELRQALTDMRTLFILLE--VDE-DIQEA--ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKV 381 (591)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhh--hhh-hhhhc--cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEE
Confidence 66665555555554444333322211 111 01111 11222345679999999999876 46999999999999999
Q ss_pred EEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHH
Q 000351 1270 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEA 1348 (1623)
Q Consensus 1270 gIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~a 1348 (1623)
||||+|||||||++++|+|+++ ++|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|+|+.++
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~ 460 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEA 460 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999999999999998554 5799999999
Q ss_pred HHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Q 000351 1349 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1428 (1623)
Q Consensus 1349 L~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI 1428 (1623)
+++++++|.+.++|+||+|.|||+|..||||||||++||||++++|+|+++|||||+||.+||+.|.++|.+...++|+|
T Consensus 461 ~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057|consen 461 CKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHH
Q 000351 1429 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1429 ~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~ 1474 (1623)
+|+||++++++||+|++|++|+|+|.|+|+||++ +++.|..++..
T Consensus 541 ~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 541 MIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 9999999999999999999999999999999998 67778877754
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-69 Score=687.79 Aligned_cols=507 Identities=22% Similarity=0.284 Sum_probs=401.2
Q ss_pred HHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 920 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI--YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 997 (1623)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i--y~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~l 997 (1623)
..+++.++..++....++.+++..|...........+..+ .+++.++..++.++..++....+.+...+++.++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 96 (529)
T TIGR02868 17 VAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRL 96 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555544322111111111111 12244556667777788888888999999999999999
Q ss_pred hcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000351 998 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFY-AAYLYYQS 1076 (1623)
Q Consensus 998 l~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~i~~~y~~ 1076 (1623)
++.|..||++.++|++++|+++|++.++..+...+..++..+..++..++++++.+|.+.++++..+++++ ....++.+
T Consensus 97 l~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~ 176 (529)
T TIGR02868 97 ARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLR 176 (529)
T ss_pred hccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888888888888887776555443333 33344444
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1077 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 1156 (1623)
Q Consensus 1077 ~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 1156 (1623)
..++..+......+.+.+++.|.++|+++||+|+.++.+.+++.+..+...+..........+......++..+..+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (529)
T TIGR02868 177 AARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGAL 256 (529)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555455556678889999999999999999999999999999888877776655554444444444443333222222
Q ss_pred HHH--HHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCC
Q 000351 1157 TFA--VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 1234 (1623)
Q Consensus 1157 ~~~--v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp 1234 (1623)
.+. ....+..+ .+.+...+.++..+..++..+...+..+.....+.+|+.++.+.+++.+.. +...+...+|
T Consensus 257 ~~g~~~~~~g~~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~ 330 (529)
T TIGR02868 257 WAGGPAVADGTLA-----PATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGL 330 (529)
T ss_pred HHHHHHHhCCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCC
Confidence 221 13345555 566666777777888888899999999999999999999999866553211 1111111234
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhh
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|++++ .+++|+
T Consensus 331 ~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~ 408 (529)
T TIGR02868 331 GKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRR 408 (529)
T ss_pred CCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHh
Confidence 45789999999999754 3699999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
+|+||||||++|+|||||||..+. +.+|+++++|++.++++++++++|+||||.+||+|.+||||||||||||||++++
T Consensus 409 ~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 409 RISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred heEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999754 5799999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCc
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1434 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl 1434 (1623)
|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999988999999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=689.22 Aligned_cols=543 Identities=21% Similarity=0.253 Sum_probs=455.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 290 WLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVG 369 (1623)
Q Consensus 290 ~L~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 369 (1623)
++++..++.+++.++..++..++..++.++.|++++.++|.+-.......-+.++++++++.++..++.....+...+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888889999999999999999999999998764332222333444455555566666666677788899
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000351 370 FRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGAL 448 (1623)
Q Consensus 370 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~ 448 (1623)
.++...++..+|+|.++++....++.++|+++++++ |++.+.+.+. .+.......+.+++++++++...++.+++.++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999889999999999997 8999988653 23333333344455666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 449 LLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSF 528 (1623)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~ 528 (1623)
++++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+..........
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888889999999999999999999999999999999999999999999988888777776666666665555
Q ss_pred HHHHHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q 000351 529 ILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP 606 (1623)
Q Consensus 529 ~~~~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 606 (1623)
+...+..+ +.++.+|.+.+..+.+|.+.++++..++..+..|+..++..+..+.++.++++|+.++++.++.......
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 443 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKT 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC
Confidence 54444333 2344566677778899999999999999999999999999999999999999999999987553221111
Q ss_pred CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------
Q 000351 607 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------- 677 (1623)
Q Consensus 607 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------- 677 (1623)
........|+++|++|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++| .+.+
T Consensus 444 ~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~ 521 (686)
T TIGR03797 444 DPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG-SVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcCcCC
Confidence 111123469999999999743 46899999999999999999999999999999999999999999 4443
Q ss_pred ----cCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 678 ----RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 678 ----~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
++.||||||+|++|++||+|||.++++.+++++.++++.|+++++++.+|+|++|.+||+|.+||||||||++|||
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhH
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 833 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 833 (1623)
|++++|+|+|||||||+||+++++++.+.+... ++|+|+|||+++.++.||+|++|++|+|+++|++++++++++.|
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y 678 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLF 678 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 999999999999999999999999999876542 58999999999999999999999999999999999999988888
Q ss_pred HHhHH
Q 000351 834 QKLME 838 (1623)
Q Consensus 834 ~~~~~ 838 (1623)
.++..
T Consensus 679 ~~l~~ 683 (686)
T TIGR03797 679 AQLAR 683 (686)
T ss_pred HHHHH
Confidence 88764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-68 Score=683.94 Aligned_cols=548 Identities=24% Similarity=0.367 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhhcccCccCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 919 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 996 (1623)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~-~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ 996 (1623)
.+.+++.++..++....++.+..-.+....... . ...+..+++++.+...++.+++.++....+.+....++..++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 100 (576)
T TIGR02204 21 LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAH 100 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555655555555544443111111 1 11233344444555566677788888888999999999999999
Q ss_pred HhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 997 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 1076 (1623)
Q Consensus 997 ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~ 1076 (1623)
+++.|..+|+....|++++|+++|++.++..+...+..++..+..+++.+++++..+|++.++++..+++++.+..++.+
T Consensus 101 l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~ 180 (576)
T TIGR02204 101 LISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGR 180 (576)
T ss_pred HHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888888888888776655555555555555555
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1077 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 1156 (1623)
Q Consensus 1077 ~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 1156 (1623)
..+...+.....+....+++.|.++|+.+||+|+.++.+.+++.+..+...+..........|......++..+..++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (576)
T TIGR02204 181 RVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVL 260 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667778888999999999999999999999998888888877666555554555554444333322221111
Q ss_pred --HHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCC
Q 000351 1157 --TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 1234 (1623)
Q Consensus 1157 --~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp 1234 (1623)
+......+..+ .+.+..+..+...+..++..+...+..+.....+.+|+.++.+.+++.+... ......+|
T Consensus 261 ~~g~~~v~~g~lt-----~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~ 333 (576)
T TIGR02204 261 WVGAHDVIAGKMS-----AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVP 333 (576)
T ss_pred HHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcC
Confidence 11123345555 6666677777888888999999999999999999999999987655422111 11111234
Q ss_pred CCccEEEEEEEEEeCCCC-CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhh
Q 000351 1235 SSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1313 (1623)
..+.|+|+||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 334 ~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 334 LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred CCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 456799999999997532 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1314 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
++++|+||||.+|+|||||||.+.. +.+|++++++++.+++.++++++|.|+||.++|+|.+||||||||++||||+++
T Consensus 414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred HhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754 568999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHH
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~ 1472 (1623)
+|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||||++|++|+++|.|+|++++++ ++.|++|+
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~ 572 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLA 572 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999874 57888887
Q ss_pred HH
Q 000351 1473 QS 1474 (1623)
Q Consensus 1473 ~~ 1474 (1623)
+.
T Consensus 573 ~~ 574 (576)
T TIGR02204 573 RL 574 (576)
T ss_pred hh
Confidence 53
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=676.69 Aligned_cols=546 Identities=20% Similarity=0.268 Sum_probs=428.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 996 (1623)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ 996 (1623)
.++..+++.++..++....++.+++..|..... .....+..+++++.+...+..++..........+...+++.+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 98 (585)
T TIGR01192 20 RVLLIVIANITLAAITIAEPILFGRIIDAISSK-SDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGR 98 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666555432211 1111222222223333333334444444455555666677799999
Q ss_pred HhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 997 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 1076 (1623)
Q Consensus 997 ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~ 1076 (1623)
+++.|+.||+++++|++++|+++|++.+...+...+...+..++.++..+++++..+|.+.++++.++++++.+...+.+
T Consensus 99 l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 178 (585)
T TIGR01192 99 IISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQ 178 (585)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777777777777777777778888888877766666666666666666
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000351 1077 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 1153 (1623)
Q Consensus 1077 ~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~ 1153 (1623)
..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..+.......+......++..+ +++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 258 (585)
T TIGR01192 179 RTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCIL 258 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66776666677778889999999999999999999999888888877766655544333333332222222222 222
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCC
Q 000351 1154 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 1233 (1623)
Q Consensus 1154 ~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~w 1233 (1623)
+++.+. ...+..+ .+.+..++.++..+..++..+...+..+.....+.+|+.+..+.+++... ...+ ..+
T Consensus 259 ~~g~~~-v~~g~it-----~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~-~~~ 328 (585)
T TIGR01192 259 VIGTVL-VIKGELS-----VGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADA-PEL 328 (585)
T ss_pred HHHHHH-HHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccC-CCC
Confidence 222222 3345555 55565666777777888888888888888889999999998875543211 1111 112
Q ss_pred -CCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh
Q 000351 1234 -PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1234 -p~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1312 (1623)
+..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||+|+.+++.+.+
T Consensus 329 ~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 329 PNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred CCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 234679999999999754 369999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhh
Q 000351 1313 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1391 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL 1391 (1623)
|+++++|||||.+|++|+|+||..+. +.+|++++++++.+++++++.++|+|+||.++++|.+||||||||++|||||+
T Consensus 408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998763 56899999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHH
Q 000351 1392 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471 (1623)
Q Consensus 1392 ~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l 1471 (1623)
++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++++++ ++.|+++
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l 566 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKL 566 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHH
Confidence 999999999999999999999999999998889999999999999999999999999999999999999975 4789998
Q ss_pred HHHh
Q 000351 1472 VQST 1475 (1623)
Q Consensus 1472 ~~~~ 1475 (1623)
++..
T Consensus 567 ~~~~ 570 (585)
T TIGR01192 567 LRRS 570 (585)
T ss_pred HHhC
Confidence 8654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-68 Score=678.45 Aligned_cols=508 Identities=21% Similarity=0.283 Sum_probs=411.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHH
Q 000351 956 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 1035 (1623)
Q Consensus 956 ~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~ 1035 (1623)
+..+++++.++..++.++..++....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+...+...+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455555556666777777777888899999999999999999999999999999999999999999987666666666
Q ss_pred HHHHHHHhhHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHH
Q 000351 1036 MGQVSQLLSTFVLI-GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 1114 (1623)
Q Consensus 1036 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~ 1114 (1623)
+..+...+..++++ ++.+|.+.++++..+++++.+...+.+..++..+......+.+.+.+.|+++|+.+||+|+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 66655555444444 45667665555444444444455554444444445555667888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000351 1115 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW--LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 1192 (1623)
Q Consensus 1115 ~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~ 1192 (1623)
+.+++.+..+...+..........+.......+..+..+ +..+...+..+..+ .+.+..++.+...+..++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt-----~g~l~a~~~~~~~~~~pl~~ 272 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLT-----LGQLTSFVMYLGLMIWPMLA 272 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----HHHHHHHHHHHHHHHHHHHH
Confidence 999888887776666555444433333322222221111 11111223355555 55555566677777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEe
Q 000351 1193 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 1272 (1623)
Q Consensus 1193 ~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIv 1272 (1623)
+...+..+.....+.+|+.++.+.+++.+.. ....+ +..+.|+++||+|+|+++.+++|+|+||+|+|||++||+
T Consensus 273 l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~iv 347 (569)
T PRK10789 273 LAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGIC 347 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEE
Confidence 8888999999999999999998865442111 11111 234679999999999765457999999999999999999
Q ss_pred cCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHH
Q 000351 1273 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALER 1351 (1623)
Q Consensus 1273 GrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~-~~~sd~~i~~aL~~ 1351 (1623)
||||||||||+++|.|+++|++|+|.+||.|+++++.+++|+++++|||+|.+|++|+|+||..+ .+.+|++++++++.
T Consensus 348 G~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~ 427 (569)
T PRK10789 348 GPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARL 427 (569)
T ss_pred CCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876 35799999999999
Q ss_pred hcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 000351 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1431 (1623)
Q Consensus 1352 ~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~Ia 1431 (1623)
+++++++.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||
T Consensus 428 ~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it 507 (569)
T PRK10789 428 ASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA 507 (569)
T ss_pred cCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987899999999
Q ss_pred cCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHH
Q 000351 1432 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1432 Hrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~ 1474 (1623)
||++++..||+|++|++|+++|.|+|++|+++ .+.|+++++.
T Consensus 508 H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~ 549 (569)
T PRK10789 508 HRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRY 549 (569)
T ss_pred cchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHH
Confidence 99999999999999999999999999999975 4689988865
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-67 Score=687.75 Aligned_cols=539 Identities=22% Similarity=0.274 Sum_probs=456.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 293 RALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRL 372 (1623)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i 372 (1623)
+..++.+++.++..++..++..++.++.|++++.+++.+.........+.++++++++.++..++.....+...+++.++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888999999999999999999997764333222334444455555566666666677788899999
Q ss_pred HHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000351 373 RSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLV 451 (1623)
Q Consensus 373 r~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~ 451 (1623)
...++..+|+|.++++....++.++|+++++++.| +.+.+++. .+..+....+.+++.+++++...++.+++.++.++
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999988 67887653 45556666666677777777777777888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 452 FMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILN 531 (1623)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~ 531 (1623)
+.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++...++.+...+..........+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888899999999999999999999999999999999999999999999988888877776666655554444
Q ss_pred HHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC----
Q 000351 532 SIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN---- 605 (1623)
Q Consensus 532 ~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---- 605 (1623)
....+ +.++.+|++.+..|.+|.+.+++++.++..+..|+..++..+..+.++.++++||.++++.++......
T Consensus 385 ~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~ 464 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAP 464 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 43332 334566777778899999999999999999999999999999999999999999999998764422111
Q ss_pred ---CCC-CCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----
Q 000351 606 ---PPL-TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---- 677 (1623)
Q Consensus 606 ---~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---- 677 (1623)
... ......|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++| .+.+
T Consensus 465 ~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~ 542 (710)
T TIGR03796 465 AAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG-EILFDGIP 542 (710)
T ss_pred ccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEe
Confidence 000 1123469999999999853 46899999999999999999999999999999999999999999 5443
Q ss_pred ---------cCcEEEEccCcccCcccHHHHHhcCC-CCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 678 ---------RGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 678 ---------~~~iay~~Q~~~l~~~Tv~enI~~g~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
++.|+||||+|++|++||||||.++. +.+++++.++++.+++.++++.+|+|++|.+||+|.+|||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 45799999999999999999999875 47889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
||+||||++++|+|+|||||||+||+++++.+++.+.. .++|+|+|||+++.+..||+|++|++|+|+++|+|++++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999998754 589999999999999999999999999999999999999
Q ss_pred hcChhHHHhH
Q 000351 828 NNGELFQKLM 837 (1623)
Q Consensus 828 ~~~~~~~~~~ 837 (1623)
+.++.|++++
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 8888887764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=680.64 Aligned_cols=537 Identities=20% Similarity=0.265 Sum_probs=435.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 296 NSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRST 375 (1623)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~ 375 (1623)
.+..++.++..+++.++..++..+.|++++++++.+........-...++.+++..++..++.....+...+.+.++...
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888999999999999999999998864332111111122222333333444333334445566777778
Q ss_pred HHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000351 376 LVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMF 454 (1623)
Q Consensus 376 L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~ 454 (1623)
++..+|++.++.+....++.++|+++|++++|++.+.+.+ ..+..++...+.+++++++++..-+..+++.++.+++.+
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8889999999999998889999999999999999999865 355666777777777777777666666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 455 PVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP 534 (1623)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~ 534 (1623)
.+..++.++.++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+..++..........+.....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888889999999999999999999999999999999998888877776655554444333333332222222
Q ss_pred --HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC-CCCCC
Q 000351 535 --VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLTSG 611 (1623)
Q Consensus 535 --~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~-~~~~~ 611 (1623)
..+.++.+|.+.+..+.++++.+++++.++..+..|+..++..+..+.++.++.+||.++++.++....... ...+.
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 475 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 123345567777778999999999999999999999999999999999999999999999987654321111 11122
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------- 678 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------- 678 (1623)
...|+++|++|+|++.+++++|+|+||+|++||+++||||||||||||+++|+|+++|++| .+.+.
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG-QVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhcCHHHHH
Confidence 3469999999999854457899999999999999999999999999999999999999999 55443
Q ss_pred CcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhc
Q 000351 679 GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~ 757 (1623)
++|+||||+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++||||+++
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 36999999999999999999999964 67889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHh
Q 000351 758 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836 (1623)
Q Consensus 758 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 836 (1623)
+|+|+|||||||+||+++++.|.+ . ...+++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++++.|+++
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~-~--~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQE-S--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHH-h--hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 999999999999999999999987 2 234789999999999999999999999999999999999999888777654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=670.73 Aligned_cols=515 Identities=24% Similarity=0.293 Sum_probs=412.2
Q ss_pred HHHHHHHHHHHHhhhhchhhhhcccCc-cCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 921 LLLCYFLTETLRVSSSTWLSYWTDQSS-LKTH--GPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 997 (1623)
Q Consensus 921 ~~~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~--~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~l 997 (1623)
.+++.++..++....++.+++..|... .... ....+..+++++.++..++.+++.+.....+.+...+++.++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 8 LGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444331 1111 1123455566667777888888899999999999999999999999
Q ss_pred hcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 998 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 1077 (1623)
Q Consensus 998 l~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~ 1077 (1623)
++.|..+|++.++|++++|+++|++.++..+...+..++..+..++..+++++..+|++.++++..+++...+...+.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888878888888777777788888888876665544443333333334444
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000351 1078 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL--- 1154 (1623)
Q Consensus 1078 ~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~--- 1154 (1623)
.+...+......+...+.+.|+++|+.+||+|+.++++.+++.+..++..+..........+......++..+..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555667888999999999999999999999999988887777666555555555555444444333222
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCC
Q 000351 1155 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 1234 (1623)
Q Consensus 1155 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp 1234 (1623)
.+++.+ ..+..+ .+.+...+.++..+..++..+...+..+.....+.+|+.++.+.+++... .. +...+
T Consensus 248 ~~~~~~-~~g~~t-----~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~--~~~~~ 316 (529)
T TIGR02857 248 YIGFRL-LAGDLD-----LATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA--PVTAA 316 (529)
T ss_pred HHHHHH-HcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc--CCCCC
Confidence 222222 244454 45555566677778888888888999999999999999999875433211 11 11122
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhh
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
..+.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||.|+++++.+++|+
T Consensus 317 ~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 34679999999999765457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
+++||||||.+|++||||||.... +.+|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998754 5789999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEE
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1446 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl 1446 (1623)
|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|+||
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=640.37 Aligned_cols=463 Identities=25% Similarity=0.404 Sum_probs=354.9
Q ss_pred CcEEEEeeEEEcCCCCCC-CccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCC----CCCeEEE----------
Q 000351 613 PAISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV----SDASAVI---------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~-~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~----~g~~~~~---------- 677 (1623)
+.++++|++..|....+. ++++||||+|.+||++||||.|||||||+.++|.|.+++. +| .+..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G-~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG-EVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccce-EEEECCcchhcCCH
Confidence 368999999999754222 5999999999999999999999999999999999999876 45 4322
Q ss_pred -------cCcEEEEccCccc-Cc--ccHHHHHhc----CCCC-C---HHHHHHHHHHhCchhHHhcCCCCCcccccCCCC
Q 000351 678 -------RGTVAYVPQVSWI-FN--ATVRDNILF----GSAF-E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 739 (1623)
Q Consensus 678 -------~~~iay~~Q~~~l-~~--~Tv~enI~~----g~~~-~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~ 739 (1623)
.+.|||++|+|+= +| .||.+-|.= .... . .++..+.++..++.+.... .....
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPh 153 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPH 153 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCc
Confidence 2359999999973 54 477776642 2212 1 2333445566676654443 22335
Q ss_pred ccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000351 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 817 (1623)
Q Consensus 740 ~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 817 (1623)
.|||||||||.||+||..+|+++|+||||++||+.+..+|.+.+.... ..|.++|+||||+..+.+ ||+|+||++|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 899999999999999999999999999999999999999998665533 359999999999999865 899999999999
Q ss_pred EEecChhHHhhcCh--hHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhh
Q 000351 818 KEEGTFEDLSNNGE--LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 895 (1623)
Q Consensus 818 ~~~g~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 895 (1623)
+|.|+.+++.++.. +-+.++.... ..
T Consensus 234 VE~G~~~~i~~~p~hpYT~~Ll~a~p----------------------~~------------------------------ 261 (539)
T COG1123 234 VETGPTEEILSNPQHPYTRGLLAAVP----------------------RL------------------------------ 261 (539)
T ss_pred EEecCHHHHHhccCCcccHHHHhhCC----------------------Cc------------------------------
Confidence 99999999875421 0000000000 00
Q ss_pred hcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 000351 896 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 975 (1623)
Q Consensus 896 ~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~ 975 (1623)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 000351 976 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 1055 (1623)
Q Consensus 976 ~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1623)
...
T Consensus 262 ------------------------------~~~----------------------------------------------- 264 (539)
T COG1123 262 ------------------------------GDE----------------------------------------------- 264 (539)
T ss_pred ------------------------------ccc-----------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1056 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 1135 (1623)
Q Consensus 1056 ~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~ 1135 (1623)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000351 1136 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 1215 (1623)
Q Consensus 1136 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~ 1215 (1623)
. ...
T Consensus 265 -------------------------------~---------------------------------------------~~~ 268 (539)
T COG1123 265 -------------------------------K---------------------------------------------IIR 268 (539)
T ss_pred -------------------------------c---------------------------------------------ccc
Confidence 0 000
Q ss_pred CCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHh
Q 000351 1216 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 1286 (1623)
Q Consensus 1216 ~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~---------~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL 1286 (1623)
.+.+. +. +...-++++|++++|.. ....+++||||+|++||.+||||+||||||||.++|
T Consensus 269 ~~~~~--------~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i 337 (539)
T COG1123 269 LPRRG--------PL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARIL 337 (539)
T ss_pred ccccc--------cc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHH
Confidence 00000 00 01124889999999963 124689999999999999999999999999999999
Q ss_pred hccccCCCcEEEECCEe--cCCCChHHhhhceEEEcCCCc--cc-cccHHhhcC-CCC---CC----CHHHHHHHHHHhc
Q 000351 1287 FRIVELERGRILIDGFD--IAKFGLMDLRKILGIIPQSPV--LF-SGTVRFNLD-PFS---EH----SDADLWEALERAH 1353 (1623)
Q Consensus 1287 ~rl~~p~~G~I~IdG~d--i~~i~~~~lR~~i~~vpQdp~--Lf-~gTIr~NLd-~~~---~~----sd~~i~~aL~~~~ 1353 (1623)
+|+++|++|+|.++|.| .+.-.....|+++-+|+|||+ |- ..||+++|. |.. .. ..+.+-+.++.++
T Consensus 338 ~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~Vg 417 (539)
T COG1123 338 AGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417 (539)
T ss_pred hCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcC
Confidence 99999999999999977 333334567889999999997 33 349999985 322 11 1233566677776
Q ss_pred HHH-HHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEe
Q 000351 1354 LKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLII 1430 (1623)
Q Consensus 1354 l~~-~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~I 1430 (1623)
|.. +..+ ....||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|++..+ |.|.|+|
T Consensus 418 L~~~~l~r-----------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfI 486 (539)
T COG1123 418 LPPEFLDR-----------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486 (539)
T ss_pred CCHHHHhc-----------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 653 3333 4467999999999999999999999999999999999999999999988653 6899999
Q ss_pred ecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHHHHH
Q 000351 1431 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1431 aHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~ 1472 (1623)
||++..+.. ||||+||++|+|||.|+.++..+++...|.+..
T Consensus 487 SHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 487 SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred eCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 999999998 999999999999999999999988777666554
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-66 Score=675.66 Aligned_cols=533 Identities=23% Similarity=0.325 Sum_probs=447.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 292 LRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFR 371 (1623)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 371 (1623)
++..++.+++.+...++..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKK 217 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888899999999999999999999875433222223344444445555666666666777889999
Q ss_pred HHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000351 372 LRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 450 (1623)
Q Consensus 372 ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~ 450 (1623)
+...++..+|+|.++++... .+.++|++++++ +|++.+.+++. .+.......+.+++.+++++...++.+++.++++
T Consensus 218 ~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 295 (694)
T TIGR03375 218 ADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAI 295 (694)
T ss_pred HHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999876 677899999999 79999998764 3333444444444555556666677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 451 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFIL 530 (1623)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~ 530 (1623)
++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........+.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (694)
T TIGR03375 296 PLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFA 375 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999999999888887777776666555554
Q ss_pred HHHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--
Q 000351 531 NSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-- 606 (1623)
Q Consensus 531 ~~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~-- 606 (1623)
.....+ +.++.+|++.+..|.+|++.+++++.++..+..|+..++..+..+.++.++++|+.++++.++.......
T Consensus 376 ~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 455 (694)
T TIGR03375 376 QFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFL 455 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 443332 3345667777788899999999999999999999999999999999999999999999987653221111
Q ss_pred CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------
Q 000351 607 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------- 678 (1623)
Q Consensus 607 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------- 678 (1623)
........|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++| .+.+.
T Consensus 456 ~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~l~~~~ 533 (694)
T TIGR03375 456 HRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLLDGVDIRQID 533 (694)
T ss_pred CCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhhCC
Confidence 111123469999999999743 46899999999999999999999999999999999999999999 54443
Q ss_pred -----CcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 679 -----GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 679 -----~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
..|+||||+|++|++||+|||.++++ .+++++.++++.+++.++++.+|+|++|.+||+|.+||||||||++||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999976 789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||++++|+++|||||||+||+++++.|.+.+ ....+++|+|+||||++.+..||+|++|++|+++++|+|+|+++.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999999998865 445578999999999999999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-68 Score=684.95 Aligned_cols=483 Identities=22% Similarity=0.321 Sum_probs=350.9
Q ss_pred CCcEEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE--------------
Q 000351 612 LPAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 676 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------- 676 (1623)
++.++++|++++|+... +.++|+||||++++||+++|+|+||||||||+++|+|+++|++|....
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 35799999999996322 347999999999999999999999999999999999999998884221
Q ss_pred -----------E-cCcEEEEccCc--ccC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCccc
Q 000351 677 -----------I-RGTVAYVPQVS--WIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTE 733 (1623)
Q Consensus 677 -----------~-~~~iay~~Q~~--~l~-~~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ 733 (1623)
. +..|||++|+| .++ ..||+|||.++. ..+. ++..++++..++.+. ...
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~ 161 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTI 161 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhH
Confidence 0 12599999998 455 579999998752 1222 234445555555310 011
Q ss_pred ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEE
Q 000351 734 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIIL 811 (1623)
Q Consensus 734 ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~ 811 (1623)
......+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+.....+ |+|+|+|||+++++. .||+|++
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 23345689999999999999999999999999999999999999998855443333 899999999999875 5899999
Q ss_pred EeCCEEEEecChhHHhhcCh-hH-HHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhh
Q 000351 812 VHEGMVKEEGTFEDLSNNGE-LF-QKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVL 889 (1623)
Q Consensus 812 l~~G~i~~~g~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1623)
|++|++++.|+++++..... .| ..+... .+.
T Consensus 242 l~~G~i~~~g~~~~~~~~~~~~~~~~l~~~----------------------~~~------------------------- 274 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHAPQHPYTRALLAA----------------------VPQ------------------------- 274 (623)
T ss_pred eeCCeecccCCHHHhhcCCCChhhhhhhhc----------------------cCc-------------------------
Confidence 99999999998877642110 00 000000 000
Q ss_pred hhHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHH
Q 000351 890 IKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVL 969 (1623)
Q Consensus 890 ~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~ 969 (1623)
. ..+....
T Consensus 275 ----------------------~---------------------------~~~~~~~----------------------- 282 (623)
T PRK10261 275 ----------------------L---------------------------GAMKGLD----------------------- 282 (623)
T ss_pred ----------------------c---------------------------ccccccc-----------------------
Confidence 0 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHH
Q 000351 970 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLI 1049 (1623)
Q Consensus 970 ~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~ 1049 (1623)
.| +. + ...
T Consensus 283 ------------------------------~~---------~~----~----~~~------------------------- 290 (623)
T PRK10261 283 ------------------------------YP---------RR----F----PLI------------------------- 290 (623)
T ss_pred ------------------------------CC---------cc----c----ccc-------------------------
Confidence 00 00 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000351 1050 GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRY 1129 (1623)
Q Consensus 1050 ~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~ 1129 (1623)
...
T Consensus 291 -----------------------------------~~~------------------------------------------ 293 (623)
T PRK10261 291 -----------------------------------SLE------------------------------------------ 293 (623)
T ss_pred -----------------------------------ccc------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1130 TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVER 1209 (1623)
Q Consensus 1130 ~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveR 1209 (1623)
.....
T Consensus 294 ---------------------------------~~~~~------------------------------------------ 298 (623)
T PRK10261 294 ---------------------------------HPAKQ------------------------------------------ 298 (623)
T ss_pred ---------------------------------ccccc------------------------------------------
Confidence 00000
Q ss_pred HHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCC---------CCCcccceeeEeCCCCEEEEecCCCCChh
Q 000351 1210 VGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKS 1280 (1623)
Q Consensus 1210 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrsGSGKS 1280 (1623)
. +.+.+. ..+ +....|+++|++++|+.. ..++|+||||+|++||++||+|+||||||
T Consensus 299 -----~-~~~~~~-----~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKS 364 (623)
T PRK10261 299 -----E-PPIEQD-----TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKS 364 (623)
T ss_pred -----C-cccccc-----ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHH
Confidence 0 000000 000 011248999999999521 13699999999999999999999999999
Q ss_pred hHHHHhhccccCCCcEEEECCEecCCCChH---HhhhceEEEcCCC--ccccc-cHHhhcCC-C---CCCCH----HHHH
Q 000351 1281 SMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKILGIIPQSP--VLFSG-TVRFNLDP-F---SEHSD----ADLW 1346 (1623)
Q Consensus 1281 TLl~lL~rl~~p~~G~I~IdG~di~~i~~~---~lR~~i~~vpQdp--~Lf~g-TIr~NLd~-~---~~~sd----~~i~ 1346 (1623)
||+++|.|+++|++|+|.++|.++...+.. .+|++|+||||+| .++.. ||++|+.. . +.... +++.
T Consensus 365 TLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 444 (623)
T PRK10261 365 TTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVA 444 (623)
T ss_pred HHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999877643 3577899999998 36654 99999852 1 11111 2344
Q ss_pred HHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--C
Q 000351 1347 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--S 1424 (1623)
Q Consensus 1347 ~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~ 1424 (1623)
+.|+.+++.+ .........||||||||++|||||+.+|+||||||||++||+.+.+.|.+.|++..+ +
T Consensus 445 ~~L~~~gL~~----------~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g 514 (623)
T PRK10261 445 WLLERVGLLP----------EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 (623)
T ss_pred HHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4555554421 223334467999999999999999999999999999999999999999999988643 7
Q ss_pred cEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHH
Q 000351 1425 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1425 ~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~ 1469 (1623)
.|||+|||+++.+.. ||||++|++|+|++.|+++++..++...|.
T Consensus 515 ~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~ 560 (623)
T PRK10261 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560 (623)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHH
Confidence 899999999999987 999999999999999999999876544443
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=673.92 Aligned_cols=539 Identities=21% Similarity=0.305 Sum_probs=445.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 294 ALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1623)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir 373 (1623)
..++.+++.++..++..++..++.++.|++++.++|.+........-+.++++++++.++..++.....+...+.+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888999999999999999999987543322222333344444555556666666667778889999
Q ss_pred HHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000351 374 STLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVF 452 (1623)
Q Consensus 374 ~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~ 452 (1623)
..++..+|+|.++++....++.++|+++++++ |++.+.+++. .+.......+.+++.+++++...++.+++.++++++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l 307 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPV 307 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999989999999999998 9999998653 333334444444455555555556667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 453 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNS 532 (1623)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~ 532 (1623)
.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+..........+...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (708)
T TIGR01193 308 YAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAV 387 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888889999999999999999999999999999999999999999998887777666655555444444333333
Q ss_pred HHH--HHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC--CCC
Q 000351 533 IPV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--PPL 608 (1623)
Q Consensus 533 ~~~--~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--~~~ 608 (1623)
... .+.++.+|++.+..|.+|++.++++..++..+..|+..+...+..+.++.++++||.++++.++...... ...
T Consensus 388 ~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~ 467 (708)
T TIGR01193 388 TKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTEL 467 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCC
Confidence 222 2345567788888899999999999999999999999999999999999999999999998664422111 111
Q ss_pred CCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc----------
Q 000351 609 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---------- 678 (1623)
Q Consensus 609 ~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~---------- 678 (1623)
......|+++|++|+|++ ++++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++| .+.++
T Consensus 468 ~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 468 NNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG-EILLNGFSLKDIDRH 544 (708)
T ss_pred CCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-EEEECCEEHHHcCHH
Confidence 122346999999999973 46899999999999999999999999999999999999999999 55443
Q ss_pred ---CcEEEEccCcccCcccHHHHHhcCC--CCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 679 ---GTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 679 ---~~iay~~Q~~~l~~~Tv~enI~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
+.||||||+|++|++||+|||.++. ..+++++.++++.+++.++++.+|+|++|.+||+|.+|||||||||+|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 4699999999999999999999983 46789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhH
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 833 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 833 (1623)
|++++|+|+|||||||+||+++++.+.+.+.. .+|+|+|+|||+++.+..||+|++|++|+++++|+|+++++..+.|
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcH
Confidence 99999999999999999999999999987764 3689999999999999999999999999999999999999888888
Q ss_pred HHhHH
Q 000351 834 QKLME 838 (1623)
Q Consensus 834 ~~~~~ 838 (1623)
+++++
T Consensus 703 ~~l~~ 707 (708)
T TIGR01193 703 ASLIH 707 (708)
T ss_pred HHHhh
Confidence 87653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-65 Score=657.76 Aligned_cols=544 Identities=21% Similarity=0.240 Sum_probs=445.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 293 RALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRL 372 (1623)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i 372 (1623)
+..++.+++.++..++..++..++..+.|++++.+++.+...........++..+++..++..++.....+...+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777788888888999999999987764322211112222233344444555555555667788889
Q ss_pred HHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000351 373 RSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLV 451 (1623)
Q Consensus 373 r~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~ 451 (1623)
...++..+|+|.++++.....+.+.|++++++++|++.+.+.+ ..+..++..++.+++.+++++...++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999854 455666777777777777777666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 452 FMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILN 531 (1623)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~ 531 (1623)
+.+.+..++.+++++..++.++..++..+...|.++|+++||.++.|+.+.+++++..++-.+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667778888888889999999999999999999999999999999999999888777766666665555554444444
Q ss_pred HHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCC
Q 000351 532 SIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT 609 (1623)
Q Consensus 532 ~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 609 (1623)
.+..+ +.++.++.+.+..|.++++.+.++++++..+..|+..+...+..+.++..+++|+.++++.++..........
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 336 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIE 336 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCC
Confidence 33322 3334556666677899999999999999999999999999999999999999999999986543221111111
Q ss_pred CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------
Q 000351 610 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 677 (1623)
Q Consensus 610 ~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------ 677 (1623)
+....|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++| .+.+
T Consensus 337 ~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 337 RAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG-EILLDGHDLRDYTLAS 414 (582)
T ss_pred CCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCc-eEEECCEEhhhcCHHH
Confidence 222359999999999753 46899999999999999999999999999999999999999998 4443
Q ss_pred -cCcEEEEccCcccCcccHHHHHhcCC--CCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 678 -RGTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 678 -~~~iay~~Q~~~l~~~Tv~enI~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
++.|+||||+|.+|++||+|||.+|. ++++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++||||
T Consensus 415 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 415 LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_pred HHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 34699999999999999999999985 378999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHH
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 834 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1623)
++++|+|+||||||||||+++++.+++.+.. ..+++|+|+|||+++.++.||+|++|++|+++++|+++++++.++.|+
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~ 573 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYA 573 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHH
Confidence 9999999999999999999999999986644 456899999999999999999999999999999999999999988898
Q ss_pred HhHHh
Q 000351 835 KLMEN 839 (1623)
Q Consensus 835 ~~~~~ 839 (1623)
++...
T Consensus 574 ~l~~~ 578 (582)
T PRK11176 574 QLHKM 578 (582)
T ss_pred HHHHH
Confidence 88753
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=653.26 Aligned_cols=543 Identities=23% Similarity=0.288 Sum_probs=454.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 293 RALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRL 372 (1623)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i 372 (1623)
+.+++.+++.++.++++.++..++...+|++++.+++..........-+.+++++++..++..++.....+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999986654332222222233334444455555555556677888899
Q ss_pred HHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000351 373 RSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLV 451 (1623)
Q Consensus 373 r~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~ 451 (1623)
...++..+|+|.++.+....++.+.|++++++++|++.+.+.+. .+..++...+.+++++++++..-++.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999998664 55666767777777777777776777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 452 FMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILN 531 (1623)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~ 531 (1623)
+.+.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+..........+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888899999999999999999999999999999999999999999999988888777766666555555444444
Q ss_pred HHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCC
Q 000351 532 SIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT 609 (1623)
Q Consensus 532 ~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 609 (1623)
....+ +.++.+|.+.+..+.+|++.+++++.++..+..|+..+...+..+.+++++++||.++++.++..........
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIE 325 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 33322 3345566677778999999999999999999999999999999999999999999999986554321111111
Q ss_pred CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------
Q 000351 610 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR----------- 678 (1623)
Q Consensus 610 ~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~----------- 678 (1623)
+....|+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++| .+.+.
T Consensus 326 ~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G-~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 326 RARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG-QILLDGHDLADYTLAS 403 (571)
T ss_pred CCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEeHHhcCHHH
Confidence 223469999999999753 46899999999999999999999999999999999999999999 55443
Q ss_pred --CcEEEEccCcccCcccHHHHHhcCC--CCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 679 --GTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 679 --~~iay~~Q~~~l~~~Tv~enI~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
+.|+||||+|++|++||||||.++. +.++++++++++.|++.++++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 404 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 3599999999999999999999985 488999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHH
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 834 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1623)
++++|+|+|||||||+||+++++.|.+.+.. ..+++|+|+|||+.+.++.||+|++|++|++++.|+++++.+..+.|+
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~ 562 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYA 562 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHH
Confidence 9999999999999999999999999886654 457899999999999999999999999999999999999998877777
Q ss_pred HhHH
Q 000351 835 KLME 838 (1623)
Q Consensus 835 ~~~~ 838 (1623)
++..
T Consensus 563 ~~~~ 566 (571)
T TIGR02203 563 QLHN 566 (571)
T ss_pred HHHH
Confidence 7654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=606.14 Aligned_cols=527 Identities=22% Similarity=0.322 Sum_probs=432.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 305 WGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKS 384 (1623)
Q Consensus 305 ~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i~~K~ 384 (1623)
...++.++..++...|-.++..+++.+-..+....-+.++++++++.++++++.-.-.+..++.+.++|..++..+++|.
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677778888888888888887766554223345566677778888888888888999999999999999999999
Q ss_pred hcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000351 385 LRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLW---SAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFI 460 (1623)
Q Consensus 385 l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~---~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~~~~~~ 460 (1623)
.++++...++.++|++.++++.-+|.++.++. ++.... ..|+.+.++++. ....++++-++.++++...+..+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~---~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFF---FNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764 333333 334334333333 33345666666666666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 000351 461 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI---PVLV 537 (1623)
Q Consensus 461 ~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~---~~~~ 537 (1623)
++..++..+++++....-.+..-+.|+|+.++|.|+..+...++|.+..++-.+...+..+....++++..+. .+.+
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999988888886655544444333333333333333332 2333
Q ss_pred HHHHHHHHHHhC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC-CCCCCCc-
Q 000351 538 TVVSFGMFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP-LTSGLPA- 614 (1623)
Q Consensus 538 ~~~~f~~~~~~~-~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~-~~~~~~~- 614 (1623)
.++.++ +.+.+ |+++....+.++.+...+..|++.+...++.-.++.++.+.+..|++.|......... .....+.
T Consensus 241 vAv~~g-~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 241 VAVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHH-HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 333333 34456 6999999999999999999999999999999999999999999999987653222211 1122233
Q ss_pred -EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 615 -ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 615 -i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
++.+|++|.|++ ++++++|+||++++|++++|||+||||||||+++|+|+++|++| .+.++ ++
T Consensus 320 ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G-~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 320 EISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG-EIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred eeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCccccccCHHHHHhH
Confidence 445599999985 35899999999999999999999999999999999999999999 55443 46
Q ss_pred EEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCC
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~ 759 (1623)
++||||+|.||++||||||.++++ .+++++.++++.+++.+.++. |+|.+|.+||+|.+|||||+|||+||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987 678999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHh
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 839 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 839 (1623)
+++||||||+|||+++++.|.+.+. ...++||||+||||++.+..+|+|++|++|+++++|+|+++.++++.|++++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~-~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQ-ELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHH-HHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 9999999999999999999987654 456789999999999999999999999999999999999999999999999865
Q ss_pred h
Q 000351 840 A 840 (1623)
Q Consensus 840 ~ 840 (1623)
+
T Consensus 555 q 555 (559)
T COG4988 555 Q 555 (559)
T ss_pred H
Confidence 4
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=598.76 Aligned_cols=488 Identities=25% Similarity=0.388 Sum_probs=399.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHH-HHHHH
Q 000351 976 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLI-GIVST 1054 (1623)
Q Consensus 976 ~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1054 (1623)
.++...+..+-+.+-.+.+.|+.+..+.|.-+..+|-+..-...-..-|+..+...+.+.+..++-+....++. ....|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34556667777788888899999999999988777765544444444455445555555555555444333333 33456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1055 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 1134 (1623)
Q Consensus 1055 ~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~ 1134 (1623)
|++.+.+..+++|.++........-..||....+.+...+.-.+++-+..|++-|+.|+.+..++.+.++.+++......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 66666655555554443333333334566666677777888899999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1135 GANRWLAIRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGN 1212 (1623)
Q Consensus 1135 ~~~~wl~~~l~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~ 1212 (1623)
..-.|+.+....+............. +..+..+ .+.+-..-.+..+++.+++.+-..+.++.+.....|+..+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~T-----vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfd 238 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLT-----VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCC-----chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHH
Confidence 77778877665544333222222211 2233333 5566666778888999999999999999999999999998
Q ss_pred hhcCCCCCCccccCCCCCCCCC-CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc
Q 000351 1213 YIELPSEAPLVIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1213 ~~~~~~e~~~~~~~~~~~~~wp-~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
..+.+.|. .+.+..++-|| ..|.|.|+||+|.|.+.. ++|+|+||++++|+++||||++|+||||+.++|+|+|+
T Consensus 239 Ll~~~~~v---~d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD 314 (497)
T COG5265 239 LLDVEAEV---SDAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred hhccchhh---ccCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 88766553 23334456675 457899999999998774 79999999999999999999999999999999999999
Q ss_pred CCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhh
Q 000351 1292 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1370 (1623)
Q Consensus 1292 p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~ 1370 (1623)
+++|.|.|||.||..+..+.+|+.||+||||.+||+.|+..|+...+ ..+++|++.|++.++++++|+.+|+||||.||
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 99999999999999999999999999999999999999999998554 67999999999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCce
Q 000351 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 1450 (1623)
Q Consensus 1371 e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1450 (1623)
|+|-.||||||||+++||++|++|+||+||||||+||..||+.||.+|++.++++|.++|||||+||.++|.|+||++|+
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhHHhhcCCChHHHHHH
Q 000351 1451 VLEYDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1451 ive~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
|+|.|+|+||+++ +|.|++||.
T Consensus 475 i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 475 IVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEecCcHHHHHHc-CChHHHHhc
Confidence 9999999999987 789999984
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=706.04 Aligned_cols=568 Identities=19% Similarity=0.237 Sum_probs=438.3
Q ss_pred ccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 898 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 977 (1623)
Q Consensus 898 g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~ 977 (1623)
..+++....+|..... +..+++.+++.++..++....++.+....+.... ......+...+++++++..++.+++.++
T Consensus 43 ~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 120 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASH-RKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNL-GENVNDIIFSLVLIGIFQFILSFISSFC 120 (1466)
T ss_pred ccccHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544455543322 2233334444444444444444444444443211 1223345566677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 000351 978 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 1057 (1623)
Q Consensus 978 ~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1623)
+...+.+...+++.+++++++++|+.|||.++.|++++|++.|++.+...+...+..++..++.+++.++++++.+|.+.
T Consensus 121 ~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~La 200 (1466)
T PTZ00265 121 MDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLT 200 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1058 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 1137 (1623)
Q Consensus 1058 ~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 1137 (1623)
++++.++++++.+..++.+..+...+......+...+...|+++|+++||+|+.++++.+++.+..+...+..+......
T Consensus 201 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~ 280 (1466)
T PTZ00265 201 LCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFME 280 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666665565566666666788899999999999999999999999999888777776655544433
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhc-------CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1138 RWLAIRLEIVGGL---MIWLTATFAVVQN-------GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAV 1207 (1623)
Q Consensus 1138 ~wl~~~l~~~~~~---~~~~~~~~~v~~~-------~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~av 1207 (1623)
.+......++..+ +++..+...+... +..+ .+.+..++.+.+.....+..+...+..+.....|.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t-----~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~ 355 (1466)
T PTZ00265 281 SLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFH-----GGSVISILLGVLISMFMLTIILPNITEYMKSLEAT 355 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222211 1122222222221 1122 11111111111221223344555677788889999
Q ss_pred HHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCC-CCcccceeeEeCCCCEEEEecCCCCChhhHHHHh
Q 000351 1208 ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 1286 (1623)
Q Consensus 1208 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL 1286 (1623)
+|+.+.++.+++.+.. +. ....|..+.|+|+||+|+|+... .++|+|+||+|++||++|||||||||||||+++|
T Consensus 356 ~ri~~ii~~~~~~~~~-~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 356 NSLYEIINRKPLVENN-DD---GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHcCCCCCCCC-CC---CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999865543211 11 11122335799999999997432 3699999999999999999999999999999999
Q ss_pred hccccCCCcEEEE-CCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC---------------------------
Q 000351 1287 FRIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--------------------------- 1338 (1623)
Q Consensus 1287 ~rl~~p~~G~I~I-dG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~--------------------------- 1338 (1623)
.|+|+|++|+|++ ||.|+++++.+++|++|++|||+|.||++||++||....
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 579999999999999999999999999999999997521
Q ss_pred -------------------------------CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1339 -------------------------------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1339 -------------------------------~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+.+|+++++|++.+++++++.++|.|+||.++++|.+||||||||++||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 2467899999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhccCEEEEEeCc----------------
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSG---------------- 1449 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G---------------- 1449 (1623)
|||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999875 479999999999999999999999986
Q ss_pred -------------------------------eEeeecChhHHhhcCCChHHHHHHHhh
Q 000351 1450 -------------------------------RVLEYDTPEELLSNEGSSFSKMVQSTG 1476 (1623)
Q Consensus 1450 -------------------------------~ive~Gtp~eLl~~~~~~f~~l~~~~~ 1476 (1623)
+|+|+|+|+||+++.+|.|+.|++.+.
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999877899999997643
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-65 Score=693.22 Aligned_cols=219 Identities=20% Similarity=0.311 Sum_probs=187.6
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhc
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1315 (1623)
...|+++|++++|+....++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+ +....|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533479999999999999999999999999999999999999999999999999975 45678889
Q ss_pred eEEEcCCCccccc-cHHhhcCCCC---CCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~~---~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
||||||++.++.. |++|||..+. ..++++ +.++++..++.++ .......||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~-----------~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY-----------ADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHH
Confidence 9999999998865 9999996432 122222 3344555555443 3334467999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCC
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~ 1465 (1623)
|||+.+|+||+|||||++||+.+.+.+++.|++.. +|+|||++||+++.++. ||||++|++|++++.|++++|.++.+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999999999999864 57999999999999987 99999999999999999999987654
Q ss_pred C
Q 000351 1466 S 1466 (1623)
Q Consensus 1466 ~ 1466 (1623)
.
T Consensus 2163 ~ 2163 (2272)
T TIGR01257 2163 D 2163 (2272)
T ss_pred C
Confidence 3
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-65 Score=649.84 Aligned_cols=524 Identities=18% Similarity=0.210 Sum_probs=406.8
Q ss_pred HHHHHHHHHHHHhhhhchhhhhcccCccCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000351 921 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 998 (1623)
Q Consensus 921 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~-~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll 998 (1623)
.+++.++..++....++.+..-.|....... . ...+..+++++.++..++.+++.++....+.+....++.+++++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555554443221111 1 1224445555566677778888888899999999999999999999
Q ss_pred cCCccccccCCchhHHHHHhcccchhhhhhHH-HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 999 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 1077 (1623)
Q Consensus 999 ~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~ 1077 (1623)
+.|+.. .|...+++++|++.+...+.. .+..++..++.++ .+++++..+|++.++++..+++++.+..+..+.
T Consensus 91 ~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~ 164 (544)
T TIGR01842 91 SATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRA 164 (544)
T ss_pred cCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999842 366789999999999887665 3444444444433 335566777776655443333333344444444
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 000351 1078 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIWL 1154 (1623)
Q Consensus 1078 ~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~ 1154 (1623)
.++..+...+..+...+++.|+++|+++||+|+.++.+.+++.+..++..+..+..............++..+ +++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (544)
T TIGR01842 165 TKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLG 244 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556677788899999999999999999999999888887776665554444333333333232222 2222
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCC
Q 000351 1155 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 1234 (1623)
Q Consensus 1155 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp 1234 (1623)
++.+ ....+..+ .+.+..++.+...+..++..+...+..+.....+.+|+.++.+.+++.+. ....+ +
T Consensus 245 ~g~~-l~~~g~it-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~ 312 (544)
T TIGR01842 245 LGAY-LAIDGEIT-----PGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---E 312 (544)
T ss_pred HHHH-HHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---C
Confidence 2222 23355555 66666667777788889999999999999999999999999986654321 11111 2
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhh
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
..+.|+++||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|+
T Consensus 313 ~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 34679999999999755457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
+++||||||.+|++|+|+|+..++ +.+|++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998655 4789999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhh
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999875 6799999999999998999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=667.24 Aligned_cols=450 Identities=24% Similarity=0.395 Sum_probs=341.8
Q ss_pred CcEEEEeeEEEcCCC-CCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccC-----CCCCeEEE---------
Q 000351 613 PAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVI--------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~~--------- 677 (1623)
+.++++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|.++| ++|. +.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGD-IRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceE-EEECCEecccCC
Confidence 368999999999631 135799999999999999999999999999999999999986 5773 221
Q ss_pred --------cCcEEEEccCcc--cC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCC
Q 000351 678 --------RGTVAYVPQVSW--IF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 738 (1623)
Q Consensus 678 --------~~~iay~~Q~~~--l~-~~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 738 (1623)
+..|||++|+|. ++ ..|+++|+.++. ..+. ++..++++.+++.+... ......
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~ 154 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYP 154 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCC
Confidence 135999999985 33 469999986421 1221 33455566666643110 112334
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCE
Q 000351 739 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGM 816 (1623)
Q Consensus 739 ~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~ 816 (1623)
.+|||||||||+|||||+.+|+++|||||||+||+.+.+++.+.+.+... .|+|+|+|||+++++. .||+|++|++|+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCE
Confidence 68999999999999999999999999999999999999999986555333 3899999999999876 589999999999
Q ss_pred EEEecChhHHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhh
Q 000351 817 VKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE 896 (1623)
Q Consensus 817 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 896 (1623)
+++.|+++++..... .
T Consensus 235 i~~~g~~~~~~~~~~--------------------------------------~-------------------------- 250 (529)
T PRK15134 235 CVEQNRAATLFSAPT--------------------------------------H-------------------------- 250 (529)
T ss_pred EEEeCCHHHHhhCCC--------------------------------------C--------------------------
Confidence 998887665431000 0
Q ss_pred cccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000351 897 TGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSY 976 (1623)
Q Consensus 897 ~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~ 976 (1623)
.+.+.
T Consensus 251 ----------~~~~~----------------------------------------------------------------- 255 (529)
T PRK15134 251 ----------PYTQK----------------------------------------------------------------- 255 (529)
T ss_pred ----------HHHHH-----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 000351 977 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 1056 (1623)
Q Consensus 977 ~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1623)
T Consensus 256 -------------------------------------------------------------------------------- 255 (529)
T PRK15134 256 -------------------------------------------------------------------------------- 255 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1057 LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 1136 (1623)
Q Consensus 1057 ~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~ 1136 (1623)
++ ..
T Consensus 256 ----------------~~----------~~-------------------------------------------------- 259 (529)
T PRK15134 256 ----------------LL----------NS-------------------------------------------------- 259 (529)
T ss_pred ----------------HH----------Hh--------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000351 1137 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 1216 (1623)
Q Consensus 1137 ~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~ 1216 (1623)
. . +. .
T Consensus 260 ------------------------------~-----~-----------------------------------~~----~- 264 (529)
T PRK15134 260 ------------------------------E-----P-----------------------------------SG----D- 264 (529)
T ss_pred ------------------------------C-----c-----------------------------------cc----c-
Confidence 0 0 00 0
Q ss_pred CCCCCccccCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhh
Q 000351 1217 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 1287 (1623)
Q Consensus 1217 ~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~---------~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~ 1287 (1623)
+ ..+ ++. ....|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|.
T Consensus 265 ~-~~~-------~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~ 333 (529)
T PRK15134 265 P-VPL-------PEP---ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL 333 (529)
T ss_pred c-ccc-------CCC---CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 000 000 0114899999999952 1246999999999999999999999999999999999
Q ss_pred ccccCCCcEEEECCEecCCCChHH---hhhceEEEcCCC--cccc-ccHHhhcCCC----C-CCC----HHHHHHHHHHh
Q 000351 1288 RIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPF----S-EHS----DADLWEALERA 1352 (1623)
Q Consensus 1288 rl~~p~~G~I~IdG~di~~i~~~~---lR~~i~~vpQdp--~Lf~-gTIr~NLd~~----~-~~s----d~~i~~aL~~~ 1352 (1623)
|++ |++|+|.++|.++...+... +|++++||||+| .+|. .|+++|+... . ..+ ++++.++++..
T Consensus 334 Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (529)
T PRK15134 334 RLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV 412 (529)
T ss_pred CcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHc
Confidence 998 58999999999998776543 477899999998 3665 4999999631 1 011 12233444443
Q ss_pred cHHHHHHhccCCcc-hhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Q 000351 1353 HLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLI 1429 (1623)
Q Consensus 1353 ~l~~~i~~lp~gLd-t~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~ 1429 (1623)
|++ ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+
T Consensus 413 -----------~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 481 (529)
T PRK15134 413 -----------GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLF 481 (529)
T ss_pred -----------CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 443 23344556899999999999999999999999999999999999999999999864 2789999
Q ss_pred eecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1430 IAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1430 IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
|||+++.+.. ||||++|++|++++.|++++++..+
T Consensus 482 vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 482 ISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred EeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 9999999976 9999999999999999999998654
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=645.30 Aligned_cols=540 Identities=19% Similarity=0.233 Sum_probs=429.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 294 ALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPA-WIG-YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFR 371 (1623)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 371 (1623)
...+.+++.++..+++.++..++..+.|+++..+++.+...... ... ..+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888999999999999999999977542221 111 1122223333444455555555667788888
Q ss_pred HHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000351 372 LRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQA-LHTLWSAPFRIIISLVLLYNELGVASLLGALLL 450 (1623)
Q Consensus 372 ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~-~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~ 450 (1623)
+...++..+|+|.++.+.....+.+.|++++++++|++.+.+.+.. +..+....+.+++++++++...++.+++.++++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~ 175 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIF 175 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988999999999999999999986643 344445544444454445444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000351 451 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACN-SFI 529 (1623)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~-~~~ 529 (1623)
++.+.+..+..++..+..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+........ ..+
T Consensus 176 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (592)
T PRK10790 176 PAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666667777777778888888999999999999999999999999999887776555433333322221 111
Q ss_pred HHH---HHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q 000351 530 LNS---IPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP 606 (1623)
Q Consensus 530 ~~~---~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 606 (1623)
... ...++.++.++ + ...+.++.+.+++++.++..+..|+..++..+..+.++..+++||.++++.++.......
T Consensus 256 ~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 333 (592)
T PRK10790 256 LSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDD 333 (592)
T ss_pred HHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCc
Confidence 111 11111112222 3 357889999999999999999999999999999999999999999999976543211111
Q ss_pred CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------
Q 000351 607 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------- 678 (1623)
Q Consensus 607 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------- 678 (1623)
.......|+++|++|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++| .+.+.
T Consensus 334 -~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~ 409 (592)
T PRK10790 334 -RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG-EIRLDGRPLSSLS 409 (592)
T ss_pred -cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEECCEEhhhCC
Confidence 1112346999999999974 36799999999999999999999999999999999999999998 44433
Q ss_pred -----CcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 679 -----GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 679 -----~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
+.|+||||+|++|++||+|||.++++.+++++.++++.+++.++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 410 ~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 410 HSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred HHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 469999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhH
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 833 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 833 (1623)
|++++|+|+|||||||+||+++++.|.+.+. ...+++|+|+|||+++.++.||+|++|++|++++.|+|+|+++.++.|
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~-~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y 568 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRY 568 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHH
Confidence 9999999999999999999999999987664 445689999999999999999999999999999999999999999999
Q ss_pred HHhHHhh
Q 000351 834 QKLMENA 840 (1623)
Q Consensus 834 ~~~~~~~ 840 (1623)
+++.+.+
T Consensus 569 ~~l~~~~ 575 (592)
T PRK10790 569 WQMYQLQ 575 (592)
T ss_pred HHHHHHH
Confidence 9887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-67 Score=664.54 Aligned_cols=439 Identities=26% Similarity=0.427 Sum_probs=336.0
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCc--cCCCCCeEEE---------------
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSDASAVI--------------- 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~--~~~~g~~~~~--------------- 677 (1623)
|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+. +|++|....-
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 47899999995 357999999999999999999999999999999999997 6888843211
Q ss_pred ------------------------------cCcEEEEccC-cccC-cccHHHHHhcCC---CCCH----HHHHHHHHHhC
Q 000351 678 ------------------------------RGTVAYVPQV-SWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTS 718 (1623)
Q Consensus 678 ------------------------------~~~iay~~Q~-~~l~-~~Tv~enI~~g~---~~~~----~~~~~~~~~~~ 718 (1623)
+..++|++|+ +.++ ..|++||+.++. .++. ++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1248999997 5665 469999998742 1221 34455666777
Q ss_pred chhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEc
Q 000351 719 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 797 (1623)
Q Consensus 719 l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvt 797 (1623)
+.+..+. ...+|||||||||+|||||+.+|+++||||||++||+.+.+++.+.+..... .|+|||+||
T Consensus 158 l~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6544433 3358999999999999999999999999999999999999999886655433 489999999
Q ss_pred CCcchhh-hcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCccc
Q 000351 798 NQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 876 (1623)
Q Consensus 798 H~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1623)
|+++++. .||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 9999986 5899999999998876654332100
Q ss_pred ccccccccchhhhhhHhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHH
Q 000351 877 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 956 (1623)
Q Consensus 877 ~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~ 956 (1623)
|..
T Consensus 260 -------------------------------~~~---------------------------------------------- 262 (520)
T TIGR03269 260 -------------------------------FME---------------------------------------------- 262 (520)
T ss_pred -------------------------------HHh----------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHH
Q 000351 957 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 1036 (1623)
Q Consensus 957 ~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~ 1036 (1623)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHH
Q 000351 1037 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 1116 (1623)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~ 1116 (1623)
..
T Consensus 263 -------------------------------------------~~----------------------------------- 264 (520)
T TIGR03269 263 -------------------------------------------GV----------------------------------- 264 (520)
T ss_pred -------------------------------------------hc-----------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1117 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 1196 (1623)
Q Consensus 1117 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~ 1196 (1623)
.
T Consensus 265 --------------------------------------------------------~----------------------- 265 (520)
T TIGR03269 265 --------------------------------------------------------S----------------------- 265 (520)
T ss_pred --------------------------------------------------------h-----------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCC---CCCCcccceeeEeCCCCEEEEec
Q 000351 1197 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVG 1273 (1623)
Q Consensus 1197 ~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~---~~~~vL~~isl~I~~GekvgIvG 1273 (1623)
++.. +... +. ....|+++|++++|+. +..++|+|+||+|++||++||+|
T Consensus 266 ------------~~~~----~~~~--------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G 317 (520)
T TIGR03269 266 ------------EVEK----ECEV--------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVG 317 (520)
T ss_pred ------------hhcc----cccc--------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEEC
Confidence 0000 0000 00 0124999999999952 22369999999999999999999
Q ss_pred CCCCChhhHHHHhhccccCCCcEEEEC-CE---ecCCCC---hHHhhhceEEEcCCCccccc-cHHhhcCCC-C-CCC--
Q 000351 1274 RTGAGKSSMLNTLFRIVELERGRILID-GF---DIAKFG---LMDLRKILGIIPQSPVLFSG-TVRFNLDPF-S-EHS-- 1341 (1623)
Q Consensus 1274 rsGSGKSTLl~lL~rl~~p~~G~I~Id-G~---di~~i~---~~~lR~~i~~vpQdp~Lf~g-TIr~NLd~~-~-~~s-- 1341 (1623)
|||||||||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||++.+|.. |+++|+... . ...
T Consensus 318 ~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 397 (520)
T TIGR03269 318 TSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 (520)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999996 64 344332 23467789999999988875 999999631 1 111
Q ss_pred --HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 000351 1342 --DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 1419 (1623)
Q Consensus 1342 --d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~ 1419 (1623)
++++.++++..++.+. ..+.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+
T Consensus 398 ~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 398 LARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471 (520)
T ss_pred HHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1223344444433210 00012344456799999999999999999999999999999999999999999998
Q ss_pred HHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1420 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1420 ~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
+.. .+.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 472 ~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 472 KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 864 27899999999999977 99999999999999999998764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=659.93 Aligned_cols=444 Identities=21% Similarity=0.327 Sum_probs=337.1
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccC--CCCCeEEE-------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVI------------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~~------------- 677 (1623)
+.++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|.++| ++| .+.+
T Consensus 4 ~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~ 79 (506)
T PRK13549 4 YLLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG-EIIFEGEELQASNIRDT 79 (506)
T ss_pred ceEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHH
Confidence 3699999999996 35799999999999999999999999999999999999986 678 4332
Q ss_pred -cCcEEEEccCcccC-cccHHHHHhcCCC------CCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHH
Q 000351 678 -RGTVAYVPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 678 -~~~iay~~Q~~~l~-~~Tv~enI~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
+..++|++|++.++ +.|++||+.++.. .+.+ +..++++..++.+. ......+|||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq 148 (506)
T PRK13549 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQ 148 (506)
T ss_pred HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 23599999999886 5699999988632 1221 22333444433221 233446899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 746 kqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
||||+|||||+.+|+++|||||||+||+.....+++.+.....+|+|+|++||+++++. .||+|++|++|+++..|+.+
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAA 228 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccc
Confidence 99999999999999999999999999999999999866554446899999999999986 48999999999998776533
Q ss_pred HHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHH
Q 000351 825 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 904 (1623)
Q Consensus 825 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 904 (1623)
++... + .
T Consensus 229 ~~~~~---------------------------------------------------------------~----------~ 235 (506)
T PRK13549 229 GMTED---------------------------------------------------------------D----------I 235 (506)
T ss_pred cCCHH---------------------------------------------------------------H----------H
Confidence 21000 0 0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 905 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 984 (1623)
Q Consensus 905 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~ 984 (1623)
...+.
T Consensus 236 ~~~~~--------------------------------------------------------------------------- 240 (506)
T PRK13549 236 ITMMV--------------------------------------------------------------------------- 240 (506)
T ss_pred HHHhh---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q 000351 985 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 1064 (1623)
Q Consensus 985 ~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1064 (1623)
|
T Consensus 241 --------------------------~----------------------------------------------------- 241 (506)
T PRK13549 241 --------------------------G----------------------------------------------------- 241 (506)
T ss_pred --------------------------C-----------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1065 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 1144 (1623)
Q Consensus 1065 ~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1144 (1623)
+
T Consensus 242 ------------------------~------------------------------------------------------- 242 (506)
T PRK13549 242 ------------------------R------------------------------------------------------- 242 (506)
T ss_pred ------------------------c-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 000351 1145 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVI 1224 (1623)
Q Consensus 1145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~ 1224 (1623)
... + ..|...
T Consensus 243 --------------------~~~-----------------------------------------~-----~~~~~~---- 252 (506)
T PRK13549 243 --------------------ELT-----------------------------------------A-----LYPREP---- 252 (506)
T ss_pred --------------------Ccc-----------------------------------------c-----cccccc----
Confidence 000 0 000000
Q ss_pred cCCCCCCCCCCCccEEEEEEEEEeCC-CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-CCCcEEEECCE
Q 000351 1225 ESNRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGF 1302 (1623)
Q Consensus 1225 ~~~~~~~~wp~~g~I~~~nVs~~Y~~-~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-p~~G~I~IdG~ 1302 (1623)
++ +....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.
T Consensus 253 ----~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~ 325 (506)
T PRK13549 253 ----HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGK 325 (506)
T ss_pred ----cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCE
Confidence 00 01124899999999942 12369999999999999999999999999999999999999 59999999999
Q ss_pred ecCCCCh-HHhhhceEEEcCCC---cccc-ccHHhhcCCCC--CC------CHHHHHHHHHHhcHHHHHHhccCCcch-h
Q 000351 1303 DIAKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS--EH------SDADLWEALERAHLKDAIRRNSLGLDA-Q 1368 (1623)
Q Consensus 1303 di~~i~~-~~lR~~i~~vpQdp---~Lf~-gTIr~NLd~~~--~~------sd~~i~~aL~~~~l~~~i~~lp~gLdt-~ 1368 (1623)
++...+. +..|++++|+||+| .+|. .|+.+|+.... .. +.++ .+..+.+.++.+ |++. .
T Consensus 326 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~ 398 (506)
T PRK13549 326 PVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTAS 398 (506)
T ss_pred ECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCC
Confidence 9875543 34577899999997 3564 59999996311 11 1111 111233444443 3431 2
Q ss_pred hhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEE
Q 000351 1369 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 1446 (1623)
Q Consensus 1369 v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl 1446 (1623)
.......||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. |||+++|
T Consensus 399 ~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l 478 (506)
T PRK13549 399 PELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVM 478 (506)
T ss_pred cccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 344456799999999999999999999999999999999999999999998764 47899999999999977 9999999
Q ss_pred eCceEeeecChhHHh
Q 000351 1447 DSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1447 ~~G~ive~Gtp~eLl 1461 (1623)
++|+++..|+++++.
T Consensus 479 ~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 479 HEGKLKGDLINHNLT 493 (506)
T ss_pred ECCEEEEEeccccCC
Confidence 999999999988763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=661.39 Aligned_cols=442 Identities=23% Similarity=0.355 Sum_probs=335.1
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------- 678 (1623)
+.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+.
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~ 79 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG-TITINNINYNKLDHKLAAQ 79 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCcc-EEEECCEECCCCCHHHHHH
Confidence 35899999999963 5799999999999999999999999999999999999999998 43332
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCC-------C---CH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccCh
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSA-------F---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 743 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~-------~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 743 (1623)
..|+|++|++.++ +.||+||+.++.. . +. ++..+.++.+++.+. ......+|||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSg 148 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSI 148 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCH
Confidence 3599999999876 5699999987531 0 11 123334444444322 2234468999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecC
Q 000351 744 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 744 GQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 822 (1623)
||||||+|||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|+|||+++++. .||+|++|++|+++..|+
T Consensus 149 G~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 149 SHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999999999866554445899999999999986 589999999999988776
Q ss_pred hhHHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchH
Q 000351 823 FEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSF 902 (1623)
Q Consensus 823 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 902 (1623)
++++... ....
T Consensus 229 ~~~~~~~-----~~~~---------------------------------------------------------------- 239 (510)
T PRK09700 229 VSDVSND-----DIVR---------------------------------------------------------------- 239 (510)
T ss_pred hhhCCHH-----HHHH----------------------------------------------------------------
Confidence 5443100 0000
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 903 KVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISS 982 (1623)
Q Consensus 903 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~ 982 (1623)
.+.
T Consensus 240 ----~~~------------------------------------------------------------------------- 242 (510)
T PRK09700 240 ----LMV------------------------------------------------------------------------- 242 (510)
T ss_pred ----Hhc-------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 000351 983 LYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 1062 (1623)
Q Consensus 983 ~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1623)
|+ + +
T Consensus 243 ----------------------------~~-------~---~-------------------------------------- 246 (510)
T PRK09700 243 ----------------------------GR-------E---L-------------------------------------- 246 (510)
T ss_pred ----------------------------CC-------C---c--------------------------------------
Confidence 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1063 LLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAI 1142 (1623)
Q Consensus 1063 l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1142 (1623)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 000351 1143 RLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPL 1222 (1623)
Q Consensus 1143 ~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~ 1222 (1623)
. .+ +.......
T Consensus 247 ------------------------~----------------------------------------~~---~~~~~~~~-- 257 (510)
T PRK09700 247 ------------------------Q----------------------------------------NR---FNAMKENV-- 257 (510)
T ss_pred ------------------------c----------------------------------------cc---cccccccc--
Confidence 0 00 00000000
Q ss_pred cccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCE
Q 000351 1223 VIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 1302 (1623)
Q Consensus 1223 ~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~ 1302 (1623)
.++ +....|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.
T Consensus 258 -----~~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~ 325 (510)
T PRK09700 258 -----SNL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGK 325 (510)
T ss_pred -----ccC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCE
Confidence 000 0112499999999763 3899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCh-HHhhhceEEEcCCC---ccccc-cHHhhcCCCCC------------CCHHHHHHHHHHhcHHHHHHhccCCc
Q 000351 1303 DIAKFGL-MDLRKILGIIPQSP---VLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGL 1365 (1623)
Q Consensus 1303 di~~i~~-~~lR~~i~~vpQdp---~Lf~g-TIr~NLd~~~~------------~sd~~i~~aL~~~~l~~~i~~lp~gL 1365 (1623)
++...+. ..+|++++|+||++ .+|.. |+++|+..... ....+ .+..+.+.++.+ |+
T Consensus 326 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l 398 (510)
T PRK09700 326 DISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL--AL 398 (510)
T ss_pred ECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc--CC
Confidence 9876544 45677899999984 57765 99999864211 01111 011123334432 34
Q ss_pred c-hhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCE
Q 000351 1366 D-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDR 1442 (1623)
Q Consensus 1366 d-t~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~Dr 1442 (1623)
. .........||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. |||
T Consensus 399 ~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred CCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCE
Confidence 3 22344456799999999999999999999999999999999999999999998764 47899999999999876 999
Q ss_pred EEEEeCceEeeecChhH
Q 000351 1443 ILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1443 I~Vl~~G~ive~Gtp~e 1459 (1623)
|++|++|++++.+++.+
T Consensus 479 i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 479 IAVFCEGRLTQILTNRD 495 (510)
T ss_pred EEEEECCEEEEEecCcc
Confidence 99999999999887633
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-63 Score=641.22 Aligned_cols=545 Identities=23% Similarity=0.314 Sum_probs=438.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 292 LRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFR 371 (1623)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 371 (1623)
++.+++.+++.++..+++.++..++.++.|++++.+++.+-..........+++.++++.++..+......+...+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGER 88 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888899999999999999999999843222211111222223333333444445556667788999
Q ss_pred HHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000351 372 LRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 450 (1623)
Q Consensus 372 ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~ 450 (1623)
+...++..+|+|.++.+.....+.+.|++++++++|++.+.+++. .+..++...+.+++++++++...++.+++.++.+
T Consensus 89 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 168 (576)
T TIGR02204 89 VVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAV 168 (576)
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999888888999999999999999988753 3445555555555555555555555555544455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 451 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFIL 530 (1623)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~ 530 (1623)
++.+.+..++.+++++..++.++..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+...+.
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (576)
T TIGR02204 169 PLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIV 248 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566788888899999999999999999999999999999999999998888877776665555444433333332
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CC-
Q 000351 531 NSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP- 606 (1623)
Q Consensus 531 ~~~~--~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~-~~- 606 (1623)
.... ..+.++.+|.+.+..+.+|++.++++..++..+..|+..++..+..+.++..+++||.++++.++..... .+
T Consensus 249 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 328 (576)
T TIGR02204 249 IVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK 328 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCc
Confidence 2221 2234445677777788999999999999999999999999999999999999999999999865432111 11
Q ss_pred -CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------
Q 000351 607 -PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------- 678 (1623)
Q Consensus 607 -~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------- 678 (1623)
...+....|+++|++|+|+++.++++|+|+||+++|||+++|+|+||||||||+++|+|+++|.+| .+.++
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G-~I~i~g~~i~~~ 407 (576)
T TIGR02204 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG-RILLDGVDLRQL 407 (576)
T ss_pred cCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhc
Confidence 011122469999999999854346899999999999999999999999999999999999999999 55443
Q ss_pred ------CcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 679 ------GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 679 ------~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
+.|+||||+|++|++||+|||.++.+ .++++.+++++.+++.++++.+|+|++|.+|++|.+||||||||++|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 36999999999999999999999865 57889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcCh
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 831 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 831 (1623)
|||++++|+++|||||||+||+++++.+++.+.. ..+++|+|+|||+.+.++.+|+|++|++|++++.|+++++.+..+
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 9999999999999999999999999999876654 457899999999999999999999999999999999999998888
Q ss_pred hHHHhHH
Q 000351 832 LFQKLME 838 (1623)
Q Consensus 832 ~~~~~~~ 838 (1623)
.|+++..
T Consensus 567 ~~~~l~~ 573 (576)
T TIGR02204 567 LYARLAR 573 (576)
T ss_pred hHHHHHh
Confidence 8877654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-63 Score=636.24 Aligned_cols=539 Identities=19% Similarity=0.252 Sum_probs=430.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC--chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 295 LNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQ-QDGP--AWIGYI-YAFSIFVGVVLGVLCEAQYFQNVMRVGF 370 (1623)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~-~~~~--~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 370 (1623)
+.+.+++.++.++++.++..++..+.|.+++.+++... .+.. ....+. .+++++++.++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999999998653 2211 001111 1223333444556666666667778999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000351 371 RLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALL 449 (1623)
Q Consensus 371 ~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~ 449 (1623)
++...++..+|+|.++++....++.++|++++++++|++.+.+++. .+..+....+.+++++++++...+..+++.+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999764 345555556666666665555544455544444
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 450 LVFMFP-VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSF 528 (1623)
Q Consensus 450 ~~~~~~-~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~ 528 (1623)
+++..+ +..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+..........
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333 3456677778888888999999999999999999999999999999999988887776666666555554444
Q ss_pred HHHHHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-
Q 000351 529 ILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVL-RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP- 604 (1623)
Q Consensus 529 ~~~~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l-~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~- 604 (1623)
+......+ +.++.++.+. ..+.++++..++++.+...+ ..|+..++..+..+.++.++++||.++++.++....+
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 43333222 2234445555 46788999888877665443 4588889999999999999999999999876532211
Q ss_pred CCCCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc------
Q 000351 605 NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------ 678 (1623)
Q Consensus 605 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------ 678 (1623)
.....+....|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++| .+.+.
T Consensus 329 ~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G-~I~i~g~~i~~ 406 (574)
T PRK11160 329 TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG-EILLNGQPIAD 406 (574)
T ss_pred ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhh
Confidence 11111223469999999999743 35799999999999999999999999999999999999999999 44433
Q ss_pred -------CcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 679 -------GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 679 -------~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
..|+||||+|++|++||+|||.++.+ .+++++.++++.++++++++. |+|++|.+||+|.+||||||||++
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 35999999999999999999999865 688899999999999999999 999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
||||++++|+++|||||||+||+++++.|.+.+. ...+++|+|+|||+++.++.||+|++|++|+++++|+|+|+++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 9999999999999999999999999999988654 445789999999999999999999999999999999999999999
Q ss_pred hhHHHhHH
Q 000351 831 ELFQKLME 838 (1623)
Q Consensus 831 ~~~~~~~~ 838 (1623)
+.|+++++
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 99888764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=648.21 Aligned_cols=544 Identities=21% Similarity=0.290 Sum_probs=452.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 292 LRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFR 371 (1623)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 371 (1623)
++..++.+++.++..++..++..++.++.|++++.++|.+-........+.++++++++.++..++.....+...+++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSR 209 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888999999999999999999999875332222223334444455555666666666777888999
Q ss_pred HHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000351 372 LRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLL 450 (1623)
Q Consensus 372 ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~ 450 (1623)
+...++..+|+|.++++....++.++|++++++ +|++.+.+++. .+.......+.+++.+++++...++.+++.++++
T Consensus 210 ~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 288 (694)
T TIGR01846 210 IDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSL 288 (694)
T ss_pred HHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 69999998753 3444444444445555666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 451 VFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFIL 530 (1623)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~ 530 (1623)
++.+.+..++.+++++..++..+..+++.+.+.|.++|+++||.+|.|+.+.+++.+..++..+...+..........+.
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR01846 289 VCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAI 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888899999999999999999999999999999999999998888877777666666555554444
Q ss_pred HHHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC-CC
Q 000351 531 NSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-PP 607 (1623)
Q Consensus 531 ~~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-~~ 607 (1623)
..+..+ +.++.+|.+.+..+.+|++.++++..+...+..|+..+...+..+.++.++++|+.++++.++...... ..
T Consensus 369 ~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~ 448 (694)
T TIGR01846 369 ELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAA 448 (694)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCC
Confidence 433322 334566777778889999999999999999999999999999999999999999999998765432111 11
Q ss_pred CCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------
Q 000351 608 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------- 677 (1623)
Q Consensus 608 ~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------- 677 (1623)
.......|+++|++|+|+++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++| .+.+
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G-~I~idg~~i~~~~~ 526 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG-QVLVDGVDLAIADP 526 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEehhhCCH
Confidence 11223469999999999753 46799999999999999999999999999999999999999999 4443
Q ss_pred ---cCcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 678 ---RGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 678 ---~~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
+..|+||||+|++|++||+|||.++.+ .++++..++++.+++.+.++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 345999999999999999999999864 6788999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhH
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 833 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 833 (1623)
|++++|+|+|||||||+||+++++.+.+.+.. ..+++|+|+|||+++.++.||+|++|++|+++++|+++++++.++.|
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y 685 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLY 685 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChH
Confidence 99999999999999999999999999987654 45789999999999999999999999999999999999999988999
Q ss_pred HHhHHh
Q 000351 834 QKLMEN 839 (1623)
Q Consensus 834 ~~~~~~ 839 (1623)
+++...
T Consensus 686 ~~l~~~ 691 (694)
T TIGR01846 686 ARLWQQ 691 (694)
T ss_pred HHHHHh
Confidence 888753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=653.21 Aligned_cols=201 Identities=17% Similarity=0.334 Sum_probs=171.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|. ++++
T Consensus 319 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 59999999999643 6999999999999999999999999999999999999999999999872 5799
Q ss_pred EEcCCCc--ccc-ccHHhhcCCCC--CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1318 IIPQSPV--LFS-GTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1318 ~vpQdp~--Lf~-gTIr~NLd~~~--~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
|+||++. ++. .|+++|+..+. ...++++.++++..++.. ........+||||||||++||||++.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999984 443 59999986432 223445666666665521 12233446799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEe-eecChhHHhhc
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSN 1463 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~Gtp~eLl~~ 1463 (1623)
+|+||||||||++||+.+.+.+.+.|++. ++|||+|||+++.+.. ||||++|++|+++ ..|+++++++.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999885 5699999999999987 9999999999998 77999988754
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-63 Score=636.16 Aligned_cols=539 Identities=19% Similarity=0.259 Sum_probs=429.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 295 LNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRS 374 (1623)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~ 374 (1623)
.++.++..++..++..++..++.++.|++++.+++.+..... ... +++.+++..++..+......+...+...++|.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--IFP-LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888899999999999999999998765321 111 11111122222223333334455677788888
Q ss_pred HHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000351 375 TLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 453 (1623)
Q Consensus 375 ~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~ 453 (1623)
.++..+|+|.++++.....+.+.|++++++++|++.+.+.+. .+..+....+.+++.+++++..-++.+++.++++++.
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~ 169 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVY 169 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999987543 3444444444444444444444444555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 454 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 533 (1623)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~ 533 (1623)
..+..++.+++.+.+++..+..++..+...|.++|+++||.|+.++.+.+++.+.-++..+...+..........+....
T Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK13657 170 TLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAA 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888889999999999999999999999999999999888887766665554443333333322222222
Q ss_pred H--HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CC-CCC
Q 000351 534 P--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP-PLT 609 (1623)
Q Consensus 534 ~--~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~-~~-~~~ 609 (1623)
. ..+.++.++.+.+..|.+|++.+++++.++..+..|+..+...+..+.++..+++|+.++++.++..... .. ...
T Consensus 250 ~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 329 (588)
T PRK13657 250 STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLG 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcC
Confidence 1 2334556677777889999999999999999999999999999999999999999999998764432111 10 111
Q ss_pred CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------
Q 000351 610 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR----------- 678 (1623)
Q Consensus 610 ~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~----------- 678 (1623)
.....|+++|++|+|++ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++| .+.++
T Consensus 330 ~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G-~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 330 RVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RILIDGTDIRTVTRAS 406 (588)
T ss_pred CCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEhhhCCHHH
Confidence 12246999999999974 35799999999999999999999999999999999999999998 54433
Q ss_pred --CcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHH
Q 000351 679 --GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 679 --~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal 755 (1623)
..|+|+||+|++|++||||||.++++ .++++.+++++.+++.+.++.+|+|.+|.+|++|.+||||||||++||||+
T Consensus 407 ~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999864 678889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHH
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 835 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1623)
+++|+|+|||||||+||+++++.|++.+.. ..+++|+|+||||.+.++.||+|++|++|+++++|+++++++..+.|.+
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAA 565 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHH
Confidence 999999999999999999999999887654 4468999999999999999999999999999999999999988888888
Q ss_pred hHHhh
Q 000351 836 LMENA 840 (1623)
Q Consensus 836 ~~~~~ 840 (1623)
+....
T Consensus 566 l~~~~ 570 (588)
T PRK13657 566 LLRAQ 570 (588)
T ss_pred HHHHh
Confidence 87644
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-66 Score=651.04 Aligned_cols=435 Identities=21% Similarity=0.350 Sum_probs=333.5
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------C
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------G 679 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------------~ 679 (1623)
.++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+. .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS-ILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHhC
Confidence 5899999999963 57999999999999999999999999999999999999999984 3322 3
Q ss_pred cEEEEccCcccC-cccHHHHHhcCCC-------CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 680 TVAYVPQVSWIF-NATVRDNILFGSA-------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 680 ~iay~~Q~~~l~-~~Tv~enI~~g~~-------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
.++|++|++.++ +.|++||+.++.. .+. ++..+.++..++.+.. .....+|||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~q 148 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSIGEQQ 148 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHH
Confidence 599999998776 5799999988632 122 1233344444443222 2334589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 826 (1623)
|++|||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++. .||+|++|++|++++.|+.+++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999998765554445899999999999986 5899999999999876643321
Q ss_pred hhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHHHH
Q 000351 827 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 906 (1623)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 906 (1623)
... +
T Consensus 229 ~~~---------------------------------------------------------------~------------- 232 (501)
T PRK10762 229 TED---------------------------------------------------------------S------------- 232 (501)
T ss_pred CHH---------------------------------------------------------------H-------------
Confidence 000 0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 907 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 986 (1623)
Q Consensus 907 ~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s 986 (1623)
..... +
T Consensus 233 -~~~~~-----------------------------~-------------------------------------------- 238 (501)
T PRK10762 233 -LIEMM-----------------------------V-------------------------------------------- 238 (501)
T ss_pred -HHHHh-----------------------------c--------------------------------------------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 000351 987 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 1066 (1623)
Q Consensus 987 ~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1066 (1623)
|
T Consensus 239 ------------------------~------------------------------------------------------- 239 (501)
T PRK10762 239 ------------------------G------------------------------------------------------- 239 (501)
T ss_pred ------------------------C-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1067 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 1146 (1623)
Q Consensus 1067 ~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1146 (1623)
.
T Consensus 240 ----------------------~--------------------------------------------------------- 240 (501)
T PRK10762 240 ----------------------R--------------------------------------------------------- 240 (501)
T ss_pred ----------------------C---------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccC
Q 000351 1147 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 1226 (1623)
Q Consensus 1147 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~ 1226 (1623)
+... ..|.. +
T Consensus 241 --------------------------------------------------------------~~~~--~~~~~-~----- 250 (501)
T PRK10762 241 --------------------------------------------------------------KLED--QYPRL-D----- 250 (501)
T ss_pred --------------------------------------------------------------Cccc--ccccc-c-----
Confidence 0000 00000 0
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC
Q 000351 1227 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 1306 (1623)
Q Consensus 1227 ~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~ 1306 (1623)
.+ +..-.|+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 251 --~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 251 --KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVT 318 (501)
T ss_pred --cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 00 0111489999984 37999999999999999999999999999999999999999999999999987
Q ss_pred CChH-HhhhceEEEcCCC---cccc-ccHHhhcCCCC-----C----CCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhc
Q 000351 1307 FGLM-DLRKILGIIPQSP---VLFS-GTVRFNLDPFS-----E----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSE 1371 (1623)
Q Consensus 1307 i~~~-~lR~~i~~vpQdp---~Lf~-gTIr~NLd~~~-----~----~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e 1371 (1623)
.+.. .+|++++|+||+| .+|. .|+++|+.... . .+.++. ...+.++++.+ |+. .....
T Consensus 319 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~ 391 (501)
T PRK10762 319 RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQ 391 (501)
T ss_pred CCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccC
Confidence 6653 4677899999997 3554 59999996311 0 111110 11233344442 442 23445
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCc
Q 000351 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSG 1449 (1623)
Q Consensus 1372 ~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G 1449 (1623)
....||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|
T Consensus 392 ~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 392 AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 556799999999999999999999999999999999999999999999875 47899999999999877 9999999999
Q ss_pred eEeeecChhHH
Q 000351 1450 RVLEYDTPEEL 1460 (1623)
Q Consensus 1450 ~ive~Gtp~eL 1460 (1623)
++++.|+++++
T Consensus 472 ~i~~~~~~~~~ 482 (501)
T PRK10762 472 RISGEFTREQA 482 (501)
T ss_pred EEEEEeccccC
Confidence 99999998775
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=649.31 Aligned_cols=450 Identities=23% Similarity=0.394 Sum_probs=341.7
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------- 678 (1623)
+.++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+.
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG-TLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHh
Confidence 46999999999963 5799999999999999999999999999999999999999998 44332
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCCCC---HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
..+||++|++.++ +.||+||+.++.... +++..+.++..++.+..+ ....+|||||||||+||||
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEILRG 154 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHHHHH
Confidence 2499999999886 569999999874322 234455566666543222 3345899999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcChhH
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELF 833 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 833 (1623)
|+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++....
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~--- 231 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD--- 231 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH---
Confidence 99999999999999999999999999866554445899999999999876 58999999999999888776543100
Q ss_pred HHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHHHHHHHHhhh
Q 000351 834 QKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALG 913 (1623)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 913 (1623)
... .+..
T Consensus 232 --~~~--------------------------------------------------------------------~~~~--- 238 (510)
T PRK15439 232 --IIQ--------------------------------------------------------------------AITP--- 238 (510)
T ss_pred --HHH--------------------------------------------------------------------HHhC---
Confidence 000 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 914 GLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 993 (1623)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~l 993 (1623)
.
T Consensus 239 ~------------------------------------------------------------------------------- 239 (510)
T PRK15439 239 A------------------------------------------------------------------------------- 239 (510)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 994 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 1073 (1623)
Q Consensus 994 l~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 1073 (1623)
+ ..
T Consensus 240 -------~--------~~-------------------------------------------------------------- 242 (510)
T PRK15439 240 -------A--------RE-------------------------------------------------------------- 242 (510)
T ss_pred -------c--------cc--------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1074 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 1153 (1623)
Q Consensus 1074 y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 1153 (1623)
.+.+.
T Consensus 243 -----~~~~~---------------------------------------------------------------------- 247 (510)
T PRK15439 243 -----KSLSA---------------------------------------------------------------------- 247 (510)
T ss_pred -----ccccc----------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCC
Q 000351 1154 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 1233 (1623)
Q Consensus 1154 ~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~w 1233 (1623)
..+. . ...|...+ ..+
T Consensus 248 -----------------------------------------------------~~~~-~-~~~~~~~~------~~~--- 263 (510)
T PRK15439 248 -----------------------------------------------------SQKL-W-LELPGNRR------QQA--- 263 (510)
T ss_pred -----------------------------------------------------cccc-c-cccccccc------ccC---
Confidence 0000 0 00000000 000
Q ss_pred CCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH-h
Q 000351 1234 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-L 1312 (1623)
Q Consensus 1234 p~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~-l 1312 (1623)
+..-.|+++|++. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .
T Consensus 264 ~~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 336 (510)
T PRK15439 264 AGAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRL 336 (510)
T ss_pred CCCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 0112489999983 2699999999999999999999999999999999999999999999999998776654 4
Q ss_pred hhceEEEcCCC---ccccc-cHHhhcCCC--C--C--CCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCCChhHH
Q 000351 1313 RKILGIIPQSP---VLFSG-TVRFNLDPF--S--E--HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1313 R~~i~~vpQdp---~Lf~g-TIr~NLd~~--~--~--~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~LSgGQr 1381 (1623)
|++|+|+||++ .+|.. |+.+|+..+ . . ....+. +..+.++++.+ |++ .........||||||
T Consensus 337 ~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 409 (510)
T PRK15439 337 ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQ 409 (510)
T ss_pred hCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHH
Confidence 56899999996 36654 999998421 1 0 011111 11233444443 443 334555567999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhH
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~e 1459 (1623)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|++|+++..|++++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999999864 47899999999999987 99999999999999999987
Q ss_pred Hhh
Q 000351 1460 LLS 1462 (1623)
Q Consensus 1460 Ll~ 1462 (1623)
+..
T Consensus 490 ~~~ 492 (510)
T PRK15439 490 INV 492 (510)
T ss_pred CCH
Confidence 653
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=630.99 Aligned_cols=535 Identities=25% Similarity=0.366 Sum_probs=433.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 299 LGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVA 378 (1623)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~ 378 (1623)
++ .++.+.++.++..++....|.++..+++.+.. .......+...++++.++..++...+.+.....+.++...++.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 78888888999999999999999999998871 1111122222333333344555555555566667899999999
Q ss_pred HHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000351 379 AVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWS-APFRIIISLVLLYNELGVASLLGALLLVFMFPVQ 457 (1623)
Q Consensus 379 ~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~-~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~~~ 457 (1623)
.+|+|.++++....++...|++++++++|++.+...+........ .++.++..+++++..-...+++.+++.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 169 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVL 169 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765433333 4444444444444443345555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000351 458 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 535 (1623)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~--~ 535 (1623)
.++.++..+..++..+..++..+.+.|.++|++.||.|+.++...++..+..++..+...+..........+..... .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (567)
T COG1132 170 SLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLG 249 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888999999999999999999999999999999988777777666555554443333333322222221 2
Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcE
Q 000351 536 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 615 (1623)
Q Consensus 536 ~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i 615 (1623)
.+.++.++.+.+..+.++++.+.+.+.++..+..|+..+...+..+..+..+++|+.++++.++...............|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I 329 (567)
T COG1132 250 TVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSI 329 (567)
T ss_pred HHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeE
Confidence 23344555666677789999999999999999999999999999999999999999999998654322221112233459
Q ss_pred EEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCcEE
Q 000351 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVA 682 (1623)
Q Consensus 616 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ia 682 (1623)
+++|++|+|++ ++++|+|+||++++||++|||||+|||||||+++|+|+++|++| .+.+ +.+||
T Consensus 330 ~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G-~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 330 EFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG-EILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred EEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCEehhhcCHHHHHHhcc
Confidence 99999999985 46899999999999999999999999999999999999999999 4443 34699
Q ss_pred EEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000351 683 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1623)
Q Consensus 683 y~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~i 761 (1623)
||||+|++|++||+|||.+|++ .++++..++++.+++++.+..+|+|++|.+||+|.+||||||||++||||++++|+|
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I 486 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999987 688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHhh
Q 000351 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840 (1623)
Q Consensus 762 llLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 840 (1623)
++||||||+||+++++.|.+.+. ...++||+|+|+||++.+..||+|++|++|+|+++|+|+||+++++.|++++..+
T Consensus 487 LILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 487 LILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred EEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999998765 4447899999999999999999999999999999999999999999999988654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=648.27 Aligned_cols=441 Identities=20% Similarity=0.302 Sum_probs=330.1
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccC--CCCCeEEEc--------------
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIR-------------- 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~~~-------------- 678 (1623)
++++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++| ++| .+.+.
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G-~i~~~g~~~~~~~~~~~~~ 77 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG-EIYWSGSPLKASNIRDTER 77 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHHHh
Confidence 789999999963 5799999999999999999999999999999999999987 678 44332
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCCC-------CHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSAF-------EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~~-------~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
..|+|++|++.++ +.|++||+.++... +.+ +..++++..++.+.. + .....+||||||
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG~~ 147 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------V----TRPVGDYGGGQQ 147 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------c----cCchhhCCHHHH
Confidence 3599999999876 56999999876321 111 223334444432211 1 122457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 825 (1623)
|||+|||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|+|||+++++.. ||+|++|++|+++..|+.++
T Consensus 148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999999999998665544468999999999999864 89999999999876543211
Q ss_pred HhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHHH
Q 000351 826 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVL 905 (1623)
Q Consensus 826 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 905 (1623)
+.. +. ..
T Consensus 228 ~~~----------------------------------------------------------------~~---------~~ 234 (500)
T TIGR02633 228 MSE----------------------------------------------------------------DD---------II 234 (500)
T ss_pred CCH----------------------------------------------------------------HH---------HH
Confidence 000 00 00
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 906 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 985 (1623)
Q Consensus 906 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~ 985 (1623)
..+.
T Consensus 235 ~~~~---------------------------------------------------------------------------- 238 (500)
T TIGR02633 235 TMMV---------------------------------------------------------------------------- 238 (500)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 000351 986 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 1065 (1623)
Q Consensus 986 s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1065 (1623)
|
T Consensus 239 -------------------------~------------------------------------------------------ 239 (500)
T TIGR02633 239 -------------------------G------------------------------------------------------ 239 (500)
T ss_pred -------------------------C------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1066 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLE 1145 (1623)
Q Consensus 1066 ~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1145 (1623)
+ +
T Consensus 240 -----------------------~-~------------------------------------------------------ 241 (500)
T TIGR02633 240 -----------------------R-E------------------------------------------------------ 241 (500)
T ss_pred -----------------------c-c------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 000351 1146 IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 1225 (1623)
Q Consensus 1146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~ 1225 (1623)
. . . ..+.+.
T Consensus 242 --------------------~------~-----------------------------------~-----~~~~~~----- 250 (500)
T TIGR02633 242 --------------------I------T-----------------------------------S-----LYPHEP----- 250 (500)
T ss_pred --------------------c------c-----------------------------------c-----cccccc-----
Confidence 0 0 0 000000
Q ss_pred CCCCCCCCCCCccEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-CCcEEEECCEe
Q 000351 1226 SNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFD 1303 (1623)
Q Consensus 1226 ~~~~~~~wp~~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-~~G~I~IdG~d 1303 (1623)
.+ +..-.|+++|++++|+.+ ...+|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.+
T Consensus 251 --~~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~ 324 (500)
T TIGR02633 251 --HE----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKP 324 (500)
T ss_pred --cC----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEE
Confidence 00 011148999999999421 23699999999999999999999999999999999999995 89999999999
Q ss_pred cCCCCh-HHhhhceEEEcCCC---cccc-ccHHhhcCCCC-----C---CCHHHHHHHHHHhcHHHHHHhccCCcch-hh
Q 000351 1304 IAKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS-----E---HSDADLWEALERAHLKDAIRRNSLGLDA-QV 1369 (1623)
Q Consensus 1304 i~~i~~-~~lR~~i~~vpQdp---~Lf~-gTIr~NLd~~~-----~---~sd~~i~~aL~~~~l~~~i~~lp~gLdt-~v 1369 (1623)
+...+. ..+|++++|+||++ .+|. .|+++|+.... . ....+ .+..+.++++.+ |+.. ..
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~ 397 (500)
T TIGR02633 325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASP 397 (500)
T ss_pred CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCc
Confidence 875443 46788899999996 4665 49999997421 0 01111 111223334433 3321 22
Q ss_pred hcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEe
Q 000351 1370 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLD 1447 (1623)
Q Consensus 1370 ~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~ 1447 (1623)
......||||||||++|||||+.+|+||||||||++||+.+.+.+++.|++.. ++.|||+|||+++.+.. ||||++|+
T Consensus 398 ~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 398 FLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred cCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 33445799999999999999999999999999999999999999999998864 47899999999999977 99999999
Q ss_pred CceEeeecChhH
Q 000351 1448 SGRVLEYDTPEE 1459 (1623)
Q Consensus 1448 ~G~ive~Gtp~e 1459 (1623)
+|+++..++.++
T Consensus 478 ~G~i~~~~~~~~ 489 (500)
T TIGR02633 478 EGKLKGDFVNHA 489 (500)
T ss_pred CCEEEEEEcccc
Confidence 999998776544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=648.32 Aligned_cols=439 Identities=21% Similarity=0.295 Sum_probs=331.6
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------c
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------R 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~ 678 (1623)
+.++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+ +
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~ 78 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS-ILIDGQEMRFASTTAALA 78 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHh
Confidence 36899999999963 56999999999999999999999999999999999999999984 332 2
Q ss_pred CcEEEEccCcccCc-ccHHHHHhcCCC------CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 679 GTVAYVPQVSWIFN-ATVRDNILFGSA------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~-~Tv~enI~~g~~------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
..|+|++|++.++. .||+||+.++.. .+. ++..+.++.+++... ......+|||||||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~q 147 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQ 147 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHH
Confidence 35999999998874 699999987631 122 233444555544321 12344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 826 (1623)
|++||||++.+|+++||||||++||+.+.+++++.+.....+|+|+|+|||+++++. .||+|++|++|+++..++..+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 227 (501)
T PRK11288 148 MVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQ 227 (501)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 999999999999999999999999999999999866554445899999999999886 4899999999998753321000
Q ss_pred hhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHHHH
Q 000351 827 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 906 (1623)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 906 (1623)
. ..+.
T Consensus 228 -----------------------------~----------------------------------~~~~------------ 232 (501)
T PRK11288 228 -----------------------------V----------------------------------DRDQ------------ 232 (501)
T ss_pred -----------------------------C----------------------------------CHHH------------
Confidence 0 0000
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 907 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 986 (1623)
Q Consensus 907 ~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s 986 (1623)
+...
T Consensus 233 -~~~~--------------------------------------------------------------------------- 236 (501)
T PRK11288 233 -LVQA--------------------------------------------------------------------------- 236 (501)
T ss_pred -HHHH---------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 000351 987 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 1066 (1623)
Q Consensus 987 ~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1066 (1623)
+
T Consensus 237 ------------------------------~------------------------------------------------- 237 (501)
T PRK11288 237 ------------------------------M------------------------------------------------- 237 (501)
T ss_pred ------------------------------h-------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1067 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 1146 (1623)
Q Consensus 1067 ~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1146 (1623)
.
T Consensus 238 ------------------~------------------------------------------------------------- 238 (501)
T PRK11288 238 ------------------V------------------------------------------------------------- 238 (501)
T ss_pred ------------------c-------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccC
Q 000351 1147 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 1226 (1623)
Q Consensus 1147 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~ 1226 (1623)
..... +. .+.+ +.
T Consensus 239 ----------------~~~~~-----------------------------------------~~-----~~~~-~~---- 251 (501)
T PRK11288 239 ----------------GREIG-----------------------------------------DI-----YGYR-PR---- 251 (501)
T ss_pred ----------------CCCcc-----------------------------------------cc-----cccc-cc----
Confidence 00000 00 0000 00
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC
Q 000351 1227 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 1306 (1623)
Q Consensus 1227 ~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~ 1306 (1623)
+ +....++++|++++ .+++|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..
T Consensus 252 --~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~ 319 (501)
T PRK11288 252 --P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDI 319 (501)
T ss_pred --C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCC
Confidence 0 01124899999742 48999999999999999999999999999999999999999999999999875
Q ss_pred CCh-HHhhhceEEEcCCCc---ccc-ccHHhhcCCCCC---------CCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhc
Q 000351 1307 FGL-MDLRKILGIIPQSPV---LFS-GTVRFNLDPFSE---------HSDADLWEALERAHLKDAIRRNSLGLD-AQVSE 1371 (1623)
Q Consensus 1307 i~~-~~lR~~i~~vpQdp~---Lf~-gTIr~NLd~~~~---------~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e 1371 (1623)
.+. +..|++++|+||+|. +|. .|+.+|+..... ....+- ...+.++++.+ |++ .....
T Consensus 320 ~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~ 392 (501)
T PRK11288 320 RSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQ 392 (501)
T ss_pred CCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccC
Confidence 443 445778999999973 554 699999864210 011000 11123333332 342 22344
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCc
Q 000351 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSG 1449 (1623)
Q Consensus 1372 ~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G 1449 (1623)
...+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|
T Consensus 393 ~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 393 LIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 456799999999999999999999999999999999999999999998864 47899999999999977 9999999999
Q ss_pred eEeeecChhHHh
Q 000351 1450 RVLEYDTPEELL 1461 (1623)
Q Consensus 1450 ~ive~Gtp~eLl 1461 (1623)
++++.|++++..
T Consensus 473 ~i~~~~~~~~~~ 484 (501)
T PRK11288 473 RIAGELAREQAT 484 (501)
T ss_pred EEEEEEccccCC
Confidence 999999988754
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=628.92 Aligned_cols=501 Identities=21% Similarity=0.229 Sum_probs=399.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 295 LNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIY-AFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1623)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir 373 (1623)
..+.+++.++...++.++..++..+.|++++.+++.+..... ...+.+ +.+++++.++..++.....+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888899999999999999999987654322 111111 111222333444444445556667888999
Q ss_pred HHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000351 374 STLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVF 452 (1623)
Q Consensus 374 ~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~ 452 (1623)
..++..+|+|.++++....++.++|++++++++|++.+.+.+. .+..+....+.+++++++++...+..+++.++.+++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999988999999999999999999998765 344555555556666665555555555555554444
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 453 MFPVQTFIIS-RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILN 531 (1623)
Q Consensus 453 ~~~~~~~~~~-~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~ 531 (1623)
+..+..++.+ ..++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444434443 345566777788899999999999999999999999999999999888777776666665555544444
Q ss_pred HHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC---C
Q 000351 532 SIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN---P 606 (1623)
Q Consensus 532 ~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---~ 606 (1623)
....+ +.++.++.+.+..|.++++.+.+.+.+...+..|+..++..+..+.++.++++|+.++++.++...... +
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 43332 233455666677889999999999999999999999999999999999999999999998665321111 0
Q ss_pred -CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC------
Q 000351 607 -PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------ 679 (1623)
Q Consensus 607 -~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~------ 679 (1623)
...+....|+++|++|+|++ ++++|+|+||+|++||+++||||||||||||+++|+|+++|++| .+.+.+
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~i~g~~i~~~ 402 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQG-EVTLDGVSVSSL 402 (529)
T ss_pred cccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhH
Confidence 01112346999999999974 34799999999999999999999999999999999999999999 665554
Q ss_pred ------cEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 680 ------TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 680 ------~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
.||||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|++|.+||+|.+||||||||++||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 7999999999999999999999864 688999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCc
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 800 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 800 (1623)
||++++|+|+|||||||+||+++++.|.+.+. ...+++|+|+||||+
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 99999999999999999999999999998765 456789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=629.03 Aligned_cols=527 Identities=20% Similarity=0.295 Sum_probs=424.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 000351 311 IGNDLSQFVGPLLLNQLLQSMQQDGP-AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITH 389 (1623)
Q Consensus 311 l~~~~~~~~~P~ll~~li~~l~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i~~K~l~l~~ 389 (1623)
++..++..+.|++++.+++.+..... ....+.+++.++++.++..++.....+...+.+.++...++..+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45666778899999999998754321 11222334444444445555555555566678889999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 390 EARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGV-ASLLGALLLVFMFPVQTFIISRMQKL 467 (1623)
Q Consensus 390 ~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~-~~l~g~~~~~~~~~~~~~~~~~~~~~ 467 (1623)
....+.++|++++++++|++.+..... .+..++..++.+++++++++..++| .+++.++++++.+.+...+.+++.+.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988889999999999999999987543 4555555555555555544334444 55565666666666677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000351 468 TKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--LVTVVSFGMF 545 (1623)
Q Consensus 468 ~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~--~~~~~~f~~~ 545 (1623)
.++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...... .+.++.+|.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999998888877666555544444444433333222222 2234456667
Q ss_pred HHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcEEEEeeEEEcC
Q 000351 546 TLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWD 625 (1623)
Q Consensus 546 ~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~ 625 (1623)
.+.++.+|++.+++++.++..+..|+..++..+..+.++.++.+||.++++.++...............|+++|++|+|+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~ 324 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYP 324 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECC
Confidence 77788999999999999999999999999999999999999999999999865432111111111234699999999997
Q ss_pred CCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCcEEEEccCcccCc
Q 000351 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVAYVPQVSWIFN 692 (1623)
Q Consensus 626 ~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~iay~~Q~~~l~~ 692 (1623)
.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++| .+.+ +..|+||+|+|++|+
T Consensus 325 ~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 402 (569)
T PRK10789 325 QT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG-DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402 (569)
T ss_pred CC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEHhhCCHHHHHhheEEEccCCeecc
Confidence 53 46799999999999999999999999999999999999999999 4433 246999999999999
Q ss_pred ccHHHHHhcCC-CCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCc
Q 000351 693 ATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 771 (1623)
Q Consensus 693 ~Tv~enI~~g~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~L 771 (1623)
+||+|||.++. +.++++++++++.+++.+++..+|+|++|.+|++|.+||||||||++||||++++|+++|||||||+|
T Consensus 403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 99999999985 46888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHhh
Q 000351 772 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840 (1623)
Q Consensus 772 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 840 (1623)
|+++++.+.+.+.. ..+|+|+|+|||+++.++.||+|++|++|+++++|+++++.++.+.|+++...+
T Consensus 483 D~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 483 DGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred CHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999987644 457899999999999999999999999999999999999999888888877643
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=625.63 Aligned_cols=522 Identities=21% Similarity=0.268 Sum_probs=419.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 298 SLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLV 377 (1623)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~ 377 (1623)
.+++.++..+++.++..++..+.|++++.+++.+.........+.+++.++++.++..++.....+...+.+.++...++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888889999999999999999999765322222223344445555666677777777778889999999999
Q ss_pred HHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000351 378 AAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQA--LHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFP 455 (1623)
Q Consensus 378 ~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~--~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~ 455 (1623)
..+|+|.++++.. ..+...+.+++|++++.+.+.. +..+...++.++.+ ++++...++.+++.++.+++.+.
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999863 2345678889999999986543 33444444444333 34444444455554444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 456 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 535 (1623)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~ 535 (1623)
+..+..++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........+......
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777788888999999999999999999999999999999999999888877666655554444444333333322
Q ss_pred --HHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCC
Q 000351 536 --LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP 613 (1623)
Q Consensus 536 --~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~ 613 (1623)
.+.++.+|.+.+..|.+|++.+++++.++..+..|+..+...+..+.++..+++||.++++.++...... .......
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~ 315 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLPEPEG 315 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCCCCCC
Confidence 2344567777777899999999999999999999999999999999999999999999997655422111 1112234
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.++++|++|+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++| .+.+ +..
T Consensus 316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-SVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEehhhCCHHHHhhh
Confidence 69999999999742 46899999999999999999999999999999999999999999 4433 236
Q ss_pred EEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCC
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~ 759 (1623)
++||||+|++|++|++|||.++.+ .+++++.++++.+++++.++.+|+|++|.+|++|.+||||||||++||||++++|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986654 7888999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
+++|||||||+||+++++.+.+.+.....+|+|+|++||+++.++.||+|++|++|+++++|+++++.+
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999998866543336899999999999999999999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=629.03 Aligned_cols=520 Identities=16% Similarity=0.126 Sum_probs=390.2
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 918 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 997 (1623)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~l 997 (1623)
+++.+++.++...+....++.++.+.+....... ..+..++++.++..++.++..++....+.+...+++.++++++
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l 96 (555)
T TIGR01194 20 TAFSIALGLAGGLAIIALLASINNAIHEENFLGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKI 96 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555566666666543211101 1222344455666777888888889999999999999999999
Q ss_pred hcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 998 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 1077 (1623)
Q Consensus 998 l~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~ 1077 (1623)
++.|+.||++.++|++++|+++|++.++..+.. +..++..+..++..++++++.+|.+.++++.++++.+.+..+..+.
T Consensus 97 ~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~ 175 (555)
T TIGR01194 97 LGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMG 175 (555)
T ss_pred HcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987753 6666677777777777888888877766555444444444443333
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1078 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 1155 (1623)
Q Consensus 1078 ~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 1155 (1623)
.++..+......+.+.+.+.|.+.|++++|+|+.++ ...+++.+..+...+.................++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (555)
T TIGR01194 176 GFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCA 255 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344444556788899999999999999999853 445555555555544433222222111111222211111111
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc---cCCCC--C
Q 000351 1156 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVI---ESNRP--P 1230 (1623)
Q Consensus 1156 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~---~~~~~--~ 1230 (1623)
..+.. ..+..+ .+.+...+.+...+..++..+...+..+.....+.+|+.++.+.+.+++... +.... .
T Consensus 256 ~~~~~-~~~~~t-----~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~ 329 (555)
T TIGR01194 256 LFAAA-MFASID-----AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLL 329 (555)
T ss_pred HHHHH-HhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 11111 113334 5556666677777888999999999999999999999999976432211110 00000 0
Q ss_pred CCCCCCccEEEEEEEEEeCCC---CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC
Q 000351 1231 PGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 1307 (1623)
Q Consensus 1231 ~~wp~~g~I~~~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i 1307 (1623)
+.....+.|+|+||+|+|++. .+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|++++
T Consensus 330 ~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~ 409 (555)
T TIGR01194 330 AHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD 409 (555)
T ss_pred ccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC
Confidence 111234679999999999653 23699999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1308 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1308 ~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+.+++|+++++|||||.+|++|+++|+. .+.++++++++++.++++++++++|+|+||. .+||||||||++||
T Consensus 410 ~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlala 482 (555)
T TIGR01194 410 SRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALI 482 (555)
T ss_pred CHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHH
Confidence 9999999999999999999999999974 3568899999999999999999999999994 68999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH-H-cCCcEEEEeecCchhhhccCEEEEEeCceEeee
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIRE-E-FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~-~-~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1454 (1623)
||++++|+|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 483 Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999987643 3 368999999999999999999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=689.65 Aligned_cols=248 Identities=25% Similarity=0.358 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHhh--cCCCCCCccccCCCCCCCCCCCc--cEEEEEEEEEeC--CCCCCcccceeeEeCCCCEEEE
Q 000351 1198 SLAENSLNAVERVGNYI--ELPSEAPLVIESNRPPPGWPSSG--SIKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGI 1271 (1623)
Q Consensus 1198 ~~~e~~~~aveRi~~~~--~~~~e~~~~~~~~~~~~~wp~~g--~I~~~nVs~~Y~--~~~~~vL~~isl~I~~GekvgI 1271 (1623)
...|+.+.++||..++. +.+.|.+.......++. ..| .++++||+++|+ ++.+++|+|||++|+|||++||
T Consensus 718 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI 794 (1394)
T TIGR00956 718 ETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794 (1394)
T ss_pred cccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEE
Confidence 34555667888887652 23333322111111111 133 479999999985 3335799999999999999999
Q ss_pred ecCCCCChhhHHHHhhcccc---CCCcEEEECCEecCCCChHHhhhceEEEcCCCccc-cccHHhhcCCC------CCCC
Q 000351 1272 VGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPF------SEHS 1341 (1623)
Q Consensus 1272 vGrsGSGKSTLl~lL~rl~~---p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf-~gTIr~NLd~~------~~~s 1341 (1623)
+||||||||||+++|.|+.+ |++|+|.+||.++. ..+|++++||||++.++ ..||||||++. ...+
T Consensus 795 ~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999997 78899999999985 25788999999998654 56999999732 1233
Q ss_pred HHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc-EEEEeCCCCCCCHHHHHHHHH
Q 000351 1342 DAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK-ILVLDEATAAVDVRTDALIQK 1416 (1623)
Q Consensus 1342 d~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~-ILlLDEpTS~LD~~Te~~Iq~ 1416 (1623)
+++ +.++++..++.+ -.|+.+++.|.+||||||||++|||||+.+|+ ||+||||||+||+.+...|++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~ 943 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICK 943 (1394)
T ss_pred HHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence 333 455666666543 35788888888999999999999999999997 999999999999999999999
Q ss_pred HHHHH-cCCcEEEEeecCchhh--hccCEEEEEeCc-eEeeecChhH
Q 000351 1417 TIREE-FKSCTMLIIAHRLNTI--IDCDRILLLDSG-RVLEYDTPEE 1459 (1623)
Q Consensus 1417 ~L~~~-~~~~TvI~IaHrl~ti--~~~DrI~Vl~~G-~ive~Gtp~e 1459 (1623)
.|++. .+|+|||+++|+++.. ..||+|++|++| +++++|++.+
T Consensus 944 ~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 944 LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99987 4689999999999974 459999999997 9999999854
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-61 Score=618.15 Aligned_cols=539 Identities=18% Similarity=0.234 Sum_probs=432.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 295 LNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRS 374 (1623)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~ 374 (1623)
.++.+++.++..+++.++..++..+.|++++.+++.+...... ..+++..++..++..+......+...++..++|.
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888889999999999999999999999977543221 1111111122223333333334456678888999
Q ss_pred HHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000351 375 TLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 453 (1623)
Q Consensus 375 ~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~ 453 (1623)
.++..+|+|.++++....++.++|++++++++|++.+.+.+. .+..+...++.+++.+++++...+..+++.++++++.
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~ 169 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILY 169 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653 3444455555555555555555555566656666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 454 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 533 (1623)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~ 533 (1623)
+.+..++.+++++..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+..........+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (585)
T TIGR01192 170 ILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMA 249 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888888899999999999999999999999999988888777665444444433333333332222
Q ss_pred HH--HHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--CCC
Q 000351 534 PV--LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLT 609 (1623)
Q Consensus 534 ~~--~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~--~~~ 609 (1623)
.. .+.++.+|.+.+..+.++++.+++++.++..+..|+..+...+..+.++..+++|+.++++.++....... ...
T Consensus 250 ~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~ 329 (585)
T TIGR01192 250 STISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELP 329 (585)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCC
Confidence 22 23445567777778899999999999999999999999999999999999999999999876543211111 111
Q ss_pred CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------
Q 000351 610 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 677 (1623)
Q Consensus 610 ~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------ 677 (1623)
.....++++|++|+|++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++| .+.+
T Consensus 330 ~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 330 NVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG-QILIDGIDINTVTRES 406 (585)
T ss_pred CCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC-EEEECCEEhhhCCHHH
Confidence 12346999999999974 35799999999999999999999999999999999999999999 4433
Q ss_pred -cCcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHH
Q 000351 678 -RGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 678 -~~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal 755 (1623)
+..++||||+|++|++|++|||.++.+ .++++..++++.+++.+.+..+|+|.+|.+|++|.+||||||||++||||+
T Consensus 407 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 246999999999999999999999854 577888899999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHH
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 835 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1623)
+++|+++|||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.||+|++|++|+++++|+++++.++++.|.+
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYK 565 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHH
Confidence 99999999999999999999999987654 44578999999999999999999999999999999999999999888988
Q ss_pred hHHhh
Q 000351 836 LMENA 840 (1623)
Q Consensus 836 ~~~~~ 840 (1623)
+...+
T Consensus 566 l~~~~ 570 (585)
T TIGR01192 566 LLRRS 570 (585)
T ss_pred HHHhC
Confidence 87644
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=638.29 Aligned_cols=435 Identities=21% Similarity=0.324 Sum_probs=327.6
Q ss_pred EEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------CcEE
Q 000351 617 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------GTVA 682 (1623)
Q Consensus 617 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------------~~ia 682 (1623)
++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++| .+.+. ..++
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSG-SILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCEECCCCCHHHHHhCCEE
Confidence 3688999963 5799999999999999999999999999999999999999998 43322 3599
Q ss_pred EEccCcccC-cccHHHHHhcCCC------CCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 683 YVPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 683 y~~Q~~~l~-~~Tv~enI~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
|++|++.++ +.||+||+.++.. .+.+ +..++++.+++.. .......+|||||||||+|
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~l 145 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEI 145 (491)
T ss_pred EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHH
Confidence 999999875 6799999987631 1222 2223333333321 1233456899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
||||+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|++++.|+.+++...
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~- 224 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD- 224 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-
Confidence 99999999999999999999999999998866554446899999999999886 5899999999999877654321000
Q ss_pred hhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHHHHHHHH
Q 000351 831 ELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKD 910 (1623)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 910 (1623)
+ ...
T Consensus 225 --------------------------------------------------------------~--------------~~~ 228 (491)
T PRK10982 225 --------------------------------------------------------------K--------------IIA 228 (491)
T ss_pred --------------------------------------------------------------H--------------HHH
Confidence 0 000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 911 ALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 990 (1623)
Q Consensus 911 ~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh 990 (1623)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 991 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAA 1070 (1623)
Q Consensus 991 ~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 1070 (1623)
++
T Consensus 229 -------------------------~~----------------------------------------------------- 230 (491)
T PRK10982 229 -------------------------MM----------------------------------------------------- 230 (491)
T ss_pred -------------------------HH-----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1071 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL 1150 (1623)
Q Consensus 1071 ~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 1150 (1623)
+
T Consensus 231 ---~---------------------------------------------------------------------------- 231 (491)
T PRK10982 231 ---V---------------------------------------------------------------------------- 231 (491)
T ss_pred ---h----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCC
Q 000351 1151 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 1230 (1623)
Q Consensus 1151 ~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~ 1230 (1623)
+. . . .+ ..+.+. .+
T Consensus 232 -------------~~-~-----~----------------------------------~~-----~~~~~~-------~~- 245 (491)
T PRK10982 232 -------------GR-S-----L----------------------------------TQ-----RFPDKE-------NK- 245 (491)
T ss_pred -------------CC-C-----c----------------------------------cc-----cccccc-------CC-
Confidence 00 0 0 00 000000 00
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH
Q 000351 1231 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 1310 (1623)
Q Consensus 1231 ~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~ 1310 (1623)
+.+..|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+..
T Consensus 246 ---~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 246 ---PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAN 318 (491)
T ss_pred ---CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHH
Confidence 011248999999975 2599999999999999999999999999999999999999999999999999876654
Q ss_pred H-hhhceEEEcCCCc---ccc-ccHHhh-----cCCCCC----CCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCC
Q 000351 1311 D-LRKILGIIPQSPV---LFS-GTVRFN-----LDPFSE----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGEN 1375 (1623)
Q Consensus 1311 ~-lR~~i~~vpQdp~---Lf~-gTIr~N-----Ld~~~~----~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~ 1375 (1623)
. +|+.++|+||++. +|. .|+++| +..+.. .+..+.. ....++++.+ |+. ........+
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~ 391 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGS 391 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCccccccc
Confidence 3 5677999999963 565 377666 321111 1111111 1123344443 331 123444567
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1376 LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++.
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998754 57999999999999976 99999999999998
Q ss_pred ecChhHH
Q 000351 1454 YDTPEEL 1460 (1623)
Q Consensus 1454 ~Gtp~eL 1460 (1623)
.++++++
T Consensus 472 ~~~~~~~ 478 (491)
T PRK10982 472 IVDTKTT 478 (491)
T ss_pred EEccccC
Confidence 8877543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=643.06 Aligned_cols=200 Identities=22% Similarity=0.357 Sum_probs=165.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCC--cccc-ccHHhhcCCC-CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1318 IIPQSP--VLFS-GTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1318 ~vpQdp--~Lf~-gTIr~NLd~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
|+||++ .+.. .|+.+++... ....++++.+.|+..++.. ..+......||||||||++||||++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 999985 3443 3787776321 1222344555555544321 123334457999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEe-eecChhHHhh
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 1462 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~Gtp~eLl~ 1462 (1623)
|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999985 4599999999999987 9999999999998 6799999853
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=638.76 Aligned_cols=438 Identities=25% Similarity=0.339 Sum_probs=330.8
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
.|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.. ... ..
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHHHHHHH
Confidence 4899999999963 469999999999999999999999999999999999999999843 321 23
Q ss_pred EEEEccCccc---------CcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 681 VAYVPQVSWI---------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 681 iay~~Q~~~l---------~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
++|++|++.+ +..|+++|+.++.. +.++..+.++..++.+..+.. ..+|||||||||+|
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 146 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLL 146 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHH
Confidence 8999998753 14699999876521 234566777777775444333 35899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|||++.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++. .||+|++|++|+++..|+++++....
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 99999999999999999999999999999876554445899999999999876 48999999999999888766543110
Q ss_pred hhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHHHHHHHH
Q 000351 831 ELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKD 910 (1623)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 910 (1623)
. ...
T Consensus 227 ~-~~~--------------------------------------------------------------------------- 230 (490)
T PRK10938 227 L-VAQ--------------------------------------------------------------------------- 230 (490)
T ss_pred h-hhh---------------------------------------------------------------------------
Confidence 0 000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 911 ALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 990 (1623)
Q Consensus 911 ~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh 990 (1623)
..+
T Consensus 231 -~~~---------------------------------------------------------------------------- 233 (490)
T PRK10938 231 -LAH---------------------------------------------------------------------------- 233 (490)
T ss_pred -hhh----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 991 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAA 1070 (1623)
Q Consensus 991 ~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 1070 (1623)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1071 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL 1150 (1623)
Q Consensus 1071 ~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 1150 (1623)
.+. +.+
T Consensus 234 -------~~~-------------------~~~------------------------------------------------ 239 (490)
T PRK10938 234 -------SEQ-------------------LEG------------------------------------------------ 239 (490)
T ss_pred -------hhc-------------------cCc------------------------------------------------
Confidence 000 000
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCccccCCCC
Q 000351 1151 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE-APLVIESNRP 1229 (1623)
Q Consensus 1151 ~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e-~~~~~~~~~~ 1229 (1623)
. +.+.. .+.. ... .
T Consensus 240 ---------------~------------------------------------------------~~~~~~~~~~-~~~-~ 254 (490)
T PRK10938 240 ---------------V------------------------------------------------QLPEPDEPSA-RHA-L 254 (490)
T ss_pred ---------------c------------------------------------------------ccCccccccc-ccc-c
Confidence 0 00000 0000 000 0
Q ss_pred CCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-CCcEEEECCEecCC-C
Q 000351 1230 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK-F 1307 (1623)
Q Consensus 1230 ~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-~~G~I~IdG~di~~-i 1307 (1623)
+ .....|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|.|+.+| ++|+|.++|.++.. .
T Consensus 255 ~---~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 255 P---ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred C---CCCceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCC
Confidence 0 011249999999999643 699999999999999999999999999999999998875 69999999987632 2
Q ss_pred ChHHhhhceEEEcCCCcccc---ccHHhhcCC--CC------CCCH---HHHHHHHHHhcHHHHHHhccCCcch-hhhcC
Q 000351 1308 GLMDLRKILGIIPQSPVLFS---GTVRFNLDP--FS------EHSD---ADLWEALERAHLKDAIRRNSLGLDA-QVSEA 1372 (1623)
Q Consensus 1308 ~~~~lR~~i~~vpQdp~Lf~---gTIr~NLd~--~~------~~sd---~~i~~aL~~~~l~~~i~~lp~gLdt-~v~e~ 1372 (1623)
+....|++++|+||++.++. .|+++++.. +. ...+ +++.++++..++ +. .....
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~ 398 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGI-----------DKRTADAP 398 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC-----------chhhccCc
Confidence 33456788999999986642 367777642 11 1111 234444444443 33 33344
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhc--cCEEEEEeC
Q 000351 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID--CDRILLLDS 1448 (1623)
Q Consensus 1373 G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~-~-~TvI~IaHrl~ti~~--~DrI~Vl~~ 1448 (1623)
...||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ + .|||+|||+++.+.. ||+|++|++
T Consensus 399 ~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 399 FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD 478 (490)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecC
Confidence 467999999999999999999999999999999999999999999998753 4 479999999999975 799999999
Q ss_pred ceEeeec
Q 000351 1449 GRVLEYD 1455 (1623)
Q Consensus 1449 G~ive~G 1455 (1623)
|+|++.-
T Consensus 479 G~i~~~~ 485 (490)
T PRK10938 479 GDIYRYV 485 (490)
T ss_pred CceEEee
Confidence 9998763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=634.87 Aligned_cols=200 Identities=24% Similarity=0.298 Sum_probs=164.1
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
..|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .+|
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 359999999999643 699999999999999999999999999999999999999999999964 2 169
Q ss_pred EEEcCCC-ccccc-cHHhhcCCCCC---C--CHHHHHHHHHHhcHHHHHHhccCCcch-hhhcCCCCCChhHHHHHHHHH
Q 000351 1317 GIIPQSP-VLFSG-TVRFNLDPFSE---H--SDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1317 ~~vpQdp-~Lf~g-TIr~NLd~~~~---~--sd~~i~~aL~~~~l~~~i~~lp~gLdt-~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+|+||++ .++.. |+++|+..... . .+.+..++++.. |+.. ........||||||||++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF-----------NFKGGDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhC-----------CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 56654 99999964211 1 122233334443 3322 233445679999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeC-ceEee-ecChhHHhh
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-GRVLE-YDTPEELLS 1462 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-G~ive-~Gtp~eLl~ 1462 (1623)
|++.+|+||||||||++||+.+.+.+.+.|++. . .|||+|||+++.+.. ||+|++|++ |++.+ .|+++++++
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999999999985 3 499999999999877 999999996 88875 577777654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=566.80 Aligned_cols=541 Identities=23% Similarity=0.327 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 292 LRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPA--WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVG 369 (1623)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 369 (1623)
++..++ .++.++.+++..++..+....--++=+++|..-.-.... ..-+.-+.+.=...++.++....-...+....
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333344 666777777766655544444333334444322111110 11111111111223334444333333456778
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHH
Q 000351 370 FRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVL--LYNELGVASLLGA 447 (1623)
Q Consensus 370 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~l--L~~~lg~~~l~g~ 447 (1623)
+++-+.++..+|+|....++.....+..|+++|++..|||.+++.+......+...+.+++++.+ -+.-++.+.++++
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999887776666655544443333 3555566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 448 LLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNS 527 (1623)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~ 527 (1623)
.++++.+.++..+.++.++..++..+.+..-.+.+.|.+.|...++++|.++.+.+.+...-+...+..++...+..+..
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888888888888899999999999999999999999988877777777777777777777
Q ss_pred HHHHHHHHHHHH-HHHHHHH-HhCCCcC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 000351 528 FILNSIPVLVTV-VSFGMFT-LLGGDLT-PARAFTSLSLFAVLRFPLFM-LPNMITQVVNANVSLKRMEEFLLAEEKILL 603 (1623)
Q Consensus 528 ~~~~~~~~~~~~-~~f~~~~-~~~~~lt-~~~~ft~l~l~~~l~~pl~~-l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~ 603 (1623)
++..++..++.+ ..++.-. .-.|..+ +..+...+..|..+. ++.. .|.++....+...|.+|+.+.+.+++....
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~e-af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~ 325 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALE-AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF 325 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHH-HHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC
Confidence 766655444333 2222211 1123344 333333344344333 3322 237888999999999999999988776444
Q ss_pred CCCCCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC----
Q 000351 604 PNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG---- 679 (1623)
Q Consensus 604 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~---- 679 (1623)
+.+........++++|++|+|+++ +.++|+|+||++++||+++|+|++|||||||++.|.|.++|++| .+..++
T Consensus 326 ~~~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G-~i~~~g~~~~ 403 (573)
T COG4987 326 PDEQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG-SITLNGVEIA 403 (573)
T ss_pred CccccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCC-eeeECCcChh
Confidence 322122222379999999999864 56899999999999999999999999999999999999999999 544333
Q ss_pred ---------cEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 680 ---------TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 680 ---------~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
.|++++|.+++|++|+|||+.++++ .++|+..++++.++|++.++..|+|.+|.+||+|..||||||||+
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 6999999999999999999999976 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
+|||+|++|++++||||||.|||+.|++++.+.++. ..+|||+|+|||++..++.+|+|++|++|+|+++|+|++++.+
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 999999999999999999999999999999986654 5679999999999999999999999999999999999999999
Q ss_pred ChhHHHhH
Q 000351 830 GELFQKLM 837 (1623)
Q Consensus 830 ~~~~~~~~ 837 (1623)
++.|.++.
T Consensus 563 ~g~~~~l~ 570 (573)
T COG4987 563 NGRYKRLY 570 (573)
T ss_pred ccHHHHHh
Confidence 89888775
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-63 Score=632.21 Aligned_cols=476 Identities=24% Similarity=0.280 Sum_probs=329.5
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--CcEEEEccCcccC
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVSWIF 691 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--~~iay~~Q~~~l~ 691 (1623)
.++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+. ..|||++|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG-EARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCCCEEEEEeccCCCC
Confidence 5899999999962 35799999999999999999999999999999999999999999 55443 4699999999987
Q ss_pred -cccHHHHHhcCCC-------------------CCH--------HHHHHHHHHhCchh-------HHhcCCCCCcccccC
Q 000351 692 -NATVRDNILFGSA-------------------FEP--------ARYEKAIDVTSLQH-------DLDLLPGGDVTEIGE 736 (1623)
Q Consensus 692 -~~Tv~enI~~g~~-------------------~~~--------~~~~~~~~~~~l~~-------~~~~l~~g~~t~ig~ 736 (1623)
+.|++|||.++.. .++ .++.++++.++..+ -++.+.- .....
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---~~~~~ 157 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC---PPWDA 157 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC---CcccC
Confidence 5799999987521 010 12333344444321 1222211 11244
Q ss_pred CCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000351 737 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEG 815 (1623)
Q Consensus 737 ~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G 815 (1623)
...+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.. . ++|+|+|||+++++.. ||+|++|++|
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 5678999999999999999999999999999999999999999886543 2 3699999999999875 7999999999
Q ss_pred EEE-EecChhHHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhh
Q 000351 816 MVK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE 894 (1623)
Q Consensus 816 ~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 894 (1623)
+++ ..|+++++.+..... .. . ..
T Consensus 235 ~i~~~~g~~~~~~~~~~~~---~~------~-----------------------------------------------~~ 258 (552)
T TIGR03719 235 RGIPWEGNYSSWLEQKEKR---LE------Q-----------------------------------------------EE 258 (552)
T ss_pred EEEEecCCHHHHHHHHHHH---HH------H-----------------------------------------------HH
Confidence 976 678888765321000 00 0 00
Q ss_pred hhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 000351 895 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLAN 974 (1623)
Q Consensus 895 ~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~ 974 (1623)
..+..+-
T Consensus 259 --------~~~~~~~----------------------------------------------------------------- 265 (552)
T TIGR03719 259 --------KEESARQ----------------------------------------------------------------- 265 (552)
T ss_pred --------HHHHHHH-----------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 000351 975 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 1054 (1623)
Q Consensus 975 ~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1623)
T Consensus 266 -------------------------------------------------------------------------------- 265 (552)
T TIGR03719 266 -------------------------------------------------------------------------------- 265 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1055 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSI-TRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 1133 (1623)
Q Consensus 1055 ~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~-~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~ 1133 (1623)
+++++.... .+.+... ++ ..+
T Consensus 266 ------------------------~~~~~~~~~~~~~~~~~------------~~-~~~--------------------- 287 (552)
T TIGR03719 266 ------------------------KALKRELEWVRSSPKAR------------QA-KSK--------------------- 287 (552)
T ss_pred ------------------------HHHHHHHHHHHhhhhhH------------HH-HHH---------------------
Confidence 000000000 0000000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000351 1134 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 1213 (1623)
Q Consensus 1134 ~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~ 1213 (1623)
......++..+
T Consensus 288 --------------------------------------------------------------------~~~~~~~~~~~- 298 (552)
T TIGR03719 288 --------------------------------------------------------------------ARLARYEELLS- 298 (552)
T ss_pred --------------------------------------------------------------------HHHHHHHhhhh-
Confidence 00000011110
Q ss_pred hcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC
Q 000351 1214 IELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 1293 (1623)
Q Consensus 1214 ~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~ 1293 (1623)
..+...+.......+...-+.+..|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|+
T Consensus 299 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 375 (552)
T TIGR03719 299 -QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD 375 (552)
T ss_pred -hcccccCCCceeecCCCCCCCCeEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 0000000000000000000112359999999999643 6999999999999999999999999999999999999999
Q ss_pred CcEEEECCEecCCCChHHhhhceEEEcCCCc-ccc-ccHHhhcCCCCC---CC--HHHHHHHHHHhcHHHHHHhccCCcc
Q 000351 1294 RGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE---HS--DADLWEALERAHLKDAIRRNSLGLD 1366 (1623)
Q Consensus 1294 ~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~-Lf~-gTIr~NLd~~~~---~s--d~~i~~aL~~~~l~~~i~~lp~gLd 1366 (1623)
+|+|.+++ + .+|+|+||++. ++. .|+++|+..... .. +.+..++++.. |++
T Consensus 376 ~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~ 433 (552)
T TIGR03719 376 SGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRF-----------NFK 433 (552)
T ss_pred CeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhC-----------CCC
Confidence 99999964 2 16999999973 665 499999964221 11 22233333333 343
Q ss_pred h-hhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEE
Q 000351 1367 A-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL 1444 (1623)
Q Consensus 1367 t-~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~ 1444 (1623)
. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++. . +|||+|||+++.+.. ||+|+
T Consensus 434 ~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~ 511 (552)
T TIGR03719 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHIL 511 (552)
T ss_pred hhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEE
Confidence 2 233445679999999999999999999999999999999999999999999986 3 599999999999987 99999
Q ss_pred EEeC-ceEeee-cChhHHh
Q 000351 1445 LLDS-GRVLEY-DTPEELL 1461 (1623)
Q Consensus 1445 Vl~~-G~ive~-Gtp~eLl 1461 (1623)
+|++ |+++++ |+++++.
T Consensus 512 ~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 512 AFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred EEECCCeEEEeCCCHHHHH
Confidence 9996 688754 6665554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=613.84 Aligned_cols=510 Identities=21% Similarity=0.262 Sum_probs=407.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 300 GGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQ-QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVA 378 (1623)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~ 378 (1623)
++.++..+++.++..++..+.|++++.+++.+. .......-+.+++.++++.++..++.....+...+++.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999874 3222122223344444455556666666667778889999999999
Q ss_pred HHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000351 379 AVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQ 457 (1623)
Q Consensus 379 ~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~~~~~ 457 (1623)
.+|+|.++++.....+.++|++++++++|++.+++.+. .+..++...+.+++++++++....+.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999998664 45566666655555555555444444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 458 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV 537 (1623)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~~~ 537 (1623)
.++.++..+..++..+..+++.+.+.|.++|+++||.|+.|+.+.+++++..++..+...+..........+......+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888999999999999999999999999999999999887766655554444443443333333322222
Q ss_pred HH--HHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcE
Q 000351 538 TV--VSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 615 (1623)
Q Consensus 538 ~~--~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i 615 (1623)
.+ +.++.+.+..+.+|++.+++++.+...+..|+..+...+..+.++.++++||.++++.++......+........|
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i 321 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSL 321 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeE
Confidence 21 2234444457889999999999999999999999999999999999999999999975432111111111112469
Q ss_pred EEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------CcEE
Q 000351 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTVA 682 (1623)
Q Consensus 616 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ia 682 (1623)
+++|++|+|+++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+. +.|+
T Consensus 322 ~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 322 EFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG-SIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred EEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEehhhCCHHHHHhheE
Confidence 999999999753 35899999999999999999999999999999999999999998 44432 3599
Q ss_pred EEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000351 683 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1623)
Q Consensus 683 y~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~i 761 (1623)
||+|+|++|++||+|||.++.+ .++++..++++.+++.++++.+|+|.+|.+||+|.+||||||||++||||++++|++
T Consensus 400 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i 479 (529)
T TIGR02857 400 WVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL 479 (529)
T ss_pred EEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000351 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 812 (1623)
Q Consensus 762 llLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 812 (1623)
+|||||||+||+++++.+++.+.. ..+++|+|+|||+++.+..||+|++|
T Consensus 480 lilDE~ts~lD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 480 LLLDEPTAHLDAETEALVTEALRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEEeCcccccCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999886654 45789999999999999999999975
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=631.74 Aligned_cols=200 Identities=22% Similarity=0.345 Sum_probs=164.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 48999999999643 6999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEcCCC-ccccc-cHHhhcCCCC-CC--C--HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1318 IIPQSP-VLFSG-TVRFNLDPFS-EH--S--DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1318 ~vpQdp-~Lf~g-TIr~NLd~~~-~~--s--d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
|++|++ .+++. ||++|+.... .. . +.++.+.++..++. ..........||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH----------PKRAMTPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC----------HHHHhChhhhCCHHHHHHHHHHHHH
Confidence 999986 46654 9999996421 11 1 22333444433331 1123334457999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEe-CceEeee-cChhHHhh
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-SGRVLEY-DTPEELLS 1462 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-~G~ive~-Gtp~eLl~ 1462 (1623)
+.+|++|||||||++||+.+.+.+.+.|++. ++|||+|||+++.+.. ||+|++|+ +|+|.++ |++++++.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999999874 5699999999999976 99999998 8999886 88888754
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=552.24 Aligned_cols=452 Identities=28% Similarity=0.474 Sum_probs=347.0
Q ss_pred CcEEEEeeEEEcCCC-CCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCC-----CCCeEE----------
Q 000351 613 PAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV---------- 676 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~~---------- 676 (1623)
+.++++|++..|... ....++++|||+|++||.+++||.+|||||-..++++|+++.. +| .+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg-~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc-eeEEcChhhhcCC
Confidence 568999998888632 3467999999999999999999999999999999999999752 22 222
Q ss_pred ------Ec-CcEEEEccCccc-Cc--ccHHHHH----hcCCCCC----HHHHHHHHHHhCchhH---HhcCCCCCccccc
Q 000351 677 ------IR-GTVAYVPQVSWI-FN--ATVRDNI----LFGSAFE----PARYEKAIDVTSLQHD---LDLLPGGDVTEIG 735 (1623)
Q Consensus 677 ------~~-~~iay~~Q~~~l-~~--~Tv~enI----~~g~~~~----~~~~~~~~~~~~l~~~---~~~l~~g~~t~ig 735 (1623)
++ .+|+.++|+|.- .| -||...| ......+ .++..+.++..++.+- ++..|
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP-------- 155 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-------- 155 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC--------
Confidence 22 369999999974 33 2555544 3333322 2344455666666542 33444
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhh-cCEEEEEe
Q 000351 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVH 813 (1623)
Q Consensus 736 ~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~ 813 (1623)
..|||||||||-||.||..+||+||-||||.|||..+..+|.+.+.... ..|..+++||||+..+.. ||+|+||.
T Consensus 156 ---HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~ 232 (534)
T COG4172 156 ---HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232 (534)
T ss_pred ---cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe
Confidence 5899999999999999999999999999999999999999998554432 238999999999999875 89999999
Q ss_pred CCEEEEecChhHHhhcCh-hHH-HhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhh
Q 000351 814 EGMVKEEGTFEDLSNNGE-LFQ-KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIK 891 (1623)
Q Consensus 814 ~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1623)
+|+++|+|+.+++..... .|. .+..
T Consensus 233 ~G~ivE~~~t~~lF~~PqHpYTr~Ll~----------------------------------------------------- 259 (534)
T COG4172 233 HGEIVETGTTETLFAAPQHPYTRKLLA----------------------------------------------------- 259 (534)
T ss_pred ccEEeecCcHHHHhhCCCChHHHHHHh-----------------------------------------------------
Confidence 999999998877754321 010 0000
Q ss_pred HhhhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHH
Q 000351 892 QEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVT 971 (1623)
Q Consensus 892 ~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~ 971 (1623)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHH
Q 000351 972 LANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 1051 (1623)
Q Consensus 972 ~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1623)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000351 1052 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTL 1131 (1623)
Q Consensus 1052 ~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~ 1131 (1623)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1132 VNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1211 (1623)
Q Consensus 1132 ~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~ 1211 (1623)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCcccceeeEeCCCCEEEEecCCCCChhhH
Q 000351 1212 NYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 1282 (1623)
Q Consensus 1212 ~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~---------~~~~vL~~isl~I~~GekvgIvGrsGSGKSTL 1282 (1623)
..|... .+|..-...--++.+||...|+- +.-.++++|||++++||.+||||+||||||||
T Consensus 260 ---aeP~g~-------~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTl 329 (534)
T COG4172 260 ---AEPSGD-------PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTL 329 (534)
T ss_pred ---cCCCCC-------CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchH
Confidence 001000 00000001123667777777631 11258999999999999999999999999999
Q ss_pred HHHhhccccCCCcEEEECCEecCCCChHH---hhhceEEEcCCCc--ccc-ccHHhhcC----CCC-C----CCHHHHHH
Q 000351 1283 LNTLFRIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSPV--LFS-GTVRFNLD----PFS-E----HSDADLWE 1347 (1623)
Q Consensus 1283 l~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR~~i~~vpQdp~--Lf~-gTIr~NLd----~~~-~----~sd~~i~~ 1347 (1623)
-++|+|+++++ |+|.++|.||...+.++ +|+++-+|+|||+ |-+ .||.+-+. -.. . .-|+.+.+
T Consensus 330 G~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~ 408 (534)
T COG4172 330 GLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIE 408 (534)
T ss_pred HHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHH
Confidence 99999999876 99999999999988776 5889999999997 222 26555432 111 1 23566889
Q ss_pred HHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCc
Q 000351 1348 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSC 1425 (1623)
Q Consensus 1348 aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~ 1425 (1623)
||+.+|++.-... .-...+|||||||+|||||++-+|++++||||||+||..-.+.|.+.+++.- .+-
T Consensus 409 aL~EVGLDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L 478 (534)
T COG4172 409 ALEEVGLDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL 478 (534)
T ss_pred HHHHcCCChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999888653322 2235799999999999999999999999999999999999999999999865 367
Q ss_pred EEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHHH
Q 000351 1426 TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1426 TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~ 1470 (1623)
+-++|+|+|..++. ||+|+||.+|+|||+|+.+++.+++...|.+
T Consensus 479 sYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 479 SYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred eEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 99999999999988 9999999999999999999999998776654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=599.26 Aligned_cols=483 Identities=25% Similarity=0.334 Sum_probs=341.0
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC--cEEEEccCcccC
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVPQVSWIF 691 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~--~iay~~Q~~~l~ 691 (1623)
.|.++|++++|+ ++++|+|+||++.+|+++||||+|||||||||++|+|+..|++| .+...+ +|||++|++...
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G-~i~~~~~~~v~~l~Q~~~~~ 78 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG-EVTRPKGLRVGYLSQEPPLD 78 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCC-eEeecCCceEEEeCCCCCcC
Confidence 589999999995 47899999999999999999999999999999999999999999 554444 799999999997
Q ss_pred -cccHHHHHhcCCCCC---HHHHHHHHH---------------------H----hCchhHHhcCCCCCcccccCCCCccC
Q 000351 692 -NATVRDNILFGSAFE---PARYEKAID---------------------V----TSLQHDLDLLPGGDVTEIGERGVNIS 742 (1623)
Q Consensus 692 -~~Tv~enI~~g~~~~---~~~~~~~~~---------------------~----~~l~~~~~~l~~g~~t~ig~~g~~LS 742 (1623)
+.||++.+.-+...- ..+++.... . ......+..+.-.+ ......+||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~---~~~~~~~LS 155 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD---EDRPVSSLS 155 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc---ccCchhhcC
Confidence 569999998763210 011111110 0 00111111121111 133456899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEE-Ee
Q 000351 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EE 820 (1623)
Q Consensus 743 GGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~ 820 (1623)
||||.||+|||||..+||+|||||||||||.++.+|+.+.+.. .+| |+|+||||++||+. |++|+.+++|++. +.
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~--~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYK 232 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEec
Confidence 9999999999999999999999999999999999999987753 356 99999999999997 6999999999765 57
Q ss_pred cChhHHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccc
Q 000351 821 GTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVV 900 (1623)
Q Consensus 821 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v 900 (1623)
|+|+...+....-......
T Consensus 233 Gny~~~~~~r~~~~~~~~~------------------------------------------------------------- 251 (530)
T COG0488 233 GNYSSYLEQKAERLRQEAA------------------------------------------------------------- 251 (530)
T ss_pred CCHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 7777665332110000000
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 901 SFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLII 980 (1623)
Q Consensus 901 ~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~ 980 (1623)
.|
T Consensus 252 ------~~------------------------------------------------------------------------ 253 (530)
T COG0488 252 ------AY------------------------------------------------------------------------ 253 (530)
T ss_pred ------HH------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 000351 981 SSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAI 1060 (1623)
Q Consensus 981 ~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1623)
T Consensus 254 -------------------------------------------------------------------------------- 253 (530)
T COG0488 254 -------------------------------------------------------------------------------- 253 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1061 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140 (1623)
Q Consensus 1061 ~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1140 (1623)
.+...++++ ..++ .+++.....
T Consensus 254 --------------~~~~~~~~~------------~~~~----------------i~r~~~~~~---------------- 275 (530)
T COG0488 254 --------------EKQQKELAK------------EQEW----------------IRRGKAAAS---------------- 275 (530)
T ss_pred --------------HHHHHHHHH------------HHHH----------------HHHHHhccc----------------
Confidence 000000000 0000 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC
Q 000351 1141 AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY--IELPS 1218 (1623)
Q Consensus 1141 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~--~~~~~ 1218 (1623)
.....+......+++.+. ...|.
T Consensus 276 -------------------------------------------------------~~k~a~sr~k~l~k~~~~~~~~~~~ 300 (530)
T COG0488 276 -------------------------------------------------------KAKKAKSRIKRLEKLEARLAEERPV 300 (530)
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHHHHhhhhhcccc
Confidence 000011111222333211 11111
Q ss_pred CCCccccCCCCCCC-CCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEE
Q 000351 1219 EAPLVIESNRPPPG-WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297 (1623)
Q Consensus 1219 e~~~~~~~~~~~~~-wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I 1297 (1623)
.......-..+++. -..+-.++++|++++|.++ +++++++||.|.+|++||||||||+|||||+++|.|...|.+|+|
T Consensus 301 ~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v 379 (530)
T COG0488 301 EEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379 (530)
T ss_pred cccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence 11000000011111 1223468999999999655 579999999999999999999999999999999999999999999
Q ss_pred EECCEecCCCChHHhhhceEEEcCCC-cccc-ccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCC
Q 000351 1298 LIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 1374 (1623)
Q Consensus 1298 ~IdG~di~~i~~~~lR~~i~~vpQdp-~Lf~-gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~ 1374 (1623)
.++-. -++||.+|+- .++. .|+-+++.... +..+.++...|.+.++..-- +.....
T Consensus 380 ~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~----------~~~~v~ 438 (530)
T COG0488 380 KVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVG 438 (530)
T ss_pred EeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH----------HhCchh
Confidence 88721 3699999998 3443 38888886544 33467788888776654321 122335
Q ss_pred CCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1375 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1375 ~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
.||||||-|+.||+.++.+|++|||||||++||.+|.+.+.++|.+ .+.|||+|||+.+.+.. |++|+++++ ++.+
T Consensus 439 ~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~ 515 (530)
T COG0488 439 VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEE 515 (530)
T ss_pred hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeE
Confidence 6999999999999999999999999999999999999999999988 36799999999999998 999999999 8888
Q ss_pred e-cChhHHhhc
Q 000351 1454 Y-DTPEELLSN 1463 (1623)
Q Consensus 1454 ~-Gtp~eLl~~ 1463 (1623)
+ |+++++.+.
T Consensus 516 ~~g~y~~y~~~ 526 (530)
T COG0488 516 FEGGYEDYLEQ 526 (530)
T ss_pred cCCCHHHHHHh
Confidence 8 888888754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-60 Score=553.99 Aligned_cols=531 Identities=23% Similarity=0.299 Sum_probs=418.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 304 WWGGFWKIGNDLSQFVGPLLLNQLLQSMQQD--GP--AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAA 379 (1623)
Q Consensus 304 ~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~--~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~ 379 (1623)
+.+..+.+..-.+...+|++++.+++.+.+. .+ .......+.+++++.++.+++.-...+....+..++-......
T Consensus 33 ~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 33 FPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555678889999999999998632 22 1112334444455555555555444444555666666677788
Q ss_pred HHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH
Q 000351 380 VFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLL-VFMFPVQ 457 (1623)
Q Consensus 380 i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~-~~~~~~~ 457 (1623)
+|++.+.++.....+..+|++.+.|..-...|..++. .+..+....+++.+....+++..|++..+..+.. .....+.
T Consensus 113 vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T 192 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT 192 (591)
T ss_pred HHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE
Confidence 9999999999999999999999999999999988764 5567788888999999999999998755544443 3444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 000351 458 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PV 535 (1623)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~--~~ 535 (1623)
..+...-.+.+++.+++.++-.+.+-|.|.+..+||.|+-|+...++....-.+.-+...+.....++.++....+ ..
T Consensus 193 i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~ 272 (591)
T KOG0057|consen 193 IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVA 272 (591)
T ss_pred EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHH
Confidence 5666667778889999999999999999999999999999999888876644443333333222223333322221 11
Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcE
Q 000351 536 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 615 (1623)
Q Consensus 536 ~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i 615 (1623)
.+.+...+..-+..+.+|.+......+++..|..|+..+...+..+.++..-+.-.......++.......+....+..|
T Consensus 273 ~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I 352 (591)
T KOG0057|consen 273 LTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSI 352 (591)
T ss_pred HHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcE
Confidence 12222223333456789999999999999999999999999999999998888776554443332222111222233469
Q ss_pred EEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCcEE
Q 000351 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVA 682 (1623)
Q Consensus 616 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ia 682 (1623)
+|+|++|+|++ ++++|+++||+|++||++||||+|||||||++++|++.++ ++| .+.+ |+.||
T Consensus 353 ~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG-~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 353 EFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG-SILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC-cEEECCeeHhhhChHHhhhhee
Confidence 99999999985 5679999999999999999999999999999999999999 788 4433 45699
Q ss_pred EEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000351 683 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1623)
Q Consensus 683 y~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~i 761 (1623)
||||+..|||+||.+||.+|++ ..+++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+++||+|
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 9999999999999999999986 467888899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHh
Q 000351 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 839 (1623)
Q Consensus 762 llLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 839 (1623)
+++|||||+||.+|++.|++.+.+ ...|||+|+|.||++.++.+|+|+++++|++.+.|+|+|++..++.|.+++..
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 999999999999999999997665 67899999999999999999999999999999999999999988888877653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=647.21 Aligned_cols=545 Identities=18% Similarity=0.228 Sum_probs=409.6
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 290 WLLRALNSSLGGRFW-WGGFWKIGNDLSQFVGPLLLNQLLQSMQ-QDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMR 367 (1623)
Q Consensus 290 ~L~~al~~~~~~~~~-~~~~~~l~~~~~~~~~P~ll~~li~~l~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (1623)
+.++..+++.++..+ ..+++.++..++....|+.++...+.-. +.......+.+ +.+++..++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL-SVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555543332 2333344555667778888876664321 11111111111 12222222222222222333445
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000351 368 VGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLG 446 (1623)
Q Consensus 368 ~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g 446 (1623)
.+.+.-..+...+|++.++.+...+++.++|+++|++++|++.+++.+. .+..+...++.++.++++++....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888899999999999999999999999999999999998664 455666666666666665554444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 447 ALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACN 526 (1623)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~ 526 (1623)
+.++++.+.+..+..+..+..++...+.++...+.++|.++|+++||.|++|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555666666666777888899999999999999999999999888777766655544333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC--
Q 000351 527 SFILNSIPVLVTVVSFGMFTL-LGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-- 603 (1623)
Q Consensus 527 ~~~~~~~~~~~~~~~f~~~~~-~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~-- 603 (1623)
......+..++ ++..+.+.+ ..+.++++.+..++.+...+..|+..+...+..+..+.+|.+||.++++.+++...
T Consensus 1192 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 33333222222 122223333 34679999999999999999999999999999999999999999999976543211
Q ss_pred -C-CCCC-CCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---
Q 000351 604 -P-NPPL-TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--- 677 (1623)
Q Consensus 604 -~-~~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--- 677 (1623)
. .++. -+....|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|.++|++| .+.+
T Consensus 1271 ~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G-~I~IdG~ 1348 (1522)
T TIGR00957 1271 QETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG-EIIIDGL 1348 (1522)
T ss_pred cCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC-eEEECCE
Confidence 1 1111 1233569999999999753 35799999999999999999999999999999999999999999 4443
Q ss_pred ----------cCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 678 ----------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 678 ----------~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
|++|+||||+|.+|+|||||||....++++++++++++.|++.+.++.+|+|.+|.+||+|.+|||||||
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 4569999999999999999999833368899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
|++||||++++|+|+|||||||+||++|++.|.+.+ +...+++|+|+||||++.+..+|+|++|++|+|+|.|+|++|+
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l-~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI-RTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999887654 5566899999999999999999999999999999999999999
Q ss_pred hcChhHHHhHHh
Q 000351 828 NNGELFQKLMEN 839 (1623)
Q Consensus 828 ~~~~~~~~~~~~ 839 (1623)
++++.|++++++
T Consensus 1508 ~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1508 QQRGIFYSMAKD 1519 (1522)
T ss_pred hCCCHHHHHHHH
Confidence 888889888765
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=652.30 Aligned_cols=474 Identities=19% Similarity=0.243 Sum_probs=365.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 000351 979 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 1058 (1623)
Q Consensus 979 ~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1623)
...+.+....+...+++++++.|..++++.++|+++||++.|++.++... ..+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56677777788889999999999999999999999999999999998865 33444443333333333322221112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1059 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 1138 (1623)
Q Consensus 1059 ~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 1138 (1623)
+.++++++++.+..++.+..++.++.....+....+.+.|.++|+++||+|++++.+.+++.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333444444455555555566667788899999999999999999999999988877766655444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000351 1139 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 1218 (1623)
Q Consensus 1139 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~ 1218 (1623)
+..+.......++.++..+......+..+ ++.+-.++++...+..++..+...+..+.....+.+|+.++++.++
T Consensus 525 ~~~~~~~~~~~~~~~~~fg~~~v~~~~lt-----~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~ 599 (1495)
T PLN03232 525 FNSFILNSIPVVVTLVSFGVFVLLGGDLT-----PARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEE 599 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 33332222221111111122222344455 5555566667777778888888999999999999999999997654
Q ss_pred CCCccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEE
Q 000351 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297 (1623)
Q Consensus 1219 e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I 1297 (1623)
+... . .+ +..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+
T Consensus 600 ~~~~---~-~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 600 RILA---Q-NP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred cccc---c-cC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 3211 0 11 111234579999999999752 3579999999999999999999999999999999999999999876
Q ss_pred EECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCC
Q 000351 1298 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1377 (1623)
Q Consensus 1298 ~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LS 1377 (1623)
. .+|++|+||||+|.+|+|||||||.+..++++++++++++.|++.+.++.+|+|+||.+||+|.+||
T Consensus 675 ~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS 742 (1495)
T PLN03232 675 V------------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742 (1495)
T ss_pred E------------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence 3 3688999999999999999999999888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecC
Q 000351 1378 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1378 gGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq-~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gt 1456 (1623)
|||||||+||||++++|+|+|||||||+||++|++.|. +.++...+++|+|+||||++++..||+|++|++|+|+|.|+
T Consensus 743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999775 55776678999999999999999999999999999999999
Q ss_pred hhHHhhcCCChHHHHHHHhh
Q 000351 1457 PEELLSNEGSSFSKMVQSTG 1476 (1623)
Q Consensus 1457 p~eLl~~~~~~f~~l~~~~~ 1476 (1623)
|+||+++ ++.|+++++..+
T Consensus 823 ~~eL~~~-~~~~~~l~~~~~ 841 (1495)
T PLN03232 823 FAELSKS-GSLFKKLMENAG 841 (1495)
T ss_pred HHHHHhc-chhHHHHHHhcc
Confidence 9999974 567888876543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-59 Score=596.64 Aligned_cols=471 Identities=16% Similarity=0.136 Sum_probs=353.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHh
Q 000351 964 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLL 1043 (1623)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~ 1043 (1623)
.++..++.++..++....+.+...+++.++++++++.|+.||+++++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333445667778888889999999999999999999999999999999999999999999987554 4556677777777
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHH---HHHHHHHH
Q 000351 1044 STFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY---DRMADING 1120 (1623)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~---~~~~~~~~ 1120 (1623)
..++++++.+|.+.++++.++++.+.+..+..+..+...+...+..+.+.+++.|.++|+.+++ ++.+ +.+.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 8888888888888776666555555555555444444444455667888999999999999995 4432 34556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1121 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQ--NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 1198 (1623)
Q Consensus 1121 ~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~ 1198 (1623)
+..+...+.................++... +++++.+.. .+... .+.++....+...+..++..+...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~pl~~l~~~~~ 287 (547)
T PRK10522 216 PDAQEYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANSLGWAD-----TNVAATYSLTLLFLRTPLLSAVGALP 287 (547)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554443322211111111111111111 111111111 01011 22223333333445578888888888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCC
Q 000351 1199 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 1278 (1623)
Q Consensus 1199 ~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSG 1278 (1623)
.+.....+.+|+.++.+.+.+.+.. ...+. |..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||
T Consensus 288 ~~~~~~~a~~ri~~l~~~~~~~~~~--~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsG 361 (547)
T PRK10522 288 TLLSAQVAFNKLNKLALAPYKAEFP--RPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSG 361 (547)
T ss_pred HHHHHHHHHHHHHHHhccccccccc--ccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCC
Confidence 9999999999999987654432110 11111 123579999999999743 46999999999999999999999999
Q ss_pred hhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHH
Q 000351 1279 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 1358 (1623)
Q Consensus 1279 KSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i 1358 (1623)
||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||||.+|++|+++| ....+|++++++++++++.+.+
T Consensus 362 KSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~ 438 (547)
T PRK10522 362 KSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKL 438 (547)
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhh
Confidence 9999999999999999999999999999999999999999999999999999999 2356788888888888776655
Q ss_pred HhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchh
Q 000351 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT 1436 (1623)
Q Consensus 1359 ~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~t 1436 (1623)
.. ++|. .+|.+||||||||++||||++++|+|||||||||+||+++++.|.+.+.+.. +++|+|+||||+++
T Consensus 439 ~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 439 EL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred hc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 42 3332 1478999999999999999999999999999999999999999999997654 48999999999999
Q ss_pred hhccCEEEEEeCceEeee-cChhH
Q 000351 1437 IIDCDRILLLDSGRVLEY-DTPEE 1459 (1623)
Q Consensus 1437 i~~~DrI~Vl~~G~ive~-Gtp~e 1459 (1623)
+..||+|++|++|+++|. |++.+
T Consensus 513 ~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 513 FIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHhCCEEEEEECCEEEEecCCchh
Confidence 999999999999999988 44433
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=650.66 Aligned_cols=472 Identities=19% Similarity=0.262 Sum_probs=367.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 000351 979 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 1058 (1623)
Q Consensus 979 ~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1623)
...+.+.-..+...+++++++.|..+++..++|+++|+++.|++.++.... .+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788899999999999999999999999999999999998763 3444444444444444333332223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1059 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 1138 (1623)
Q Consensus 1059 ~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 1138 (1623)
+.++++++++.+..++.+..++.++.....+....+.+.|.++|+++||+|++++.+.++..+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555555666677788899999999999999999999999988877665554433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000351 1139 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 1218 (1623)
Q Consensus 1139 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~ 1218 (1623)
+..+.......++.+++.+......+..+ ++.+-.++++...+..++..+......+.....+.+|+.++.+.++
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt-----~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e 599 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLLGGDLT-----PARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEE 599 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 33322222211111122122223345555 5555555666666777888888889999999999999999987544
Q ss_pred CCCccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCC-cE
Q 000351 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GR 1296 (1623)
Q Consensus 1219 e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~-G~ 1296 (1623)
+.+. .. ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+
T Consensus 600 ~~~~---~~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~ 674 (1622)
T PLN03130 600 RVLL---PN-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674 (1622)
T ss_pred cccc---cC-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCce
Confidence 3211 00 11 01223579999999999743 3579999999999999999999999999999999999999999 89
Q ss_pred EEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCC
Q 000351 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376 (1623)
Q Consensus 1297 I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~L 1376 (1623)
|. +|.+|+||||+|.+|+|||||||.++.++++++++++++.|+++++++.+|+|+||.+||+|.+|
T Consensus 675 I~-------------l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L 741 (1622)
T PLN03130 675 VV-------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741 (1622)
T ss_pred EE-------------EcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCC
Confidence 97 46789999999999999999999988888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeec
Q 000351 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1377 SgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~I-q~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G 1455 (1623)
||||||||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|.|
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999877 56777777899999999999999999999999999999999
Q ss_pred ChhHHhhcCCChHHHHHHHh
Q 000351 1456 TPEELLSNEGSSFSKMVQST 1475 (1623)
Q Consensus 1456 tp~eLl~~~~~~f~~l~~~~ 1475 (1623)
+|+||+++ ++.|++++...
T Consensus 822 t~~eL~~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 822 TYEELSNN-GPLFQKLMENA 840 (1622)
T ss_pred CHHHHHhc-chhHHHHHHhc
Confidence 99999964 56788887654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=613.17 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=164.5
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
..|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3699999999999999999999999999999999999999999999875 3479
Q ss_pred EEEcCCCccccccHHhhcC-----CCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhh
Q 000351 1317 GIIPQSPVLFSGTVRFNLD-----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1391 (1623)
Q Consensus 1317 ~~vpQdp~Lf~gTIr~NLd-----~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL 1391 (1623)
+|+||++. ...++.+|.. .+...+++++.++|+..++.+. ........||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 2224444421 1223456667777777665421 122334679999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEe-eecChhHHh
Q 000351 1392 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELL 1461 (1623)
Q Consensus 1392 ~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~Gtp~eLl 1461 (1623)
.+|+||||||||++||+.+.+.+.+.|++. ++|||+|||+++.+.. ||||++|++|+++ ..|+++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999874 3599999999999987 9999999999998 568877753
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-58 Score=533.49 Aligned_cols=530 Identities=22% Similarity=0.305 Sum_probs=440.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 289 PWLLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRV 368 (1623)
Q Consensus 289 ~~L~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (1623)
.....+....++..|+..+++..+-+++.+..|+.+-++.|.+-...+...-..+.+.....+++..++...-.+...|+
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888999999999999999999999999999987655433344555556666777777777777888999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000351 369 GFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQA-----LHTLWSAPFRIIISLVLLYNELGVAS 443 (1623)
Q Consensus 369 ~~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~-----~~~~~~~pl~i~i~~~lL~~~lg~~~ 443 (1623)
+.++-..|...||..+++.+..........+. -.|.+.+..++.. +.+..-.|+.+ ..++++..++|+.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl-~v~fl~Hp~lG~~a 165 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYL-AVIFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999987554433322222233 3688899887642 33333455544 35678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 444 LLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLA 523 (1623)
Q Consensus 444 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~ 523 (1623)
++|.++++++..++-++.+ +-.++..+..-++.......+++..+|+.+|+.+...+++.+.....+....+..-..
T Consensus 166 ~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9998888888777766654 4456667778888999999999999999999999999999999988888776666555
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000351 524 ACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI 601 (1623)
Q Consensus 524 ~~~~~~~~~~~~~--~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~ 601 (1623)
.....+....-++ +.++..|.|+...+++|++.+++.-.+..-...|+......+.++..|+.|.+|++++|...+..
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 5555555444444 34456677888899999999999999999999999999999999999999999999999865433
Q ss_pred cCCCCCCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----
Q 000351 602 LLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---- 677 (1623)
Q Consensus 602 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---- 677 (1623)
.... +.+..+..+.++++++.-| ..++++++||||++++|+-++||||||||||||.++|.|..+|.+| .+.+
T Consensus 323 ~~~m-~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G-~VRLDga~ 399 (580)
T COG4618 323 AERM-PLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG-SVRLDGAD 399 (580)
T ss_pred cCCC-CCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCC-cEEecchh
Confidence 2222 1223345799999999755 4568999999999999999999999999999999999999999999 5443
Q ss_pred ---------cCcEEEEccCcccCcccHHHHHh-cCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 678 ---------RGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 678 ---------~~~iay~~Q~~~l~~~Tv~enI~-~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
.++|||+||+-.||.|||.|||. |+.+.|++++.++.+.++.++-+-.+|+|++|.||+.|.+|||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 34799999999999999999997 88888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
||+||||+|.||.+++||||-|+||.+.+..+.+.+..-..+|.|+|+|||+++.+..+|+|.+|++|++...|+.+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999999999999999999999999999988777777899999999999999999999999999999999999887
Q ss_pred hc
Q 000351 828 NN 829 (1623)
Q Consensus 828 ~~ 829 (1623)
++
T Consensus 560 a~ 561 (580)
T COG4618 560 AK 561 (580)
T ss_pred HH
Confidence 43
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=621.68 Aligned_cols=469 Identities=19% Similarity=0.210 Sum_probs=367.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000351 370 FRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGAL 448 (1623)
Q Consensus 370 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~ 448 (1623)
.+....+...+|++.++.+...+++.+.|+++|++++|++.+++.+. .+..++...+.++.++++++...++..++.+.
T Consensus 1027 ~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~ 1106 (1560)
T PTZ00243 1027 RRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVP 1106 (1560)
T ss_pred HHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677899999999999999999999999999999999999664 45555566666665555554443333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 449 LLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSF 528 (1623)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~ 528 (1623)
++++.+.+..++.+..+..++......+...+.++|.++|+++||.|+.|+.+.++..+.-+...+...+......+...
T Consensus 1107 ~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~ 1186 (1560)
T PTZ00243 1107 CGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGV 1186 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334445555666666666777788899999999999999999999999888876666555443333223333322
Q ss_pred HHHHHHHH--HHHHHHHHHH--HhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC-
Q 000351 529 ILNSIPVL--VTVVSFGMFT--LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL- 603 (1623)
Q Consensus 529 ~~~~~~~~--~~~~~f~~~~--~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~- 603 (1623)
....+..+ +.++.++++. ...+.++++.+..++.+...+..|+..+...+..+..+..|++||.++++..+....
T Consensus 1187 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~ 1266 (1560)
T PTZ00243 1187 RVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMP 1266 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 22222111 1111222222 223457888888888888889999999999999999999999999999963221100
Q ss_pred --------------------------C-CCC----CCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCC
Q 000351 604 --------------------------P-NPP----LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGT 652 (1623)
Q Consensus 604 --------------------------~-~~~----~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~ 652 (1623)
+ .++ ..+....|+++|++|+|+++ .+++|+||||+|++||++||||++
T Consensus 1267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrT 1345 (1560)
T PTZ00243 1267 ELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRT 1345 (1560)
T ss_pred cccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCC
Confidence 0 000 01122469999999999753 356999999999999999999999
Q ss_pred CCChhHHHHHHcCCccCCCCCeEEE-------------cCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCc
Q 000351 653 GEGKTSLISAMLGELPPVSDASAVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL 719 (1623)
Q Consensus 653 GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l 719 (1623)
|||||||+++|+|.++|++| .+.+ ++.|+|+||+|.||++||||||..+.++++++++++++.|++
T Consensus 1346 GSGKSTLl~lLlrl~~p~~G-~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1346 GSGKSTLLLTFMRMVEVCGG-EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCHHHHHHHHhCCCCCCCc-EEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 99999999999999999998 4443 356999999999999999999987777899999999999999
Q ss_pred hhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcC-CCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcC
Q 000351 720 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN-SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 798 (1623)
Q Consensus 720 ~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~-~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH 798 (1623)
.+.+..+|+|.+|.+||+|.+||||||||++|||||+++ |+|+|||||||+||+++++.|.+.+ ....+++|+|+|||
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L-~~~~~~~TvI~IAH 1503 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV-MSAFSAYTVITIAH 1503 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH-HHHCCCCEEEEEec
Confidence 999999999999999999999999999999999999996 8999999999999999999997654 45567899999999
Q ss_pred CcchhhhcCEEEEEeCCEEEEecChhHHhhc-ChhHHHhHHhhc
Q 000351 799 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENAG 841 (1623)
Q Consensus 799 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 841 (1623)
+++.+..||+|++|++|+|++.|+|+||+++ ++.|.+++...+
T Consensus 1504 Rl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred cHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999975 788988887654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-59 Score=530.89 Aligned_cols=523 Identities=20% Similarity=0.293 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCc--hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 310 KIGNDLSQFVGPLLLNQLLQSMQQDGPA--WIGYIYAFSIFVGVV---LGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKS 384 (1623)
Q Consensus 310 ~l~~~~~~~~~P~ll~~li~~l~~~~~~--~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~~ir~~L~~~i~~K~ 384 (1623)
.++.-++...-|.+.+.+++.+..+... +..+.+.+ +.+.+- +..+..+.-.+...++..-.-..+-..+|++.
T Consensus 224 l~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~-L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHl 302 (790)
T KOG0056|consen 224 LIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVF-LKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHL 302 (790)
T ss_pred HHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHH-HHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHH
Confidence 3444556677899999999988743321 11222222 222111 11233332222222333333336777899999
Q ss_pred hcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Q 000351 385 LRITHEARKNFASGKITNLMTTDAEQLQQVCQA-LHTLWSAPFRIIISLVLLYN-ELGVASLLGALLLVFMFPVQTFIIS 462 (1623)
Q Consensus 385 l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~-~~~~~~~pl~i~i~~~lL~~-~lg~~~l~g~~~~~~~~~~~~~~~~ 462 (1623)
..++....-...+|+++..|..-.+.+. +..+ ...+....+.++++++..+. ...|-.++.++++.+...+...+..
T Consensus 303 h~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTe 381 (790)
T KOG0056|consen 303 HNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITE 381 (790)
T ss_pred HhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeeh
Confidence 9999887777789999999987666655 3322 23444455556666554433 3334555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 463 RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSK----VQNVRNDELSWFRKAQFLAACNSFILNSIPVLVT 538 (1623)
Q Consensus 463 ~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~----i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~~~~ 538 (1623)
.-.++++++..+-.+-...-.+.+-+..++|.|+.|+...++ |.+..++|.+......++....+.+... .+..
T Consensus 382 WRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--gll~ 459 (790)
T KOG0056|consen 382 WRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--GLLA 459 (790)
T ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHhh
Confidence 556666666655555556667889999999999999766555 4444444544444433333333322221 1222
Q ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cCCC-CCCCCCCCcEE
Q 000351 539 VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI-LLPN-PPLTSGLPAIS 616 (1623)
Q Consensus 539 ~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~-~~~~-~~~~~~~~~i~ 616 (1623)
...+.+|.+..+.+|++...-.++++-.+..|++.+...+..++...+-++|+.+.+++++.. +.|. ++.......|+
T Consensus 460 gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~ 539 (790)
T KOG0056|consen 460 GSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIE 539 (790)
T ss_pred hhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEE
Confidence 233455666678899999999999999999999999999999999999999999999876653 3333 23333456799
Q ss_pred EEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCcEEE
Q 000351 617 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVAY 683 (1623)
Q Consensus 617 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~iay 683 (1623)
++|++|.|++ ++|+|+||||++++|+.+++|||+|+||||++++|.+.++..+| .+.+ +++||.
T Consensus 540 fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-sI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 540 FSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-SITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred EEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-eEEEcCchHHHHHHHHHHHhcCc
Confidence 9999999986 68999999999999999999999999999999999999999998 4443 456999
Q ss_pred EccCcccCcccHHHHHhcCCCC-CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q 000351 684 VPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 762 (1623)
Q Consensus 684 ~~Q~~~l~~~Tv~enI~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~il 762 (1623)
|||+..+||.||..||.++++- .+|+..++.++++.++.+-.+|+|+.|.|||+|-.||||+|||||+||+++++|.|+
T Consensus 617 VPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 617 VPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred ccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 9999999999999999999863 567777889999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc-ChhHHHhHHhh
Q 000351 763 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENA 840 (1623)
Q Consensus 763 lLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 840 (1623)
+|||.|||||.++++.|- .++...++|+|.|+|.|+++.+-+||.|+++++|+|+|.|+|+||.++ ++.|+++++.+
T Consensus 697 lLDEATSALDT~tER~IQ-aaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQ-AALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEcchhhhcCCccHHHHH-HHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 999999999999999995 567778899999999999999999999999999999999999999987 78899988644
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-58 Score=627.37 Aligned_cols=211 Identities=26% Similarity=0.339 Sum_probs=174.8
Q ss_pred cEEEEEEEEEeCC-----------CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC--CCcEEEECCEec
Q 000351 1238 SIKFEDVVLRYRP-----------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 1304 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~-----------~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p--~~G~I~IdG~di 1304 (1623)
.+.|+||++..+. +...+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998741 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCChHHhhhceEEEcCCCccccc-cHHhhcCCC------CCCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCC
Q 000351 1305 AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPF------SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373 (1623)
Q Consensus 1305 ~~i~~~~lR~~i~~vpQdp~Lf~g-TIr~NLd~~------~~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1373 (1623)
. ....|+.+|||+|++.++.. ||+|||... ...+++ .+.++++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24567889999999988765 999999631 122322 25566676666543 245555333
Q ss_pred -CCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-h-hccCEEEEEeC-
Q 000351 1374 -ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS- 1448 (1623)
Q Consensus 1374 -~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~t-i-~~~DrI~Vl~~- 1448 (1623)
..||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999875 47999999999984 4 45999999996
Q ss_pred ceEeeecChh
Q 000351 1449 GRVLEYDTPE 1458 (1623)
Q Consensus 1449 G~ive~Gtp~ 1458 (1623)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-57 Score=525.35 Aligned_cols=482 Identities=21% Similarity=0.264 Sum_probs=363.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHH
Q 000351 962 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 1041 (1623)
Q Consensus 962 ~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1041 (1623)
.+.+...++..+++..+...+.+.-.+++...+...+++|..--...+....+ +|++++...+...-...+...--
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 34455777888999999999999999999999999988776544333333333 35556655444322222222222
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHH
Q 000351 1042 LLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 1121 (1623)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~ 1121 (1623)
.-..+++++.+.||+.++.+...++++.+..+--...++--+...+....-..+..-+.++..+|+|.|...+..+++.+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~ 226 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGR 226 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 33445667777888877766666655555544444444444444445555566778889999999999987666555544
Q ss_pred ----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1122 ----SMDKNIRYTLVNMGA---NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL 1194 (1623)
Q Consensus 1122 ----~~d~~~~~~~~~~~~---~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~ 1194 (1623)
.++.+.+........ .+-+-+.++ ..+..+.+.++ ..+.++ +|.+-..-........++-..+
T Consensus 227 ~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ---s~iLg~GA~Lv--i~ge~t-----~G~mIA~SIl~gRaLaPid~aI 296 (580)
T COG4618 227 FNAAYLSAQERASDRNGAFGALSRALRMALQ---SAVLGLGAWLV--IKGEIT-----PGMMIAGSILSGRALAPIDLAI 296 (580)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHhcceeeE--EcCcCC-----cchhhHHHHHhhhhhccHHHHH
Confidence 444444443333222 222222221 22222222222 233343 2222111112223445777888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecC
Q 000351 1195 RLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 1274 (1623)
Q Consensus 1195 ~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGr 1274 (1623)
..|.+.-....|..|+.+..+..++...... -| ..+|.+.+|++++.=++..+|+|+|+||+++|||-+|||||
T Consensus 297 ~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP----~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 297 ANWKQFVAARQSYKRLNELLAELPAAAERMP--LP----APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCCC--CC----CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECC
Confidence 9999999999999999999884333211111 11 13689999999997666666999999999999999999999
Q ss_pred CCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhc
Q 000351 1275 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAH 1353 (1623)
Q Consensus 1275 sGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~ 1353 (1623)
||||||||.++|.|...|.+|.|.+||-|+++++++++=++|||.|||-.||+|||.|||.-|+ +.+++.|.+|.+.++
T Consensus 371 SgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAg 450 (580)
T COG4618 371 SGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450 (580)
T ss_pred CCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998666 778888999999999
Q ss_pred HHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeec
Q 000351 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH 1432 (1623)
Q Consensus 1354 l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaH 1432 (1623)
.||.|.++|+||||.+|++|..||||||||++||||+..+|++++||||-|+||.+-|+.+.++|.+.. +|+|+|+|||
T Consensus 451 vHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaH 530 (580)
T COG4618 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530 (580)
T ss_pred hHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 6899999999
Q ss_pred CchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1433 RLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1433 rl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 531 RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 531 RPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999864
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=563.69 Aligned_cols=512 Identities=14% Similarity=0.134 Sum_probs=385.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 295 LNS-SLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1623)
Q Consensus 295 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir 373 (1623)
+++ .+++.++.++++.++..++....|.+++.+++...... ... ..+.++ ..++..++.....+...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-QGS-LFSFGG---LCLLALLFRIGADIFPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-chH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 77888888999999999999999999998876321111 111 111111 222333444445555677888999
Q ss_pred HHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000351 374 STLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 453 (1623)
Q Consensus 374 ~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~~~ 453 (1623)
..++..+|+|.++++.....+.++|++++++++|++.+++++..+..+....+.+++++++++......+++.++++++.
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~ 165 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIG 165 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999997755555555566565566555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 454 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN--SFQSKVQNVRNDELSWFRKAQFLAACNSFILN 531 (1623)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~--~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~ 531 (1623)
+.+..+..++..+..++..+..++..+.+.|.++|++++|.++.++ ...+++++..++..+...+..........+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (555)
T TIGR01194 166 TAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQ 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677777778888888999999999999999999999854 33444444444333332222222221111111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc-CCC-C
Q 000351 532 SIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK---IL-LPN-P 606 (1623)
Q Consensus 532 ~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~---~~-~~~-~ 606 (1623)
....++..+.+. +....+.++.+.+++++.+...+..|+..+...++.+.++.+|++||.++++.++. .. .+. .
T Consensus 246 ~~~~~~~~~~~~-~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~ 324 (555)
T TIGR01194 246 LLFFLLIGCALF-AAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDAD 324 (555)
T ss_pred HHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 111111111111 11112579999999999999999999999999999999999999999999863211 10 010 0
Q ss_pred -----CCCCCCCcEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-
Q 000351 607 -----PLTSGLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR- 678 (1623)
Q Consensus 607 -----~~~~~~~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~- 678 (1623)
+.......|+++|++|+|++++ .+++|+|+||++++|++++|+||||||||||+++|+|+++|++| .+.+.
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G-~i~~~g 403 (555)
T TIGR01194 325 NVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG-EILLDG 403 (555)
T ss_pred cccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECC
Confidence 0011224699999999997532 24699999999999999999999999999999999999999999 44332
Q ss_pred ------------CcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 679 ------------GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 679 ------------~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
..++|++|+|++|++|+++|+ ..+.++++.+++++.+++.++++.+|+|++|. .+||||||
T Consensus 404 ~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~ 476 (555)
T TIGR01194 404 AAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQ 476 (555)
T ss_pred EECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHH
Confidence 359999999999999999996 23456778889999999999999999999984 78999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 820 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 820 (1623)
||++||||++++|+|+|||||||+||+++++.+.+.+++. ..+|+|+|+|||+++.+..||+|++|++|++++.
T Consensus 477 qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998877653 3468999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=586.62 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=161.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCCCccc-cccHHhhcCCCC-CC-CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1318 IIPQSPVLF-SGTVRFNLDPFS-EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1318 ~vpQdp~Lf-~gTIr~NLd~~~-~~-sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
|+||++.++ +.|+++|+.... .. .+..+.++++..++.+ .......+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~-----------~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER-----------LLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH-----------HHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998754 569999996421 11 1223445555555443 334445679999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecC
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gt 1456 (1623)
+||||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998753 7899999999999876 999999965 8877776
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=598.04 Aligned_cols=472 Identities=16% Similarity=0.221 Sum_probs=367.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000351 365 VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVAS 443 (1623)
Q Consensus 365 ~~r~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~ 443 (1623)
..+.+.+.-..+...++++.++.+...++..+.|+++|+++.|++.+++.+. .+..+....+.+++.+++++...++..
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888889999999999999999999999999999999998654 455556666666666666655555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 444 LLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLA 523 (1623)
Q Consensus 444 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~ 523 (1623)
++.+.++++++.+..+..+..+..++.....++...+.+.|.++|+.+||.|++++.+.++..+.-+...+.........
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333334444455555556666666677778888999999999999999999999999888877664333222221112
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000351 524 ACNSFILNSIPVL-VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 602 (1623)
Q Consensus 524 ~~~~~~~~~~~~~-~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~ 602 (1623)
.+.......+..+ +.++++ +.+.....+++.+..+++++..+..++..+...+..+..+.+|++||.+|++.++...
T Consensus 1109 ~wl~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1109 RWFQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 2222222211111 111111 1111123455556666666777778888888999999999999999999997654321
Q ss_pred CC-C-----------------CC-CCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHH
Q 000351 603 LP-N-----------------PP-LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM 663 (1623)
Q Consensus 603 ~~-~-----------------~~-~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l 663 (1623)
.+ . ++ .-+....|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 10 0 00 01223569999999999853 47899999999999999999999999999999999
Q ss_pred cCCccCCCCCeEEE-------------cCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCC
Q 000351 664 LGELPPVSDASAVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 730 (1623)
Q Consensus 664 ~G~~~~~~g~~~~~-------------~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~ 730 (1623)
+|+++ .+| .+.+ +++|+|+||+|.+|+|||||||.....+++++.+++++.|++.+.+..+|+|.
T Consensus 1266 ~rl~~-~~G-~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1266 LRLLS-TEG-EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred hhhcC-CCc-EEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccc
Confidence 99997 677 4433 45799999999999999999998666788999999999999999999999999
Q ss_pred cccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEE
Q 000351 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 810 (1623)
Q Consensus 731 ~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 810 (1623)
+|.|||+|.+||||||||++|||||+++|+|+|||||||+||+++.+.|.+.+ +...+++|+|+|||+++.+..+|+|+
T Consensus 1344 dt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1344 DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred ccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999998755 44567899999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhcChhHHHhHHhhcc
Q 000351 811 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGK 842 (1623)
Q Consensus 811 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 842 (1623)
+|++|+|++.|+|++|++.++.|.+++++.++
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EEECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 99999999999999999888889988876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=543.52 Aligned_cols=508 Identities=18% Similarity=0.215 Sum_probs=371.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 291 LLRALNSSLGGRFWWGGFWKIGNDLSQFVG-PLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVG 369 (1623)
Q Consensus 291 L~~al~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 369 (1623)
+++.+++.+++.++..+++.++..++.+.. |++.+.+++.+.. .. ..-+.+++.+++.. ++.....+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SL-LVLPEFLGLLLLLM----AVTLGSQLALTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cc-hHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 456777888888999999889988888874 7787888886542 11 11111111111111 22223444455677
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000351 370 FRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALL 449 (1623)
Q Consensus 370 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~ 449 (1623)
.++...++..+|+|.++++....++.++|++++++++|++.+..++..+..++...+.+++++++++...+..+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999998766667777888888888777777666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 450 LVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYA--WENSFQSKVQNVRNDELSWFRKAQFLAACNS 527 (1623)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~--~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~ 527 (1623)
+++.+.+..++.++..+..++..+..+++.+.+.|.++|++++++.+ .++.+.+++.+..++..+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 77777777888888888888999999999999999999999997432 2234455555444433322222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 000351 528 FILNSIPVLVTVVSFGMFTLLGG---DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP 604 (1623)
Q Consensus 528 ~~~~~~~~~~~~~~f~~~~~~~~---~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~ 604 (1623)
.+..... .+.++.+.+.++ ..+.+.+.....+...+..|+..+...++.+.++..+++||.+++..++....+
T Consensus 237 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 237 NWSNIMM----LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111111 111222222111 122222222222233356899999999999999999999999997654322111
Q ss_pred CCCCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------
Q 000351 605 NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------- 677 (1623)
Q Consensus 605 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------- 677 (1623)
.+...+....++++|++|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+
T Consensus 313 ~~~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~ 389 (547)
T PRK10522 313 RPQAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVTA 389 (547)
T ss_pred cccccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCC
Confidence 1111111246999999999974 35799999999999999999999999999999999999999999 4432
Q ss_pred ------cCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 678 ------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 678 ------~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
+++|+|++|+|.+|++|++|| +...++++.+++++.+++..++.. ++|. .+|.+||||||||++|
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLAL 460 (547)
T ss_pred CCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHH
Confidence 346999999999999999999 445667778888888887766653 3221 2478999999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 820 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 820 (1623)
|||++++|+++|||||||+||+++++.+.+.+..... +|+|+|+|||+++.+..||+|++|++|++++.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999887654432 48999999999999999999999999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-55 Score=524.09 Aligned_cols=437 Identities=25% Similarity=0.369 Sum_probs=336.2
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC-------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------- 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~------------- 679 (1623)
+.++++|++++|+. .++|+|+||++.+||+++++|.||+|||||+|+|+|.++|++| .+.+.+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALA 82 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHh
Confidence 46899999999974 6899999999999999999999999999999999999999999 555443
Q ss_pred -cEEEEccCcccC-cccHHHHHhcCCCC-------CHHHHH----HHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 680 -TVAYVPQVSWIF-NATVRDNILFGSAF-------EPARYE----KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 680 -~iay~~Q~~~l~-~~Tv~enI~~g~~~-------~~~~~~----~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
.|+.+.|+.-|+ +.||.|||.+|++. |..+.. ++++..++..+ ......+||+|||
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~Lsiaqr 151 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIAQR 151 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHHHH
Confidence 499999999985 89999999988643 323222 22222222211 2334467999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh-h
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF-E 824 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~-~ 824 (1623)
|-|+||||+..+++|+|||||||+|+.+..+.+|+.+.+...+|.++|+|||+++++. -||||.||.||+.+..++. .
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~ 231 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAA 231 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccccc
Confidence 9999999999999999999999999999999999976666668999999999999875 5899999999998764321 1
Q ss_pred HHhhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHH
Q 000351 825 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 904 (1623)
Q Consensus 825 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 904 (1623)
++. ...+
T Consensus 232 ~~~----------------------------------------------------------~~~l--------------- 238 (500)
T COG1129 232 ETS----------------------------------------------------------EDEL--------------- 238 (500)
T ss_pred CCC----------------------------------------------------------HHHH---------------
Confidence 100 0000
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 905 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 984 (1623)
Q Consensus 905 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~ 984 (1623)
.+.+
T Consensus 239 ----v~~M------------------------------------------------------------------------ 242 (500)
T COG1129 239 ----VRLM------------------------------------------------------------------------ 242 (500)
T ss_pred ----HHHh------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q 000351 985 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 1064 (1623)
Q Consensus 985 ~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1064 (1623)
.|+
T Consensus 243 -------------------------vGr---------------------------------------------------- 245 (500)
T COG1129 243 -------------------------VGR---------------------------------------------------- 245 (500)
T ss_pred -------------------------hCc----------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1065 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 1144 (1623)
Q Consensus 1065 ~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1144 (1623)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCcc
Q 000351 1145 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLV 1223 (1623)
Q Consensus 1145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~-~~~e~~~~ 1223 (1623)
+..+ .|. +.
T Consensus 246 -------------------------------------------------------------------~~~~~~~~--~~- 255 (500)
T COG1129 246 -------------------------------------------------------------------ELEDLFPE--PP- 255 (500)
T ss_pred -------------------------------------------------------------------chhhhccc--cc-
Confidence 0000 000 00
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEe
Q 000351 1224 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 1303 (1623)
Q Consensus 1224 ~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~d 1303 (1623)
++ -+..-.++++|++.. ..++|+||++++||++||.|-=|||+|-++++|+|..++.+|+|.+||.+
T Consensus 256 -----~~--~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~ 322 (500)
T COG1129 256 -----EE--GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP 322 (500)
T ss_pred -----cc--CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEE
Confidence 00 001123678887642 25899999999999999999999999999999999999999999999998
Q ss_pred cCCCChH-HhhhceEEEcCCCc---cc-cccHHhhcCCC--CCCCHH-HHHHHHHHhcHHHHHHhccC---CcchhhhcC
Q 000351 1304 IAKFGLM-DLRKILGIIPQSPV---LF-SGTVRFNLDPF--SEHSDA-DLWEALERAHLKDAIRRNSL---GLDAQVSEA 1372 (1623)
Q Consensus 1304 i~~i~~~-~lR~~i~~vpQdp~---Lf-~gTIr~NLd~~--~~~sd~-~i~~aL~~~~l~~~i~~lp~---gLdt~v~e~ 1372 (1623)
+.--++. ..+..|+|||-|-- +| ..+|++|+..- ..++.. -+...-++....++++++.- +.+..+
T Consensus 323 v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v--- 399 (500)
T COG1129 323 VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI--- 399 (500)
T ss_pred ccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh---
Confidence 8777655 67778999999863 55 55999999632 111101 23344555556677776532 333444
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCce
Q 000351 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 1450 (1623)
Q Consensus 1373 G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1450 (1623)
.+||||++|+++|||+|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+||-.+.++.. ||||+||.+|+
T Consensus 400 -~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gr 478 (500)
T COG1129 400 -GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGR 478 (500)
T ss_pred -hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999876 57999999999999986 99999999999
Q ss_pred EeeecCh
Q 000351 1451 VLEYDTP 1457 (1623)
Q Consensus 1451 ive~Gtp 1457 (1623)
++..=+.
T Consensus 479 i~~e~~~ 485 (500)
T COG1129 479 IVGELDR 485 (500)
T ss_pred EEEEecc
Confidence 9875333
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-54 Score=554.11 Aligned_cols=510 Identities=15% Similarity=0.145 Sum_probs=391.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCC-c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 917 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-P----LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 991 (1623)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~----~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~ 991 (1623)
.+++.+++.++...+....+++.+...+........ - ..+..+++++.+...+..++...+......+..+++|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777666543211111 1 11222333334444455555566666677778888888
Q ss_pred HHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHHHHHHHHH
Q 000351 992 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAA 1070 (1623)
Q Consensus 992 ~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~i 1070 (1623)
+++++....++.|||. ++|++.+|+++|++.+...+...+..++..++.+++.++.+.. .+|.+.++++..+++.+.+
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888888888899987 7899999999999999999998888888888888877776665 6676666666666666677
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000351 1071 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG- 1149 (1623)
Q Consensus 1071 ~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~- 1149 (1623)
.+++.+..+++.+......+.+.+...|.++|+++|++|+.++...+++.+..++..+..........+.....+++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7777777778888888888999999999999999999999999998888888888777777777777776666665543
Q ss_pred ---HHHHHHHHHHHHh-c----CCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000351 1150 ---LMIWLTATFAVVQ-N----GSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 1218 (1623)
Q Consensus 1150 ---~~~~~~~~~~v~~-~----~~~~~~~~~~~~~gl~l~~---~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~ 1218 (1623)
.+.++.+...+.. . +..+ ....++..+.+ ...+..++..+......+.....+.+|+.++.+.++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t----~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMS----EEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222121221 1 2333 12223333333 456678888899999999999999999999987433
Q ss_pred CCC-------cccc--CC----C-----C--CCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCC
Q 000351 1219 EAP-------LVIE--SN----R-----P--PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 1278 (1623)
Q Consensus 1219 e~~-------~~~~--~~----~-----~--~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSG 1278 (1623)
+.. ...+ .. . + .......+.|+++||+++|+++ +++|+|+||+|++||++||+||||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsG 490 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCG 490 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCC
Confidence 210 0000 00 0 0 0000134679999999999643 36999999999999999999999999
Q ss_pred hhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCC--------CCCCHHHHHHHHH
Q 000351 1279 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF--------SEHSDADLWEALE 1350 (1623)
Q Consensus 1279 KSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~--------~~~sd~~i~~aL~ 1350 (1623)
||||+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+++|+... .+.++++++++++
T Consensus 491 KSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 559 (659)
T TIGR00954 491 KSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD 559 (659)
T ss_pred HHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHH
Confidence 99999999999999999999874 6789999999999999999999742 2357889999999
Q ss_pred HhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Q 000351 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1430 (1623)
Q Consensus 1351 ~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~I 1430 (1623)
.+++.+++++ |.|+|+..+. +.+||||||||++||||++++|++||||||||+||+++++.+++.+++ .++|+|+|
T Consensus 560 ~~~l~~~~~~-~~g~~~~~~~-~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~i 635 (659)
T TIGR00954 560 NVQLTHILER-EGGWSAVQDW-MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSV 635 (659)
T ss_pred HcCCHHHHhh-cCCccccccc-ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEE
Confidence 9999999988 8999999874 678999999999999999999999999999999999999999999987 48999999
Q ss_pred ecCchhhhccCEEEEEe
Q 000351 1431 AHRLNTIIDCDRILLLD 1447 (1623)
Q Consensus 1431 aHrl~ti~~~DrI~Vl~ 1447 (1623)
|||++++..||+|++|+
T Consensus 636 sH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 636 SHRKSLWKYHEYLLYMD 652 (659)
T ss_pred eCchHHHHhCCEEEEEe
Confidence 99999999999999997
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=544.83 Aligned_cols=487 Identities=20% Similarity=0.258 Sum_probs=376.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhh
Q 000351 965 FGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 1044 (1623)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~ 1044 (1623)
+...++.--..+.....+.+.-..+-..++++.++.+-..-...+.|+|+|-++.|.+.+++..... ..+...-+.++.
T Consensus 253 ~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~ 331 (1381)
T KOG0054|consen 253 LLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIIL 331 (1381)
T ss_pred HHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333333334455666777777777888888888888887778889999999999999999866543 333334444444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHH
Q 000351 1045 TFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD 1124 (1623)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d 1124 (1623)
++.++...-.+..++.+.++++++.++.+..+..+..+......+.......+|.++|+++||.|+||+.|.++..+.-+
T Consensus 332 ~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~ 411 (1381)
T KOG0054|consen 332 ALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQ 411 (1381)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHH
Confidence 44444444444455555667777777877777777777777778888888999999999999999999999988887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1125 KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV-VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENS 1203 (1623)
Q Consensus 1125 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~ 1203 (1623)
.-.+........+.+..+.......++.+++.+..+ ...+..+ +..+=.++++.-.+..++..+......+-+.
T Consensus 412 ~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt-----~~~aF~slalfniLr~pl~~~P~~i~~~vqa 486 (1381)
T KOG0054|consen 412 KELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLT-----ASTAFTSLALFNILRFPLFMLPSVISQLVQA 486 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444434333333332222222222222222 2233333 3233333444444455666677777777778
Q ss_pred HHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCC-CCCCcccceeeEeCCCCEEEEecCCCCChhhH
Q 000351 1204 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 1282 (1623)
Q Consensus 1204 ~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~-~~~~vL~~isl~I~~GekvgIvGrsGSGKSTL 1282 (1623)
.+|++|+.++...++..+...+. .+.-+.+..|+++|.+|++.+ +.++.|+||||+|++||.+||||++|||||||
T Consensus 487 ~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSL 563 (1381)
T KOG0054|consen 487 KVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSL 563 (1381)
T ss_pred HHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHH
Confidence 99999999999765543322221 111233446999999999976 34459999999999999999999999999999
Q ss_pred HHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhcc
Q 000351 1283 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 1362 (1623)
Q Consensus 1283 l~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp 1362 (1623)
+.+|+|.++..+|++.++|. ++||||.|.+|+|||||||.+..+++++.-.++++.|.|+.-++.+|
T Consensus 564 L~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp 630 (1381)
T KOG0054|consen 564 LSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILP 630 (1381)
T ss_pred HHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcC
Confidence 99999999999999999985 99999999999999999999988999999999999999999999999
Q ss_pred CCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHcCCcEEEEeecCchhhhccC
Q 000351 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCD 1441 (1623)
Q Consensus 1363 ~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~I-q~~L~~~~~~~TvI~IaHrl~ti~~~D 1441 (1623)
.|=.|.+||+|.|||||||||++||||+.++++|.+||.|-|+||+.+-+.| ++.|+...+++|+|.|||.++.+.+||
T Consensus 631 ~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad 710 (1381)
T KOG0054|consen 631 FGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHAD 710 (1381)
T ss_pred CCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCC
Confidence 9999999999999999999999999999999999999999999999998876 556777778999999999999999999
Q ss_pred EEEEEeCceEeeecChhHHhhcCCChHHHHHHH
Q 000351 1442 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1442 rI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~ 1474 (1623)
+|+||++|+|++.|+++||++. ++.|.++..+
T Consensus 711 ~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~ 742 (1381)
T KOG0054|consen 711 QIIVLKDGKIVESGTYEELLKS-GGDFAELAHE 742 (1381)
T ss_pred EEEEecCCeEecccCHHHHHhc-chhHHHHhhc
Confidence 9999999999999999999954 5677777433
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=528.10 Aligned_cols=503 Identities=17% Similarity=0.160 Sum_probs=382.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 302 RFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVF 381 (1623)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i~ 381 (1623)
.++..+++.++.+++....|++++.+++.+.+.+..... ..++..++..++.+++.....+...++..++|..+...++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFA-WILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999988754321110 0111122222233333333444455566666666666666
Q ss_pred HHHhcC----ChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Q 000351 382 RKSLRI----THEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGV-ASLLGALLLVFMFP 455 (1623)
Q Consensus 382 ~K~l~l----~~~~~~~~~~g~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~-~~l~g~~~~~~~~~ 455 (1623)
++.++. +....++ .+|++.+++++|++.+.+.+. .+..+...++.++++++.++..++| .+++.++.+++.+.
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 666553 2222232 579999999999999998654 4566677777777788777776666 44555556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 456 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 535 (1623)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~ 535 (1623)
+..++.+++.+..++..+..++-.+..+|.++|+++||.|+.|+...+++++.-++..+...+..........+...+..
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999998888777777766666666655555444322
Q ss_pred ----HHHHHHHHHHHHh-C----CCcCHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000351 536 ----LVTVVSFGMFTLL-G----GDLTPARAFT-S---LSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 602 (1623)
Q Consensus 536 ----~~~~~~f~~~~~~-~----~~lt~~~~ft-~---l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~ 602 (1623)
.+..+..+...+. . +.+|.+..+. . ..++..+..|+..+...+..+.++.++.+||.++++.++...
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~ 414 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVK 414 (659)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222222222222 1 5688776544 2 334667789999999999999999999999999997543211
Q ss_pred C--------CC-----------------CCCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChh
Q 000351 603 L--------PN-----------------PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 657 (1623)
Q Consensus 603 ~--------~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKS 657 (1623)
. +. .........|+++|++|.|++ ++++|+|+||+|++||+++|+||||||||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKS 492 (659)
T TIGR00954 415 SGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKS 492 (659)
T ss_pred cccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHH
Confidence 0 00 000112246999999999963 35799999999999999999999999999
Q ss_pred HHHHHHcCCccCCCCCeEEE--cCcEEEEccCcccCcccHHHHHhcCC--------CCCHHHHHHHHHHhCchhHHhcCC
Q 000351 658 SLISAMLGELPPVSDASAVI--RGTVAYVPQVSWIFNATVRDNILFGS--------AFEPARYEKAIDVTSLQHDLDLLP 727 (1623)
Q Consensus 658 TLl~~l~G~~~~~~g~~~~~--~~~iay~~Q~~~l~~~Tv~enI~~g~--------~~~~~~~~~~~~~~~l~~~~~~l~ 727 (1623)
||+++|+|+++|++| .+.. +.+++||||+|+++++|++|||.++. ..++++..++++.+++.+.++. |
T Consensus 493 TLl~lL~Gl~~~~~G-~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~ 570 (659)
T TIGR00954 493 SLFRILGELWPVYGG-RLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-E 570 (659)
T ss_pred HHHHHHhCCCCCCCC-eEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-c
Confidence 999999999999988 4444 45799999999999999999999873 2456778889999999988877 8
Q ss_pred CCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcC
Q 000351 728 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 807 (1623)
Q Consensus 728 ~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d 807 (1623)
.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.. .|+|+|+|||+++.++.||
T Consensus 571 ~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 571 GGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred CCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCC
Confidence 89899876 5779999999999999999999999999999999999999999876543 3899999999999999999
Q ss_pred EEEEEeC
Q 000351 808 RIILVHE 814 (1623)
Q Consensus 808 ~i~~l~~ 814 (1623)
+|++|++
T Consensus 647 ~il~l~~ 653 (659)
T TIGR00954 647 YLLYMDG 653 (659)
T ss_pred EEEEEeC
Confidence 9999974
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=487.47 Aligned_cols=440 Identities=25% Similarity=0.414 Sum_probs=342.0
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC-------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------- 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~------------- 679 (1623)
..++++++++.|+ +-.+++||||++++||+.+|+|.||+|||||+++|.|.++|++| .+.+.|
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G-eI~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG-EIRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcc-eEEECCEEeccCCHHHHHH
Confidence 4699999999998 46799999999999999999999999999999999999999999 555443
Q ss_pred -cEEEEccCcccC-cccHHHHHhcCCCC------CH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 680 -TVAYVPQVSWIF-NATVRDNILFGSAF------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 680 -~iay~~Q~~~l~-~~Tv~enI~~g~~~------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
.||+|.|++.|+ +.||.|||..|.+- +. ++..+..+..++.-|.+ +....||=|+||
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQ 147 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQ 147 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhH
Confidence 499999999997 78999999998753 22 23344444555543332 334579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 826 (1623)
||.|-+|||++|+++|||||||.|-|...+.+|+.+......|+|||+|||.+.++.. ||++-||.+|+++..- +..
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~--~~~ 225 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV--DPV 225 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee--cCC
Confidence 9999999999999999999999999999999999777666679999999999998765 8999999999976321 100
Q ss_pred hhcChhHHHhHHhhcchhhhhcccccCcccccCCCCCCCCCCCCCCCcccccccccccchhhhhhHhhhhcccchHHHHH
Q 000351 827 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 906 (1623)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 906 (1623)
. +. . .++
T Consensus 226 ~-----------------------------------~~--------------------t-----~~e------------- 232 (501)
T COG3845 226 A-----------------------------------ET--------------------T-----EEE------------- 232 (501)
T ss_pred C-----------------------------------CC--------------------C-----HHH-------------
Confidence 0 00 0 000
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhchhhhhcccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 907 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 986 (1623)
Q Consensus 907 ~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s 986 (1623)
.
T Consensus 233 -----l-------------------------------------------------------------------------- 233 (501)
T COG3845 233 -----L-------------------------------------------------------------------------- 233 (501)
T ss_pred -----H--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 000351 987 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 1066 (1623)
Q Consensus 987 ~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1066 (1623)
T Consensus 234 -------------------------------------------------------------------------------- 233 (501)
T COG3845 234 -------------------------------------------------------------------------------- 233 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1067 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 1146 (1623)
Q Consensus 1067 ~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1146 (1623)
.++.
T Consensus 234 ---------------a~lM------------------------------------------------------------- 237 (501)
T COG3845 234 ---------------AELM------------------------------------------------------------- 237 (501)
T ss_pred ---------------HHHh-------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccC
Q 000351 1147 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 1226 (1623)
Q Consensus 1147 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~ 1226 (1623)
....+ ..+. .
T Consensus 238 ---------------vG~~v------------------------------------------------~~~~------~- 247 (501)
T COG3845 238 ---------------VGREV------------------------------------------------VLRV------V- 247 (501)
T ss_pred ---------------cCCcc------------------------------------------------cccc------c-
Confidence 00000 0000 0
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEec-C
Q 000351 1227 NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-A 1305 (1623)
Q Consensus 1227 ~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di-~ 1305 (1623)
. ++.-|..-.++++|++..-+.+ -+.+++|||+|++||++||.|-.|-|-|-|+.+|.|+..|.+|+|.++|.|+ .
T Consensus 248 -~-~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~ 324 (501)
T COG3845 248 -K-PPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324 (501)
T ss_pred -c-CCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccc
Confidence 0 0111223358999999876443 3689999999999999999999999999999999999999999999999997 6
Q ss_pred CCChHHhhhc-eEEEcCCCc----cccccHHhhcCCCCCC----------CHHHHHHHHHHhcHHHHHHhc---cCCcch
Q 000351 1306 KFGLMDLRKI-LGIIPQSPV----LFSGTVRFNLDPFSEH----------SDADLWEALERAHLKDAIRRN---SLGLDA 1367 (1623)
Q Consensus 1306 ~i~~~~lR~~-i~~vpQdp~----Lf~gTIr~NLd~~~~~----------sd~~i~~aL~~~~l~~~i~~l---p~gLdt 1367 (1623)
..++...|+. +++||.|.. ..+-|+.||+-+.... .-.++.+ ...+.++++ +.+.++
T Consensus 325 ~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-----~a~~li~~fdVr~~~~~~ 399 (501)
T COG3845 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-----FARELIEEFDVRAPSPDA 399 (501)
T ss_pred cCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-----HHHHHHHHcCccCCCCCc
Confidence 7788887765 999999984 4566999998532111 1122222 223344443 234444
Q ss_pred hhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEE
Q 000351 1368 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILL 1445 (1623)
Q Consensus 1368 ~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~V 1445 (1623)
++ .+||||++||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-+|+++.. ||||.|
T Consensus 400 ~a----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaV 475 (501)
T COG3845 400 PA----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAV 475 (501)
T ss_pred ch----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeee
Confidence 33 5799999999999999999999999999999999999999999998876 57899999999999987 999999
Q ss_pred EeCceEeeecChhH
Q 000351 1446 LDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1446 l~~G~ive~Gtp~e 1459 (1623)
|.+|+++....|++
T Consensus 476 i~~Gri~~~~~~~~ 489 (501)
T COG3845 476 IYEGRIVGIVPPEE 489 (501)
T ss_pred eeCCceeccccccc
Confidence 99999998887765
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=466.48 Aligned_cols=461 Identities=23% Similarity=0.356 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000351 373 RSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQA-LHTLWSAPFRIIISLVLLYNELGVASLLGALLLV 451 (1623)
Q Consensus 373 r~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~-~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~~~ 451 (1623)
-..+.-..|.++++|+.....+..+|.+..-+..-.+-|+....+ +..+....+++++.++++++..||......++.+
T Consensus 14 ~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv 93 (497)
T COG5265 14 VRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTV 93 (497)
T ss_pred HHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 335666778899999887777777777665555555556655543 4566777889999999999988886555444444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 452 FM-FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFIL 530 (1623)
Q Consensus 452 ~~-~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~ 530 (1623)
++ ..+...+...-...+++..++-.+-.....+.|-+..++|.|+-|+.+..+..+..+...+...|...-..+.++..
T Consensus 94 ~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ 173 (497)
T COG5265 94 ILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQ 173 (497)
T ss_pred HHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 44 43333333333344445455555555666799999999999999999888877666654444333322222222211
Q ss_pred HHH--HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-CCC-C
Q 000351 531 NSI--PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-P 606 (1623)
Q Consensus 531 ~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~-~~~-~ 606 (1623)
..+ ..+....+.+...+..+.+|.+.....-++...+..|++.+...+..+.+++...++..+.+..+.... .++ +
T Consensus 174 ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~ 253 (497)
T COG5265 174 TAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAP 253 (497)
T ss_pred HHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCc
Confidence 111 111222333334445788999999999999999999999999999999999999999999887654322 222 1
Q ss_pred CCC-CCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------
Q 000351 607 PLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------- 678 (1623)
Q Consensus 607 ~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------- 678 (1623)
+.. .....+.++|++|.|.+ .+++|+++||++++|+.+++||++|+||||++++|.+.+++.+| .+.+.
T Consensus 254 ~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG-~I~id~qdir~v 330 (497)
T COG5265 254 PLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG-SITIDGQDIRDV 330 (497)
T ss_pred cccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc-eEEEcchhHHHh
Confidence 122 23356999999999986 58999999999999999999999999999999999999999999 54433
Q ss_pred ------CcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 679 ------GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 679 ------~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
+.||.|||+..|||.|+..||.+|.+ ..+++..++.+++++.+.++.+|+|++|.|||+|-.||||+|||||+
T Consensus 331 tq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvai 410 (497)
T COG5265 331 TQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAI 410 (497)
T ss_pred HHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHH
Confidence 35999999999999999999999976 46788889999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcCh
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 831 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 831 (1623)
||+++++|+|++|||.||+||.+|++.|-.. ++...+|+|.++|.|+++.+-.||.|+||++|+|+|.|+|++|+..++
T Consensus 411 ar~ilk~p~il~~deatsaldt~te~~iq~~-l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g 489 (497)
T COG5265 411 ARTILKNPPILILDEATSALDTHTEQAIQAA-LREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489 (497)
T ss_pred HHHHhcCCCEEEEehhhhHhhhhHHHHHHHH-HHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCC
Confidence 9999999999999999999999999999765 455668999999999999999999999999999999999999999999
Q ss_pred hHHHhH
Q 000351 832 LFQKLM 837 (1623)
Q Consensus 832 ~~~~~~ 837 (1623)
.|++++
T Consensus 490 ~ya~mw 495 (497)
T COG5265 490 LYAEMW 495 (497)
T ss_pred hHHHHh
Confidence 998876
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=482.82 Aligned_cols=242 Identities=35% Similarity=0.680 Sum_probs=229.8
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||.++.+++...+|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5699999999997555579999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcE
Q 000351 1317 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1317 ~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~I 1396 (1623)
+||||+|.+|++|+++|++++...++++++++++.+++.+++.++|.++|+.++++|.+||||||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHHHhh
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1476 (1623)
Q Consensus 1397 LlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~~~~ 1476 (1623)
|||||||++||+.+++.+++.|++.++++|||+||||++++..||||+||++|+++++|+|++|+++ .+.|++++..++
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999998889999999999999999999999999999999999999985 478999998876
Q ss_pred hhhH
Q 000351 1477 AANA 1480 (1623)
Q Consensus 1477 ~~~~ 1480 (1623)
....
T Consensus 239 ~~~~ 242 (275)
T cd03289 239 RLKL 242 (275)
T ss_pred hHHH
Confidence 5443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=456.99 Aligned_cols=196 Identities=22% Similarity=0.332 Sum_probs=160.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|.++||+|+|.++. .++++++|.|.++++|++|||||+|||||++++.|.+.|+.|.|.-.-.. +++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 499999999998764 79999999999999999999999999999999999999999998654322 233
Q ss_pred EEcCCC---ccccccHHhhcCC-CC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1318 IIPQSP---VLFSGTVRFNLDP-FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1318 ~vpQdp---~Lf~gTIr~NLd~-~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
+.-|.- ..++.|.-+++.+ |. .-..+++...|.++||..-.+..| + .+||+|||.|+++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHHhc
Confidence 333432 3345566666543 44 345677888899988864333322 2 4799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeee-cCh
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTP 1457 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~-Gtp 1457 (1623)
+|.||||||||++||.+|-..+.++|.+ ...+||+|+|+...|.+ +++|++.++|.+... |..
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999987 46789999999999988 999999999998765 443
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=458.91 Aligned_cols=256 Identities=23% Similarity=0.359 Sum_probs=215.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcccc------C---CCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEec
Q 000351 1203 SLNAVERVGNYIELPSEAPLVIE------S---NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 1273 (1623)
Q Consensus 1203 ~~~aveRi~~~~~~~~e~~~~~~------~---~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvG 1273 (1623)
.+.+++|...|...+.|.....+ . ...+..||..+.|+|+|++++|+++.+++|+|+||+|++||++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG 115 (329)
T PRK14257 36 KLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIG 115 (329)
T ss_pred ccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEEC
Confidence 45566666666665444321111 0 11134699999999999999997544579999999999999999999
Q ss_pred CCCCChhhHHHHhhcccc-----CCCcEEEECCEecC--CCChHHhhhceEEEcCCCccccccHHhhcCC---CCCCCHH
Q 000351 1274 RTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIA--KFGLMDLRKILGIIPQSPVLFSGTVRFNLDP---FSEHSDA 1343 (1623)
Q Consensus 1274 rsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~--~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~---~~~~sd~ 1343 (1623)
|||||||||+++|+|+++ |++|+|.|||+|+. +++...+|++++||||+|.+|++|+++||++ +...+++
T Consensus 116 ~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~ 195 (329)
T PRK14257 116 PSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR 195 (329)
T ss_pred CCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChH
Confidence 999999999999999997 57999999999997 4566788999999999999999999999983 2234555
Q ss_pred HH-----HHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 000351 1344 DL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 1418 (1623)
Q Consensus 1344 ~i-----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L 1418 (1623)
+. .++++.++++ .++++.+++.|.+||||||||+|||||++++|+||||||||++||+++.+.+++.|
T Consensus 196 ~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i 268 (329)
T PRK14257 196 KILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268 (329)
T ss_pred HHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 54 4445555543 35678889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCC
Q 000351 1419 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1419 ~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~ 1465 (1623)
++.++++|+|+|||+++++.+ ||||+||++|+|+|.|+|+++..++.
T Consensus 269 ~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 269 LELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 999889999999999999988 99999999999999999999987654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=401.64 Aligned_cols=215 Identities=29% Similarity=0.480 Sum_probs=192.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecC-CCChHHhhhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~-~i~~~~lR~~i 1316 (1623)
.|+++||+++|++. .||+|||++|++||++.||||||||||||+++|.|+-+|++|+|.|||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999754 7999999999999999999999999999999999999999999999998774 33788899999
Q ss_pred EEEcCCCccccc-cHHhhcCCCC----CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFS----EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~----~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
|+|+|...||+. |+-+|+.... ..+ ++.-.+.|+++||.+.....| ..||||||||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999987 9999996321 222 233455678888888777776 47999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCC
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~ 1465 (1623)
|||.-+|+|+++|||||+|||+.-..+.+.+++.. .|.|+|+|||.+....+ +|||+.||+|+|+|.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999976 47899999999999988 99999999999999999999998764
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=427.80 Aligned_cols=195 Identities=19% Similarity=0.312 Sum_probs=162.9
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
..+++.+|+|.|.|+.++.++++++++..-+++++||+||+||||+++++.+-.+|..|.+-+. -|.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-----------~r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-----------PRLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-----------cccee
Confidence 4599999999999886679999999999999999999999999999999999999999998776 36789
Q ss_pred EEEcCCCccc-cccHHh--hc-CCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1317 GIIPQSPVLF-SGTVRF--NL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1317 ~~vpQdp~Lf-~gTIr~--NL-d~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
+|-.|.-+=| +-++-. -+ .-+...+++|+.+.|...|+..-+... .-..||||||-||++|-....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcC
Confidence 9999987633 222211 01 123344899999998886654433221 125699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeee
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1454 (1623)
+|.+|||||||++||.++-..+-++|+.. +.-||+|||+.+.+.. |+.++|.++|+|.-+
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 99999999999999999999999999873 4469999999999988 999999999999874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=411.41 Aligned_cols=217 Identities=31% Similarity=0.475 Sum_probs=191.7
Q ss_pred EEEEEEEEEeCCC---CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH---Hh
Q 000351 1239 IKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DL 1312 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~---~l 1312 (1623)
|+++||++.|+.. ...+|+||||+|++||+.||+|+||||||||++++.++-+|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 24699999999999999999999999999999999999999999999999998877655 45
Q ss_pred hhceEEEcCCCcccc-ccHHhhcCC-CC--CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1313 RKILGIIPQSPVLFS-GTVRFNLDP-FS--EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~-gTIr~NLd~-~~--~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
|++||+|+|++.|++ .||.+|+.+ .. ..+. +++.+.|+.+||.|...+.| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 778999999999997 599999973 21 2333 34666777777777666655 58999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+|||||..+|+||+.|||||+|||+|-+.|.+.|++..+ |-||++|||-|+.+++ ||||.||++|+|+|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998653 7899999999999998 9999999999999999999998
Q ss_pred hcCCC
Q 000351 1462 SNEGS 1466 (1623)
Q Consensus 1462 ~~~~~ 1466 (1623)
.++..
T Consensus 231 ~~Pk~ 235 (339)
T COG1135 231 ANPKH 235 (339)
T ss_pred cCcch
Confidence 87743
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=414.17 Aligned_cols=239 Identities=50% Similarity=0.819 Sum_probs=221.8
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhh
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
..|.|+++|++++|+....++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35789999999999753346999999999999999999999999999999999999999999999999999988889999
Q ss_pred ceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
+++|+||+|.+|++|+++|+++.....+++++++++..++.+++..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875444567788999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHHH
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|+.++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 9999999999999999999999999877789999999999999899999999999999999999998877777777654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=392.30 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=196.4
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+|+|||++|.+. .+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 7999999999743 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHH--HHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLK--DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~--~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
|=|..-||+. ||.+|+..-. ..+ ++++.|.++.++|. +|..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999976 9999996322 223 34466677777774 4666665 579999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCC
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~ 1465 (1623)
||..+|+||++|||.++||+-|...+|+-+.+..+ ++|+|+|||++++... +|||+||++|+|+.+|+|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999887654 7999999999999766 99999999999999999999999887
Q ss_pred ChHHH
Q 000351 1466 SSFSK 1470 (1623)
Q Consensus 1466 ~~f~~ 1470 (1623)
..|-+
T Consensus 229 n~FV~ 233 (309)
T COG1125 229 NDFVE 233 (309)
T ss_pred HHHHH
Confidence 66654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=382.37 Aligned_cols=219 Identities=26% Similarity=0.448 Sum_probs=198.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCC-----cEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~-----G~I~IdG~di~~--i~~~ 1310 (1623)
.++++|+++-|+.. .+|+|||++|++++++|++|||||||||++++|.|+.+..+ |+|.+||.||-+ ++.-
T Consensus 7 ~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 58999999999754 79999999999999999999999999999999999999875 999999999976 4788
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCC-------CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFS-------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~-------~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
.+|+++|+|+|.|.-|+.||+||+.... ..-|+-+.++|+++.||+-+... +.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccCCChhHHHH
Confidence 9999999999999999999999997431 12245688899999999988653 445677899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||||.-+|+||+||||||+|||.+-..|++.|.+..++-|||+|||.|.-..+ +|+...+-.|+++|+|..+++-.
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999889999999999999877 99999999999999999999987
Q ss_pred cCC
Q 000351 1463 NEG 1465 (1623)
Q Consensus 1463 ~~~ 1465 (1623)
++.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=403.62 Aligned_cols=233 Identities=36% Similarity=0.599 Sum_probs=213.1
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999996533579999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEE
Q 000351 1319 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397 (1623)
Q Consensus 1319 vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~IL 1397 (1623)
+||++.+|+.|+++||.... ..+.+++.++++..++.++++.+|.|+++..+..+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999998543 24556777888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHHH
Q 000351 1398 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1398 lLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l~ 1472 (1623)
||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|..++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 999999999999999999999998778999999999999988999999999999999999999876 45565544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=398.52 Aligned_cols=221 Identities=69% Similarity=1.076 Sum_probs=208.8
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
|.|+++|++++|+....++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999975434799999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcE
Q 000351 1317 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1317 ~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~I 1396 (1623)
+|+||+|.+|++|+++|++++...+++++.++++..++.+++.++|.|+++.+++.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999997766778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecCh
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1397 LlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp 1457 (1623)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999988778999999999999989999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=417.09 Aligned_cols=265 Identities=20% Similarity=0.285 Sum_probs=217.0
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCcEEEEeeEEEcCCCC
Q 000351 549 GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKA 628 (1623)
Q Consensus 549 ~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~ 628 (1623)
.+.+++..+|+++++|+.+..|+..++..... ..|+..|+..++......+...+....|+++|++++|++ .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~-~ 93 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN-R 93 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecC-C
Confidence 35789999999999999999998877765433 568999987655321100111233457999999999974 2
Q ss_pred CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc-----CCCCCeE--------------EEcCcEEEEccCcc
Q 000351 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASA--------------VIRGTVAYVPQVSW 689 (1623)
Q Consensus 629 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~--------------~~~~~iay~~Q~~~ 689 (1623)
.+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|... ..++.++||||+||
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 4679999999999999999999999999999999999986 4577321 12457999999999
Q ss_pred cCcccHHHHHhcCCC---CC-HH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000351 690 IFNATVRDNILFGSA---FE-PA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1623)
Q Consensus 690 l~~~Tv~enI~~g~~---~~-~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~i 761 (1623)
+|++||+|||.|+.. ++ ++ .+..+++.|++.++++ +.++++|.+|||||||||+||||++++|+|
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~I 246 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEV 246 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 999999999998642 22 22 2567788888765543 568899999999999999999999999999
Q ss_pred EEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000351 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 762 llLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
+||||||+|||+++.+++.+ ++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 247 lLLDEPts~LD~~~~~~i~~-~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 247 LLMDEPTSALDPIATAKIEE-LILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999765 55666678999999999999876 999999999999999999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=370.16 Aligned_cols=202 Identities=31% Similarity=0.488 Sum_probs=178.1
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------C
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------G 679 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------------~ 679 (1623)
.|+++|++++|+. ..+|+|||++|++||+++|+|||||||||||++|.|+.+|++| .+.+. .
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc-eEEECCEeccchhhHHHHHH
Confidence 5899999999973 5799999999999999999999999999999999999999999 44443 3
Q ss_pred cEEEEccCcccC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~~l~-~~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
++|+|+|+..|| ..||.|||..+. ..+. ++..+.++..+|.+-.+..|. .||||||||||
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVA 146 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVA 146 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHH
Confidence 589999999998 789999999862 1222 334556788899888888885 89999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
|||||.-+|+++|+|||||||||+....+.+-+......|.|.|+|||.+.|... ||||+.|++|+|+++|+++++..+
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999988666666679999999999999986 699999999999999999999865
Q ss_pred C
Q 000351 830 G 830 (1623)
Q Consensus 830 ~ 830 (1623)
.
T Consensus 227 p 227 (240)
T COG1126 227 P 227 (240)
T ss_pred C
Confidence 4
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=390.72 Aligned_cols=213 Identities=35% Similarity=0.557 Sum_probs=189.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.++++|++++|++. ++|+|+||+|++||.++|+||||||||||+++|.|++.|.+|+|.+||.|+.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 37899999999743 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHHhhcC----C----CCCCC--H-HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1318 IIPQSPVL-FSGTVRFNLD----P----FSEHS--D-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1318 ~vpQdp~L-f~gTIr~NLd----~----~~~~s--d-~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
||||++.. |.-||+|-+. | +...+ | +.+.+||+.+++.++..+. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 4559988553 2 22222 3 3477889999988876653 3469999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||.++|+||+||||||+||....-.+++.+++.. ++.|+|+|.|+++.... ||++++|++|+++..|+|+|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 36999999999998765 99999999999999999999885
Q ss_pred c
Q 000351 1463 N 1463 (1623)
Q Consensus 1463 ~ 1463 (1623)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 3
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=391.37 Aligned_cols=226 Identities=43% Similarity=0.709 Sum_probs=209.6
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
|.|+++|++++|+.. +++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 468999999999632 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1317 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1317 ~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
+|+||++.+|++|+++|+..+. ...++++.++++..++.++++++|.|+++.++....+||||||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998653 345677888899999999999999999999999899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
+|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999988678999999999999988999999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=391.85 Aligned_cols=226 Identities=38% Similarity=0.643 Sum_probs=208.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+....++++|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999996543369999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEE
Q 000351 1319 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397 (1623)
Q Consensus 1319 vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~IL 1397 (1623)
+||++.+|+.|+++|+..+. ..+.+++.+.++..++.++++.+|.|+++.++....+||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998643 33556677788888999999999999999998888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcC
Q 000351 1398 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1398 lLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++..+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999999999987889999999999999889999999999999999999987653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=430.57 Aligned_cols=199 Identities=28% Similarity=0.382 Sum_probs=167.6
Q ss_pred CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc--CCCcEEEECCEecCCCChHHhhhceEEEcCCCccc-c
Q 000351 1251 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-S 1327 (1623)
Q Consensus 1251 ~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~--p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf-~ 1327 (1623)
+....|+|||=-++||.-+|++|.||||||||++.|.|-.. ..+|+|+|||.+..+ +..++++|||.|++.-. .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44579999999999999999999999999999999998653 247999999999765 78999999999998644 4
Q ss_pred ccHHhhcCC------CCCCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC-cE
Q 000351 1328 GTVRFNLDP------FSEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS-KI 1396 (1623)
Q Consensus 1328 gTIr~NLd~------~~~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p-~I 1396 (1623)
-||||-|.+ -.+.+++| +.++++..+|.++- |..||..|..||..||.||.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 499998852 12334433 55666666665543 45688888999999999999999999999 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhh--hccCEEEEEe-CceEeeecChhH
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI--IDCDRILLLD-SGRVLEYDTPEE 1459 (1623)
Q Consensus 1397 LlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti--~~~DrI~Vl~-~G~ive~Gtp~e 1459 (1623)
|.|||||||||+++...|.+.+|+.. .|+||++.=|..+.. +.+|+++.|+ .|+.|-+|++.+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999876 689999999998863 5699999998 689999998754
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=382.74 Aligned_cols=207 Identities=61% Similarity=0.992 Sum_probs=187.8
Q ss_pred CCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh
Q 000351 1233 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1233 wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1312 (1623)
||..+.|+++|++++|+....++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 88899999999999997533469999999999999999999999999999999999999999999999999988888888
Q ss_pred hhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1313 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
|++++|+||+|.+|++|+++|+..+...+++++.++++ +++....||||||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998665555555544443 234567899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecCh
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp 1457 (1623)
+|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=369.88 Aligned_cols=217 Identities=30% Similarity=0.512 Sum_probs=190.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---hhh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR~ 1314 (1623)
.|++++|+++|+.. .|++||||+|++||.+||+|+||||||||++++.|++.|++|+|.|+|.|+.+++.++ +|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999754 7999999999999999999999999999999999999999999999999999988754 589
Q ss_pred ceEEEcCCCccccc-cHHhhcCC-CC---CCCHHHHHH----HHHHhcHHHH-HHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDP-FS---EHSDADLWE----ALERAHLKDA-IRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~g-TIr~NLd~-~~---~~sd~~i~~----aL~~~~l~~~-i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
++|+++|.-.||+. ||+||+.+ .. ..+++++.+ -|+.+||..- .+.+ .+.||||.|.|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chhhcchHHHHH
Confidence 99999999999977 99999973 33 334554443 3555666544 2333 357999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+|||||.-+|+||++|||||+|||-+...+-+.|++..+ +.|+++|||+++++.. ||||+++.+|+|+..|+++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999988754 7899999999999987 8999999999999999999999
Q ss_pred hcCCCh
Q 000351 1462 SNEGSS 1467 (1623)
Q Consensus 1462 ~~~~~~ 1467 (1623)
+..+-.
T Consensus 235 ~sd~P~ 240 (263)
T COG1127 235 ASDDPW 240 (263)
T ss_pred hCCCHH
Confidence 865533
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=409.49 Aligned_cols=220 Identities=27% Similarity=0.429 Sum_probs=189.9
Q ss_pred EEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---hh
Q 000351 1239 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR 1313 (1623)
|+++||+++|+.+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7999999999632 236999999999999999999999999999999999999999999999999999887655 47
Q ss_pred hceEEEcCCCcccc-ccHHhhcCCC---CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1314 KILGIIPQSPVLFS-GTVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~-gTIr~NLd~~---~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
++|+||||++.+|. .|+++|+... ...+. +++.++++.+++.+...+ ....||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 78999999999996 6999999631 11222 345667777776655443 33579999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||+.+|+|||||||||+||+++.+.|.+.|++..+ +.|||+|||+++.+.. ||||++|++|+|+|.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998754 7899999999999977 99999999999999999999987
Q ss_pred cCCChHH
Q 000351 1463 NEGSSFS 1469 (1623)
Q Consensus 1463 ~~~~~f~ 1469 (1623)
++...+.
T Consensus 231 ~p~~~~~ 237 (343)
T TIGR02314 231 HPKTPLA 237 (343)
T ss_pred CCCcHHH
Confidence 6554443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=388.15 Aligned_cols=231 Identities=43% Similarity=0.719 Sum_probs=210.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 369999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEE
Q 000351 1319 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397 (1623)
Q Consensus 1319 vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~IL 1397 (1623)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997532 34667788889999999999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhcCCChHHHH
Q 000351 1398 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471 (1623)
Q Consensus 1398 lLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l 1471 (1623)
||||||++||+++.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++..+ .+.|..+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~ 232 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEM 232 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHH
Confidence 999999999999999999999987668899999999999988999999999999999999998764 3444433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=370.43 Aligned_cols=221 Identities=31% Similarity=0.474 Sum_probs=187.2
Q ss_pred cEEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC-hHHhhh
Q 000351 1238 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~-~~~lR~ 1314 (1623)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 389999999997541 24999999999999999999999999999999999999999999999997766543 335677
Q ss_pred ceEEEcCCCc--ccc-ccHHhhcC-CCCC----CCHHHHHHHHHHhcHHH-HHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1315 ILGIIPQSPV--LFS-GTVRFNLD-PFSE----HSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1315 ~i~~vpQdp~--Lf~-gTIr~NLd-~~~~----~sd~~i~~aL~~~~l~~-~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
.+.+|+|||. |=+ -||++-|. |... ....+++++|+.+|+.+ +..+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999996 222 37777663 3332 23456899999999864 555555 469999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--cEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~--~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||.-+|++||||||||+||+-..+.|++.+.+..++ -|.|+|||++..+.. ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999987765 499999999999998 99999999999999999999987
Q ss_pred cCCChHH
Q 000351 1463 NEGSSFS 1469 (1623)
Q Consensus 1463 ~~~~~f~ 1469 (1623)
.....|.
T Consensus 232 ~~~h~yt 238 (252)
T COG1124 232 HPSHPYT 238 (252)
T ss_pred CCccHHH
Confidence 6444443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=397.70 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=196.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|++.. +|+|+||+|+.||.++|+||||||||||+++|.|+.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 489999999997542 999999999999999999999999999999999999999999999999999999865 7899
Q ss_pred EEcCCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~-------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
+|+|+..||+. ||++||.+.-. .-++++.++++..++.+.+++.| ..||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999977 99999974321 23566888888888888888776 4799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
|+++|++++||||.|+||++....+...|++..+ +.|+|.|||+-.+++. +|||+||++|+|.+.|+|.|+..++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999988654 5899999999999887 999999999999999999999988876
Q ss_pred hHH
Q 000351 1467 SFS 1469 (1623)
Q Consensus 1467 ~f~ 1469 (1623)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=380.91 Aligned_cols=209 Identities=29% Similarity=0.461 Sum_probs=184.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+.+ +||+||||+|++||.+||+||||||||||+++++|++.|++|+|.+.|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 49999999999755 59999999999999999999999999999999999999999999999998866432 57899
Q ss_pred EEcCCC---ccccccHHhhcCCC-----------CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1318 IIPQSP---VLFSGTVRFNLDPF-----------SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1318 ~vpQdp---~Lf~gTIr~NLd~~-----------~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
||||.. .-|+-||+|-+... +..+.+++.+||+++++.++..+. + ..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-------i----~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-------I----GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-------c----cccCcHHHHH
Confidence 999965 35788999976432 122357899999999999876542 3 3599999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+.|||||+++|++|+|||||+++|+.++..|.+.|++..+ |||||+|+|+++.+.+ ||+|+.|.+ ++...|+|++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999999999999999999999999999999999874 8999999999999987 999999975 899999999988
Q ss_pred hc
Q 000351 1462 SN 1463 (1623)
Q Consensus 1462 ~~ 1463 (1623)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 54
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=381.84 Aligned_cols=219 Identities=37% Similarity=0.600 Sum_probs=200.4
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
|.|+++|++++|+....++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 45899999999964324699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1317 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1317 ~~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
+|+||++.+|..|+++|+.... ..+++++.+.++..++.+.+.+.|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999997542 235567888899999999999999999999988888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeec
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G 1455 (1623)
+|||||||++||+++.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988679999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=386.24 Aligned_cols=225 Identities=41% Similarity=0.664 Sum_probs=206.1
Q ss_pred EEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1239 IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
|+++|++++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 236999999999999999999999999999999999999999999999999998888878888999
Q ss_pred EEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcE
Q 000351 1318 IIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1318 ~vpQdp~Lf~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~I 1396 (1623)
|+||+|.+|+.|+++|+.... ....+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999997542 3345667778888899999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1397 LlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999987678999999999999988999999999999999999988754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=400.18 Aligned_cols=221 Identities=20% Similarity=0.373 Sum_probs=187.5
Q ss_pred CccEEEEEEEEEeCCC---CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC-----
Q 000351 1236 SGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----- 1307 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i----- 1307 (1623)
...|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3459999999999642 13699999999999999999999999999999999999999999999999998653
Q ss_pred -----------ChHHhhhceEEEcCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcc-hhhh
Q 000351 1308 -----------GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVS 1370 (1623)
Q Consensus 1308 -----------~~~~lR~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~ 1370 (1623)
+...+|++++||+|+| .+|+.|+++|+.+.. ..++++.. ++ ..++++.+ |++ ...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~--gL~~~~~~ 171 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM--GLDDSYLE 171 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc--CCChhHhc
Confidence 3567889999999998 689999999996431 12333321 22 23444443 664 4567
Q ss_pred cCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeC
Q 000351 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 1448 (1623)
Q Consensus 1371 e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1448 (1623)
+.+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 7788999999999999999999999999999999999999999999998764 57899999999998855 999999999
Q ss_pred ceEeeecChhHHhhc
Q 000351 1449 GRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1449 G~ive~Gtp~eLl~~ 1463 (1623)
|++++.|+|+++..+
T Consensus 252 G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 252 GKILKTGTPYEIFTD 266 (320)
T ss_pred CEEEEeCCHHHHhcC
Confidence 999999999999754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=363.45 Aligned_cols=212 Identities=29% Similarity=0.437 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC---hHHhhh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~---~~~lR~ 1314 (1623)
.|+++||+.+|+.+ ..+|+||||+|++||.|+|+||||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999644 58999999999999999999999999999999999999999999999999999888 556788
Q ss_pred ceEEEcCCCccccc-cHHhhcCC------------CCCCCH---HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCCh
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDP------------FSEHSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1378 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~g-TIr~NLd~------------~~~~sd---~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSg 1378 (1623)
+||+|+|.+.|-+. |+-+|+.. |+-.+. ....++|+++++.+..-. +.++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999998865 99999731 233333 346777888887665433 3468999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1379 GQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
||+||++|||||.++|+|++-|||+|+|||.+.+.+++.|++.. .|.|||+.-|.++...+ ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999875 47999999999999987 9999999999999999
Q ss_pred ChhHHh
Q 000351 1456 TPEELL 1461 (1623)
Q Consensus 1456 tp~eLl 1461 (1623)
+++||-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=385.87 Aligned_cols=212 Identities=30% Similarity=0.465 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh---HHhhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~---~~lR~~ 1315 (1623)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999964 369999999999999999999999999999999999999999999999999987764 567889
Q ss_pred eEEEcCCCccccc-cHHhhcCCC----CCCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHH
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPF----SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1386 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~----~~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaL 1386 (1623)
++|+||++.+|.+ |+++|+... ...+.+ ++.++++..++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 9999999999986 999999642 112222 34445555544333 333445799999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1387 ARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998653 7899999999999877 999999999999999999998753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=384.30 Aligned_cols=211 Identities=32% Similarity=0.509 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccc-----cCCCcEEEECCEecCCCC--hHH
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG--LMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~-----~p~~G~I~IdG~di~~i~--~~~ 1311 (1623)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.++|.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999653 6999999999999999999999999999999999999 999999999999998776 567
Q ss_pred hhhceEEEcCCCccccccHHhhcCCCC---C-CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1312 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~-~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
+|++++|+||++.+|..|+++|+.... . .. ++++.++++..++.+...+.+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788999999999999789999996421 1 11 2345556666555443332210 46899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
++|||||+++|++|||||||++||+++.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987655899999999999876 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=378.47 Aligned_cols=215 Identities=29% Similarity=0.495 Sum_probs=194.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecC-CCChHHhhhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~-~i~~~~lR~~i 1316 (1623)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999876 68999999999999999999999999999999999999999999999999998 47889999999
Q ss_pred EEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1317 GIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1317 ~~vpQdp--~Lf~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
|+|.|+| .+|..||.+.+.+.. ..+. +.+.++|+.+++.++.++.| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999987543 2233 44777888888877755544 57999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
.+|..+|+|||||||||+||+...+.+.+.+++..+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999999764 4799999999999988 9999999999999999999988653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=350.87 Aligned_cols=207 Identities=28% Similarity=0.438 Sum_probs=187.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---hhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR~~ 1315 (1623)
|+|+||+++|+.+ +++|+||||+|++||.+-|+|||||||||++++|++...|+.|+|.++|.|++++..++ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999876 68999999999999999999999999999999999999999999999999999887665 7999
Q ss_pred eEEEcCCCccccc-cHHhhcCC-CC------CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDP-FS------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~-~~------~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
||+|+||.-|... ||.||+.+ .. ..-.+++.++|+.+||.+-...+| ..|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999988765 99999963 11 112456889999999999988887 47999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecCh
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp 1457 (1623)
||++.+|++||-||||-+||+++...|++.+.+.. .|.|||+.||+.+.+.+ --|++.+++|+++....+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999999875 58999999999999988 679999999999987654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=381.13 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=188.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCccccccHHhhcCCCCC---CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1318 IIPQSPVLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1318 ~vpQdp~Lf~gTIr~NLd~~~~---~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
|+||+|.+|+.|+++|+..... ..++++.+.++..++.+ .........||||||||++||||++++|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999974321 12234444454444321 2334456789999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHH
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~ 1469 (1623)
++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++...+...|.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999864 37899999999999876 999999999999999999999865443343
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=384.17 Aligned_cols=225 Identities=22% Similarity=0.365 Sum_probs=201.6
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
.|+++|++++|+.+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++| .+.+. ..
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G-~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-DIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEhhhCCHHHHhhh
Confidence 48999999999642 4579999999999999999999999999999999999997 677 44432 35
Q ss_pred EEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
|+||||+|++|++||++|+....+++++++.++++.+++.+.++.+|++++|.++++|.+||||||||++||||++++|+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997444567788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHhHHhh
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 840 (1623)
|+||||||++||+.+.+.+.+.+.. ..+++|+|+|||+++++..||+|++|++|++++.|+++++.++...++.++.+.
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 9999999999999999988876553 446899999999999998899999999999999999999999888888887665
Q ss_pred cc
Q 000351 841 GK 842 (1623)
Q Consensus 841 ~~ 842 (1623)
+.
T Consensus 238 ~~ 239 (275)
T cd03289 238 DR 239 (275)
T ss_pred ch
Confidence 43
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=382.44 Aligned_cols=218 Identities=24% Similarity=0.416 Sum_probs=189.8
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc---CCCcEEEECCEecCCCChHHhhh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~---p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.+.+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999964 369999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ceEEEcCCCccccccHHhhcCCCC---C------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPFS---E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~~---~------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
+++|+||+|.+|+.|+++|+.... . ..++++.++++.+++.+++.. ...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 999999999999999999996431 1 112345566666666544332 234556789999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999987778999999999999876 9999999999999999999987643
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=391.60 Aligned_cols=218 Identities=28% Similarity=0.426 Sum_probs=196.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|++ ..+++|+||+|++||.+.++|||||||||++++|.|+..|++|+|.+||.|+..++++ ++.|+
T Consensus 5 ~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 5999999999983 3799999999999999999999999999999999999999999999999999999885 67899
Q ss_pred EEcCCCccccc-cHHhhcCCCCC----CCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~----~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+|+|+..||+. ||++|+.+.-. ..+ +.+.++|+.+++.++-.+.| ..|||||+||+||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999976 99999974322 222 36888999999988877776 479999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCC
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~ 1465 (1623)
||..+|++|+||||-|+||.+-...++.-|++.. .|.|.|.|||+-++... +|||+||++|+|...|+|+|+..++.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 9999999999999999999999999999988765 37899999999998766 99999999999999999999998887
Q ss_pred ChHHH
Q 000351 1466 SSFSK 1470 (1623)
Q Consensus 1466 ~~f~~ 1470 (1623)
+.|-.
T Consensus 230 ~~fVA 234 (352)
T COG3842 230 TRFVA 234 (352)
T ss_pred hHHHH
Confidence 66643
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=398.51 Aligned_cols=217 Identities=22% Similarity=0.393 Sum_probs=189.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+++ .++|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.++++. +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999422 3699999999999999999999999999999999999999999999999999987764 47899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
||||++.+|+. ||++|+.+.. ..+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997421 122 234566777777766655543 5799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
|+++|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999998754 7899999999998876 999999999999999999999887654
Q ss_pred hH
Q 000351 1467 SF 1468 (1623)
Q Consensus 1467 ~f 1468 (1623)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=398.36 Aligned_cols=217 Identities=25% Similarity=0.409 Sum_probs=189.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...++ .+++++
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999964 369999999999999999999999999999999999999999999999999988765 357899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
||+|++.+|+. |+++|+.+.. ..+ ++++.++++..++.++..+. ...||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999976 9999997421 122 34556667776665544333 45799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
|+++|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++++.. ||||+||++|+|++.|+|+++.+++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998754 7899999999999876 999999999999999999999987765
Q ss_pred hHH
Q 000351 1467 SFS 1469 (1623)
Q Consensus 1467 ~f~ 1469 (1623)
.|.
T Consensus 231 ~~~ 233 (351)
T PRK11432 231 RFM 233 (351)
T ss_pred hHH
Confidence 443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=363.68 Aligned_cols=204 Identities=29% Similarity=0.417 Sum_probs=173.3
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---h-
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L- 1312 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---l- 1312 (1623)
++++||++.|..+. .++|+++||+|++||.|+|+||||||||||+++|-++..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 36999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hhceEEEcCCCccccc-cHHhhcCC---CCCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1313 RKILGIIPQSPVLFSG-TVRFNLDP---FSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~g-TIr~NLd~---~~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
|++||+|+|+..|++. |++||+.. +.... ++...+.++.+++.+.... .....||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 4569999999999876 99999972 22222 2334445555565544331 23457999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhccCEEEEEeCceEe
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 1452 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~iv 1452 (1623)
||||||+.+|+|++.||||.+||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999875 378999999999999999999999999954
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=376.43 Aligned_cols=216 Identities=34% Similarity=0.549 Sum_probs=196.1
Q ss_pred CccEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhh
Q 000351 1236 SGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
.|.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+....|+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4679999999999642 236999999999999999999999999999999999999999999999999998887778888
Q ss_pred ceEEEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~gTIr~NLd~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
+++|+||++.+|++|+++|++.. ......++.+..+..++.++++.+|.|+++.+.+...+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999843 22344556666677788899999988999989998999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceE
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1451 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1451 (1623)
|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998777999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=398.67 Aligned_cols=220 Identities=28% Similarity=0.460 Sum_probs=186.6
Q ss_pred EEEEEEEEEeCC--CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---hh
Q 000351 1239 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR 1313 (1623)
|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 1246999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hceEEEcCCCcccc-ccHHhhcCCC---CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1314 KILGIIPQSPVLFS-GTVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~-gTIr~NLd~~---~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
++|+|+||++.+|. .|+++|+... ...++ +++.++++..++ +........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL-----------SDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 88999999999986 5999999642 12222 233444444444 43344445689999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999887 99999999999999999999987
Q ss_pred cCCChHH
Q 000351 1463 NEGSSFS 1469 (1623)
Q Consensus 1463 ~~~~~f~ 1469 (1623)
++...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6544343
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=388.04 Aligned_cols=215 Identities=29% Similarity=0.443 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1238 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
.|+++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCCc--cccccHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1317 GIIPQSPV--LFSGTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1317 ~~vpQdp~--Lf~gTIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+|+||+|. ++..||++||.+.. ..+ ++.+.++++.+++.++.++. ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999983 56679999997421 122 23466677776666554443 357999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999977999999999999999999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=364.06 Aligned_cols=197 Identities=26% Similarity=0.372 Sum_probs=174.8
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.+++++|+++|+. ..||+||||+|++||.|+|+||||||||||++++.|+..|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999976 3799999999999999999999999999999999999999999999999988543 45799
Q ss_pred EEcCCCccccc-cHHhhcCCCCCC-------CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~~-------sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
||+|++.||+- ||++|+...-+. ..+.+.+.|+.+||.+|-++.| ..||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999998 999999632211 2345788889999988887776 4799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeC--ceEe
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVL 1452 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~--G~iv 1452 (1623)
|+.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||++++... +|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999998865 35999999999999776 999999998 5553
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=397.83 Aligned_cols=217 Identities=24% Similarity=0.386 Sum_probs=187.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.++. +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~-gTIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
||||++.+|+ .||++|+.+.. ..+ ++++.++++..+ ++........+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~-----------L~~~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-----------LPGSERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CCchhhCChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999997421 112 223444455544 4444445556899999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
|+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999998754 7899999999999876 999999999999999999999987665
Q ss_pred hHH
Q 000351 1467 SFS 1469 (1623)
Q Consensus 1467 ~f~ 1469 (1623)
.|.
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=380.86 Aligned_cols=220 Identities=25% Similarity=0.407 Sum_probs=189.0
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CC
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FG 1308 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~ 1308 (1623)
.+.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 456999999999964 369999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHHhhhceEEEcCCCccccccHHhhcCCCC----CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhH
Q 000351 1309 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380 (1623)
Q Consensus 1309 ~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~----~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQ 1380 (1623)
...+|++++|+||++.+|+.|+++|+.... ..+ ++++.++++.+++.+.+ ....++...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 667889999999999999999999996421 122 23456666666653322 234455667899999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhH
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~e 1459 (1623)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988667899999999999876 99999999999999999999
Q ss_pred HhhcC
Q 000351 1460 LLSNE 1464 (1623)
Q Consensus 1460 Ll~~~ 1464 (1623)
+...+
T Consensus 242 ~~~~~ 246 (260)
T PRK10744 242 IFTKP 246 (260)
T ss_pred HHhCC
Confidence 87644
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=339.15 Aligned_cols=210 Identities=29% Similarity=0.435 Sum_probs=187.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|.+++|.++|... + =.++++|++||++||+||||||||||++++.|+..|.+|+|.|+|+|....++ .++-+++
T Consensus 2 l~L~~V~~~y~~~-~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred ccccceEEeeCcc-e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 5788999999642 2 36789999999999999999999999999999999999999999999988777 4567999
Q ss_pred EcCCCccccc-cHHhhcCCC----CC---CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPF----SE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~----~~---~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
++||..||.. ||++|+... -. ...+.+..++.++|+.++.+++|. .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999987 999999632 22 234568899999999999999984 6999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCC
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~ 1465 (1623)
+|+-+||+||||.|+||+.-...|...+.+.. ++.|+++|||..+.+.. +||++++++|||...|+.+++++..+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999988765 46899999999999877 99999999999999999999987543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=385.60 Aligned_cols=212 Identities=27% Similarity=0.407 Sum_probs=185.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 36999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1318 IIPQSP--VLFSGTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1318 ~vpQdp--~Lf~gTIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
|+||+| .++..|+++|+.+.. ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 678889999997421 122 234566677777665544433 479999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
||+.+|++|||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999874 47899999999999865 9999999999999999997643
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=379.85 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=187.8
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999964 3699999999999999999999999999999999999997 48999999999863 3445
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCC----CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~----~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
..|++++|+||++.+|+.|+++|+.+.. ..+ ++.+.++++.+++.+.+. ........+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHHHH
Confidence 6788999999999999899999996421 111 344566677766643332 1233345689999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999999998
Q ss_pred hcCCC
Q 000351 1462 SNEGS 1466 (1623)
Q Consensus 1462 ~~~~~ 1466 (1623)
+++..
T Consensus 238 ~~~~~ 242 (254)
T PRK14273 238 FNPKN 242 (254)
T ss_pred hCCCC
Confidence 66543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=374.25 Aligned_cols=210 Identities=27% Similarity=0.425 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++||+++|+++..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999965324699999999999999999999999999999999999999999999999998764 3567888999
Q ss_pred EcCCCccc-cccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLF-SGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf-~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+| ..|+++|+.... ..+. +++.++++..++.+. ......+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHHH
Confidence 99999998 569999996321 1122 234455555554333 3333457999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998777999999999999976 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=386.28 Aligned_cols=216 Identities=28% Similarity=0.469 Sum_probs=183.9
Q ss_pred EEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC--hHHhh
Q 000351 1239 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~--~~~lR 1313 (1623)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999996432 36999999999999999999999999999999999999999999999999998753 45788
Q ss_pred hceEEEcCCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1314 KILGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1314 ~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
++++||||+| .+|+.|+++|+.+.. ..+++ ++.++++.+++. ..+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 578899999997421 22333 344455554442 01334455578999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999987
Q ss_pred hc
Q 000351 1462 SN 1463 (1623)
Q Consensus 1462 ~~ 1463 (1623)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=379.84 Aligned_cols=218 Identities=24% Similarity=0.399 Sum_probs=187.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4999999999964 369999999999999999999999999999999999975 589999999999875 3455
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC----CCC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF----SEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||++.+|+.|+++|+... +.. .++++.++++.+++.+.+. ...+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHH
Confidence 678899999999999989999999632 111 1344666677766644332 2334556789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999987
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
+.+
T Consensus 237 ~~~ 239 (253)
T PRK14242 237 TRP 239 (253)
T ss_pred cCC
Confidence 643
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=377.32 Aligned_cols=219 Identities=29% Similarity=0.493 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC-----CcEEEECCEecCCC--ChHH
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~-----~G~I~IdG~di~~i--~~~~ 1311 (1623)
|+++||+++|++. ++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999643 6999999999999999999999999999999999999998 99999999998763 3556
Q ss_pred hhhceEEEcCCCccccccHHhhcCCC---CC-CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1312 LRKILGIIPQSPVLFSGTVRFNLDPF---SE-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~gTIr~NLd~~---~~-~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
.|++++|+||++.+|+.|+++|+... .. .+ ++++.++++..++.+.+. ........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 78899999999999999999999631 11 11 233555566655542221 23444557899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999876
Q ss_pred cCCC
Q 000351 1463 NEGS 1466 (1623)
Q Consensus 1463 ~~~~ 1466 (1623)
++..
T Consensus 233 ~~~~ 236 (247)
T TIGR00972 233 NPKE 236 (247)
T ss_pred CCCC
Confidence 5433
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=376.43 Aligned_cols=211 Identities=27% Similarity=0.423 Sum_probs=180.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876553 3678999
Q ss_pred EcCCCcccc-ccHHhhcCCCCC---C----CH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHH
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFSE---H----SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1386 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~~---~----sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaL 1386 (1623)
+||+|.+|. .|+++|+..... . .. +++.++++..++ +........+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----------DWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHH
Confidence 999999986 599999974311 1 11 223344444444 333444456899999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1387 ARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998653 7899999999998876 999999999999999999998754
Q ss_pred C
Q 000351 1464 E 1464 (1623)
Q Consensus 1464 ~ 1464 (1623)
.
T Consensus 228 ~ 228 (239)
T cd03296 228 P 228 (239)
T ss_pred C
Confidence 3
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=377.21 Aligned_cols=221 Identities=29% Similarity=0.478 Sum_probs=183.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~ 1317 (1623)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999988776654 56799
Q ss_pred EEcCCCccccc-cHHhhcCCCCC-CCHHHH-------HHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSE-HSDADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~-~sd~~i-------~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
|+||++.+|.+ |+++|+..... .....+ ...-....+.+.++.+ |++.........||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999987 99999963211 000000 0000111233444443 5665566667789999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 9999999999999999999999999999999865 57899999999999977 999999999999999999998653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=396.31 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=180.0
Q ss_pred CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh----hhceEEEcCCCccccc
Q 000351 1253 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG 1328 (1623)
Q Consensus 1253 ~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l----R~~i~~vpQdp~Lf~g 1328 (1623)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+...+ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 369999999999999999999999999999999999999999999999999999998887 7789999999999975
Q ss_pred -cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEe
Q 000351 1329 -TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400 (1623)
Q Consensus 1329 -TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLD 1400 (1623)
||++|+.... ..+ ++++.++++.+++.++.. ....+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-----------~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-----------RYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999996321 122 244566666666655444 444579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHH
Q 000351 1401 EATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1401 EpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~ 1469 (1623)
||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999999864 37999999999998766 999999999999999999999987655444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=377.89 Aligned_cols=211 Identities=30% Similarity=0.456 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC---hHHhhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~---~~~lR~~ 1315 (1623)
|+++||+++|+.+ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 36999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred eEEEcCCCcccc-ccHHhhcCCCC------------CCC---HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChh
Q 000351 1316 LGIIPQSPVLFS-GTVRFNLDPFS------------EHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1379 (1623)
Q Consensus 1316 i~~vpQdp~Lf~-gTIr~NLd~~~------------~~s---d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgG 1379 (1623)
++|+||++.+|. .|+++|+.... ..+ ++++.++++.. |++.........||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCHH
Confidence 999999999887 59999996311 011 22333444444 3444445556789999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecC
Q 000351 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1380 QrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gt 1456 (1623)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999875 37899999999999985 99999999999999999
Q ss_pred hhHHh
Q 000351 1457 PEELL 1461 (1623)
Q Consensus 1457 p~eLl 1461 (1623)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 99874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=373.95 Aligned_cols=216 Identities=29% Similarity=0.447 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~ 1317 (1623)
|+++||+++|+.. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 5789999999643 69999999999999999999999999999999999999999999999999988776654 66799
Q ss_pred EEcCCCccccc-cHHhhcCCCCCC-CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~~-sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
|+||++.+|.+ |+++|+...... ...+..+ .+.+.++.+ .+++.........||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELF-PRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHH-HhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 999999643211 1111111 111222222 123444455566899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
+|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999875 47899999999999877 99999999999999999988753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=383.93 Aligned_cols=215 Identities=28% Similarity=0.453 Sum_probs=188.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999643346999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1318 IIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1318 ~vpQdp--~Lf~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
|+||+| .+++.|+++||.... ..+. +++.++++..++.+++.+. ...||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 466789999997421 1222 3355666666666555444 3579999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 7899999999999988999999999999999999998753
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=372.84 Aligned_cols=202 Identities=29% Similarity=0.418 Sum_probs=173.9
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH---Hhhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~---~lR~~ 1315 (1623)
|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964333699999999999999999999999999999999999999999999999999876543 46789
Q ss_pred eEEEcCCCccccc-cHHhhcCCC---CCC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPF---SEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~---~~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
++|+||+|.+|.. |+++|+... ... .++++.++++..++.++..+. ..+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHHH
Confidence 9999999998864 999999632 111 234566677777665554433 357999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceE
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1451 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1451 (1623)
|||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999976 999999999985
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=393.28 Aligned_cols=216 Identities=25% Similarity=0.414 Sum_probs=186.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...++ .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCCccccc-cHHhhcCCCC-------CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS-------EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~-------~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
||||++.+|+. |+++|+.+.. ..+ ++++.++++..++.++..+ ....||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 99999999975 9999997421 112 2345556666666544433 34579999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|+++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998764 6899999999999877 99999999999999999999987
Q ss_pred cCCChH
Q 000351 1463 NEGSSF 1468 (1623)
Q Consensus 1463 ~~~~~f 1468 (1623)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 765433
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=389.11 Aligned_cols=213 Identities=30% Similarity=0.462 Sum_probs=182.8
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
..|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 35999999999964 36999999999999999999999999999999999999999999999999998754 4578999
Q ss_pred EEEcCCCcccc-ccHHhhcCCCCC---CCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1317 GIIPQSPVLFS-GTVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1317 ~~vpQdp~Lf~-gTIr~NLd~~~~---~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
||+||++.+|. .|+++|+..+.. .++. ++.++++.+++. ........+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-----------NKADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hHhcCchhhCCHHHHHHHHHHH
Confidence 99999999986 599999974321 2222 233344444332 2233333579999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||+.+|++|+|||||++||+.+.+.+++.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999977 999999999999999999999765
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=380.06 Aligned_cols=220 Identities=23% Similarity=0.429 Sum_probs=188.2
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CC
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FG 1308 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~ 1308 (1623)
...|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 3469999999999643 69999999999999999999999999999999999987 589999999999863 45
Q ss_pred hHHhhhceEEEcCCCccccccHHhhcCCCCC---C---CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1309 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1309 ~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~---~---sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
...+|++++|+||++.+|..|+++|+..... . .++++.++++.+++.+. ++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 6778889999999999998899999974321 1 13445566666655432 233344556789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeC-----------ce
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-----------GR 1450 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----------G~ 1450 (1623)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988667899999999999876 999999996 67
Q ss_pred EeeecChhHHhhcC
Q 000351 1451 VLEYDTPEELLSNE 1464 (1623)
Q Consensus 1451 ive~Gtp~eLl~~~ 1464 (1623)
++|.|+++++..++
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999998644
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=395.08 Aligned_cols=219 Identities=24% Similarity=0.397 Sum_probs=188.4
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCC--cEEEECCEecCCCChHHhh
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER--GRILIDGFDIAKFGLMDLR 1313 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~--G~I~IdG~di~~i~~~~lR 1313 (1623)
.|.|+++||+++|+.. .+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 4679999999999743 69999999999999999999999999999999999999999 999999999987665 35
Q ss_pred hceEEEcCCCccccc-cHHhhcCCC---CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1314 KILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~g-TIr~NLd~~---~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
++|++|+|++.+|.. ||++|+.+. ...++ +++.++++..++.++. .....+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHH
Confidence 789999999999976 999999732 11232 2345555555554444 3344689999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~---~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|||||+++|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988654 6899999999999876 9999999999999999999999
Q ss_pred hcCCChHH
Q 000351 1462 SNEGSSFS 1469 (1623)
Q Consensus 1462 ~~~~~~f~ 1469 (1623)
+++...|-
T Consensus 228 ~~p~~~~~ 235 (362)
T TIGR03258 228 DAPADGFA 235 (362)
T ss_pred hCcCcHHH
Confidence 87655443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=379.90 Aligned_cols=221 Identities=25% Similarity=0.426 Sum_probs=188.8
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCC--C
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--F 1307 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~--i 1307 (1623)
+.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3457999999999964 3699999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChHHhhhceEEEcCCCccccccHHhhcCCCC---CC--C----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCCh
Q 000351 1308 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1378 (1623)
Q Consensus 1308 ~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~~--s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSg 1378 (1623)
+...+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+. ........+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 4567788999999999999889999996321 11 1 234566666666644332 233455678999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecCh
Q 000351 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1379 GQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp 1457 (1623)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999976 999999999999999999
Q ss_pred hHHhhcC
Q 000351 1458 EELLSNE 1464 (1623)
Q Consensus 1458 ~eLl~~~ 1464 (1623)
+++..++
T Consensus 247 ~~~~~~~ 253 (267)
T PRK14235 247 EKMFTNP 253 (267)
T ss_pred HHHHhCC
Confidence 9987543
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=376.56 Aligned_cols=214 Identities=28% Similarity=0.455 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999752 369999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcch--hhhcCCCCCChhHHHHHHHHH
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDA--QVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt--~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+||+|.+|. .|+++|+.... ..+ ++++.++++.. |++. ...+...+||||||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALV-----------GLDPAEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCCcHHHHhcChhhCCHHHHHHHHHHH
Confidence 999999996 59999996421 111 12233334433 3432 345556789999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
|++++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.++.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 99999999999999999999999999999998753 7999999999998866 9999999999999999999987543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=377.16 Aligned_cols=211 Identities=29% Similarity=0.421 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh---HHhhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~---~~lR~~ 1315 (1623)
|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999622 369999999999999999999999999999999999999999999999999987654 346888
Q ss_pred eEEEcCCCcccc-ccHHhhcCCCCC------------CC---HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChh
Q 000351 1316 LGIIPQSPVLFS-GTVRFNLDPFSE------------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1379 (1623)
Q Consensus 1316 i~~vpQdp~Lf~-gTIr~NLd~~~~------------~s---d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgG 1379 (1623)
++|+||++.+|. .|+++|+..... .. ++++.++++..+ ++........+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG-----------LADKAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCHH
Confidence 999999999886 599999963110 01 223444444444 444444556789999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecC
Q 000351 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1380 QrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gt 1456 (1623)
||||++|||||+++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999874 27899999999999866 99999999999999999
Q ss_pred hhHHh
Q 000351 1457 PEELL 1461 (1623)
Q Consensus 1457 p~eLl 1461 (1623)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=377.10 Aligned_cols=219 Identities=27% Similarity=0.443 Sum_probs=187.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCCChHHh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i~~~~l 1312 (1623)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 3899999999964 3699999999999999999999999999999999999974 69999999999988888888
Q ss_pred hhceEEEcCCCccc-cccHHhhcCCCC---C--CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1313 RKILGIIPQSPVLF-SGTVRFNLDPFS---E--HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf-~gTIr~NLd~~~---~--~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
|++++|+||+|.+| +.|+++|+.... . .. ++++.++++.+++.+.+. ........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 99999999999765 569999996321 1 01 234566677666543221 1233445679999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999865 9999999999999999999997
Q ss_pred hcCC
Q 000351 1462 SNEG 1465 (1623)
Q Consensus 1462 ~~~~ 1465 (1623)
+++.
T Consensus 234 ~~~~ 237 (250)
T PRK14247 234 TNPR 237 (250)
T ss_pred cCCc
Confidence 6543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=370.77 Aligned_cols=202 Identities=27% Similarity=0.423 Sum_probs=172.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999986543 4678999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+ .......+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-----------LLNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999996321 111 123444555544443 33444467999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999999876 9999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=384.69 Aligned_cols=214 Identities=24% Similarity=0.402 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC----CChHH
Q 000351 1239 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~----i~~~~ 1311 (1623)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhhceEEEcCCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1312 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1312 lR~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
+|++++||+|+| .+|..|+.+|+.+.. ..+.+ ++.++++.+++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 889999999998 788899999996421 12222 2344444444421 2234455789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+|+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998764 47899999999999865 999999999999999999998
Q ss_pred hh
Q 000351 1461 LS 1462 (1623)
Q Consensus 1461 l~ 1462 (1623)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 75
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=359.30 Aligned_cols=190 Identities=29% Similarity=0.459 Sum_probs=167.5
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC--------cEEEEc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--------TVAYVP 685 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~--------~iay~~ 685 (1623)
.++++++++.|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++| .+.+.+ .+|||+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G-~V~~~g~~v~~p~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG-EVLLDGRPVTGPGPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCcccCCCCCCEEEEe
Confidence 5899999999974 6799999999999999999999999999999999999999999 554433 699999
Q ss_pred cCcccCc-ccHHHHHhcCCCCC-------HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhc
Q 000351 686 QVSWIFN-ATVRDNILFGSAFE-------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757 (1623)
Q Consensus 686 Q~~~l~~-~Tv~enI~~g~~~~-------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~ 757 (1623)
|++-|+. .||+|||.|+.+.. .++..+.++.++|...-+..|+ .|||||||||||||||..
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALAT 147 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhc
Confidence 9998874 89999999985531 3467788899999988888885 899999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeC--CEEE
Q 000351 758 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHE--GMVK 818 (1623)
Q Consensus 758 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~ 818 (1623)
+|+|+||||||+|||+.|+..+.+.+.+.+.+ ++|+++||||+++.- .+|||++|.+ |+|.
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999988875543 899999999999864 5899999998 5553
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=378.23 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=185.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecC--CCChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--KFGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~--~i~~~ 1310 (1623)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3699999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HhhhceEEEcCCCccccc-cHHhhcCCC---CCC--C----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhH
Q 000351 1311 DLRKILGIIPQSPVLFSG-TVRFNLDPF---SEH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~g-TIr~NLd~~---~~~--s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQ 1380 (1623)
.+|++++|+||++.+|.+ |+++|+... ... . ++++.++++..++.+.+. ........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHHH
Confidence 788899999999999976 999999632 111 1 133555566655533221 22344567899999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhH
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~e 1459 (1623)
|||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988677999999999999876 99999999999999999999
Q ss_pred HhhcC
Q 000351 1460 LLSNE 1464 (1623)
Q Consensus 1460 Ll~~~ 1464 (1623)
+.+++
T Consensus 235 ~~~~~ 239 (253)
T PRK14267 235 VFENP 239 (253)
T ss_pred HHhCC
Confidence 87643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=382.46 Aligned_cols=218 Identities=22% Similarity=0.407 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC----ChHH
Q 000351 1239 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i----~~~~ 1311 (1623)
|+++||+++|+++. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996432 3699999999999999999999999999999999999999999999999999754 3457
Q ss_pred hhhceEEEcCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcch-hhhcCCCCCChhHHHHHH
Q 000351 1312 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1312 lR~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt-~v~e~G~~LSgGQrQrLa 1385 (1623)
+|++|+||||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++. .|+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 889999999998 588889999996421 1233222221 2233333 36653 345567889999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 47999999999999865 99999999999999999999875
Q ss_pred c
Q 000351 1463 N 1463 (1623)
Q Consensus 1463 ~ 1463 (1623)
+
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=374.29 Aligned_cols=214 Identities=30% Similarity=0.475 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---hh
Q 000351 1239 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR 1313 (1623)
|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 126999999999999999999999999999999999999999999999999998776543 47
Q ss_pred hceEEEcCCCcccc-ccHHhhcCCC---CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1314 KILGIIPQSPVLFS-GTVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~-gTIr~NLd~~---~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+ .......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-----------KADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhcChhhCCHHHHHHHH
Confidence 88999999999997 5999999631 1112 223445555554443 334445689999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998653 7899999999999876 99999999999999999998865
Q ss_pred c
Q 000351 1463 N 1463 (1623)
Q Consensus 1463 ~ 1463 (1623)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=396.14 Aligned_cols=213 Identities=27% Similarity=0.440 Sum_probs=189.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 3899999999964 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHHhhcCCCC-----------CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1318 IIPQSPVL-FSGTVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1318 ~vpQdp~L-f~gTIr~NLd~~~-----------~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
++||++.+ |+.|+++|+.... ...++.+.++++.+++.++..+ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 5779999996321 1123457778888777665433 23579999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 47899999999999966 999999999999999999998753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=393.11 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+++ +++++
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999887764 56899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
||+|++.+|+. ||++|+.+.- ..++ +++.++++..++.++..+.| ..||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999997421 1222 34566677767666655544 5799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
|+++|++||||||||+||..+.+.+.+.|++..+ +.|+|+|||+.+.+.. ||||++|++|+|++.|+|+++..++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998764 7899999999999876 999999999999999999999987655
Q ss_pred hH
Q 000351 1467 SF 1468 (1623)
Q Consensus 1467 ~f 1468 (1623)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 44
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=395.00 Aligned_cols=216 Identities=23% Similarity=0.355 Sum_probs=185.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 38999999999643 69999999999999999999999999999999999999999999999999987665 356899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
||||++.+|.. |+++|+.+.. ..+ ++++.++++..++.++.. ....+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 9999997421 122 234555666665544433 3345799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
|+++|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999876 999999999999999999999876554
Q ss_pred hH
Q 000351 1467 SF 1468 (1623)
Q Consensus 1467 ~f 1468 (1623)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 43
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=363.83 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=182.1
Q ss_pred EEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhc
Q 000351 1239 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1315 (1623)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1316 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1316 i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
|+|+||+|.+|++|+++|+.+....++++..++++.+++.+++..+|.|+++.+.+...+||+|||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998755556677888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCcEEEEeecCchhhhccCEEEEEeCce
Q 000351 1396 ILVLDEATAAVDVRTDALIQK-TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 1450 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~-~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1450 (1623)
++||||||++||+++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888876 566554 3689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=382.21 Aligned_cols=213 Identities=30% Similarity=0.495 Sum_probs=183.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecC--CCChHHhhhc
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 1315 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~--~i~~~~lR~~ 1315 (1623)
.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 36999999999999999999999999999999999999999999999999984 3445678899
Q ss_pred eEEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHH
Q 000351 1316 LGIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1386 (1623)
Q Consensus 1316 i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaL 1386 (1623)
++|+||+| .+|+.|+++|+.... ..+. +.+.++++..++.+ .......+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHHH
Confidence 99999998 578899999996421 1232 23444555555543 3444567899999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1387 ARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|++++.|+++++++
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998754 7899999999999975 99999999999999999999875
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=346.83 Aligned_cols=472 Identities=19% Similarity=0.238 Sum_probs=332.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCchhHHHHHhcccchhhhhhHHHHHHH
Q 000351 956 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 1035 (1623)
Q Consensus 956 ~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~ 1035 (1623)
++..++.+...-.+.+.+........+.+.-.+++.++.++++.+|+.-+++...++++.++++|+..|.-.. ..+..+
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~ 128 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPEL 128 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHH
Confidence 3333444444445555666777888899999999999999999999999999999999999999999998333 334456
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHH
Q 000351 1036 MGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 1115 (1623)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~ 1115 (1623)
.+.....+++.+..++.+|.+..+.+..+++.++...+.++..-+--+...+....++.+++.-+.|.+..+..+...+.
T Consensus 129 ~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~ 208 (546)
T COG4615 129 VQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY 208 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH
Confidence 67777778888888888887766555544444443333322222222223345567888999999999988776543322
Q ss_pred --HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 000351 1116 --ADINGK----SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSL 1189 (1623)
Q Consensus 1116 --~~~~~~----~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~ 1189 (1623)
.+.+.. .-+...+..........|..+.+-.+.++.+++...... .+.. .+.. .....+.+-.+
T Consensus 209 ~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~----~a~t---ivlvlLflr~p 278 (546)
T COG4615 209 VHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTN----VAAT---IVLVLLFLRTP 278 (546)
T ss_pred HHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhh----HHHH---HHHHHHHHhhH
Confidence 222211 111222222222344566665544333333322221111 0000 0111 11222334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCCCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEE
Q 000351 1190 LTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKV 1269 (1623)
Q Consensus 1190 l~~~~~~~~~~e~~~~aveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~Gekv 1269 (1623)
+..++.....+-...+|..++.++...|..+. .....+.|+|. .|+++||.|+|.+.. --+..||++|++||.|
T Consensus 279 L~s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelv 352 (546)
T COG4615 279 LLSAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELV 352 (546)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEE
Confidence 77777777777788889999988766332221 11222333453 599999999997653 4588899999999999
Q ss_pred EEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHH
Q 000351 1270 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL 1349 (1623)
Q Consensus 1270 gIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL 1349 (1623)
-|+|.|||||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++- +-+..+.+.+..-|
T Consensus 353 FliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~L 428 (546)
T COG4615 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWL 428 (546)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987642 33335677777777
Q ss_pred HHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEE
Q 000351 1350 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTM 1427 (1623)
Q Consensus 1350 ~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~Tv 1427 (1623)
++..+....+-. +| ... -..||-|||.|+++--|++.+.+|+++||=-+.-||.-.+...+.+-... .|+||
T Consensus 429 qrLel~~ktsl~-d~---~fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 429 QRLELAHKTSLN-DG---RFS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHhhhhccc-CC---ccc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 776555433322 11 111 13699999999999999999999999999999999999999988765433 58999
Q ss_pred EEeecCchhhhccCEEEEEeCceEeee
Q 000351 1428 LIIAHRLNTIIDCDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1428 I~IaHrl~ti~~~DrI~Vl~~G~ive~ 1454 (1623)
+.|||+-.-...+||++-|++|+++|.
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999986
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=368.30 Aligned_cols=208 Identities=29% Similarity=0.458 Sum_probs=179.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EcCCCccccc-cHHhhcCCC---CCC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPF---SEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~---~~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.++.. |+++|+... ... .++++.++++..++.++..+ ...+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999998875 999999631 111 12345666666666544333 2357999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
+.+|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998653 6899999999999876 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=377.87 Aligned_cols=215 Identities=27% Similarity=0.456 Sum_probs=184.9
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999643347999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEcCCC--ccccccHHhhcCCCC---CCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1318 IIPQSP--VLFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1318 ~vpQdp--~Lf~gTIr~NLd~~~---~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
|+||+| .++..|+++|+.... ..+.++ +.++++..++.+ .......+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-----------YLDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCCcccCCHHHHHHHHHHH
Confidence 999998 455679999996421 123332 334445544443 444455689999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 4899999999999888999999999999999999998753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=363.65 Aligned_cols=206 Identities=27% Similarity=0.435 Sum_probs=174.6
Q ss_pred cEEEEeeEEEcCCC--CCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE---------------
Q 000351 614 AISIRNGYFSWDSK--AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 676 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~--~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 676 (1623)
.|+++++++.|... ....+|+||||+|++||+.||+|+||+|||||++++.++..|++|....
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 37899999999852 1246999999999999999999999999999999999999999994322
Q ss_pred EcCcEEEEccCcccCc-ccHHHHHhcCCC---CC-H---HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 677 IRGTVAYVPQVSWIFN-ATVRDNILFGSA---FE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 677 ~~~~iay~~Q~~~l~~-~Tv~enI~~g~~---~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
.|.+||+++|++-|++ .||.+||.|..+ .+ . ++..+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 2346999999999985 899999998643 22 2 33444566677776666655 5899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 826 (1623)
|+|||||..+|+|||.|||||||||+|.+.|.+.+..- ..-|-|+++|||.++.++. ||||.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999999866553 3348999999999999985 899999999999999999999
Q ss_pred hhcC
Q 000351 827 SNNG 830 (1623)
Q Consensus 827 ~~~~ 830 (1623)
..++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=371.57 Aligned_cols=215 Identities=28% Similarity=0.440 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999999876654 4458999
Q ss_pred EcCCCccc-cccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1319 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1319 vpQdp~Lf-~gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
+||++.++ ..|+++|+.... ..+.++.. ..+.++++.+ |++........+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999874 679999996432 12221111 1123344432 5555566666789999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999988999999999999999999998764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=380.17 Aligned_cols=214 Identities=29% Similarity=0.404 Sum_probs=182.1
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh----hhc
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 1315 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l----R~~ 1315 (1623)
.++|++++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567888888643 69999999999999999999999999999999999999999999999999988766543 467
Q ss_pred eEEEcCCCcccc-ccHHhhcCCC---CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLFS-GTVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf~-gTIr~NLd~~---~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
++|+||++.+|. .|+++|+... .... ++++.++++..++.+++.+. ..+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKY-----------PDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 999999999885 5999999631 1111 23455666666665544443 357999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
|||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999999864 37899999999999876 9999999999999999999998655
Q ss_pred CC
Q 000351 1465 GS 1466 (1623)
Q Consensus 1465 ~~ 1466 (1623)
..
T Consensus 253 ~~ 254 (269)
T cd03294 253 AN 254 (269)
T ss_pred Cc
Confidence 43
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=374.85 Aligned_cols=219 Identities=24% Similarity=0.391 Sum_probs=185.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc--C---CCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~--p---~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 48999999999643 69999999999999999999999999999999999997 3 58999999999864 3456
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCC----CCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~----~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||++.+|.+|+++|+.... ..+++ ++.++++..++.+.+. ........+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence 7788999999999999999999996321 11222 2344455555443321 2334556789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999987
Q ss_pred hcCC
Q 000351 1462 SNEG 1465 (1623)
Q Consensus 1462 ~~~~ 1465 (1623)
+++.
T Consensus 243 ~~~~ 246 (259)
T PRK14274 243 SNPD 246 (259)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=373.03 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=186.1
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCC--CCh
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 1309 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~--i~~ 1309 (1623)
|.|+++||+++|++. ++++|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 469999999999643 699999999999999999999999999999999999863 69999999999875 355
Q ss_pred HHhhhceEEEcCCCccccccHHhhcCCCC---C-C----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHH
Q 000351 1310 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---E-H----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1310 ~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~-~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQr 1381 (1623)
..+|++++|+||++.+|+.|+++|+.... . . .++++.++++.+++.+.+ .........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence 67888999999999999999999996421 1 1 123345555555543322 2234455678999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999999876 999999999999999999998
Q ss_pred hhcC
Q 000351 1461 LSNE 1464 (1623)
Q Consensus 1461 l~~~ 1464 (1623)
..++
T Consensus 233 ~~~~ 236 (250)
T PRK14240 233 FTNP 236 (250)
T ss_pred HhCC
Confidence 7554
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=385.03 Aligned_cols=223 Identities=22% Similarity=0.376 Sum_probs=186.6
Q ss_pred cEEEEEEEEEeCCC-----------CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC
Q 000351 1238 SIKFEDVVLRYRPE-----------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 1306 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~-----------~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~ 1306 (1623)
-|+++|++++|+.+ ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999531 2369999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---hhhceEEEcCCC--cccc-ccHHhhcCC----CC-CCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhc
Q 000351 1307 FGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDP----FS-EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSE 1371 (1623)
Q Consensus 1307 i~~~~---lR~~i~~vpQdp--~Lf~-gTIr~NLd~----~~-~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e 1371 (1623)
++... +|++|+||||+| .+++ .||++|+.. +. ..+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 87654 577899999999 4774 699999852 21 233333 344455554421 12344
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeC
Q 000351 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 1448 (1623)
Q Consensus 1372 ~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1448 (1623)
....||||||||++|||||+.+|++||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998653 7899999999999987 999999999
Q ss_pred ceEeeecChhHHhhcCCChHHH
Q 000351 1449 GRVLEYDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1449 G~ive~Gtp~eLl~~~~~~f~~ 1470 (1623)
|+|+|.|+++++.+++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998766544544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=375.70 Aligned_cols=220 Identities=27% Similarity=0.414 Sum_probs=185.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCCC--hH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i~--~~ 1310 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999964 3699999999999999999999999999999999999985 7999999999986532 34
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
.+|+.++|+||++.+|+.|+++|+.... ..+. +++.++++.+++.+.+ +.........||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 6788899999999999999999996321 1222 2345556655543221 223344556899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
++|||||+.+|+||||||||++||+++...+.+.|++..+++|||+|||+++.+.+ ||||++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999876 99999999999999999999976
Q ss_pred cCCC
Q 000351 1463 NEGS 1466 (1623)
Q Consensus 1463 ~~~~ 1466 (1623)
++..
T Consensus 243 ~~~~ 246 (258)
T PRK14268 243 NPRE 246 (258)
T ss_pred CCCC
Confidence 5443
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=374.24 Aligned_cols=214 Identities=29% Similarity=0.501 Sum_probs=182.1
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC----------
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---------- 1308 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~---------- 1308 (1623)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 36999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHhhhceEEEcCCCcccc-ccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCC
Q 000351 1309 ---LMDLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376 (1623)
Q Consensus 1309 ---~~~lR~~i~~vpQdp~Lf~-gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~L 1376 (1623)
...+|++++++||++.+|. .|+++|+... .... ++++.++++..+ ++.........|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG-----------LADKADHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhcChhhc
Confidence 2356889999999999885 6999999641 1111 223444444444 444444555689
Q ss_pred ChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1377 SgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
|||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ |||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999966 99999999999999
Q ss_pred ecChhHHhhcCC
Q 000351 1454 YDTPEELLSNEG 1465 (1623)
Q Consensus 1454 ~Gtp~eLl~~~~ 1465 (1623)
.|+++++.+...
T Consensus 228 ~g~~~~~~~~~~ 239 (252)
T TIGR03005 228 QGKPDEIFRQPK 239 (252)
T ss_pred eCCHHHHhcCCC
Confidence 999999976543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=374.13 Aligned_cols=219 Identities=25% Similarity=0.409 Sum_probs=185.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc--C---CCcEEEECCEecCCC--ChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~--p---~~G~I~IdG~di~~i--~~~ 1310 (1623)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 369999999999999999999999999999999999953 6 499999999998643 345
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|+.++|+||+|.+|+.|+++|+... +... ++++.++++.+++.+.+ .+.......+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence 678899999999999999999999632 1111 23344556665554322 23345566789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999997
Q ss_pred hcCC
Q 000351 1462 SNEG 1465 (1623)
Q Consensus 1462 ~~~~ 1465 (1623)
+++.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=382.49 Aligned_cols=215 Identities=21% Similarity=0.335 Sum_probs=181.0
Q ss_pred EEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC---------
Q 000351 1239 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--------- 1306 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~--------- 1306 (1623)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999996432 259999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CChHHhhhceEEEcCCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHhcHHHHHHhcc
Q 000351 1307 ---------------FGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNS 1362 (1623)
Q Consensus 1307 ---------------i~~~~lR~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~----~i~~aL~~~~l~~~i~~lp 1362 (1623)
.+...+|++||||||+| .+|..||++||.+.. ..+.+ ++.++++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13456788999999987 678889999997421 12332 3444555544421
Q ss_pred CCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-c
Q 000351 1363 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-C 1440 (1623)
Q Consensus 1363 ~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~ 1440 (1623)
........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. |
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 23344556899999999999999999999999999999999999999999998864 47999999999998865 9
Q ss_pred CEEEEEeCceEeeecChhHHhhc
Q 000351 1441 DRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1441 DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||++|++|++++.|+++++.++
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=374.44 Aligned_cols=219 Identities=29% Similarity=0.419 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999999864 3445
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCC---CCC-----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHS-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~~s-----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|+.++|+||++.+|+.|+++|+.+.. ... ++++.++++..++++.. .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 6788899999999999999999997421 111 12344555555543211 12234455689999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988677999999999999877 9999999999999999999987
Q ss_pred hcCC
Q 000351 1462 SNEG 1465 (1623)
Q Consensus 1462 ~~~~ 1465 (1623)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14251 235 IAPK 238 (251)
T ss_pred hCCC
Confidence 6543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=367.88 Aligned_cols=205 Identities=31% Similarity=0.509 Sum_probs=175.4
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 169999999999999999999999999999999999999999999999999976 456778899
Q ss_pred EEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+|+||+|.+|.+ |+++|+.... ..+ ++++.++++..++. ........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999986 9999995321 112 23344555555444 3344455689999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
|++++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 47899999999999876 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=375.41 Aligned_cols=219 Identities=25% Similarity=0.434 Sum_probs=188.2
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CCh
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 1309 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~~ 1309 (1623)
..|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 35999999999964 479999999999999999999999999999999999997 579999999999864 345
Q ss_pred HHhhhceEEEcCCCccccccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHH
Q 000351 1310 MDLRKILGIIPQSPVLFSGTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1310 ~~lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQr 1381 (1623)
..+|+.++|+||++.+|.+|+++|+... +..+ ++++.++++..++.+.+ +...+.....||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence 6778899999999999999999999642 1111 23455666666664433 2334566678999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999866 999999999999999999999
Q ss_pred hhcC
Q 000351 1461 LSNE 1464 (1623)
Q Consensus 1461 l~~~ 1464 (1623)
.+.+
T Consensus 250 ~~~~ 253 (267)
T PRK14237 250 FTNP 253 (267)
T ss_pred hcCC
Confidence 7643
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=374.20 Aligned_cols=219 Identities=28% Similarity=0.414 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcc---ccC--CCcEEEECCEecCCC--ChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VEL--ERGRILIDGFDIAKF--GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl---~~p--~~G~I~IdG~di~~i--~~~ 1310 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 3699999999999999999999999999999999997 344 589999999999764 345
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC---CCC-----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF---SEH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~---~~~-----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||++.+|..|+++|+... ... .++++.++++.+++.+.+ ++...+.+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 678899999999999989999999631 111 123355556655553322 23345566789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999866 9999999999999999999998
Q ss_pred hcCC
Q 000351 1462 SNEG 1465 (1623)
Q Consensus 1462 ~~~~ 1465 (1623)
+++.
T Consensus 234 ~~~~ 237 (250)
T PRK14245 234 TNPE 237 (250)
T ss_pred cCCC
Confidence 6543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=365.84 Aligned_cols=202 Identities=27% Similarity=0.452 Sum_probs=176.1
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++||+++|+.. ++++|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 5799999999643 6999999999999 99999999999999999999999999999999999998766 678899999
Q ss_pred EcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~---~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||+|.+|.+ |+++|+... ...+ ++++.++++..++.++.+ ....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999976 999998631 1112 234566666666654432 23357999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988777999999999999976 9999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=379.70 Aligned_cols=215 Identities=28% Similarity=0.407 Sum_probs=181.7
Q ss_pred EEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC----CChHH
Q 000351 1239 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~----i~~~~ 1311 (1623)
|+++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996421 369999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhhceEEEcCCC--ccccccHHhhcCCCC---CCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1312 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1312 lR~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.|++++||||+| .+|+.|+++|+.... ..+.++ +.++++.+++.+ .........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 788999999998 688889999996321 123322 334444444421 2234455689999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhH
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~e 1459 (1623)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999876 99999999999999999999
Q ss_pred Hhhc
Q 000351 1460 LLSN 1463 (1623)
Q Consensus 1460 Ll~~ 1463 (1623)
+.++
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8753
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=375.66 Aligned_cols=219 Identities=25% Similarity=0.434 Sum_probs=185.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCCCC--hHH
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKFG--LMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~i~--~~~ 1311 (1623)
-+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999987643 345
Q ss_pred hhhceEEEcCCCccccccHHhhcCCC---CCC------CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1312 LRKILGIIPQSPVLFSGTVRFNLDPF---SEH------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~gTIr~NLd~~---~~~------sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
+|++++|+||++.+|.+|+++|+... ... .++++.++++..++.+.+ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 78899999999999999999999632 111 123355556665553321 12344556789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999876 9999999999999999999998
Q ss_pred hcCCC
Q 000351 1462 SNEGS 1466 (1623)
Q Consensus 1462 ~~~~~ 1466 (1623)
+.+..
T Consensus 237 ~~~~~ 241 (251)
T PRK14244 237 KNPQS 241 (251)
T ss_pred cCCCC
Confidence 66543
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=364.25 Aligned_cols=202 Identities=27% Similarity=0.435 Sum_probs=177.1
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+. ...|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999954 3799999999999999999999999999999999999999999999999998764 567888999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
+||++.+|. .|+++|+..+. ..+++++.++++..++.+...+ ....||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998884 69999996421 2345667777888777655433 23579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999865 47899999999999976 9999999999998865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=371.49 Aligned_cols=211 Identities=24% Similarity=0.365 Sum_probs=190.5
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhc
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1315 (1623)
.+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 3469999999952 3699999999999999999999999999999999999999999999998 3
Q ss_pred eEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1316 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1316 i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998543344556677888889999999999999999988889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1396 ILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~-L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||||||||++||+++...+.+. +++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999988775 4555568999999999999988999999999999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=372.19 Aligned_cols=221 Identities=22% Similarity=0.390 Sum_probs=186.7
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc--C---CCcEEEECCEecCCC--C
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--G 1308 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~--p---~~G~I~IdG~di~~i--~ 1308 (1623)
+|.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999964 369999999999999999999999999999999999986 4 689999999998753 3
Q ss_pred hHHhhhceEEEcCCCcccc-ccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChh
Q 000351 1309 LMDLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1379 (1623)
Q Consensus 1309 ~~~lR~~i~~vpQdp~Lf~-gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgG 1379 (1623)
...+|++++|+||++.+|. .|+++|+... ...+ ++++.++++..++.+.+. ........+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 4567889999999999997 5999999631 1111 233455566655543332 2233456789999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChh
Q 000351 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1458 (1623)
Q Consensus 1380 QrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~ 1458 (1623)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999876 9999999999999999999
Q ss_pred HHhhcCC
Q 000351 1459 ELLSNEG 1465 (1623)
Q Consensus 1459 eLl~~~~ 1465 (1623)
++...+.
T Consensus 233 ~~~~~~~ 239 (252)
T PRK14256 233 KIFTTPE 239 (252)
T ss_pred HHHhCCC
Confidence 9876543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=378.13 Aligned_cols=213 Identities=25% Similarity=0.446 Sum_probs=185.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 359999999999999999999999999999999999999999999999999988777788999999
Q ss_pred EcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1319 IPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1319 vpQdp--~Lf~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
+||+| .+|+.|+++|+.... ..+. +.+.++++.+++.+...+ ....||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99998 477889999996321 1222 235566666666554433 345799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 7899999999999965 999999999999999999999753
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=369.34 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=177.3
Q ss_pred cEEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---h
Q 000351 1238 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---l 1312 (1623)
.++++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hceEEEcCCCccccc-cHHhhcCCC---CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1313 R-KILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1313 R-~~i~~vpQdp~Lf~g-TIr~NLd~~---~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
| ++++|+||+|.+|.. |+++|+... ..... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 679999999998876 999999641 12222 2344445544 44444445556899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhccCEEEEEeCceEeeecC
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gt 1456 (1623)
++||||++.+|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999864 4789999999999999999999999999998765
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=354.42 Aligned_cols=178 Identities=33% Similarity=0.574 Sum_probs=166.1
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999965434699999999999999999999999999999999999999999999999998776 5678889999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEE
Q 000351 1319 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1398 (1623)
Q Consensus 1319 vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILl 1398 (1623)
+||+|.+|+.|+++|+ ..+||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCceEeeec
Q 000351 1399 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1399 LDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G 1455 (1623)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999887789999999999999889999999999998865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=371.18 Aligned_cols=219 Identities=21% Similarity=0.371 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~ 1317 (1623)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 799999999964 369999999999999999999999999999999999999999999999999988776654 45799
Q ss_pred EEcCCCccccc-cHHhhcCCCCCCCHHHH-------HHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSEHSDADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~~sd~~i-------~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
|+||++.+|.+ |+++|+....... ..+ ........+.+.++.+ |++.........||||||||++||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRD-KSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcc-cccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999987 9999997432100 000 0000111223334332 55555556667899999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
++++|+||||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999976 99999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=363.83 Aligned_cols=198 Identities=27% Similarity=0.461 Sum_probs=171.6
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEE
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~v 1319 (1623)
+++|++++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 369999999999999999999999999999999999999999999999999864 4567789999
Q ss_pred cCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1320 PQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1320 pQdp--~Lf~gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
||+| .+|..|+++|+.... ...++++.++++..++.++..+. ...||||||||++||||++.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999997432 11234677777777776554433 3479999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEe
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1452 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1452 (1623)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999873 57899999999999976 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=368.62 Aligned_cols=202 Identities=30% Similarity=0.412 Sum_probs=171.4
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH----h
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----L 1312 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~----l 1312 (1623)
|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 36999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hhceEEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1313 RKILGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
|++++|+||+|.+|.+ |+++|+.... ... ++++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERV-----------GLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhcChhhcCHHHHHHH
Confidence 5789999999999976 9999996421 111 12333444443 444444555568999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceE
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 1451 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1451 (1623)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=372.76 Aligned_cols=218 Identities=27% Similarity=0.436 Sum_probs=186.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCC--ChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i--~~~ 1310 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3899999999964 3699999999999999999999999999999999999984 899999999998753 344
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||+|.+|..|+++|+... +... ++++.++++..++.+.+ +........+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 678899999999999999999999732 1111 23355566666654322 22345566789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999988778999999999998866 9999999999999999999987
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
++.
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=375.24 Aligned_cols=218 Identities=26% Similarity=0.482 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999964 369999999999999999999999999999999999875 789999999999865 3345
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||++.+|++|+++|+... .... ++.+.++++..++.+.+ .........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHH
Confidence 678899999999999999999999632 1111 23345555555443211 12344556789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999998876 9999999999999999999987
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
.+.
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=370.86 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~ 1317 (1623)
|+++||+++|+. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
|+||++.+|.+ |+++|+.... ....++.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 9999996421 11111111 1223344433 555555666678999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998865 47899999999998876 99999999999999999998764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=350.39 Aligned_cols=202 Identities=28% Similarity=0.452 Sum_probs=175.2
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.|+++|+|+.|. ++.+++|+||+|++||+++++|||||||||+|++|.++++|++| .+.+ |.+
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRK 76 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc-eEEECCeecccCCHHHHHHh
Confidence 378999999997 46899999999999999999999999999999999999999999 4443 447
Q ss_pred EEEEccCcccC-cccHHHHHhcCC---CCCHH----HHHHHHHHhCchh--HHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 681 VAYVPQVSWIF-NATVRDNILFGS---AFEPA----RYEKAIDVTSLQH--DLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 681 iay~~Q~~~l~-~~Tv~enI~~g~---~~~~~----~~~~~~~~~~l~~--~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
||||-|+.-|| +.||.|||..-. .++++ +.++.++..+|++ ..+..|+ .|||||+|||.
T Consensus 77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVG 145 (309)
T COG1125 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVG 145 (309)
T ss_pred hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHH
Confidence 99999999998 789999998642 24544 4556677788864 4556664 89999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcch-hhhcCEEEEEeCCEEEEecChhHHhh
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
+||||..+|+|+|+||||+||||-+++.+-+.+..... -|+|+|+||||+++ ++.+|||.+|++|+|++.+++++++.
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999887766433 38999999999998 46799999999999999999999987
Q ss_pred cC
Q 000351 829 NG 830 (1623)
Q Consensus 829 ~~ 830 (1623)
+.
T Consensus 226 ~P 227 (309)
T COG1125 226 NP 227 (309)
T ss_pred Cc
Confidence 64
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=375.06 Aligned_cols=214 Identities=21% Similarity=0.323 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH---Hhhh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~---~lR~ 1314 (1623)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999876653 3577
Q ss_pred ceEEEcCCCccccc-cHHhhcCCC----CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~g-TIr~NLd~~----~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
+++|+||++.+|.+ |+++|+... ...+. +.+.++++..++ +........+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL-----------RGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHH
Confidence 89999999999986 999999631 11222 223344444444 33333445679999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998643 7899999999999877 99999999999999999999886
Q ss_pred cC
Q 000351 1463 NE 1464 (1623)
Q Consensus 1463 ~~ 1464 (1623)
+.
T Consensus 234 ~~ 235 (269)
T PRK11831 234 NP 235 (269)
T ss_pred CC
Confidence 43
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=373.24 Aligned_cols=216 Identities=26% Similarity=0.376 Sum_probs=183.3
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC-------
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG------- 1308 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~------- 1308 (1623)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++....
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 456999999999964 36999999999999999999999999999999999999999999999999986421
Q ss_pred ------hHHhhhceEEEcCCCccccc-cHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhh-hcC
Q 000351 1309 ------LMDLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQV-SEA 1372 (1623)
Q Consensus 1309 ------~~~lR~~i~~vpQdp~Lf~g-TIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v-~e~ 1372 (1623)
...+|++++|+||++.+|+. |+++|+... .... ++++.++++..++ +... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI-----------DERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCC
Confidence 34668899999999999975 999999631 1112 1234444444444 3332 445
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCce
Q 000351 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 1450 (1623)
Q Consensus 1373 G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1450 (1623)
...||||||||++|||||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 56899999999999999999999999999999999999999999999875 47999999999999987 99999999999
Q ss_pred EeeecChhHHhhcC
Q 000351 1451 VLEYDTPEELLSNE 1464 (1623)
Q Consensus 1451 ive~Gtp~eLl~~~ 1464 (1623)
+++.|+++++.+..
T Consensus 230 i~~~~~~~~~~~~~ 243 (257)
T PRK10619 230 IEEEGAPEQLFGNP 243 (257)
T ss_pred EEEeCCHHHhhhCc
Confidence 99999999987543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=376.72 Aligned_cols=216 Identities=27% Similarity=0.436 Sum_probs=187.4
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCC---cEEEECCEecCCCChHHhh
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDGFDIAKFGLMDLR 1313 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~---G~I~IdG~di~~i~~~~lR 1313 (1623)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4599999999996433469999999999999999999999999999999999999987 8999999999887777888
Q ss_pred hceEEEcCCC--ccccccHHhhcCCC---CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1314 KILGIIPQSP--VLFSGTVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1314 ~~i~~vpQdp--~Lf~gTIr~NLd~~---~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
++++|+||+| .+++.|+++|+.+. ...++ +++.++++.+++.++..+ ...+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDS-----------EPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHH
Confidence 9999999998 46678999999742 12233 235556666666554443 3468999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhh
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
+|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 789999999999998899999999999999999999875
Q ss_pred c
Q 000351 1463 N 1463 (1623)
Q Consensus 1463 ~ 1463 (1623)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=382.41 Aligned_cols=223 Identities=25% Similarity=0.383 Sum_probs=185.9
Q ss_pred cEEEEEEEEEeCCC--------CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh
Q 000351 1238 SIKFEDVVLRYRPE--------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 1309 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~--------~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~ 1309 (1623)
.|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999988875
Q ss_pred H---HhhhceEEEcCCCc--cccc-cHHhhcCC----CCCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCC
Q 000351 1310 M---DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375 (1623)
Q Consensus 1310 ~---~lR~~i~~vpQdp~--Lf~g-TIr~NLd~----~~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~ 1375 (1623)
. .+|++|+||||+|. |++. ||.+|+.. ..... .+++.++++.+++.+ .........
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP----------EHYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh----------HHhcCCCcc
Confidence 4 46778999999994 5553 88888741 11112 233555566665532 112333467
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEe
Q 000351 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVL 1452 (1623)
Q Consensus 1376 LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1452 (1623)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998653 7899999999999986 9999999999999
Q ss_pred eecChhHHhhcCCChHHH
Q 000351 1453 EYDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1453 e~Gtp~eLl~~~~~~f~~ 1470 (1623)
|.|+++++.+++...|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999999876555554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=376.28 Aligned_cols=212 Identities=26% Similarity=0.392 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4999999999964 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCccccc-cHHhhcCCCC-----------CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~-----------~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+++.+. ..+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHHH
Confidence 99999877665 9999996321 01233466677776665544333 3479999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999999874 37899999999999976 99999999999999999998764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=373.21 Aligned_cols=219 Identities=25% Similarity=0.416 Sum_probs=186.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~~~ 1310 (1623)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 59999999999643 69999999999999999999999999999999999997 699999999999853 3456
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC---CCCCH-----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF---SEHSD-----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~---~~~sd-----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||+|.+|..|+++|+... ...++ +.+.++++..++.+ ++.......+..|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHHH
Confidence 778899999999999989999999631 12222 12333444443321 3334455667789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999997
Q ss_pred hcCC
Q 000351 1462 SNEG 1465 (1623)
Q Consensus 1462 ~~~~ 1465 (1623)
+++.
T Consensus 255 ~~~~ 258 (271)
T PRK14238 255 SNPS 258 (271)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=390.29 Aligned_cols=204 Identities=31% Similarity=0.437 Sum_probs=175.7
Q ss_pred CcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh----hhceEEEcCCCccccc-
Q 000351 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG- 1328 (1623)
Q Consensus 1254 ~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l----R~~i~~vpQdp~Lf~g- 1328 (1623)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998877654 3579999999999975
Q ss_pred cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeC
Q 000351 1329 TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401 (1623)
Q Consensus 1329 TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDE 1401 (1623)
|+++|+.... ..+ ++++.++++.+++.++..+ ...+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999996321 112 2345556666666544443 345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChH
Q 000351 1402 ATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468 (1623)
Q Consensus 1402 pTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f 1468 (1623)
||++||+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++++++.++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999999864 47899999999999876 99999999999999999999987654444
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=375.87 Aligned_cols=213 Identities=29% Similarity=0.499 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC-hHHhhhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~-~~~lR~~i~ 1317 (1623)
|+++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ...++++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 36999999999999999999999999999999999999999999999999998765 356788999
Q ss_pred EEcCCCc--cccccHHhhcCCCCC---CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1318 IIPQSPV--LFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1318 ~vpQdp~--Lf~gTIr~NLd~~~~---~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
|+||+|. +++.|+++|+..... .+ ++.+.++++..++ +.........||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL-----------EKYRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCCcccCCHHHHHHHHHHH
Confidence 9999985 567899999974321 12 2234444555444 44444445689999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||+.+|+||||||||++||+.+...+.+.|++.. +++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998865 47999999999999988999999999999999999998753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=369.24 Aligned_cols=217 Identities=26% Similarity=0.454 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC--------hH
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------LM 1310 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~--------~~ 1310 (1623)
|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 8999999999643 6999999999999999999999999999999999999999999999999987542 34
Q ss_pred HhhhceEEEcCCCcccc-ccHHhhcCCC----CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1311 DLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~-gTIr~NLd~~----~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
.+|++++|+||++.+|. .|+++|+... .....++..+ .+.+.++.+ |++........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 57889999999999886 5999999631 1122221111 122333332 4544455566789999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999865 47899999999999976 999999999999999999998754
Q ss_pred C
Q 000351 1464 E 1464 (1623)
Q Consensus 1464 ~ 1464 (1623)
+
T Consensus 235 ~ 235 (250)
T PRK11264 235 P 235 (250)
T ss_pred C
Confidence 3
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=342.74 Aligned_cols=224 Identities=28% Similarity=0.449 Sum_probs=192.1
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhc
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKI 1315 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~ 1315 (1623)
+.+..+|+.++|... +|++||||+|++||.||+.|||||||||.+.++.|+..|++|+|.+||.||+.+|.+.. |-.
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 358899999999754 79999999999999999999999999999999999999999999999999999998864 556
Q ss_pred eEEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
|||+||||.+|.+ ||++||...-+..+.+...+-++..+.+.++.+ .+...-...|..||||||+|+-|||||..+|
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 9999999999987 999999743333332333333444444555543 5556666678899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-hhccCEEEEEeCceEeeecChhHHhhcC
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-IIDCDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~t-i~~~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
+.++||||.|++||-+-..||+.|+... +|--|++.-|...+ +.-|||.+++.+|+|...|+|+|+.+++
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999875 47789999999765 4559999999999999999999999865
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=342.06 Aligned_cols=217 Identities=26% Similarity=0.454 Sum_probs=184.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
+++.+++++|++. ..+++||||+++.||++||.|+|||||||++++|..++.|++|.|.|||.|+.+ .+...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 6889999999763 358999999999999999999999999999999999999999999999999988 56789999999
Q ss_pred EcCCCccccc-cHHhhcCCCCC---CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~~---~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
++-+.-++.. |+||||.+|+. .++.++. +...+..++ .+++..+..+..+||-|+|||++|||||+++|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~--l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKR--LQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHH--hChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 9977778755 99999987642 2333222 122222222 23444444445579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
+|+|||||||+||..+.+.+++.|++... +++||+-||.+++++. ||||+++.+|+++..|+++++.++.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999998764 8999999999999996 9999999999999999999998653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=370.09 Aligned_cols=218 Identities=26% Similarity=0.425 Sum_probs=186.8
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC-----CcEEEECCEecCCC--ChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~-----~G~I~IdG~di~~i--~~~ 1310 (1623)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999964 36999999999999999999999999999999999999997 69999999998653 445
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCC---C-CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~-~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|+.++|+||+|.+|+.|+++|+.... . .. ++.+.++++..++++.+. ......+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHHH
Confidence 7788999999999999999999997421 1 11 123444555555544332 3345667789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999987 8999999999999999999987
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=376.48 Aligned_cols=215 Identities=27% Similarity=0.419 Sum_probs=186.6
Q ss_pred cEEEEEEEEEeCCC-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1238 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
.|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 23599999999999999999999999999999999999999999999999999887778889999
Q ss_pred EEEcCCC--ccccccHHhhcCCCC---CCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1317 GIIPQSP--VLFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1317 ~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+|+||+| .++..|+.+|+.... ..++++ +.++++.+++.++.. .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 467789999996321 223333 345566656554433 33467999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999988999999999999999999998754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=382.57 Aligned_cols=212 Identities=31% Similarity=0.461 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 48999999999643 699999999999999999999999999999999999999999999999998764 356788999
Q ss_pred EEcCCCcccc-ccHHhhcCCCC---CCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFS-GTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~-gTIr~NLd~~~---~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
|+||++.++. .|+++|+..+. ..++.+ +.++++..+ ++.........||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-----------LESKADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------ChhHhcCchhhCCHHHHHHHHHHHH
Confidence 9999999885 59999996321 123332 223333333 3333344446799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|+++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+++++...
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47899999999999976 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=389.13 Aligned_cols=218 Identities=23% Similarity=0.406 Sum_probs=186.9
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
..|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.++ .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 369999999999999999999999999999999999999999999999999987765 46789
Q ss_pred EEEcCCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+||+|++.+|+. ||++|+.+.. ..+. +++.++++..++.++. .....+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999976 9999997421 1222 2345555555554443 3334579999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCC
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~ 1465 (1623)
||+++|+||+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++++.. ||||++|++|++++.|+|+++..++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999998887764 36899999999999876 99999999999999999999998776
Q ss_pred ChHH
Q 000351 1466 SSFS 1469 (1623)
Q Consensus 1466 ~~f~ 1469 (1623)
..|.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 5544
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=369.09 Aligned_cols=217 Identities=26% Similarity=0.446 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC--ChHHhhhce
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--GLMDLRKIL 1316 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i--~~~~lR~~i 1316 (1623)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999964 3699999999999999999999999999999999999999999999999999764 335678899
Q ss_pred EEEcCCCcccc-ccHHhhcCCCC----CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhh
Q 000351 1317 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1391 (1623)
Q Consensus 1317 ~~vpQdp~Lf~-gTIr~NLd~~~----~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL 1391 (1623)
+|+||++.+|. .|+++|+.... ..+..+..+ .+.+.++. .|++.........||||||||++||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAK--VGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHH--cCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999999886 59999996421 112211111 12233333 25555555556789999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1392 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1392 ~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 9999999999999999999999999998865 47999999999999976 9999999999999999999987543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=371.53 Aligned_cols=218 Identities=21% Similarity=0.398 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 48999999999643 69999999999999999999999999999999999986 479999999999853 4556
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCCC---C---CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~---~---sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
.+|++++|+||++.+|+.|+++|+..... . .++++.++++.+++.+.+. ........+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 77889999999999998899999974211 1 1234555667777655443 223455678999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEe---------CceEeee
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1454 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~ive~ 1454 (1623)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988777899999999999876 99999998 8999999
Q ss_pred cChhHHhhcC
Q 000351 1455 DTPEELLSNE 1464 (1623)
Q Consensus 1455 Gtp~eLl~~~ 1464 (1623)
|+++++.+++
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9999998654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=364.73 Aligned_cols=202 Identities=22% Similarity=0.372 Sum_probs=172.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 5789999999653 699999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+|. .|+++|+.... .... +++.++++..++.++ .......||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999996421 1222 234444555554433 3444467999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999865 37899999999999877 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=381.74 Aligned_cols=224 Identities=21% Similarity=0.388 Sum_probs=184.7
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc----CCCcEEEECCEecCCCChHHh
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~----p~~G~I~IdG~di~~i~~~~l 1312 (1623)
|+++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 89999999996532 259999999999999999999999999999999999997 489999999999999887766
Q ss_pred hh----ceEEEcCCCc--cccc-cHHhhc----CCCCCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCC
Q 000351 1313 RK----ILGIIPQSPV--LFSG-TVRFNL----DPFSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1377 (1623)
Q Consensus 1313 R~----~i~~vpQdp~--Lf~g-TIr~NL----d~~~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LS 1377 (1623)
|+ +|+||||+|. +++. |+.+|+ ....... ++++.++|+.+++.+.. .........||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 54 6999999995 4432 666554 2221112 23456666666664311 22344556899
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeee
Q 000351 1378 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1378 gGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1454 (1623)
||||||++|||||+.+|+|||+||||++||+.+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999965 999999999999999
Q ss_pred cChhHHhhcCCChHHH
Q 000351 1455 DTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1455 Gtp~eLl~~~~~~f~~ 1470 (1623)
|+++++.+++...|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 9999999876555544
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=376.23 Aligned_cols=215 Identities=25% Similarity=0.413 Sum_probs=185.8
Q ss_pred cEEEEEEEEEeCCC----CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC-hHHh
Q 000351 1238 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDL 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~-~~~l 1312 (1623)
-|+++|++++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hhceEEEcCCCc--cccccHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1313 RKILGIIPQSPV--LFSGTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1313 R~~i~~vpQdp~--Lf~gTIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
|++++|+||+|. +|..|+.+|+.+.. ..+ ++++.++++.+++.++..+. ...||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence 889999999984 67679999996431 112 34466667776666555443 35799999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
++|||||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..|||+++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999997
Q ss_pred hc
Q 000351 1462 SN 1463 (1623)
Q Consensus 1462 ~~ 1463 (1623)
++
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=373.46 Aligned_cols=220 Identities=26% Similarity=0.423 Sum_probs=188.2
Q ss_pred CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCC--CC
Q 000351 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FG 1308 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~--i~ 1308 (1623)
.+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 446999999999964 3699999999999999999999999999999999999884 89999999999875 34
Q ss_pred hHHhhhceEEEcCCCccccccHHhhcCCC---CC-CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhH
Q 000351 1309 LMDLRKILGIIPQSPVLFSGTVRFNLDPF---SE-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380 (1623)
Q Consensus 1309 ~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~---~~-~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQ 1380 (1623)
...+|++++|+||++.+|++|+++|+... .. .. ++++.++++.+++.+.+. +..+..+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 56778999999999999989999999632 11 11 233556666666544332 23455667899999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhH
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~e 1459 (1623)
|||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999876 99999999999999999999
Q ss_pred HhhcC
Q 000351 1460 LLSNE 1464 (1623)
Q Consensus 1460 Ll~~~ 1464 (1623)
+.+++
T Consensus 254 ~~~~~ 258 (272)
T PRK14236 254 LFTSP 258 (272)
T ss_pred HhcCC
Confidence 87543
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=375.45 Aligned_cols=215 Identities=25% Similarity=0.445 Sum_probs=184.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCCc-cc-cccHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1318 IIPQSPV-LF-SGTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1318 ~vpQdp~-Lf-~gTIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
|+||+|. +| ..|+++|+.... ... ++++.++++..++.+ .......+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHHHHH
Confidence 9999994 44 558999985321 112 223445555554433 333445689999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceEeeecChhHHhhc
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|++.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++..+
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 7899999999999988999999999999999999998753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=356.33 Aligned_cols=202 Identities=32% Similarity=0.522 Sum_probs=171.5
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc----------CcEE
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR----------GTVA 682 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~----------~~ia 682 (1623)
..|+++|++++|++ . ++|+||||++++|++++|+||||||||||+|+|+|.++|.+| .+.+. .+||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G-~i~~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG-EIKIFGKPVRKRRKRLRIG 78 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc-eEEEccccccccccCCeEE
Confidence 46999999999974 2 699999999999999999999999999999999999999999 44432 3699
Q ss_pred EEccCc---ccCcccHHHHHhcCCCC-----------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 683 YVPQVS---WIFNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 683 y~~Q~~---~l~~~Tv~enI~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
||||.. |-|..||+|-+..|... |.+...++++..++.+..+. .| .+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i----~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QI----GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cc----cccCcHHHHH
Confidence 999964 55889999999987422 34778888999988754432 23 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
|-|||||.++||+++|||||+|+|+.++..+++.+.....+|+||++||||++.+. .+|+|+.|+ +++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 99999999999999999999999999999999865554555999999999999875 589999985 5678899999887
Q ss_pred hcC
Q 000351 828 NNG 830 (1623)
Q Consensus 828 ~~~ 830 (1623)
+..
T Consensus 227 ~~~ 229 (254)
T COG1121 227 TEE 229 (254)
T ss_pred CHH
Confidence 543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=372.26 Aligned_cols=214 Identities=28% Similarity=0.454 Sum_probs=180.4
Q ss_pred EEEEEEEEEeCCC-------CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH
Q 000351 1239 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~ 1311 (1623)
|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 246999999999999999999999999999999999999999999999999998876543
Q ss_pred ---hhhceEEEcCCCc--cc-cccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCC
Q 000351 1312 ---LRKILGIIPQSPV--LF-SGTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 1376 (1623)
Q Consensus 1312 ---lR~~i~~vpQdp~--Lf-~gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~L 1376 (1623)
+|++++|+||+|. ++ ..|+++|+... .... ++++.++++.. |++ .........|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV-----------GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCChhhC
Confidence 6778999999983 44 36999998521 1111 22334444443 443 2344556789
Q ss_pred ChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1377 SgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
|||||||++|||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998753 7899999999999976 99999999999999
Q ss_pred ecChhHHhhc
Q 000351 1454 YDTPEELLSN 1463 (1623)
Q Consensus 1454 ~Gtp~eLl~~ 1463 (1623)
.|+++++...
T Consensus 232 ~g~~~~~~~~ 241 (265)
T TIGR02769 232 ECDVAQLLSF 241 (265)
T ss_pred ECCHHHHcCC
Confidence 9999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=384.92 Aligned_cols=212 Identities=29% Similarity=0.474 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++. .+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+ ...|++||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999643 6999999999999999999999999999999999999999999999999997654 56788999
Q ss_pred EEcCCCcccc-ccHHhhcCCCC---CCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFS-GTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~-gTIr~NLd~~~---~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
|+||++.++. .|+++|+..+. ..+..+ +.++++.+ |++........+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-----------~L~~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA-----------RLESKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhCCChhhCCHHHHHHHHHHHH
Confidence 9999999874 59999997432 122222 22333333 33333344445799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|+.+|++|||||||++||+.+.+.+++.|++.. +++|||++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999875 47999999999999977 999999999999999999999764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=369.44 Aligned_cols=215 Identities=25% Similarity=0.364 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecC------CCChHHh
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA------KFGLMDL 1312 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~------~i~~~~l 1312 (1623)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 36999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hhceEEEcCCCccccc-cHHhhcCCC----CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1313 RKILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~g-TIr~NLd~~----~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
|++++|+||+|.+|.+ |+++|+... .....++.. ..+.++++.+ |++........+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 8899999999999976 999999621 111222111 1123333332 455555555678999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
||++++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 99999999999999999999999999999999865 47999999999999976 99999999999999999998754
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=372.39 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=187.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 5999999999964 3699999999999999999999999999999999999985 48999999999864 3456
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||++.+|+.|+++|+... +... ++.+.++++.+++.+.+. ......+..|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHH
Confidence 678899999999999999999999631 1112 233556677777654433 2234456689999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEe-----CceEeeecC
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-----SGRVLEYDT 1456 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-----~G~ive~Gt 1456 (1623)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.+ ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999988777999999999999977 99999998 599999999
Q ss_pred hhHHhhcCC
Q 000351 1457 PEELLSNEG 1465 (1623)
Q Consensus 1457 p~eLl~~~~ 1465 (1623)
++++.+++.
T Consensus 238 ~~~~~~~~~ 246 (259)
T PRK14260 238 TTQIFSNPL 246 (259)
T ss_pred HHHHhcCCC
Confidence 999976543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=372.60 Aligned_cols=211 Identities=25% Similarity=0.445 Sum_probs=184.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCCCccccc-cHHhhcCCCC--------CC---CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHH
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFS--------EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1386 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~--------~~---sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaL 1386 (1623)
+||++.++.+ |+++|++... .. .++++.++++..++.+. .......||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHHH
Confidence 9999998877 9999997421 11 12335555665555433 333456799999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1387 ARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998865 47899999999999876 99999999999999999998864
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=370.10 Aligned_cols=220 Identities=23% Similarity=0.409 Sum_probs=189.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCCC--ChHH
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~i--~~~~ 1311 (1623)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.+++.. +...
T Consensus 4 l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 789999999964 369999999999999999999999999999999999875 3899999999998753 4567
Q ss_pred hhhceEEEcCCCccccccHHhhcCCC-C--C-CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1312 LRKILGIIPQSPVLFSGTVRFNLDPF-S--E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~gTIr~NLd~~-~--~-~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
+|++++|+||+|.+|.+|+++|+... . . .+ ++.+.++++.+++.+.+.. .++..+.+||+|||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHHH
Confidence 88999999999999999999999632 1 1 11 2335666777777655432 2345567899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999887 99999999999999999999976
Q ss_pred cCCCh
Q 000351 1463 NEGSS 1467 (1623)
Q Consensus 1463 ~~~~~ 1467 (1623)
.+...
T Consensus 235 ~~~~~ 239 (250)
T PRK14266 235 NPKDK 239 (250)
T ss_pred CCCCh
Confidence 65443
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=380.14 Aligned_cols=211 Identities=24% Similarity=0.414 Sum_probs=184.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+ +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 899999999964 369999999999999999999999999999999999999999999999999977 45678899999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||+|.+|.+ |+++||..+. .... +++.++++.. |++........+||||||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELV-----------GLRPEQHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996422 1122 2233333333 455555556678999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
+++|++|||||||++||+.+.+.+++.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998778999999999999987 999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=368.47 Aligned_cols=211 Identities=28% Similarity=0.435 Sum_probs=179.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH-hhhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~-lR~~i~ 1317 (1623)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 5789999999743 6999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEcCCCccccc-cHHhhcCCCC-C--CCHHH-HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS-E--HSDAD-LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~-~--~sd~~-i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
|+||++.+|.. |+++|+.... . ..+++ ..++++..+ +++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999986 9999996321 1 11111 222222222 23334455566899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998753 7899999999999986 9999999999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=367.62 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=180.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH-hhhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~-lR~~i 1316 (1623)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+.+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998887654 57789
Q ss_pred EEEcCCCccccc-cHHhhcCCCCC-CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~~-~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
+|+||++.+|.+ |+++|+..... ...++..+.+ .+.++.++ +++.........||||||||++||||++++|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999985 99999964211 1122222111 12222221 1222233345679999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||||++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999864 47999999999998766 99999999999999999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=358.93 Aligned_cols=217 Identities=28% Similarity=0.437 Sum_probs=190.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCE---ecCCCChHHhhh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFGLMDLRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~---di~~i~~~~lR~ 1314 (1623)
.|+++|+++.|+.- ++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++++ .-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence 37889999999654 6999999999999999999999999999999999999999999999999 777633 3345
Q ss_pred ceEEEcCCCccccc-cHHhhcCCCC---------CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDPFS---------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~g-TIr~NLd~~~---------~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
+||+|.|+..||.. ||++||.+.- ...+.++.+.|+.++|..+-++.| ..||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 79999999999965 9999997543 123455667788888777666665 47999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
||||||.-+|++|+||||.++||+.-.+.+++-|++... +.|+++|||+.+++.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999998653 7899999999999877 9999999999999999999999
Q ss_pred hcCCChHH
Q 000351 1462 SNEGSSFS 1469 (1623)
Q Consensus 1462 ~~~~~~f~ 1469 (1623)
..+++.|-
T Consensus 227 ~~P~s~fV 234 (345)
T COG1118 227 DHPASRFV 234 (345)
T ss_pred cCCCccce
Confidence 88877663
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=363.62 Aligned_cols=203 Identities=29% Similarity=0.436 Sum_probs=172.1
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh---h
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---R 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l---R 1313 (1623)
|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++.... |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 369999999999999999999999999999999999999999999999999988776543 4
Q ss_pred -hceEEEcCCCcccc-ccHHhhcCCC---CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1314 -KILGIIPQSPVLFS-GTVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1314 -~~i~~vpQdp~Lf~-gTIr~NLd~~---~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
++++|+||++.+|. .|+++|+... ..... +++.++++.. |++.........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV-----------GLEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 67999999999986 5999999641 11221 2233344443 454444555568999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhccCEEEEEeCceEe
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 1452 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~iv 1452 (1623)
+||||++++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999864 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=369.31 Aligned_cols=218 Identities=24% Similarity=0.397 Sum_probs=186.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCC--ChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i--~~~ 1310 (1623)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999964 3699999999999999999999999999999999999875 799999999999653 345
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~~-s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
..|++++|+||++.+|+.|+++|+.... .. + ++++.++++.+++.+.+. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence 6788999999999999999999997421 11 1 223455666665533222 2344456789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777999999999999877 9999999999999999999987
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=368.68 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH-hhhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~-lR~~i~ 1317 (1623)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|++++
T Consensus 4 l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 899999999964 36999999999999999999999999999999999999999999999999998877644 578899
Q ss_pred EEcCCCccccc-cHHhhcCCCCC----CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~----~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
|+||++.+|.+ |+++|+..... .+.++. ...+.+.++.+ |++.........||||||||++||||+++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999998875 99999975321 111111 12233444443 56555666677899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998764 47899999999988866 99999999999999999999864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=373.64 Aligned_cols=213 Identities=22% Similarity=0.375 Sum_probs=185.5
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
-.|+++||+++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999974 3699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCcccc-ccHHhhcCCCC--C------C---CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1317 GIIPQSPVLFS-GTVRFNLDPFS--E------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1317 ~~vpQdp~Lf~-gTIr~NLd~~~--~------~---sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
+|+||++.+|. .|+++|+.... . . .++.+.++++..++.++ .......||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 99999998875 59999996421 1 1 12345556666555443 3344568999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999876 9999999999999999999876
Q ss_pred h
Q 000351 1462 S 1462 (1623)
Q Consensus 1462 ~ 1462 (1623)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=373.59 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCC--CCh
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 1309 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~--i~~ 1309 (1623)
..|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 358999999999643 69999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHhhhceEEEcCCCccccccHHhhcCCCC---CC---CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1310 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1310 ~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~~---sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
..+|++++|+||++.+|.+|+++|+.... .. .++++.++++..++...+. ........+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHH
Confidence 56788999999999999889999996321 11 2344566666665533221 23345567899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEE-EEeCceEeeecChhHHh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL-LLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~-Vl~~G~ive~Gtp~eLl 1461 (1623)
++|||||+++|+||||||||++||+++.+.+.+.|++..+++|||+|||+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998777899999999999877 99976 56999999999999987
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
++.
T Consensus 269 ~~~ 271 (285)
T PRK14254 269 ENP 271 (285)
T ss_pred hCc
Confidence 644
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=377.29 Aligned_cols=213 Identities=33% Similarity=0.578 Sum_probs=188.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|+.+ ..+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47899999999732 3799999999999999999999999999999999999999999999999998775 778999999
Q ss_pred EEcCCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~-------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
|+||+|.+++. |++|||+++.. ..++.+.+.++..+|.+.- ......||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998876 99999985431 2245677788887765421 22345799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~-~-~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||+++||.++.+.. ||||++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999875 4 699999999999988 999999999999999999998754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=369.59 Aligned_cols=218 Identities=24% Similarity=0.416 Sum_probs=186.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCC--ChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i--~~~ 1310 (1623)
.|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999964 3699999999999999999999999999999999999763 489999999999876 456
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCCC----CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~----~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
..|+.++|+||+|.+|++|+++|+..... .. ++.+.++++.+++.+. +.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHHH
Confidence 77889999999999999999999974211 11 2234555555554332 223355667789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++.+|+++||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999976 9999999999999999999987
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
.++
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=365.87 Aligned_cols=204 Identities=25% Similarity=0.329 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhce
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 369999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEcCCCcccc-ccHHhhcCCCC---CC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1317 GIIPQSPVLFS-GTVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1317 ~~vpQdp~Lf~-gTIr~NLd~~~---~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+|+||+|.+|+ .|+++|+.... .. .++++.++++..++.+.. .....+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFE-----------NAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHHH
Confidence 99999999987 59999996321 11 123455555555554433 3334579999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEe--CceEeeecChh
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1458 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~ive~Gtp~ 1458 (1623)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999864 37899999999998876 99999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=371.61 Aligned_cols=222 Identities=22% Similarity=0.360 Sum_probs=190.1
Q ss_pred CCCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecC---
Q 000351 1234 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--- 1305 (1623)
Q Consensus 1234 p~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~--- 1305 (1623)
|..+.|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 556789999999999643 699999999999999999999999999999999999975 7999999998874
Q ss_pred -CCChHHhhhceEEEcCCCccccccHHhhcCCCC---C-----CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCC
Q 000351 1306 -KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---E-----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376 (1623)
Q Consensus 1306 -~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~-----~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~L 1376 (1623)
......+|++++|+||++.+|.+|+++|+.... . ..++++.++++.+++.+. +....+.....|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccC
Confidence 234456788999999999999999999996321 1 123456666766665432 233445566789
Q ss_pred ChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1377 SgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
|||||||++|||||+++|+||||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988777899999999999976 9999999999999999
Q ss_pred ChhHHhhcC
Q 000351 1456 TPEELLSNE 1464 (1623)
Q Consensus 1456 tp~eLl~~~ 1464 (1623)
+++++..+.
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999987543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=363.11 Aligned_cols=200 Identities=29% Similarity=0.462 Sum_probs=170.7
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEE
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~v 1319 (1623)
+++|++++|+++..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999965223699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred cCCCc--cccccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1320 PQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1320 pQdp~--Lf~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
||+|. ++..|+++|+.... ..++ +++.+.++..++ +.........||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL-----------EGLRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCHHHHHHHHHHHHH
Confidence 99983 66789999996421 1122 233444444444 3334444568999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCce
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 1450 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1450 (1623)
+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999875 37899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=359.29 Aligned_cols=201 Identities=30% Similarity=0.510 Sum_probs=174.3
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC-------------c
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-------------T 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~-------------~ 680 (1623)
.++++|++|+|+ ++++++|+||++++|++++|+||||||||||||+|+|.++|.+| .+.+.+ .
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCCchhhcCHHHHhhh
Confidence 478999999997 47899999999999999999999999999999999999999999 555543 6
Q ss_pred EEEEccCccc-CcccHHHHHhcCCC-C----------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 681 VAYVPQVSWI-FNATVRDNILFGSA-F----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 681 iay~~Q~~~l-~~~Tv~enI~~g~~-~----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+||+||++.. +.-||+|-+.+|+. + |.+...++++.+++.+..+.. ..+||||||||
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQr 146 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQR 146 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHH
Confidence 9999999866 57899999999842 1 333566678888887655432 24799999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhHH
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l 826 (1623)
|.|||||+++|+|++||||||+||....-.+++.+.+.. .+|+|+|+|+||+++. ..||++++|++|+++.+|+++|+
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 999999999999999999999999999999998766644 4599999999999875 67999999999999999999988
Q ss_pred hhc
Q 000351 827 SNN 829 (1623)
Q Consensus 827 ~~~ 829 (1623)
+..
T Consensus 227 lT~ 229 (258)
T COG1120 227 LTE 229 (258)
T ss_pred cCH
Confidence 754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=373.68 Aligned_cols=218 Identities=22% Similarity=0.370 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC----ChHH
Q 000351 1239 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i----~~~~ 1311 (1623)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 88999999996421 3699999999999999999999999999999999999999999999999998764 3467
Q ss_pred hhhceEEEcCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCCChhHHHHHH
Q 000351 1312 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1312 lR~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~LSgGQrQrLa 1385 (1623)
+|++|+|+||+| .+|+.|+++|+.... ..+.++..+. +.+.++. .|++ .........||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLAL--VGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 888999999998 578889999996321 1233322211 1223332 2444 2345556789999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999865 37899999999999876 999999999999999999998753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=368.77 Aligned_cols=211 Identities=27% Similarity=0.425 Sum_probs=183.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCCCcc-ccccHHhhcCCCCC---C----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVL-FSGTVRFNLDPFSE---H----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~L-f~gTIr~NLd~~~~---~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+ +..|+++|+..... . .++.+.++++..++.+. .......||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 56799999964211 1 12335555665555443 3334568999999999999999
Q ss_pred h------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1391 L------RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1391 L------~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+ .+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999865 47899999999999875 9999999999999999999886
Q ss_pred h
Q 000351 1462 S 1462 (1623)
Q Consensus 1462 ~ 1462 (1623)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 4
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=363.38 Aligned_cols=200 Identities=26% Similarity=0.388 Sum_probs=172.7
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH---Hhhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~---~lR~~ 1315 (1623)
|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3699999999999999999999999999999999999999999999999999887643 46788
Q ss_pred eEEEcCCCcccc-ccHHhhcCCCC---CC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLFS-GTVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf~-gTIr~NLd~~~---~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
++|+||+|.+|. .|+++|+.... .. .++++.++++..++.+...+. ..+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHHH
Confidence 999999999986 59999996421 11 234566677776665544333 357999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCce
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 1450 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1450 (1623)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=376.07 Aligned_cols=214 Identities=27% Similarity=0.463 Sum_probs=180.6
Q ss_pred cEEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC----ChH
Q 000351 1238 SIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i----~~~ 1310 (1623)
.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 3699999999999999999999999999999999999999999999999998653 245
Q ss_pred HhhhceEEEcCCC--ccccccHHhhcCCC---CCCCHHH----HHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCCChhH
Q 000351 1311 DLRKILGIIPQSP--VLFSGTVRFNLDPF---SEHSDAD----LWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 1380 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp--~Lf~gTIr~NLd~~---~~~sd~~----i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~LSgGQ 1380 (1623)
..|+.++|+||+| .+|..|+++|+... ...+.++ +.++++.+ |++ ........+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-----------GLSEDLISKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCChhHhhCCcccCCHHH
Confidence 6778899999998 57788999999631 1122222 23333333 444 23445567899999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChh
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1458 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~ 1458 (1623)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999874 47899999999999876 9999999999999999999
Q ss_pred HHhh
Q 000351 1459 ELLS 1462 (1623)
Q Consensus 1459 eLl~ 1462 (1623)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 9875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=362.46 Aligned_cols=201 Identities=24% Similarity=0.351 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh---HHhhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~---~~lR~~ 1315 (1623)
|+++|++++|+.+ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987654 346788
Q ss_pred eEEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
++|+||+|.+|.. |+++|+.... ..+ ++++.++++..++.+.. .....+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-----------RALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHH
Confidence 9999999999975 9999996421 112 23355555655554433 333457999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceE
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1451 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1451 (1623)
|||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 57999999999999987 999999999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=367.74 Aligned_cols=203 Identities=29% Similarity=0.394 Sum_probs=176.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 4999999999964 36999999999999999999999999999999999999999999999998763 4678899
Q ss_pred EEcCCCcccc-ccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1318 IIPQSPVLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1318 ~vpQdp~Lf~-gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
|+||++.+|+ .|+++|+.... ...++++.++++..++.+. ......+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 59999997431 1224456666666655443 334456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChh
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1458 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~ 1458 (1623)
+|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999866 9999999999999988765
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=366.05 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=181.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+.. ++++|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 5789999999743 69999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~---~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+|.+ |+++|+.... .. .++++.++++..++.++.. ....+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996311 11 1234555555555544443 34468999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
+++|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998653 7999999999999876 999999999999999999988754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=365.04 Aligned_cols=238 Identities=34% Similarity=0.626 Sum_probs=202.7
Q ss_pred HHHHHhcccccccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccC
Q 000351 590 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 669 (1623)
Q Consensus 590 RI~~fL~~~e~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 669 (1623)
.+.+.|..+...+. ..+.....+.|+++|+++.+ +++|+|+||+|++|++++|+|+||||||||+++|+|.++|
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 16 GFGELLEKAKQENN-DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred HHHHHHhccccccc-ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44555555433221 11223345679999999952 4699999999999999999999999999999999999999
Q ss_pred CCCCeEEEcCcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 670 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 670 ~~g~~~~~~~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
++| .+.+.+.|+|++|++++++.|++||+.++....+.++...++.+++.+.++.++.+.++.+++.+.+||||||||+
T Consensus 90 ~~G-~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 90 SEG-KIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred CCc-EEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 999 7788889999999999998999999998755555566777888899888999999988889999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
+||||++++|+++||||||++||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999987666544568999999999999988999999999999999999998765
Q ss_pred ChhHH
Q 000351 830 GELFQ 834 (1623)
Q Consensus 830 ~~~~~ 834 (1623)
...+.
T Consensus 249 ~~~~~ 253 (282)
T cd03291 249 RPDFS 253 (282)
T ss_pred chHHH
Confidence 43333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=373.05 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecC--CCChHHhhhce
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKIL 1316 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~--~i~~~~lR~~i 1316 (1623)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 36999999999999999999999999999999999999999999999999985 33445778899
Q ss_pred EEEcCCCc--cccccHHhhcCCC---CCCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1317 GIIPQSPV--LFSGTVRFNLDPF---SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1317 ~~vpQdp~--Lf~gTIr~NLd~~---~~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+|+||+|. ++..|+.+|+... ...+++ ++.++++..++.++ ......+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHHH
Confidence 99999985 5677899998642 112222 23445555555433 2334567999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 47899999999999966 999999999999999999998753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=369.64 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999643 699999999999999999999999999999999999974 69999999999853 4456
Q ss_pred HhhhceEEEcCCCccccc-cHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHH
Q 000351 1311 DLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~g-TIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQr 1381 (1623)
.+|+.++++||++.+|.. |+++|+... ...+ ++.+.++++..++.+.+ +........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 788899999999999974 999999631 1111 23345556666553322 2234455678999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEe------CceEeee
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD------SGRVLEY 1454 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~------~G~ive~ 1454 (1623)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999876 99999997 8999999
Q ss_pred cChhHHhhcC
Q 000351 1455 DTPEELLSNE 1464 (1623)
Q Consensus 1455 Gtp~eLl~~~ 1464 (1623)
|++++++.++
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999987643
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=369.77 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=185.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCCC-hHH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG-LMD 1311 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i~-~~~ 1311 (1623)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999964 3799999999999999999999999999999999999986 6999999999997653 456
Q ss_pred hhhceEEEcCCCccccccHHhhcCCC----CCCCHHHHH----HHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1312 LRKILGIIPQSPVLFSGTVRFNLDPF----SEHSDADLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~sd~~i~----~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
+|++++|+||+|.+|+.|+++|+... ...++++.. +.++..++.+. +++.+.....+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHHH
Confidence 78899999999999999999999732 112343332 23333333221 2234456677899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999986
Q ss_pred cC
Q 000351 1463 NE 1464 (1623)
Q Consensus 1463 ~~ 1464 (1623)
.+
T Consensus 252 ~~ 253 (276)
T PRK14271 252 SP 253 (276)
T ss_pred Cc
Confidence 54
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=376.42 Aligned_cols=221 Identities=22% Similarity=0.395 Sum_probs=181.9
Q ss_pred CccEEEEEEEEEeCCCC---CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC----C-
Q 000351 1236 SGSIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----F- 1307 (1623)
Q Consensus 1236 ~g~I~~~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~----i- 1307 (1623)
.|.|+++|++++|+... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999996432 259999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHHhhhceEEEcCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCCChhHH
Q 000351 1308 GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1308 ~~~~lR~~i~~vpQdp--~Lf~gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~LSgGQr 1381 (1623)
+...+|++++|+||+| .+|..|+++|+.+.. ....++..+. +.+.++. .|+. .........||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~--~~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKL--VQLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCChhHhcCChhhCCHHHH
Confidence 3566788999999998 467889999996421 1222222211 1122222 2442 234455678999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChh
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1458 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~ 1458 (1623)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 7899999999999866 9999999999999999999
Q ss_pred HHhhc
Q 000351 1459 ELLSN 1463 (1623)
Q Consensus 1459 eLl~~ 1463 (1623)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 98753
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=341.68 Aligned_cols=211 Identities=30% Similarity=0.510 Sum_probs=179.3
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE---------------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 676 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 676 (1623)
.+.|++++++++|. ++.+++||||+|++||+++|+|||||||||||++|.|+++|++|....
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 46799999999996 478999999999999999999999999999999999999999994322
Q ss_pred EcCcEEEEccCcccC-cccHHHHHhcC----CCCCHHHHHH----HHHHhCchhH-HhcCCCCCcccccCCCCccChHHH
Q 000351 677 IRGTVAYVPQVSWIF-NATVRDNILFG----SAFEPARYEK----AIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 677 ~~~~iay~~Q~~~l~-~~Tv~enI~~g----~~~~~~~~~~----~~~~~~l~~~-~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
++.++|+++|+--|| +.||+|||.|. ...+++.+++ -++.++|..+ .+.+|. +||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-----------ELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS-----------ELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch-----------hhcchHH
Confidence 234699999999999 67999999985 2344444433 3678999988 777774 8999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 823 (1623)
+|+|||||+..||+++++|||||||||.+...+- .++..+.+ |.|+|+||||++.+.. ||||+++.||+|+.+|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999887664 56664433 8999999999998765 799999999999999999
Q ss_pred hHHhhcC-hhHHHhH
Q 000351 824 EDLSNNG-ELFQKLM 837 (1623)
Q Consensus 824 ~~l~~~~-~~~~~~~ 837 (1623)
+|+.+.. +..++++
T Consensus 231 ~el~~sd~P~v~qf~ 245 (263)
T COG1127 231 EELLASDDPWVRQFF 245 (263)
T ss_pred HHHHhCCCHHHHHHh
Confidence 9998764 4445544
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=366.44 Aligned_cols=217 Identities=26% Similarity=0.403 Sum_probs=185.5
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecC-CCChHH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA-KFGLMD 1311 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~-~i~~~~ 1311 (1623)
.++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999964 3699999999999999999999999999999999999986 5999999999986 445667
Q ss_pred hhhceEEEcCCCccccccHHhhcCCCC---CC-CH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1312 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~~-sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
+|+.++|+||+|.+|..|+++|+.... .. .+ +++.++++.+++.+.+ ..........||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 888999999999999999999996321 11 11 2344455555554322 233455567899999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999887 99999999999999999999865
Q ss_pred c
Q 000351 1463 N 1463 (1623)
Q Consensus 1463 ~ 1463 (1623)
+
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=359.70 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=186.7
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh----HHhhhc
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 1315 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~----~~lR~~ 1315 (1623)
.+.|+.++|+++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999755 479999999999999999999999999999999999999999999999998876542 245678
Q ss_pred eEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1316 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1316 i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
++|+||+|.+|+.|+++|+.......+++..++++..++.+.+..+|.|+++.++....+||||||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998654455667788889999999898899999998888888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCcEEEEeecCchhhhccCEEEEEeCce
Q 000351 1396 ILVLDEATAAVDVRTDALIQK--TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 1450 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~--~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1450 (1623)
||||||||++||+.+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999988877 444432 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=378.91 Aligned_cols=226 Identities=25% Similarity=0.408 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCC--CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC---CcEEEECCEecCCCChHHh
Q 000351 1238 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~---~G~I~IdG~di~~i~~~~l 1312 (1623)
.++++|++++|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2236999999999999999999999999999999999999996 9999999999999887766
Q ss_pred h----hceEEEcCCC--cccc-ccHHhhcC----CCCCCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCC
Q 000351 1313 R----KILGIIPQSP--VLFS-GTVRFNLD----PFSEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1377 (1623)
Q Consensus 1313 R----~~i~~vpQdp--~Lf~-gTIr~NLd----~~~~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LS 1377 (1623)
| ++|+||||+| .+++ .|+.+|+. .+...+.+ .+.+.++.+++ +.+. ..++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 4 4799999999 4554 37777663 22222322 23444444443 2111 22455667899
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeee
Q 000351 1378 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1378 gGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1454 (1623)
||||||++|||||+.+|++||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 000351 1455 DTPEELLSNEGSSFSKM 1471 (1623)
Q Consensus 1455 Gtp~eLl~~~~~~f~~l 1471 (1623)
|+++++.+++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998766556543
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=364.35 Aligned_cols=211 Identities=25% Similarity=0.411 Sum_probs=173.3
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh---HHhh
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~---~~lR 1313 (1623)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999988764 5678
Q ss_pred hceEEEcCCC--ccc-cccHHhhcCC----CCCCCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCCChhHHHHHH
Q 000351 1314 KILGIIPQSP--VLF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp--~Lf-~gTIr~NLd~----~~~~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~LSgGQrQrLa 1385 (1623)
++++|+||+| .++ ..|+++|+.. +....+++..+.. ..+.++.+ |++ ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 4699999852 1111111111100 01233332 443 3455666789999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
||||++.+|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998754 7899999999999985 9999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=364.29 Aligned_cols=210 Identities=26% Similarity=0.441 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 5789999999743 69999999999999999999999999999999999999999999999999987653 4778999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||+|.+|++ |+++|+.... ..+ ++++.+++++.++.++ ......+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-----------GDRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 111 2234444555444433 3334468999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
+++|+|+||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998654 7899999999999876 999999999999999999999754
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=346.92 Aligned_cols=172 Identities=38% Similarity=0.671 Sum_probs=162.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997533469999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEE
Q 000351 1319 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1398 (1623)
Q Consensus 1319 vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILl 1398 (1623)
++|+|.+|++|+++|+ ||||||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEEEeCceE
Q 000351 1399 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRV 1451 (1623)
Q Consensus 1399 LDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1451 (1623)
|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998865 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=367.90 Aligned_cols=219 Identities=23% Similarity=0.337 Sum_probs=188.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCC--ChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i--~~~ 1310 (1623)
.+.+++.+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 38999999999643 699999999999999999999999999999999999986 799999999998643 344
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCCC------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
.+|++++|+||++.+|..|+++|+..... ..++++.++++.+++.+.+.. ..++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 67888999999999999999999974311 123456777777776544432 23455678999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEe--------CceEeeec
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD--------SGRVLEYD 1455 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~--------~G~ive~G 1455 (1623)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998777899999999999876 99999996 89999999
Q ss_pred ChhHHhhcCC
Q 000351 1456 TPEELLSNEG 1465 (1623)
Q Consensus 1456 tp~eLl~~~~ 1465 (1623)
+++++.+++.
T Consensus 239 ~~~~~~~~~~ 248 (261)
T PRK14263 239 PTAQIFQNPR 248 (261)
T ss_pred CHHHHHhCCC
Confidence 9999986543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=369.46 Aligned_cols=218 Identities=23% Similarity=0.418 Sum_probs=186.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 5999999999964 3699999999999999999999999999999999999864 58999999999864 3445
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCCC------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
.+|++++|+||++.+|+.|+++|+..... ..++++.++++.+++.+.+. .........||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHHH
Confidence 67889999999999998899999964211 12344556666666654332 223445578999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEe---------CceEeee
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1454 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~ive~ 1454 (1623)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. |||+++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998778999999999999976 99999997 8999999
Q ss_pred cChhHHhhcC
Q 000351 1455 DTPEELLSNE 1464 (1623)
Q Consensus 1455 Gtp~eLl~~~ 1464 (1623)
|+++++..++
T Consensus 251 g~~~~~~~~~ 260 (274)
T PRK14265 251 SPTEQMFGSP 260 (274)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=362.91 Aligned_cols=498 Identities=19% Similarity=0.183 Sum_probs=325.2
Q ss_pred HHHHHHhhhhchhhhhcccCccC---CCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000351 927 LTETLRVSSSTWLSYWTDQSSLK---THGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 1001 (1623)
Q Consensus 927 ~~~~~~~~~~~wl~~w~~~~~~~---~~~~~--~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ap 1001 (1623)
+..++....++|+..|...-.+. .+... ..+.+|..++.+..++.....++-.....+--.-+-+.++++-+..-
T Consensus 54 ~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~ 133 (604)
T COG4178 54 ALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR 133 (604)
T ss_pred HHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555677788888887543211 11122 24556777777777777777777777777777777778888877666
Q ss_pred ccccccCCch------hHHHHHhcccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHH---------------HHHHHHHH
Q 000351 1002 MVFFHTNPLG------RIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV---------------STMSLWAI 1060 (1623)
Q Consensus 1002 ~~ff~~~~~G------~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 1060 (1623)
.||.....| ..=+|+.+|+...-.........++.++.++++..++..-. ..++.+++
T Consensus 134 -~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~ 212 (604)
T COG4178 134 -RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAV 212 (604)
T ss_pred -chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHH
Confidence 444433333 33467888877665544444444555544444333332211 11222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 1061 MPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL 1140 (1623)
Q Consensus 1061 ~~l~~~~~~i~~~y~~~~r~l~~l~~~~~s~~~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1140 (1623)
+..++....+...+-+....+........+.+.....-.-+....|-.|+.|+.-.++..+..+.-.+.+......+.++
T Consensus 213 i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l 292 (604)
T COG4178 213 IIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRL 292 (604)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111111111122222222222222233344444555566777888888877666666665555555444444444333
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 000351 1141 AIRLEIVGGLMI--WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LP 1217 (1623)
Q Consensus 1141 ~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~~~~~l~~~~~~~~~~e~~~~aveRi~~~~~-~~ 1217 (1623)
.......+-+.+ -.....-....+.++ .+-+..+..-...+...+++++..+..+.+-...+.|+.++.. +.
T Consensus 293 ~~~~~gy~~~s~v~P~li~ap~~f~g~i~-----~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~ 367 (604)
T COG4178 293 TWFQLGYGWLSVVLPILIAAPRYFSGQIT-----FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367 (604)
T ss_pred HHhhhhhhHHHHHHHHHhccHhhhcCcCh-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222111 111111223444444 3334444445556677889999999999999999999999874 21
Q ss_pred --CCCCccccCCCCCCCCCC--CccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC
Q 000351 1218 --SEAPLVIESNRPPPGWPS--SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 1293 (1623)
Q Consensus 1218 --~e~~~~~~~~~~~~~wp~--~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~ 1293 (1623)
++++.........-..-. +..|+|+|++..-+++. ..|++.||.|+|||.+-|.|+||||||||+++|.|+.+--
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred hccCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC
Confidence 111110000000000001 46799999999987654 7899999999999999999999999999999999999999
Q ss_pred CcEEEECCEecCCCChHHhhhceEEEcCCCccccccHHhhcC-CCC--CCCHHHHHHHHHHhcHHHHHHhccCCcchhhh
Q 000351 1294 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1370 (1623)
Q Consensus 1294 ~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~NLd-~~~--~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~ 1370 (1623)
+|+|.+-. -+++-++||.|.+-.||+||-|. |.. .++|+++.++|.+|+|.++++++ ++.+..
T Consensus 447 ~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl-~~~~~W-- 512 (604)
T COG4178 447 SGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-DEEDRW-- 512 (604)
T ss_pred CCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHH-hccCcH--
Confidence 99986541 13588999999999999999886 433 37999999999999999999997 444443
Q ss_pred cCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEe
Q 000351 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 1447 (1623)
Q Consensus 1371 e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~ 1447 (1623)
..-||+||||||++||.|+++|++++|||+||+||+++|..+.+.+++..++.|||.|+||-....-.++.+-++
T Consensus 513 --~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 513 --DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred --hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 346999999999999999999999999999999999999999999999999999999999976665567766554
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=357.87 Aligned_cols=200 Identities=27% Similarity=0.416 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~~-------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||+|.+|.+ |+++|+..... ..++++.++++..++.+...+. ..+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999999976 99999973211 1234566777777766554443 347999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37899999999999977 9999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=368.91 Aligned_cols=211 Identities=27% Similarity=0.402 Sum_probs=182.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EcCCCcc-ccccHHhhcCCCCC--------C---CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHH
Q 000351 1319 IPQSPVL-FSGTVRFNLDPFSE--------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1386 (1623)
Q Consensus 1319 vpQdp~L-f~gTIr~NLd~~~~--------~---sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaL 1386 (1623)
+||++.+ +..|+++|+..... . .++++.++++..++.+. .......||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHH
Confidence 9999964 56799999964210 1 12235555555555433 333456799999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1387 ARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||++.+|+++||||||++||+++...+.+.|++..+ +.|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998753 7899999999999965 99999999999999999988753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=361.17 Aligned_cols=197 Identities=33% Similarity=0.483 Sum_probs=167.0
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEE
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~v 1319 (1623)
+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999964 36999999999999999999999999999999999999999999999998874 467889999
Q ss_pred cCCCcc---ccccHHhhcCCCCC-----------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1320 PQSPVL---FSGTVRFNLDPFSE-----------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1320 pQdp~L---f~gTIr~NLd~~~~-----------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
||+|.+ |+.|+++|+..... ..++++.++++..++.++.. ....+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHH
Confidence 999976 56899999963211 01234555666666554433 334579999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
|||||+.+|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999865 57899999999999977 9999999986 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=372.41 Aligned_cols=220 Identities=25% Similarity=0.355 Sum_probs=184.9
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCCC--Ch
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 1309 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~i--~~ 1309 (1623)
..|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 38 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 358999999999643 69999999999999999999999999999999999865 4999999999998643 33
Q ss_pred HHhhhceEEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHH
Q 000351 1310 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1310 ~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~---~~-s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQr 1381 (1623)
..+|++++|+||+|.+|.+|+++|+.... .. + ++.+.++++..++.+.+ ..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 45788999999999999889999997321 11 1 12344555555543222 1223445668999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
||++|||||+.+|++|||||||++||+++.+.+.+.|++..+++|||+|||+++.+.+ ||||++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999876 999999999999999999999
Q ss_pred hhcCC
Q 000351 1461 LSNEG 1465 (1623)
Q Consensus 1461 l~~~~ 1465 (1623)
.+++.
T Consensus 269 ~~~~~ 273 (286)
T PRK14275 269 FTNPK 273 (286)
T ss_pred HhCCC
Confidence 86544
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=383.17 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=174.7
Q ss_pred CcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCE----ecCCCChHHhh----hceEEEcCCCcc
Q 000351 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF----DIAKFGLMDLR----KILGIIPQSPVL 1325 (1623)
Q Consensus 1254 ~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~----di~~i~~~~lR----~~i~~vpQdp~L 1325 (1623)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||. |+...+...+| ++|+||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 6899999999999999999999999999999999999999999999996 67777665543 579999999999
Q ss_pred cc-ccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEE
Q 000351 1326 FS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397 (1623)
Q Consensus 1326 f~-gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~IL 1397 (1623)
|+ .|+++|+.... ..+. +.+.++++.+++.++..+ ...+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 59999996321 1222 335566666666544333 33579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHH
Q 000351 1398 VLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1398 lLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~ 1469 (1623)
|||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++.++...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999999998753 7899999999999866 999999999999999999999876544444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=368.22 Aligned_cols=221 Identities=27% Similarity=0.419 Sum_probs=187.7
Q ss_pred ccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC-----CcEEEECCEecCC--CCh
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGL 1309 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~-----~G~I~IdG~di~~--i~~ 1309 (1623)
+.|+++||+++|+.. .+|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.+++. .+.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 359999999999643 6999999999999999999999999999999999999985 8999999999853 344
Q ss_pred HHhhhceEEEcCCCccccccHHhhcCCC----CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHH
Q 000351 1310 MDLRKILGIIPQSPVLFSGTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1310 ~~lR~~i~~vpQdp~Lf~gTIr~NLd~~----~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQr 1381 (1623)
..+|+.++|+||++.+|..|+++|+... +..+ ++.+.++++..++.+++. ...+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 5678899999999999999999999632 1112 233556666666654433 234455678999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeC-----ceEee
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS-----GRVLE 1453 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----G~ive 1453 (1623)
||++|||||+++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999853 47999999999999976 999999999 99999
Q ss_pred ecChhHHhhcCCC
Q 000351 1454 YDTPEELLSNEGS 1466 (1623)
Q Consensus 1454 ~Gtp~eLl~~~~~ 1466 (1623)
.|+|+++..++..
T Consensus 237 ~~~~~~~~~~~~~ 249 (261)
T PRK14258 237 FGLTKKIFNSPHD 249 (261)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999765443
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=366.67 Aligned_cols=222 Identities=26% Similarity=0.408 Sum_probs=183.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC-----CcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~-----~G~I~IdG~di~~--i~~~ 1310 (1623)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999964 36999999999999999999999999999999999999874 8999999999875 3445
Q ss_pred HhhhceEEEcCCCccccc-cHHhhcCCC---CCC-CHHHHHH----HHHHhcHHHHHHhccCCcchhhhcCCCCCChhHH
Q 000351 1311 DLRKILGIIPQSPVLFSG-TVRFNLDPF---SEH-SDADLWE----ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~g-TIr~NLd~~---~~~-sd~~i~~----aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQr 1381 (1623)
.+|++++|+||++.+|.+ |+++|+... ... .+++..+ .++..++++.+ .........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV-------KDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh-------hhhhcCCcccCCHHHH
Confidence 778899999999999985 999999631 111 2332222 23333333222 1222344567999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987677999999999999987 999999999999999999999
Q ss_pred hhcCCChH
Q 000351 1461 LSNEGSSF 1468 (1623)
Q Consensus 1461 l~~~~~~f 1468 (1623)
..++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87654433
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=360.03 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=180.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++||+++|+.. ..|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999632 249999999999999999999999999999999999999999999999887654 3568999
Q ss_pred EcCCCccccc-cHHhhcCCC-CC------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPF-SE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~-~~------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+|.+ |+++|+... .. ..++++.++++..++.+.+.+.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999732 11 12345677777777766555443 47999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998753 7899999999999876 999999999999999999998753
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=361.68 Aligned_cols=206 Identities=22% Similarity=0.324 Sum_probs=175.6
Q ss_pred cEEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---h
Q 000351 1238 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---l 1312 (1623)
.|+++|++++|+++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996532 25999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hhceEEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1313 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1313 -R~~i~~vpQdp~Lf~g-TIr~NLd~~---~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
+++++|+||+|.+|.+ |+++|+... .... .+++.++++..++.+...+ ....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 3579999999999875 999998631 1111 2345566666666544433 335799999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceEeee
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1454 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1454 (1623)
++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998642 7899999999999888999999999999864
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=367.26 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=183.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i 1316 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988876655 4469
Q ss_pred EEEcCCCccccc-cHHhhcCCCCC-CC--------------HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhH
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFSE-HS--------------DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 1380 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~~-~s--------------d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQ 1380 (1623)
+|+||+|.+|.+ |+++|+..... .. +.+..+. .....++++.+ |++........+|||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYGQ 158 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHHH
Confidence 999999999986 99999974210 00 0000000 11223344443 56666667778899999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecCh
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp 1457 (1623)
|||++||||++.+|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 9999999999999999999999999999999999999998643 7899999999999977 999999999999999999
Q ss_pred hHHhh
Q 000351 1458 EELLS 1462 (1623)
Q Consensus 1458 ~eLl~ 1462 (1623)
+++..
T Consensus 239 ~~~~~ 243 (255)
T PRK11300 239 EEIRN 243 (255)
T ss_pred HHHhh
Confidence 98864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=365.17 Aligned_cols=223 Identities=24% Similarity=0.403 Sum_probs=184.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEe-----cCCCChHHh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~d-----i~~i~~~~l 1312 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+....
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999999 877766543
Q ss_pred ----hhceEEEcCCCc--ccc-ccHHhhcCC----CCCCCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCCChhH
Q 000351 1313 ----RKILGIIPQSPV--LFS-GTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 1380 (1623)
Q Consensus 1313 ----R~~i~~vpQdp~--Lf~-gTIr~NLd~----~~~~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~LSgGQ 1380 (1623)
|+.++|+||++. ++. .|+++|+.. +......++. ....++++.+ |++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 557999999984 343 478888742 1111111211 1234555554 454 45667778999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecCh
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp 1457 (1623)
|||++|||||+++|+||||||||++||+++.+.+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 7899999999999986 999999999999999999
Q ss_pred hHHhhcCCChHH
Q 000351 1458 EELLSNEGSSFS 1469 (1623)
Q Consensus 1458 ~eLl~~~~~~f~ 1469 (1623)
+++..++...|.
T Consensus 237 ~~~~~~~~~~~~ 248 (258)
T PRK11701 237 DQVLDDPQHPYT 248 (258)
T ss_pred HHHhcCCCCHHH
Confidence 999865543333
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=341.03 Aligned_cols=219 Identities=27% Similarity=0.441 Sum_probs=187.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~ 1317 (1623)
++++|++..|++. ++|+||||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|.||+..+++.. |..|+
T Consensus 4 L~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 4 LEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 7899999999764 79999999999999999999999999999999999999999999999999999999875 66799
Q ss_pred EEcCCCccccc-cHHhhcCCCCCC-CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~~-sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
||||.-.+|+. ||.|||...... .+++-. ...+++..+-+| -|.......+.+|||||||.++|||||+.+|+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 99999999976 999999742111 110100 011222333344 35556667778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
+|+|||||.+|-|.--+.|.++|++..+ +-||++|-++.....+ +||.+||++|+|+..|+.+||.+++
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999874 4599999999999876 9999999999999999999999764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=377.84 Aligned_cols=203 Identities=28% Similarity=0.469 Sum_probs=174.4
Q ss_pred EeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccc
Q 000351 1247 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 1326 (1623)
Q Consensus 1247 ~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf 1326 (1623)
+|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5643 369999999999999999999999999999999999999999999999999976 4456788999999999999
Q ss_pred cc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEE
Q 000351 1327 SG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1398 (1623)
Q Consensus 1327 ~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILl 1398 (1623)
.. |+++|+..+. ..+ ++++.++++..++.+ .......+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-----------AADRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999997432 112 223445555555433 3333446799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1399 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1399 LDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
|||||++||+.+.+.+++.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999999875 47899999999999987 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=373.05 Aligned_cols=220 Identities=27% Similarity=0.470 Sum_probs=187.0
Q ss_pred CCccEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-----CCCcEEEECCEecCCC--
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF-- 1307 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-----p~~G~I~IdG~di~~i-- 1307 (1623)
.+..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...
T Consensus 42 ~~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3446999999999965 369999999999999999999999999999999999986 6899999999998753
Q ss_pred ChHHhhhceEEEcCCCccccccHHhhcCCCCC--------------------CCHHHHHHHHHHhcHHHHHHhccCCcch
Q 000351 1308 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--------------------HSDADLWEALERAHLKDAIRRNSLGLDA 1367 (1623)
Q Consensus 1308 ~~~~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~--------------------~sd~~i~~aL~~~~l~~~i~~lp~gLdt 1367 (1623)
+...+|++++|+||++.+|++|+++|+..... ..++++.++++.+++.+ ++++
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVND 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhH
Confidence 45678889999999999999999999973210 01233555555555432 2334
Q ss_pred hhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEE-EE
Q 000351 1368 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI-LL 1445 (1623)
Q Consensus 1368 ~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI-~V 1445 (1623)
.+.....+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||+| ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 456667789999999999999999999999999999999999999999999998777899999999999876 9997 56
Q ss_pred EeCceEeeecChhHHhhc
Q 000351 1446 LDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1446 l~~G~ive~Gtp~eLl~~ 1463 (1623)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999998754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=377.59 Aligned_cols=225 Identities=21% Similarity=0.362 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeCC--CCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc----CCCcEEEECCEecCCCChHH
Q 000351 1238 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMD 1311 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~----p~~G~I~IdG~di~~i~~~~ 1311 (1623)
-|+++|++++|+. +...+|+||||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999953 22369999999999999999999999999999999999986 58999999999999888776
Q ss_pred hh----hceEEEcCCCc--ccc-ccHHhhcCC----C---CC------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhc
Q 000351 1312 LR----KILGIIPQSPV--LFS-GTVRFNLDP----F---SE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1371 (1623)
Q Consensus 1312 lR----~~i~~vpQdp~--Lf~-gTIr~NLd~----~---~~------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e 1371 (1623)
++ ++|+||||+|. ++. .||.+|+.. + .. ..++++.++|+.+++.+.- .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 54 47999999996 333 488888741 1 00 0123456666666664211 11233
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeC
Q 000351 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 1448 (1623)
Q Consensus 1372 ~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1448 (1623)
....||||||||++|||||+.+|+||||||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999998753 7899999999999977 999999999
Q ss_pred ceEeeecChhHHhhcCCChHHH
Q 000351 1449 GRVLEYDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1449 G~ive~Gtp~eLl~~~~~~f~~ 1470 (1623)
|+|+|.|+++++.+++...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999998765555543
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=370.60 Aligned_cols=213 Identities=26% Similarity=0.431 Sum_probs=181.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC--CChHHhhhce
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 1316 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~--i~~~~lR~~i 1316 (1623)
|+++||+++|+++ +++++|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.+++. .+...+|++|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 369999999999999999999999999999999999999999999999999853 2345678899
Q ss_pred EEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1317 GIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1317 ~~vpQdp--~Lf~gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+|+||+| .+|..|+++|+.... ..+. +++.++++..++.++ .......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-----------ENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-----------hcCChhhCCHHHHHHHHHH
Confidence 9999998 478889999996311 1222 234455555555332 3333457999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhc
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~ 1463 (1623)
||++.+|++|||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999875 37899999999999876 999999999999999999998753
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=358.63 Aligned_cols=200 Identities=27% Similarity=0.470 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++ +++++|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999964 369999999999999999999999999999999999999999999999998753 46788999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~---~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+|.+ |+++|+.... ..+ ++++.++++.. |++........+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERL-----------ELSEYANKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CChHHHhCcHhhCCHHHHHHHHHHHHH
Confidence 9999999876 9999986421 111 12233334433 444444455568999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 47899999999999876 9999999999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=350.18 Aligned_cols=198 Identities=21% Similarity=0.327 Sum_probs=148.9
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.+-+.||+|.|+.. +|.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+..-+ -|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 46789999999654 589999999999999999999999999999999999999999986533 455788
Q ss_pred EEcCCCc-ccc--ccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1318 IIPQSPV-LFS--GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1318 ~vpQdp~-Lf~--gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
..-|... -++ .|--+.|.-.-+..-++-+.+|...||..+.- |. ....||||||-|++||-.-++.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-------Ti---kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-------TI---KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-------eE---eeeecCCcchHHHHHHHHhcCCC
Confidence 8888753 122 25444442111223455666666655543211 11 12469999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccC-EEEEEeCceEeee-cChhH
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEY-DTPEE 1459 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~D-rI~Vl~~G~ive~-Gtp~e 1459 (1623)
+||||||||++||.++-..+-++|++. +..||+|+|+-..|...| ..+|+++-.|-|. |..++
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 999999999999999999999999984 557999999998887633 3455555444443 44443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=357.03 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=172.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHH---hhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR~~ 1315 (1623)
|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999433 36999999999999999999999999999999999999999999999999998776544 6789
Q ss_pred eEEEcCCCccc-cccHHhhcCCC---CCCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLF-SGTVRFNLDPF---SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf-~gTIr~NLd~~---~~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
++|+||+|.+| ..|+++|+... ...+++ ++.++++..++.+.. .....+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHHH
Confidence 99999999875 56999999742 122332 244455555554433 334467999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 47899999999999987 99999999999853
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=359.11 Aligned_cols=209 Identities=25% Similarity=0.360 Sum_probs=179.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. .++++|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4999999999964 36999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcCCCccccccHHhhcCCC----CCC-CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1318 IIPQSPVLFSGTVRFNLDPF----SEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1318 ~vpQdp~Lf~gTIr~NLd~~----~~~-sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
|+||++.+|+.|+++|+... ... .++++.+.++..++. ++.......+||||||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 111 122333444443332 233455667899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEe-CceEeeecChh
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLD-SGRVLEYDTPE 1458 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~-~G~ive~Gtp~ 1458 (1623)
+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998753 789999999999998899999995 66777888875
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=364.13 Aligned_cols=219 Identities=24% Similarity=0.381 Sum_probs=184.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc--C---CCcEEEECCEecCC--CChH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~--p---~~G~I~IdG~di~~--i~~~ 1310 (1623)
.|+++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3899999999964 369999999999999999999999999999999999975 4 58999999999864 3345
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCC---CCC-C----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPF---SEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~---~~~-s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
.+|++++|+||++.+|+.|+++|+... ... . ++++.++++.+++.+. +.........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHH
Confidence 678899999999999999999999631 111 1 2334455555554322 223345556789999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988667899999999999976 9999999999999999999987
Q ss_pred hcCC
Q 000351 1462 SNEG 1465 (1623)
Q Consensus 1462 ~~~~ 1465 (1623)
.++.
T Consensus 236 ~~~~ 239 (252)
T PRK14255 236 LNPK 239 (252)
T ss_pred cCCC
Confidence 6544
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=364.23 Aligned_cols=222 Identities=25% Similarity=0.451 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECC------EecCCCChHH
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------FDIAKFGLMD 1311 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG------~di~~i~~~~ 1311 (1623)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4999999999964 3699999999999999999999999999999999999999986666554 6777777778
Q ss_pred hhhceEEEcCCCccccc-cHHhhcCCC----CCCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHH
Q 000351 1312 LRKILGIIPQSPVLFSG-TVRFNLDPF----SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~g-TIr~NLd~~----~~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQ 1382 (1623)
+|++++|+||+|.+|.+ |+++|+... +...+++ +.++++..++.+.+ +......+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 89999999999999976 999999732 1112222 34445555543222 12234456689999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1383 rLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999965 9999999999999999999998
Q ss_pred hcCCChH
Q 000351 1462 SNEGSSF 1468 (1623)
Q Consensus 1462 ~~~~~~f 1468 (1623)
+.+...+
T Consensus 241 ~~~~~~~ 247 (257)
T PRK14246 241 TSPKNEL 247 (257)
T ss_pred hCCCcHH
Confidence 6554333
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=357.93 Aligned_cols=200 Identities=28% Similarity=0.468 Sum_probs=170.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCC--CChHHhhhce
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 1316 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~--i~~~~lR~~i 1316 (1623)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999965 369999999999999999999999999999999999999999999999999853 3456678899
Q ss_pred EEEcCCCcccc-ccHHhhcCCCC----CCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1317 GIIPQSPVLFS-GTVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1317 ~~vpQdp~Lf~-gTIr~NLd~~~----~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+|+||+|.+|. .|+++|+.... ..+.+ ++.++++.. |++........+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKV-----------GLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhhCccccCHHHHHHHHHH
Confidence 99999999986 59999996421 22222 233334433 444444555578999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceE
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1451 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1451 (1623)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999875 47899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=367.06 Aligned_cols=216 Identities=24% Similarity=0.367 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCC-------CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH
Q 000351 1238 SIKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~ 1310 (1623)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999521 23699999999999999999999999999999999999999999999999999765555
Q ss_pred HhhhceEEEcCCCc--cccc-cHHhhcCC----CCCC----CHHHHHHHHHHhcHH-HHHHhccCCcchhhhcCCCCCCh
Q 000351 1311 DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEH----SDADLWEALERAHLK-DAIRRNSLGLDAQVSEAGENFSV 1378 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~--Lf~g-TIr~NLd~----~~~~----sd~~i~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~~LSg 1378 (1623)
..|++++|+||+|. ++.. |+.+|+.. .... .++++.++++.+++. +.. .....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----------SYYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-----------hcCchhcCH
Confidence 66678999999985 4444 88888752 1111 123456666666652 222 223357999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1379 GQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
|||||++|||||+++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999865 37899999999999987 9999999999999999
Q ss_pred ChhHHhhcC
Q 000351 1456 TPEELLSNE 1464 (1623)
Q Consensus 1456 tp~eLl~~~ 1464 (1623)
+++++.+++
T Consensus 233 ~~~~~~~~~ 241 (267)
T PRK15112 233 STADVLASP 241 (267)
T ss_pred CHHHHhcCC
Confidence 999998654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=356.84 Aligned_cols=219 Identities=30% Similarity=0.491 Sum_probs=190.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------CcE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTV 681 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~i 681 (1623)
++++|+++.|+.. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++| .+.+. ..+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCeehHhcCHHHHhhcE
Confidence 4789999999642 36799999999999999999999999999999999999999998 44332 359
Q ss_pred EEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 682 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 682 ay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
+|++|++++++.||+||+.++.. ...++....++..++.+.++.+|.+..+..+..+.+|||||||||+||||++.+|+
T Consensus 79 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 79 GVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999988643 34445556667778888888898888888888999999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHHh
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 836 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 836 (1623)
++||||||++||+.+.+.+.+.+... .+|+|+|++||+++++..||++++|++|++++.|+++++.+..+.|..+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 99999999999999999998866543 4689999999999999889999999999999999999988776655543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=364.52 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC--------CcEEEECCEecCCCChH
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--------RGRILIDGFDIAKFGLM 1310 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~--------~G~I~IdG~di~~i~~~ 1310 (1623)
|+++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999643 6999999999999999999999999999999999999998 99999999999888888
Q ss_pred HhhhceEEEcCCCc-cccccHHhhcCCCC--C------CC---HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCCh
Q 000351 1311 DLRKILGIIPQSPV-LFSGTVRFNLDPFS--E------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 1378 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~-Lf~gTIr~NLd~~~--~------~s---d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSg 1378 (1623)
.+|+.++|+||++. +|..|+++|+.... . .+ ++.+.++++.. |+++.++.....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCH
Confidence 88888999999986 57789999996421 1 11 12234444444 445555556678999
Q ss_pred hHHHHHHHHHhhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEE
Q 000351 1379 GQRQLLSLSRALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLL 1446 (1623)
Q Consensus 1379 GQrQrLaLARALL---------~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl 1446 (1623)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.+ ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998653 6899999999999975 9999999
Q ss_pred eCceEeeecChhHHhh
Q 000351 1447 DSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1447 ~~G~ive~Gtp~eLl~ 1462 (1623)
++|++++.|+++++..
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999998864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=363.48 Aligned_cols=210 Identities=22% Similarity=0.277 Sum_probs=174.7
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccc--cCCCcEEEECCEecCCCChHHh-hhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDL-RKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~--~p~~G~I~IdG~di~~i~~~~l-R~~ 1315 (1623)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|++ +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999964 36999999999999999999999999999999999994 7999999999999988877654 455
Q ss_pred eEEEcCCCccccc-cHHhhcCCCC----C------CC----HHHHHHHHHHhcHHHHHHhccCCcch-hhhcCCC-CCCh
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFS----E------HS----DADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSV 1378 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~~----~------~s----d~~i~~aL~~~~l~~~i~~lp~gLdt-~v~e~G~-~LSg 1378 (1623)
++|+||+|.+|.+ |+++|+.... . .+ ++++.++++.. |++. ....... .|||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LS~ 147 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL-----------GMDEEFLNRSVNEGFSG 147 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHc-----------CCchhhcccccccCcCH
Confidence 9999999999876 8999985310 0 01 12233333333 3332 1222223 5999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc--cCEEEEEeCceEeeec
Q 000351 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1379 GQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~G 1455 (1623)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47899999999999976 7999999999999999
Q ss_pred ChhHHh
Q 000351 1456 TPEELL 1461 (1623)
Q Consensus 1456 tp~eLl 1461 (1623)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 998654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=335.65 Aligned_cols=207 Identities=26% Similarity=0.399 Sum_probs=175.9
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCC----eEE------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAV------------ 676 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~----~~~------------ 676 (1623)
..++++|+++.|+ ++.+|+|||++|++++++|++||+||||||||+++.+..+...|. .+.
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 5699999999997 467999999999999999999999999999999999988776531 121
Q ss_pred ---EcCcEEEEccCcccCcccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 677 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 677 ---~~~~iay~~Q~~~l~~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
+|++||.|+|.|--|..||+|||.+|.. .. ++..++.++.++|.+..+. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 3557999999999999999999999842 12 2446667777777765542 24456788999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 825 (1623)
||++|||||.-+|+|+|||||||||||.+..+|.+ ++..+.++-|+|+|||+++.... +|+...+..|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE-LITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH-HHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999976 66666678899999999998776 59999999999999999999
Q ss_pred HhhcC
Q 000351 826 LSNNG 830 (1623)
Q Consensus 826 l~~~~ 830 (1623)
+..+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=350.14 Aligned_cols=202 Identities=31% Similarity=0.469 Sum_probs=175.7
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------C
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------G 679 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------------~ 679 (1623)
.|.++|+++.|+. .++++|||++|+.||++++.|||||||||||++|+|+..|+.| .+..+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G-~I~~~~~~l~D~~~~~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAG-RIRLNGRVLFDVSNLAVRDR 77 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCc-eEEECCEeccchhccchhhc
Confidence 4788999999973 6799999999999999999999999999999999999999999 43332 3
Q ss_pred cEEEEccCcccC-cccHHHHHhcCCCC---------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 680 TVAYVPQVSWIF-NATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 680 ~iay~~Q~~~l~-~~Tv~enI~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
+||||+|+.-+| ..||.+||.||.+. ...+..+.++.|+|..--+..| ..|||||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 599999999887 79999999999632 1345666788888887666666 48999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhHHh
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
||||||..+|++||||||+++||++..+.+-..+.+-..+ |.|+++||||.++. +.||||++|++|+|...|+++|+.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 9999999999999999999999999999998877665444 89999999999985 568999999999999999999997
Q ss_pred hcC
Q 000351 828 NNG 830 (1623)
Q Consensus 828 ~~~ 830 (1623)
...
T Consensus 227 ~~P 229 (345)
T COG1118 227 DHP 229 (345)
T ss_pred cCC
Confidence 654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=358.34 Aligned_cols=210 Identities=27% Similarity=0.448 Sum_probs=181.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 38999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCcccc-ccHHhhcCCC---CCC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFS-GTVRFNLDPF---SEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~---~~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+|. .|+++|+... ... .++++.++++..++.+++.+ ...+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHHHHHHH
Confidence 999999985 6999999631 111 12345566666666554443 3457999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcC
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~ 1464 (1623)
+++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999998653 7999999999999876 9999999999999999999987643
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=363.81 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=178.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC---CcEEEECCEecCCC-----Ch
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKF-----GL 1309 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~---~G~I~IdG~di~~i-----~~ 1309 (1623)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999964 36999999999999999999999999999999999999986 49999999998654 23
Q ss_pred HHhhhceEEEcCCCccccc-cHHhhcCCCCC---------------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCC
Q 000351 1310 MDLRKILGIIPQSPVLFSG-TVRFNLDPFSE---------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1373 (1623)
Q Consensus 1310 ~~lR~~i~~vpQdp~Lf~g-TIr~NLd~~~~---------------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1373 (1623)
..+|++++|+||++.+|.+ |+++|+..... ..++++.++++..++. .......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-----------HFAHQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-----------HHHhCCc
Confidence 5668889999999998875 99999963210 0122344445544443 3334455
Q ss_pred CCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCce
Q 000351 1374 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGR 1450 (1623)
Q Consensus 1374 ~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1450 (1623)
..||||||||++||||++.+|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999999999875 37899999999998765 99999999999
Q ss_pred EeeecChhHH
Q 000351 1451 VLEYDTPEEL 1460 (1623)
Q Consensus 1451 ive~Gtp~eL 1460 (1623)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999986
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=353.47 Aligned_cols=201 Identities=24% Similarity=0.397 Sum_probs=174.1
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
++++||+++|+. +++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 578999999999999999999999999999999999999999999999987644 36788999
Q ss_pred EcCCCccccc-cHHhhcCC-CC-C-----CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFSG-TVRFNLDP-FS-E-----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~-~~-~-----~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||+|.+|.+ |+++|+.. +. . ..++++.++++..++.+...+.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 99999963 11 1 12345666777777765554443 47999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecC
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gt 1456 (1623)
+++|+|+||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 7899999999999876 99999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=349.06 Aligned_cols=201 Identities=55% Similarity=0.982 Sum_probs=182.3
Q ss_pred EEEEeeEEEcCCCCC--CCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcCcEEEEccCcccCc
Q 000351 615 ISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 692 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~--~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~iay~~Q~~~l~~ 692 (1623)
++++|+++.|++..+ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++| .+.+.++|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcCEEEEEecCchhcc
Confidence 478999999974211 3799999999999999999999999999999999999999999 7778889999999999999
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcC
Q 000351 693 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772 (1623)
Q Consensus 693 ~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD 772 (1623)
.|++||+.++..+++++..++.+.+++.+.++.+|.|.+|.++..+.+||||||||++||||++.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999986666667778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhhcCEEEEEeCCE
Q 000351 773 AHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGM 816 (1623)
Q Consensus 773 ~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 816 (1623)
++..+++++.++... .+|+|+|++||+.+.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999988665533 34799999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=377.48 Aligned_cols=212 Identities=23% Similarity=0.394 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC----ChHHhhh
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 1314 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i----~~~~lR~ 1314 (1623)
|++ |++++|+.. .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+. +....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999642 23 99999999999999999999999999999999999999999999998653 2345678
Q ss_pred ceEEEcCCCccccc-cHHhhcCCC-CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~g-TIr~NLd~~-~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
+++|+||++.+|+. |+++|+.+. ....++++.++++..++.++.. ....+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999975 999999742 2233455666676666544443 3346899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 9999999999999999999999999998754 6899999999999877 999999999999999999999977643
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=364.37 Aligned_cols=202 Identities=31% Similarity=0.452 Sum_probs=178.5
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEE
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVA 682 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~ia 682 (1623)
.|+++|+++.|++. .+++|+||+|++||+++++|||||||||||++|+|+.+|++| .+.+. +.||
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G-~I~i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG-EILIDGRDVTDLPPEKRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhHCCEE
Confidence 58999999999741 299999999999999999999999999999999999999999 55443 3699
Q ss_pred EEccCcccC-cccHHHHHhcCCCC-------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 683 YVPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l~-~~Tv~enI~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
+|+|+.-|+ ..||+|||.|+... .++++.++.+..++.+.++..|. .||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 999999997 67999999998543 24677888899999999998884 799999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|.++|+++|||||+|+||++.+..+-..+.+... -|.|+|.||||..++. .+|||++|++|+|.+.|++.|+.++.
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 9999999999999999999999988877666333 3899999999988765 58999999999999999999998664
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=330.16 Aligned_cols=506 Identities=19% Similarity=0.223 Sum_probs=342.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000351 292 LRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGY-IYAFSIFVGVVL-GVLCEAQYFQNVMRVG 369 (1623)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~r~~ 369 (1623)
+-.++|.++|.++....+.++..+.. ..++..+-+++.+.+....++ .+.+++.+..++ +.++. ....-+|
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~----lg~t~~g 76 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQ----LGLTTLG 76 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 44678899998888776666554433 334444444443322211111 111111111111 11111 1222233
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000351 370 FRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALL 449 (1623)
Q Consensus 370 ~~ir~~L~~~i~~K~l~l~~~~~~~~~~g~i~nlms~Dv~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~g~~~ 449 (1623)
.+.-..++..+.+|.+.-+....++.+++.++..++.|+..|.-.+..+.++..+.+-+..++..|++..+..+++.++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444555666778888887778888899999999999999997777888888777777778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000351 450 LVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRK-AQFLAACNSF 528 (1623)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~~~~~~i~~~r~~el~~~~~-~~~l~~~~~~ 528 (1623)
+++.+..+.+...+.-+...+..+.-|+..+..+.+++|-|.+|++.--... ...+.-...-+..++ ..+...+...
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~--~h~~~~~~~a~~~r~~~~~~n~f~~l 234 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY--VHNNLYIPDAQEYRHHIIRANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH--HHhhhcCcchHHHHhhhhhhhHHHHH
Confidence 8888888888888888888999999999999999999999999987622111 111110000001111 1111111111
Q ss_pred HHHHHH-HHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q 000351 529 ILNSIP-VLVTVVSFGMFTLL-GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP 606 (1623)
Q Consensus 529 ~~~~~~-~~~~~~~f~~~~~~-~~~lt~~~~ft~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 606 (1623)
..+... ++..++....|+.. -+--+...+.|....+-.++.|+.++...++.+..|.++++||.++-..|+..+.+.+
T Consensus 235 a~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~ 314 (546)
T COG4615 235 AVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRP 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCC
Confidence 111111 12222222222221 1222333455555555668899999999999999999999999998776655444433
Q ss_pred CCCCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcCc------
Q 000351 607 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------ 680 (1623)
Q Consensus 607 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~------ 680 (1623)
...+.-..++++|+.|+|++. ..-+..||++|++||++-|+|.||||||||+++|.|++.|++| .+.++|+
T Consensus 315 q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG-~I~ldg~pV~~e~ 391 (546)
T COG4615 315 QAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVSAEQ 391 (546)
T ss_pred CcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCC-ceeECCccCCCCC
Confidence 333445679999999999853 3788999999999999999999999999999999999999999 5555442
Q ss_pred -------EEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 681 -------VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 -------iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
++-++-+-|+|+.++ .++. .+++..++-++.-.+.+..+ +.+|..+. ..||-|||.|+|+-
T Consensus 392 ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs~-----~kLStGQkKRlAll 460 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFSN-----LKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCcccc-----cccccchHHHHHHH
Confidence 344445555554332 2222 34444444444444444333 23333332 47999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 820 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 820 (1623)
-|++-+.||++|||=-+--||+-+++.++.++-.+ ..|||++.||||-++...|||++.+++|++++.
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999999999999887643 359999999999999999999999999999863
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=360.30 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=179.9
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC----CCcEEEECCEecCCCChHHhh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLR 1313 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p----~~G~I~IdG~di~~i~~~~lR 1313 (1623)
.|+++|++++| + .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 3 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred hceEEEcCCCc-ccc--ccHHhhcCC----CC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHH
Q 000351 1314 KILGIIPQSPV-LFS--GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp~-Lf~--gTIr~NLd~----~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLa 1385 (1623)
+.++|+||+|. .|. .|+.+|+.. ++ ...++++.++++.+++.+. ++.++.....||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 477777532 11 2234556666776655321 12345566789999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999999976 99999999999999999999986
Q ss_pred cCCC
Q 000351 1463 NEGS 1466 (1623)
Q Consensus 1463 ~~~~ 1466 (1623)
+...
T Consensus 231 ~~~~ 234 (254)
T PRK10418 231 APKH 234 (254)
T ss_pred CCCC
Confidence 5443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=368.22 Aligned_cols=203 Identities=34% Similarity=0.502 Sum_probs=179.2
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcE
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTV 681 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~i 681 (1623)
..++++|++++|+ +..+++|+||+|++||+++++|||||||||+|++|+|+..|++| .+.+. +.|
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhhccc
Confidence 4699999999997 46899999999999999999999999999999999999999999 55443 359
Q ss_pred EEEccCcccC-cccHHHHHhcCCC----CC-H---HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 682 AYVPQVSWIF-NATVRDNILFGSA----FE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 682 ay~~Q~~~l~-~~Tv~enI~~g~~----~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
++|+|+.-|| +.||+|||.||.. .. + +++.++++..+|.+..+..| ..||||||||||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 9999999998 7899999999965 12 2 36778888888887666666 48999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcch-hhhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|||..+|+++|||||+|+||.+.++++-..+..... .|.|.|+||||.+. +..+|||++|++|+|.+.|+++|+....
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999999999888776433 39999999999887 5678999999999999999999998764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=400.61 Aligned_cols=220 Identities=24% Similarity=0.367 Sum_probs=151.9
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhh------ccc---cCCCcEE-----------
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF------RIV---ELERGRI----------- 1297 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~------rl~---~p~~G~I----------- 1297 (1623)
.|+++|++. ..|+|+|++|++||.+||+|+||||||||+.-++ ++. .+..+..
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 478888852 3599999999999999999999999999998764 111 1222333
Q ss_pred -EECCEecCCCC----------hHHhhhce---------EEEcCCCcccc-----------ccHHhhcCCCCC-------
Q 000351 1298 -LIDGFDIAKFG----------LMDLRKIL---------GIIPQSPVLFS-----------GTVRFNLDPFSE------- 1339 (1623)
Q Consensus 1298 -~IdG~di~~i~----------~~~lR~~i---------~~vpQdp~Lf~-----------gTIr~NLd~~~~------- 1339 (1623)
.||-.++..-+ .+.+|.-. ++-++...+.+ |+++.|+.+..+
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 33333322111 02233322 33333322222 345544432211
Q ss_pred -----------------CCHHH-----HHHHHHHh-------cHHHHHHhccCCcch-hhhcCCCCCChhHHHHHHHHHh
Q 000351 1340 -----------------HSDAD-----LWEALERA-------HLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1340 -----------------~sd~~-----i~~aL~~~-------~l~~~i~~lp~gLdt-~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
.+-.+ +.++++.. ...+.++. .|++. .++.....||||||||+.|||+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~--vgL~~l~l~~~~~tLSgGEkQRl~LAra 844 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVD--VGLGYIKLGQPATTLSGGEAQRVKLAKE 844 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHH--CCCCcccccCCcccCCHHHHHHHHHHHH
Confidence 11111 22332221 01122333 26654 4677778999999999999999
Q ss_pred hhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEEE------eCceEeeecChhH
Q 000351 1390 LLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRVLEYDTPEE 1459 (1623)
Q Consensus 1390 LL~~p---~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl------~~G~ive~Gtp~e 1459 (1623)
|+++| +++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|++
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999 9999999999999999999999999875 578999999999999889999999 7999999999999
Q ss_pred HhhcCCC
Q 000351 1460 LLSNEGS 1466 (1623)
Q Consensus 1460 Ll~~~~~ 1466 (1623)
+.+++.+
T Consensus 925 l~~~~~s 931 (943)
T PRK00349 925 VAKVEAS 931 (943)
T ss_pred HHhCccc
Confidence 9876643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=349.17 Aligned_cols=446 Identities=17% Similarity=0.188 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCCH-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000351 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFAS-----GKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVL 434 (1623)
Q Consensus 361 ~~~~~~r~~~~ir~~L~~~i~~K~l~l~~~~~~~~~~-----g~i~nlms~Dv~~i~~~~-~~~~~~~~~pl~i~i~~~l 434 (1623)
..+...++..+.|..|...+.++.+.-....+-.... -..=.++..|+..+.+.. .....+..+.+.++.-..+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677889999999999999999877543322211 123367888888887743 3334555555555555556
Q ss_pred HHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccH
Q 000351 435 LYNELG---------------VASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN 499 (1623)
Q Consensus 435 L~~~lg---------------~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~~~e~ 499 (1623)
||...| ...++.++-+++...+..++++...+..-+..+.-..-......+.++...|-+|+-|+
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 664443 22223333333333344455555555555555555555556667888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000351 500 SFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVS--FGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNM 577 (1623)
Q Consensus 500 ~~~~~i~~~r~~el~~~~~~~~l~~~~~~~~~~~~~~~~~~~--f~~~~~~~~~lt~~~~ft~l~l~~~l~~pl~~l~~~ 577 (1623)
...+++++.-..-++..++......-...+......+..++- .++-.++.|+++.+....+-..|+.+...+..+...
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~ 345 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDN 345 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887766555554433332222222222111111111111 111224578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc--c--CCCCCC------CCCCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEE
Q 000351 578 ITQVVNANVSLKRMEEFLLAEEKI--L--LPNPPL------TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVA 647 (1623)
Q Consensus 578 ~~~~~~a~~s~~RI~~fL~~~e~~--~--~~~~~~------~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ 647 (1623)
++.+.+-+++..|+.+|-..-+.. + .+.... ...+..|+++|++..-++ +++.+++.||++++|+.+.
T Consensus 346 ~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~ll 423 (604)
T COG4178 346 YDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPGERLL 423 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC--CCeeeccceeeeCCCCEEE
Confidence 999999999999999997543210 0 000000 001467999999999775 4689999999999999999
Q ss_pred EEcCCCCChhHHHHHHcCCccCCCCCeEEEcC-cEEEEccCcccCcccHHHHHhcCC---CCCHHHHHHHHHHhCchhHH
Q 000351 648 IVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDL 723 (1623)
Q Consensus 648 ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~-~iay~~Q~~~l~~~Tv~enI~~g~---~~~~~~~~~~~~~~~l~~~~ 723 (1623)
|.|+||||||||+++|+|+.|--+|......+ .+-|+||.|.+..||.||-|++.. +++++.+.+++..|+|.+-.
T Consensus 424 I~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~ 503 (604)
T COG4178 424 ITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503 (604)
T ss_pred EECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHH
Confidence 99999999999999999999988884333323 489999999999999999999874 27889999999999999988
Q ss_pred hcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchh
Q 000351 724 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 803 (1623)
Q Consensus 724 ~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 803 (1623)
+.+.+-++ -...|||||||||++||.++++|++++|||.|||||++++..+++. ++..+.+.|+|-|.|+....
T Consensus 504 ~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 504 ERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKEELPDATVISVGHRPTLW 577 (604)
T ss_pred HHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHhhCCCCEEEEeccchhhH
Confidence 88765332 3457999999999999999999999999999999999999999975 55567899999999999888
Q ss_pred hhcCEEEEEeC
Q 000351 804 SQVDRIILVHE 814 (1623)
Q Consensus 804 ~~~d~i~~l~~ 814 (1623)
...++.+.+.+
T Consensus 578 ~~h~~~l~l~~ 588 (604)
T COG4178 578 NFHSRQLELLD 588 (604)
T ss_pred HHHhhheeecc
Confidence 87777776654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=431.23 Aligned_cols=220 Identities=27% Similarity=0.394 Sum_probs=190.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+++..++|+|+||+|++||++||+|+||||||||+++|.|++.|++|+|.++|.|+.+ .....|+++|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996433479999999999999999999999999999999999999999999999999975 5667889999
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
+|||++.+|+. |++|||..+. ..+. +++.+.++.. |++........+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-----------gL~~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----------GLHHKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999975 9999997532 1222 2344444444 44444455567899999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChH
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f 1468 (1623)
|+.+|+|||||||||+||+.+.+.+++.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++.+..|
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy 1155 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcE
Confidence 99999999999999999999999999999998778999999999999987 99999999999999999999987765444
Q ss_pred H
Q 000351 1469 S 1469 (1623)
Q Consensus 1469 ~ 1469 (1623)
+
T Consensus 1156 ~ 1156 (2272)
T TIGR01257 1156 Y 1156 (2272)
T ss_pred E
Confidence 3
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=360.50 Aligned_cols=202 Identities=23% Similarity=0.338 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998642 346899
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCCH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~---~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+||++.+|. .|+++|+.... .... +++.++++..++. ........+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-----------GAEKRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999887 59999996421 1122 2344445554443 333444568999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEe--CceEeeecChh
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1458 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~ive~Gtp~ 1458 (1623)
+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.++++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999863 37999999999999876 99999998 59999988754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=353.15 Aligned_cols=168 Identities=24% Similarity=0.384 Sum_probs=131.9
Q ss_pred ccceeeEe-----CCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCc-ccccc
Q 000351 1256 LHGLSFTI-----PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LFSGT 1329 (1623)
Q Consensus 1256 L~~isl~I-----~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~-Lf~gT 1329 (1623)
+.++.|++ ..||.+|++||||-||||++++|.|.++|++|. ..+ -+++|=||--. -|+||
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gt 417 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGT 417 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCc
Confidence 34455554 457899999999999999999999999999998 222 25888888542 48899
Q ss_pred HHhhcCCCCC--CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCC
Q 000351 1330 VRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407 (1623)
Q Consensus 1330 Ir~NLd~~~~--~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD 1407 (1623)
|++-|.--.. +.+. ..+.-|. .|..++..+...-.+|||||.||+++|-||.|++++.+||||+|.||
T Consensus 418 V~~~l~~~~~~~~~~s---------~~~~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD 487 (591)
T COG1245 418 VEDLLRSAIRSAFGSS---------YFKTEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487 (591)
T ss_pred HHHHHHHhhhhhcccc---------hhHHhhc-CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc
Confidence 9876531100 1111 1111111 25667777777778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEe
Q 000351 1408 VRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD 1447 (1623)
Q Consensus 1408 ~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~ 1447 (1623)
.+-.-.+-++||+.. .++|.++|-|++..+.- +||++|.+
T Consensus 488 vEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 488 VEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999865 46899999999999877 99999997
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=352.37 Aligned_cols=215 Identities=31% Similarity=0.529 Sum_probs=187.6
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------CcE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTV 681 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~i 681 (1623)
++++|+++.|++..++++|+|+||++++|++++|+|+||||||||+++|+|+++|++| .+.+. ..+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC-EEEECCEehhhcCHHHHHhhE
Confidence 4689999999753345799999999999999999999999999999999999999999 44332 259
Q ss_pred EEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 682 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 682 ay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
+|++|++.+++.|++||+.++.. ...++....++.+++.+.++.+|.|.++..+....+||||||||++||||++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999998643 34455566677788888888899888888888889999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcCh
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 831 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 831 (1623)
++||||||++||+.+.+.+.+.+.... +|+|+|++||+++++..||+|++|++|++++.|+.+++.....
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 999999999999999999988665444 7899999999999998899999999999999999888765443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=348.44 Aligned_cols=204 Identities=29% Similarity=0.528 Sum_probs=178.7
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE-------------EcC
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 679 (1623)
..++++|++|.|++. .++|+|+||+|++|+.++|+|+||||||||+++|.|.++|++|.... +++
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence 358999999999853 68999999999999999999999999999999999999999984311 245
Q ss_pred cEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
+||||+|+| .+|..||.|.|.||.. .++ ++..++++.|++.+..+..| .+||||||||||
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRva 148 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVA 148 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHH
Confidence 699999999 6789999999999842 333 45677888999988877666 489999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
||.+|..+|+++|||||||+||+...+.+.+.+.+.... |+|+|++|||++.+.. ||++++|++|+++.+|+++++.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999876664444 6899999999999875 99999999999999999988875
Q ss_pred c
Q 000351 829 N 829 (1623)
Q Consensus 829 ~ 829 (1623)
+
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=351.50 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=176.2
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.... ++.+++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EcCCCcccc-ccHHhhcCCC---CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1319 IPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~---~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
+||++.+|. .|+++|+..+ ....++++.++++..++.+... ....+||||||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999999632 1234556777777766654433 233579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhH
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~e 1459 (1623)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999864 47899999999999865 99999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=338.51 Aligned_cols=192 Identities=29% Similarity=0.449 Sum_probs=161.0
Q ss_pred EEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc---------------
Q 000351 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------- 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------------- 678 (1623)
++++|+++.|..+. ..++|+++||+|++||+++|+|||||||||||++|.|...|++| .+.+.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G-~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG-EVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEECCEEcCcCCHHHHHHH
Confidence 57899999997432 24799999999999999999999999999999999999999988 43332
Q ss_pred --CcEEEEccCcccC-cccHHHHHhcC----CCCC---HHHHHHHHHHhCchhHHh-cCCCCCcccccCCCCccChHHHH
Q 000351 679 --GTVAYVPQVSWIF-NATVRDNILFG----SAFE---PARYEKAIDVTSLQHDLD-LLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 679 --~~iay~~Q~~~l~-~~Tv~enI~~g----~~~~---~~~~~~~~~~~~l~~~~~-~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
..|||++|+..|. +.|++|||.+. .... .++.+..++..+|.+... ..| .+|||||||
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQ 149 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQ 149 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHH
Confidence 3599999998875 78999999853 2111 344556666667776555 445 489999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 818 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 818 (1623)
||||||||+.+|++++.||||.+||.++++.|++.+.... ..|+|+|+||||......|||++.|+||++.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999999999999999999998665543 3489999999999999999999999999854
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=374.43 Aligned_cols=211 Identities=23% Similarity=0.371 Sum_probs=178.1
Q ss_pred EEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC----hHHhhhceEE
Q 000351 1243 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 1318 (1623)
Q Consensus 1243 nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~----~~~lR~~i~~ 1318 (1623)
|++++|++. . + |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~~--~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF--S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE--E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 3 5 999999999999999999999999999999999999999999999986532 2356788999
Q ss_pred EcCCCccccc-cHHhhcCCCC-CCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFS-EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~-~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
+||++.+|.+ |+++|+.... ... ++++.+.++.. |++........+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999976 9999997421 111 12244444444 44444455557899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChH
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f 1468 (1623)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999999998653 7899999999999876 99999999999999999999987665444
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=349.05 Aligned_cols=211 Identities=29% Similarity=0.512 Sum_probs=187.2
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
.++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++| .+.+. ..
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG-QILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEeHHHcCHHHHhhh
Confidence 4789999999963 34699999999999999999999999999999999999999999 44332 35
Q ss_pred EEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCC
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~ 759 (1623)
++|++|++++++.|++||+.++.+ ...++....++.+++.+.++.+|.|..+.++....+|||||||||+|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999998899999998753 3445667778888999999999988888888899999999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEK-LMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999886554 346899999999999998899999999999999999887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=350.06 Aligned_cols=217 Identities=32% Similarity=0.572 Sum_probs=189.3
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------CcE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTV 681 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~i 681 (1623)
++++|+++.|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++| .+.+. ..+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG-SILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEhhhCCHHHHHhhE
Confidence 468999999963 35799999999999999999999999999999999999999999 44432 249
Q ss_pred EEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 682 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 682 ay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
+|++|++++++.|++||+.++.. ...+.....++.+++.+.++.+|.|.++.++.+..+||||||||++|||||+.+|+
T Consensus 78 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 78 GVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998743 34455666778888988889999999998999999999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChhHHH
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 835 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1623)
++||||||++||+++.+.+.+.+.... +|+|+|++||+.+.+..||++++|++|++++.|+.+++......++.
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 999999999999999999987665433 48999999999999988999999999999999999888765544433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=350.30 Aligned_cols=215 Identities=33% Similarity=0.541 Sum_probs=188.1
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------CcE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTV 681 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~i 681 (1623)
|+++|++++|++. ++++++|+||++++|++++|+||||||||||+++|+|+++|++| .+.+. ..+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG-RILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC-EEEECCEEhhhCCHHHHHhhE
Confidence 4789999999642 24799999999999999999999999999999999999999999 44332 359
Q ss_pred EEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 682 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 682 ay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
+|++|++++++.|++||+.++.. .....+....+.+++.+.++.+|.|..+..+....+||||||||++||||++.+|+
T Consensus 79 ~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 79 GLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998743 34556667778888888999998888888888999999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcChh
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 832 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 832 (1623)
++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+..||++++|++|++++.|+.+++......
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 229 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALER-LMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGV 229 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcc
Confidence 9999999999999999999876544 4468999999999999988999999999999999999888755443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=335.76 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=161.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+...+++++|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996542369999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEE
Q 000351 1319 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1398 (1623)
Q Consensus 1319 vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILl 1398 (1623)
+||++.+|+.|+++|+ ||+|||||++||||++++|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999987 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCce
Q 000351 1399 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 1450 (1623)
Q Consensus 1399 LDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1450 (1623)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=353.54 Aligned_cols=223 Identities=24% Similarity=0.364 Sum_probs=194.7
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------c
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------R 678 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~ 678 (1623)
...++++|++++|+.. .+.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++| .+.+ +
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC-eEEECCEEhhhCCHHHHh
Confidence 3569999999999742 35799999999999999999999999999999999999999999 4433 2
Q ss_pred CcEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcC
Q 000351 679 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 758 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~ 758 (1623)
..|+|++|+|+++++|++||+........+++..+++..++.+.++.+|.|.++.+++.+.+||||||||++||||++++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 35999999999999999999976544455667778888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcC-hhHHHhH
Q 000351 759 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLM 837 (1623)
Q Consensus 759 ~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 837 (1623)
|+++||||||++||+++.+.+++.+. ...+++|+|++||+++.+..||+|++|++|++++.|+++++.... +.+.+++
T Consensus 175 p~llllDEPt~gLD~~~~~~l~~~l~-~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 175 SSILIMDEATASIDMATENILQKVVM-TAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHH-HhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999988877554 344689999999999999889999999999999999999987653 4455544
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=338.58 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=188.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~ 1317 (1623)
++.+|++++|+.- .+++||||++++||++||+|||||||||++|++.|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6789999999753 69999999999999999999999999999999999999999999999999999999886 44589
Q ss_pred EEcCCCccccc-cHHhhcCCCCC------------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~~~------------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
--+|.+-+|++ ||-||+.-... ....+-.++.++ +.+.++. .||+....+...+||+|||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~--vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEF--VGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHH--cCCchhhcchhhcCChhHhHHH
Confidence 99999999987 99999852100 000111222222 2233333 3777777888889999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
-|||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-|||+.+++ ||||+||+.|+++..|+|+|..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999874 4899999999999998 9999999999999999999998
Q ss_pred hcC
Q 000351 1462 SNE 1464 (1623)
Q Consensus 1462 ~~~ 1464 (1623)
+++
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 764
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=353.22 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc---CCCcEEEECCEecCCCChHHhh
Q 000351 1239 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~---p~~G~I~IdG~di~~i~~~~lR 1313 (1623)
+.|+||+++|+.. .+++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999654 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hceEEEcCCCccccc-cHHhhcCCCCC-CCHHHHHHHHHHhcHHH-HHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1314 KILGIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~g-TIr~NLd~~~~-~sd~~i~~aL~~~~l~~-~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
++++|+||++.+|.+ |+++|+..... .......+........+ .++. .+++........+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999973210 00000001111111112 2222 2444444555678999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCc-hhhhc-cCEEEEEeCceEeeec
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl-~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+++|+||||||||++||+.+.+.+.+.|++.. +++|+|++||++ ..+.. ||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 478999999998 46655 9999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=357.66 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEe-----cCCCChHHh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~d-----i~~i~~~~l 1312 (1623)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 48999999999643 68999999999999999999999999999999999999999999999988 776665533
Q ss_pred ----hhceEEEcCCCc--cc-cccHHhhcCC----CCCCCHHHHHHHHHHhcHHHHHHhccCCcc-hhhhcCCCCCChhH
Q 000351 1313 ----RKILGIIPQSPV--LF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 1380 (1623)
Q Consensus 1313 ----R~~i~~vpQdp~--Lf-~gTIr~NLd~----~~~~sd~~i~~aL~~~~l~~~i~~lp~gLd-t~v~e~G~~LSgGQ 1380 (1623)
++.++++||+|. ++ ..|+.+|+.. +......+. ...+.++++.+ |++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 467999999985 22 3488888731 111111111 12344555554 454 45666778899999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecCh
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp 1457 (1623)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988643 7899999999999986 999999999999999999
Q ss_pred hHHhhcCCChHH
Q 000351 1458 EELLSNEGSSFS 1469 (1623)
Q Consensus 1458 ~eLl~~~~~~f~ 1469 (1623)
+++..++...|.
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T TIGR02323 234 DQVLDDPQHPYT 245 (253)
T ss_pred HHHhcCCCCHHH
Confidence 999865443343
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=357.92 Aligned_cols=224 Identities=24% Similarity=0.374 Sum_probs=185.2
Q ss_pred EEEEEEEEEeCCC-------CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH-
Q 000351 1239 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM- 1310 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~- 1310 (1623)
|+++||+++|+.. .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999731 24799999999999999999999999999999999999999999999999999887653
Q ss_pred --HhhhceEEEcCCCc--cc-cccHHhhcCCC----CCCCHHHHHHHHHHhcHHHHHHhccCCcch-hhhcCCCCCChhH
Q 000351 1311 --DLRKILGIIPQSPV--LF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 1380 (1623)
Q Consensus 1311 --~lR~~i~~vpQdp~--Lf-~gTIr~NLd~~----~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt-~v~e~G~~LSgGQ 1380 (1623)
.+|+.++|+||++. ++ ..|+++|+... ...+. .-....+.+.++.+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 46789999999983 44 35999997421 11111 11122344555543 6653 4566677899999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecCh
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1381 rQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp 1457 (1623)
|||++|||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998653 7899999999999986 999999999999999999
Q ss_pred hHHhhcCCChHHH
Q 000351 1458 EELLSNEGSSFSK 1470 (1623)
Q Consensus 1458 ~eLl~~~~~~f~~ 1470 (1623)
+++.. .++.|..
T Consensus 237 ~~~~~-~~~~~~~ 248 (268)
T PRK10419 237 GDKLT-FSSPAGR 248 (268)
T ss_pred hhccC-CCCHHHH
Confidence 99875 3444443
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=351.51 Aligned_cols=202 Identities=26% Similarity=0.388 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH---Hhh
Q 000351 1239 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~---~lR 1313 (1623)
++++|++++|+++ ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14699999999999999999999999999999999999999999999999999877653 467
Q ss_pred hceEEEcCCCcccc-ccHHhhcCCCC----CCCHH----HHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHH
Q 000351 1314 KILGIIPQSPVLFS-GTVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 1384 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~-gTIr~NLd~~~----~~sd~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrL 1384 (1623)
+.++|+||+|.+|. .|+.+|+.+.. ..+.+ ++.++++..++ +........+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGL-----------GDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHH
Confidence 88999999999987 69999997421 12222 24444444444 4444444568999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhccCEEEEEeCceE
Q 000351 1385 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 1451 (1623)
Q Consensus 1385 aLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1451 (1623)
+||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998753 7999999999997666999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=317.40 Aligned_cols=199 Identities=28% Similarity=0.484 Sum_probs=172.0
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC-----------cEEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----------TVAY 683 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~-----------~iay 683 (1623)
+.++++.|+|+.. =-..+++|++||+++|+||+||||||||++|+|+..|.+| .+.+++ .++.
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G-~i~i~g~d~t~~~P~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG-EILINGVDHTASPPAERPVSM 75 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCc-eEEEcCeecCcCCcccCChhh
Confidence 5678899999742 1346889999999999999999999999999999999999 555443 5999
Q ss_pred EccCcccC-cccHHHHHhcCCC-------CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHH
Q 000351 684 VPQVSWIF-NATVRDNILFGSA-------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 684 ~~Q~~~l~-~~Tv~enI~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal 755 (1623)
++|+.-|| ..||++||-+|.. .+.++++.++...+|....+.+|. +|||||||||||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 99999999 6899999999842 245678888899999999999995 7999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
+++.+|++||||||+|||.-+......+... ..++.|++||||+++.+. .+|+++++++|+|.++|+.+++....
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998887644332 335899999999999876 48999999999999999999987543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=335.95 Aligned_cols=170 Identities=31% Similarity=0.575 Sum_probs=157.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
++++|++++|+.. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4789999999643 6999999999999999999999999999999999999999999999999998765 667889999
Q ss_pred EcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEE
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397 (1623)
Q Consensus 1319 vpQdp~Lf~g-TIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~IL 1397 (1623)
+||+|.+|.+ |+++|+. ||||||||++|||||+++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999886 9999973 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceE
Q 000351 1398 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1451 (1623)
Q Consensus 1398 lLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1451 (1623)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+.+.+ ||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 46899999999999885 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=337.04 Aligned_cols=172 Identities=32% Similarity=0.515 Sum_probs=159.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCC--hHHhhhce
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 1316 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~--~~~lR~~i 1316 (1623)
|+++|++++|++ +++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998876 56778899
Q ss_pred EEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
+|+||+|.+|.+ |+++|+... ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998742 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCce
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGR 1450 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1450 (1623)
++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998754 5899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=353.10 Aligned_cols=208 Identities=28% Similarity=0.447 Sum_probs=179.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999987 34799
Q ss_pred EEcCCCcccc---ccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1318 IIPQSPVLFS---GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1318 ~vpQdp~Lf~---gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
|+||++.++. .|+++|+......+++++.++++..++.+.+.+ ....||||||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 388998754434456778888888887665543 23579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHHHH
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~~l 1471 (1623)
++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++... ..|..+
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999988653 7899999999999876 999999965 79999999998742 345554
Q ss_pred H
Q 000351 1472 V 1472 (1623)
Q Consensus 1472 ~ 1472 (1623)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=341.57 Aligned_cols=185 Identities=25% Similarity=0.369 Sum_probs=164.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcc--ccCCCcEEEECCEecCCCChHHh-hhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl--~~p~~G~I~IdG~di~~i~~~~l-R~~ 1315 (1623)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999964 3699999999999999999999999999999999999 58999999999999998876654 556
Q ss_pred eEEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
++|+||+|.+|++ |+++|++ . ...+||||||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999876 6665550 0 11369999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhh--ccCEEEEEeCceEeeecChhHHh
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTII--DCDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~-~~TvI~IaHrl~ti~--~~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999998 59999999999999999 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=344.41 Aligned_cols=206 Identities=28% Similarity=0.426 Sum_probs=184.7
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.++++|+++.|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++| .+.+ +..
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhHhCCHHHHhhh
Confidence 37899999999742 35799999999999999999999999999999999999999998 4332 235
Q ss_pred EEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
++|++|++.+++.|++|||.+......++..+.++..++.+.+..+|.|..+..+..+.+||||||||++||||++.+|+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998766666677778888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 822 (1623)
++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999876544 345789999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=341.20 Aligned_cols=221 Identities=30% Similarity=0.419 Sum_probs=194.9
Q ss_pred cEEEEEEEEEeCCCC----------------------CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCc
Q 000351 1238 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~----------------------~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G 1295 (1623)
.|+++||++-|+++. ..-++|+||+|+.||+.-|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 489999999886431 1357899999999999999999999999999999999999999
Q ss_pred EEEECCEecCCCChHHhh----hceEEEcCCCccccc-cHHhhcCCCCC---C----CHHHHHHHHHHhcHHHHHHhccC
Q 000351 1296 RILIDGFDIAKFGLMDLR----KILGIIPQSPVLFSG-TVRFNLDPFSE---H----SDADLWEALERAHLKDAIRRNSL 1363 (1623)
Q Consensus 1296 ~I~IdG~di~~i~~~~lR----~~i~~vpQdp~Lf~g-TIr~NLd~~~~---~----sd~~i~~aL~~~~l~~~i~~lp~ 1363 (1623)
+|++||.||.+++..+|| +++++|+|...||+. ||-+|..+.-+ . ..+...++|+.+||.+|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999998874 469999999999977 99999975422 1 2344778889999988887776
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-c
Q 000351 1364 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-C 1440 (1623)
Q Consensus 1364 gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~ 1440 (1623)
..||||+|||+.|||||..+|+||++|||.|+|||--...+|+-|.+.-+ .+||++|||+|++... -
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 46999999999999999999999999999999999999999999887643 6899999999999876 9
Q ss_pred CEEEEEeCceEeeecChhHHhhcCCChHH
Q 000351 1441 DRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1441 DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~ 1469 (1623)
|||.+|++|+|+..|||+|++.++...|-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 99999999999999999999988765553
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=345.21 Aligned_cols=203 Identities=24% Similarity=0.384 Sum_probs=167.8
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC----ChHHhhhc
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRKI 1315 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i----~~~~lR~~ 1315 (1623)
.+ |++++|++. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.++|.++... +....|++
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 45 899999753 34 99999999 99999999999999999999999999999999999998643 23456889
Q ss_pred eEEEcCCCccccc-cHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
++|+||++.+|.. |+++|+.... ...+++ ....+.++++.+ |++.........||||||||++||||++++
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999864 9999997421 111111 111223344432 455555566678999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998643 7899999999999976 9999999999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=356.24 Aligned_cols=209 Identities=28% Similarity=0.420 Sum_probs=173.6
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 48999999999633 369999999999999999999999999999999999999999999999998752 12234699
Q ss_pred EEcCCCcc---ccccHHhhcCCC--C---------CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHH
Q 000351 1318 IIPQSPVL---FSGTVRFNLDPF--S---------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 1383 (1623)
Q Consensus 1318 ~vpQdp~L---f~gTIr~NLd~~--~---------~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQr 1383 (1623)
|+||+|.+ +..++++|+... . ...++.+.++++..++.+.. ......||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-----------HRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHH
Confidence 99999865 455789887521 0 01123355566666665433 23345799999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1384 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1384 LaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999864 47899999999999866 9999777 89999999999986
Q ss_pred h
Q 000351 1462 S 1462 (1623)
Q Consensus 1462 ~ 1462 (1623)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 3
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=341.28 Aligned_cols=190 Identities=26% Similarity=0.374 Sum_probs=162.3
Q ss_pred cEEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc---CCCcEEEECCEecCCCChHHh
Q 000351 1238 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1312 (1623)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999642 4579999999999999999999999999999999999999 89999999999998764 456
Q ss_pred hhceEEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhh
Q 000351 1313 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1391 (1623)
Q Consensus 1313 R~~i~~vpQdp~Lf~g-TIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL 1391 (1623)
|++++|+||++.+|.+ |+++|+...... . ..+....||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~---------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------------K---------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------------c---------------cccchhhCCHHHHHHHHHHHHHh
Confidence 7889999999988875 999999742110 0 12233579999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEee-cCchhhhc-cCEEEEEeCceEeeec
Q 000351 1392 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1392 ~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~Ia-Hrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
++|+||||||||++||+++.+.+.+.|++..+ ++|+|+++ |+++.+.+ ||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998754 46766655 55677655 9999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=363.81 Aligned_cols=203 Identities=25% Similarity=0.391 Sum_probs=170.3
Q ss_pred EEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------
Q 000351 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 677 (1623)
|+++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|. +.+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~-I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS-VIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHHH
Confidence 78999999996322 247999999999999999999999999999999999999999984 322
Q ss_pred cCcEEEEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 678 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 678 ~~~iay~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
+.+|||++|++.++ +.||+|||.++.. .+. ++..+.++..++.+..+.. ..+|||||||||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHH
Confidence 33699999999998 5899999987532 222 2344556666765544433 358999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
+|||||+.+|+++|||||||+||+.+.+.+.+.+.....+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999866554333 899999999999986 48999999999999999999987
Q ss_pred hc
Q 000351 828 NN 829 (1623)
Q Consensus 828 ~~ 829 (1623)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=345.04 Aligned_cols=227 Identities=26% Similarity=0.446 Sum_probs=186.2
Q ss_pred EEEEEEEEEeCCCC--CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcccc-C----CCcEEEECCEecCCCChHH
Q 000351 1239 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-L----ERGRILIDGFDIAKFGLMD 1311 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~-p----~~G~I~IdG~di~~i~~~~ 1311 (1623)
++++|++..|.... ..+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.++|.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999996432 369999999999999999999999999999999999997 3 5799999999999999876
Q ss_pred hhh----ceEEEcCCCc-cccc--cHHhhcC----CCCCC-C----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCC
Q 000351 1312 LRK----ILGIIPQSPV-LFSG--TVRFNLD----PFSEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375 (1623)
Q Consensus 1312 lR~----~i~~vpQdp~-Lf~g--TIr~NLd----~~~~~-s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~ 1375 (1623)
+|+ .|++|||||. =|+- ||.+.+. ..... + .++..+.|+.+++.+- +..+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 543 6999999995 2222 5554442 11111 1 2356677777776532 1122333457
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEe
Q 000351 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1452 (1623)
Q Consensus 1376 LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1452 (1623)
||||||||+.||-||+.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999876 47999999999999977 9999999999999
Q ss_pred eecChhHHhhcCCChHHHHHH
Q 000351 1453 EYDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1453 e~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
|.|+.+++..++...|.+..-
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999988777765543
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=338.55 Aligned_cols=182 Identities=29% Similarity=0.469 Sum_probs=161.7
Q ss_pred cEEEEEEEEEeCCC----CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccc--cCCCcEEEECCEecCCCChHH
Q 000351 1238 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMD 1311 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~--~p~~G~I~IdG~di~~i~~~~ 1311 (1623)
.|+++||+++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999652 247999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhhceEEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhh
Q 000351 1312 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1312 lR~~i~~vpQdp~Lf~g-TIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
.|++++|+||++.+|.+ |+++|+.... . + . .||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~--~-----------~--------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K--L-----------R--------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H--h-----------c--------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 9999985210 0 0 0 6999999999999999
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCch-hhhc-cCEEEEEeCceEeeec
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1391 L~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~-ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++ .+.. ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4799999999997 5654 9999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=364.48 Aligned_cols=203 Identities=29% Similarity=0.423 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEE
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVA 682 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~ia 682 (1623)
.++++|+++.|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+.+|++| .+.+. +.||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEE
Confidence 4899999999942 35799999999999999999999999999999999999999999 44433 3599
Q ss_pred EEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 683 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
||+|++.+| +.||+|||.|+.. .+. ++..++++..++.+..+..| .+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 6799999998743 222 34566777778876665555 4899999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|+.+|+++|||||||+||+.+.+.+.+.+.....+ |.|+|+|||+.+.+. .||+|++|++|++++.|+++++.++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999998876554333 899999999998765 68999999999999999999987653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=358.06 Aligned_cols=210 Identities=23% Similarity=0.409 Sum_probs=172.0
Q ss_pred CCCCcEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------
Q 000351 610 SGLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------- 677 (1623)
Q Consensus 610 ~~~~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------- 677 (1623)
.+++.|+++|++|.|+... ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.. .+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~~ 95 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKKN 95 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEcccccc
Confidence 3456799999999997421 2479999999999999999999999999999999999999999833 22
Q ss_pred -------------------cCcEEEEccCc--ccCcccHHHHHhcCCC---CCHHH----HHHHHHHhCchhHHhcCCCC
Q 000351 678 -------------------RGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGG 729 (1623)
Q Consensus 678 -------------------~~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g 729 (1623)
+..|+||+|+| ++|+.||+|||.|+.. .+.+. ..+.++.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------- 167 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-------- 167 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh--------
Confidence 23599999998 6888999999998732 22222 233334444321
Q ss_pred CcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchh-hhcCE
Q 000351 730 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL-SQVDR 808 (1623)
Q Consensus 730 ~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l-~~~d~ 808 (1623)
...+..+.+||||||||++|||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|+|||+++++ ..||+
T Consensus 168 --~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 168 --SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred --hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 124556789999999999999999999999999999999999999999986655444689999999999987 46999
Q ss_pred EEEEeCCEEEEecChhHHhhcC
Q 000351 809 IILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 809 i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|++|++|++++.|+++++....
T Consensus 246 i~vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 246 VIVMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999987654
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=335.24 Aligned_cols=172 Identities=29% Similarity=0.473 Sum_probs=156.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh-HHhhhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~-~~lR~~i 1316 (1623)
.|+++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 8999999999999999999999999999999999999999999999999988764 4567889
Q ss_pred EEEcCCC---ccc-cccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1317 GIIPQSP---VLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1317 ~~vpQdp---~Lf-~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
+|+||++ .++ ..|+++|+..... ||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 5699999864210 99999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceE
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 1451 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1451 (1623)
+|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47899999999999987 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=340.20 Aligned_cols=205 Identities=35% Similarity=0.591 Sum_probs=180.1
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
.++++|+++.|+.. ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++| .+.+. ..
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-eEEECCEEhHHCCHHHHHhh
Confidence 37899999999632 35799999999999999999999999999999999999999998 44332 25
Q ss_pred EEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCC
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~ 759 (1623)
++|++|+++++..|++||+.++.. .+.++..+.++.+++.+.++..|.|.+|.+.....+||||||||++||||+..+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999988899999987643 3455667788889999889999999999998889999999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 821 (1623)
+++||||||++||+.+.+.+++.+.. ..+++|+|++||+++++..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999886554 33458999999999998889999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=346.76 Aligned_cols=200 Identities=29% Similarity=0.441 Sum_probs=165.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------c
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------R 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------~ 678 (1623)
++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+ +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccChhhHHHHh
Confidence 468999999963 57999999999999999999999999999999999999999984 322 2
Q ss_pred CcEEEEccCcccCc-ccHHHHHhcCCC----CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 679 GTVAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~-~Tv~enI~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
..|+|++|++.++. .||+||+.++.. .+. ++..++++.+++.+..+ ....+|||||||||
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 145 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRV 145 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 35999999999886 599999987521 222 23444556666544332 23358999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
+||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|+|||+++++. .||+|++|++|++++.|+++++.
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999999886655433 3899999999999876 48999999999999999998876
Q ss_pred hc
Q 000351 828 NN 829 (1623)
Q Consensus 828 ~~ 829 (1623)
..
T Consensus 226 ~~ 227 (235)
T cd03261 226 AS 227 (235)
T ss_pred CC
Confidence 43
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=350.43 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=175.4
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhcc--ccCCCcEEEECCEecCCCChHHhhh-
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDLRK- 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl--~~p~~G~I~IdG~di~~i~~~~lR~- 1314 (1623)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+....++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 39999999999643 699999999999999999999999999999999998 6899999999999999887766554
Q ss_pred ceEEEcCCCccccc-cHHhhcCCCCC----------CC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCC-CCCh
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDPFSE----------HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSV 1378 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~g-TIr~NLd~~~~----------~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~-~LSg 1378 (1623)
.++++||++.+|++ |+++|+..... .. .+.+.++++.+++.+ +..+.... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999999986 88998753210 01 112333444443321 22333333 5999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc--cCEEEEEeCceEeeec
Q 000351 1379 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1379 GQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~G 1455 (1623)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47999999999999875 8999999999999999
Q ss_pred ChhHH
Q 000351 1456 TPEEL 1460 (1623)
Q Consensus 1456 tp~eL 1460 (1623)
+++++
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 99843
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=315.87 Aligned_cols=195 Identities=25% Similarity=0.453 Sum_probs=171.3
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE---------------Ec
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 678 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 678 (1623)
.|+|+||++.|+. ++++|+||||+|++||++-|+||||||||||||+|.|+..|+.|.... .+
T Consensus 1 mI~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 3789999999986 478999999999999999999999999999999999999999994321 34
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.+||+|+|+.-|. +.||.||+.|... .. .++..++++..+|.+....+|. .|||||||||+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 5799999999875 7899999998632 12 2566778999999999999995 79999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhc-CEEEEEeCCEEEEec
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 821 (1623)
||||+..+|++||-||||-.|||..+..|++.+-.....|.||+++|||.+.++.+ -+++.+++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999985544556799999999999999876 799999999998643
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=343.13 Aligned_cols=193 Identities=24% Similarity=0.366 Sum_probs=162.5
Q ss_pred EEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh----HHhhhce
Q 000351 1241 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKIL 1316 (1623)
Q Consensus 1241 ~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~----~~lR~~i 1316 (1623)
++||+++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 369999999999999999999999999999999999999999999999999765542 2457789
Q ss_pred EEEcCCCcccc-ccHHhhcCCCC---CC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1317 GIIPQSPVLFS-GTVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1317 ~~vpQdp~Lf~-gTIr~NLd~~~---~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+|+||++.+|. .|+++|+.... .. .++++.++++..++.+ .......+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL-----------KLKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh-----------hhcCChhhCCHHHHHHHHHHH
Confidence 99999999997 59999996421 11 1233455555555433 333445679999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEEE
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL 1446 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl 1446 (1623)
||+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999865 478999999999987779999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=333.69 Aligned_cols=177 Identities=33% Similarity=0.532 Sum_probs=159.9
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEE
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~v 1319 (1623)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3699999999999999999999999999999999999999999999999999988888888899999
Q ss_pred cCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEE
Q 000351 1320 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1399 (1623)
Q Consensus 1320 pQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlL 1399 (1623)
|| +++.+++.+++. ....+||||||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 566666655443 33467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1400 DEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1400 DEpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998754 7899999999999865 9999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=326.03 Aligned_cols=201 Identities=26% Similarity=0.450 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------- 677 (1623)
..|+++|++..|++ ++.+|+||||+|++||+++|+|++||||||||++|.|..+|++| .+..
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHHHHH
Confidence 46999999999974 57899999999999999999999999999999999999999999 4332
Q ss_pred -cCcEEEEccCcccC-cccHHHHHhcCCC------------CCHHHHHH---HHHHhCchhHHhcCCCCCcccccCCCCc
Q 000351 678 -RGTVAYVPQVSWIF-NATVRDNILFGSA------------FEPARYEK---AIDVTSLQHDLDLLPGGDVTEIGERGVN 740 (1623)
Q Consensus 678 -~~~iay~~Q~~~l~-~~Tv~enI~~g~~------------~~~~~~~~---~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 740 (1623)
+.+|||++|++-|. ..||.+|++.|.- +.++.... +++..++.+..- .+..+
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~ 147 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRAST 147 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhcc
Confidence 33699999999985 7899999998742 23333333 344455544322 34468
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEE
Q 000351 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 818 (1623)
Q Consensus 741 LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 818 (1623)
|||||+|||+|||||+++|+|+|-|||+++|||.+++++++.+.+. ...|.|+|+.-|++++.. +||||+-|++|+|+
T Consensus 148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 9999999999999999999999999999999999999999987764 446899999999999865 69999999999999
Q ss_pred EecChhHHh
Q 000351 819 EEGTFEDLS 827 (1623)
Q Consensus 819 ~~g~~~~l~ 827 (1623)
.+|+.+|+.
T Consensus 228 fDg~~~el~ 236 (258)
T COG3638 228 FDGPASELT 236 (258)
T ss_pred EeCChhhhh
Confidence 999999864
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.68 Aligned_cols=181 Identities=25% Similarity=0.385 Sum_probs=160.0
Q ss_pred cEEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccc--cCCCcEEEECCEecCCCChHHhh
Q 000351 1238 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR 1313 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~--~p~~G~I~IdG~di~~i~~~~lR 1313 (1623)
.|+++|++++|++. .+++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 246999999999999999999999999999999999986 489999999999985 5678
Q ss_pred hceEEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1314 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1314 ~~i~~vpQdp~Lf~g-TIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
++++|+||++.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998631 0000 699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-h-hccCEEEEEeC-ceEeeec
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS-GRVLEYD 1455 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~t-i-~~~DrI~Vl~~-G~ive~G 1455 (1623)
+|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999865 47999999999984 5 45999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=360.31 Aligned_cols=203 Identities=27% Similarity=0.399 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcE
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTV 681 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~i 681 (1623)
+.|+++|+++.|++ +++|+|+||+|++||+++|+|||||||||||++|+|+.+|++| .+.+. ++|
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCE
Confidence 46999999999963 5699999999999999999999999999999999999999999 44432 469
Q ss_pred EEEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 682 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 682 ay~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
|||+|++.+| +.||+|||.|+.. .+. ++.+++++..++.+..+.. ..+|||||||||+|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 9999999998 5799999998743 222 3445566666665444333 3589999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
||+.+|+++|||||||+||+.+.+++.+.+..... .|+|+|+|||+.+++ ..||+|++|++|+|++.|+++++..+.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999886655433 389999999999987 468999999999999999999987653
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=324.46 Aligned_cols=205 Identities=29% Similarity=0.424 Sum_probs=172.2
Q ss_pred CcEEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------
Q 000351 613 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------- 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------- 678 (1623)
..++++|+++.|+... ..++++||||+|.+||.++|+|++|||||||.++|+|..+|++| .+.+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G-~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG-SILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc-eEEECCcccCccccchhh
Confidence 3689999999998521 11599999999999999999999999999999999999999999 44433
Q ss_pred -CcEEEEccCccc---CcccHHHHHhcCC-----CCCHHHHHHHHHHhCchhH-HhcCCCCCcccccCCCCccChHHHHH
Q 000351 679 -GTVAYVPQVSWI---FNATVRDNILFGS-----AFEPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 679 -~~iay~~Q~~~l---~~~Tv~enI~~g~-----~~~~~~~~~~~~~~~l~~~-~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+.|-+|+|+|.- ...||++-|.=+. +-.+++..++++..+|.+. ++..|+ .|||||+||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QR 149 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQR 149 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHH
Confidence 358999999974 3468888875321 1223557788888888765 456664 799999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhh-hcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 826 (1623)
|||||||..+|+++|||||||+||+.+...|++.+... ..+|-|.|+||||+..+.+ ||||+||++|+|+|.++.+++
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence 99999999999999999999999999999999866653 3347899999999999876 899999999999999999998
Q ss_pred hhc
Q 000351 827 SNN 829 (1623)
Q Consensus 827 ~~~ 829 (1623)
...
T Consensus 230 ~~~ 232 (252)
T COG1124 230 LSH 232 (252)
T ss_pred hcC
Confidence 865
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=325.76 Aligned_cols=164 Identities=33% Similarity=0.427 Sum_probs=150.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999873 68999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEE
Q 000351 1319 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 1398 (1623)
Q Consensus 1319 vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILl 1398 (1623)
+||++.++++|+++|+... ....||||||||++||||++++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999989999999642 135799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhccCEEEEEeCce
Q 000351 1399 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 1450 (1623)
Q Consensus 1399 LDEpTS~LD~~Te~~Iq~~L~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1450 (1623)
|||||++||+++.+.+.+.|++. ++|+|+|||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999986 689999999998877799999998753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=346.82 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=173.3
Q ss_pred EEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEE
Q 000351 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 1319 (1623)
Q Consensus 1240 ~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~v 1319 (1623)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++ .+|+|.+||.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56778774 27999999999999999999999999999999999985 599999999999988888888899999
Q ss_pred cCCCcc-ccccHHhhcCCCCCC--C----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1320 PQSPVL-FSGTVRFNLDPFSEH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1320 pQdp~L-f~gTIr~NLd~~~~~--s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
||++.+ +..|+++|+..+... + ++++.++++.. |++.........||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEAL-----------GLDDKLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999854 467999999754211 1 12233444443 44444445567899999999999999997
Q ss_pred -------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1393 -------RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1393 -------~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999875 47899999999998866 99999999999999999988764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=395.37 Aligned_cols=211 Identities=25% Similarity=0.326 Sum_probs=150.9
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHH---------HhhccccCCC----c----EEEEC
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN---------TLFRIVELER----G----RILID 1300 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~---------lL~rl~~p~~----G----~I~Id 1300 (1623)
.++++|++. ..|+|+||+|++||.+||.|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 488888862 3799999999999999999999999999999 5555432211 1 24555
Q ss_pred CEecCCCCh----H------Hhh---------hceE-----EEcCC------------------C---------------
Q 000351 1301 GFDIAKFGL----M------DLR---------KILG-----IIPQS------------------P--------------- 1323 (1623)
Q Consensus 1301 G~di~~i~~----~------~lR---------~~i~-----~vpQd------------------p--------------- 1323 (1623)
-.++..-+. . ++| ++.+ +.+|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 544433211 1 344 1111 12221 0
Q ss_pred -----ccccc-cHHhhcCCCCC------CCHHHHHHHHHHhcHHHHHHhccCCcchh-hhcCCCCCChhHHHHHHHHHhh
Q 000351 1324 -----VLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1324 -----~Lf~g-TIr~NLd~~~~------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~-v~e~G~~LSgGQrQrLaLARAL 1390 (1623)
+.+.+ ||.|||++... .+.+++.+.+ +.++. .|++.. .++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 13333 67777654211 0112222222 12222 367664 6777789999999999999999
Q ss_pred h---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEEEe------CceEeeecChhHH
Q 000351 1391 L---RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLD------SGRVLEYDTPEEL 1460 (1623)
Q Consensus 1391 L---~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~------~G~ive~Gtp~eL 1460 (1623)
+ ++|++|||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|. +|++++.|+|+++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 5999999999999999999999999999865 4789999999999997799999996 7999999999999
Q ss_pred hhc
Q 000351 1461 LSN 1463 (1623)
Q Consensus 1461 l~~ 1463 (1623)
...
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 853
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=342.90 Aligned_cols=205 Identities=25% Similarity=0.368 Sum_probs=167.6
Q ss_pred cccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC----CCcEEEECCEecCCCChHHhhhceEEEcCCCc-cc-c-
Q 000351 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LF-S- 1327 (1623)
Q Consensus 1255 vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p----~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~-Lf-~- 1327 (1623)
+|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++... +..+++++|+||+|. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 34 3
Q ss_pred ccHHhhcCC----CCCC---CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEe
Q 000351 1328 GTVRFNLDP----FSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400 (1623)
Q Consensus 1328 gTIr~NLd~----~~~~---sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLD 1400 (1623)
.|+.+|+.. .... .++++.++++..++.+. ++.......+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488888742 1111 12234555555444310 13445556789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCChHH
Q 000351 1401 EATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1401 EpTS~LD~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~~f~ 1469 (1623)
|||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...+...|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999998753 7899999999999976 999999999999999999999865444333
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=346.84 Aligned_cols=218 Identities=19% Similarity=0.287 Sum_probs=168.8
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccc--cCCCcEEEECCEecCCCChHHhh-hc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR-KI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~--~p~~G~I~IdG~di~~i~~~~lR-~~ 1315 (1623)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...++...+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 36999999999999999999999999999999999995 69999999999999888776654 56
Q ss_pred eEEEcCCCccccc-cHHhhcCCC-CCCCHHHHHHHHHHhcH----HHHHHhccCCcc-hhhhcCC-CCCChhHHHHHHHH
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPF-SEHSDADLWEALERAHL----KDAIRRNSLGLD-AQVSEAG-ENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~-~~~sd~~i~~aL~~~~l----~~~i~~lp~gLd-t~v~e~G-~~LSgGQrQrLaLA 1387 (1623)
++|+||++.++.. |..+++... .........+.++..++ .+.++.+ +++ ....... ..||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc--CCChhhcccCCCCCCCHHHHHHHHHH
Confidence 9999999987764 544443210 00000000000111111 2222221 221 1112222 36999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhc--cCEEEEEeCceEeeecChhHH
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~~-~~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++.
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988654 6899999999999987 899999999999999998854
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=315.63 Aligned_cols=212 Identities=27% Similarity=0.463 Sum_probs=185.4
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+.+|+|++-... .+|+++||+++|||.+||+||||||||||++.|.|.+.|++|++.++|++++++++.++-++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889998887543 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcc-ccccHHhhcC----CCCC---CCHHH--HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1319 IPQSPVL-FSGTVRFNLD----PFSE---HSDAD--LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1319 vpQdp~L-f~gTIr~NLd----~~~~---~sd~~--i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
.||+..+ |+-|++|-+. |++. ..+++ ..+++.++++..+-.+. -..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999975 8889998764 4422 22333 56778888876654432 2469999999999999
Q ss_pred hhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHH
Q 000351 1389 ALLR------RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1389 ALL~------~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eL 1460 (1623)
.|.+ ++++|+||||||+||..-...+.+..|+.. .++.|++|-|+|+.... ||||++|.+|||+..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9986 346999999999999999999999999876 57899999999998766 999999999999999999999
Q ss_pred hhc
Q 000351 1461 LSN 1463 (1623)
Q Consensus 1461 l~~ 1463 (1623)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=348.81 Aligned_cols=205 Identities=27% Similarity=0.403 Sum_probs=172.5
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.++++|++++|++...+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++| .+.+ +..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG-QIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHHhh
Confidence 58999999999743235699999999999999999999999999999999999999998 4332 235
Q ss_pred EEEEccCcc--cCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 681 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 681 iay~~Q~~~--l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
++|++|+|. ++..||+|||.|+.. .++ ++..++++..++.+..+..| .+||||||||++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~l 151 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAI 151 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 899999984 567899999998632 222 34566777778765555443 5899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||+|++|++|++++.|+.+++....
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 9999999999999999999999999999876554433 389999999999998889999999999999999998876553
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=308.62 Aligned_cols=196 Identities=27% Similarity=0.428 Sum_probs=170.5
Q ss_pred EeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCccc
Q 000351 1247 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 1326 (1623)
Q Consensus 1247 ~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf 1326 (1623)
.|.....++|+|+||++.+||.++|.||||||||||++.+.-+..|++|+++..|.|+++++++.+|++++||-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 45444558999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcC-CCC---C-CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeC
Q 000351 1327 SGTVRFNLD-PFS---E-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401 (1623)
Q Consensus 1327 ~gTIr~NLd-~~~---~-~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDE 1401 (1623)
.+||.+||- |+. . .+...-.+-|+++++. ++.+..+..+||||||||++|+|-|.--|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 999999996 442 1 2223333344444433 345556677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchh-hhccCEEEEEeCceEe
Q 000351 1402 ATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-IIDCDRILLLDSGRVL 1452 (1623)
Q Consensus 1402 pTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~t-i~~~DrI~Vl~~G~iv 1452 (1623)
+||+||+.+.+.|.+.|.+++ ++..++.|||+-+. +..+|+++-+..|++-
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999999988 46899999999998 6779999999998763
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=362.38 Aligned_cols=227 Identities=27% Similarity=0.465 Sum_probs=190.6
Q ss_pred cEEEEEEEEEeCCCCC--CcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCC----CcEEEECCEecCCCChHH
Q 000351 1238 SIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE----RGRILIDGFDIAKFGLMD 1311 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~----~G~I~IdG~di~~i~~~~ 1311 (1623)
-++++|++..|..... ++++||||+|.+||.+||||.|||||||+.++|.|++++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999964432 5999999999999999999999999999999999999987 899999999999998876
Q ss_pred hh----hceEEEcCCCc-cccc--cHHhhcC----CCCCC----CHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCC
Q 000351 1312 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376 (1623)
Q Consensus 1312 lR----~~i~~vpQdp~-Lf~g--TIr~NLd----~~~~~----sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~L 1376 (1623)
.| ++|++|||||. .++- ||.+.+. ..... ..++..+.|+.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 64 36999999996 5543 7766553 11111 23446666777766443222 2234689
Q ss_pred ChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1377 SgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
|||||||+.||+||..+|++||+||||.+||+.|.+.|.+.|++.. .|.++|+|||++..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 57899999999999988 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHH
Q 000351 1454 YDTPEELLSNEGSSFSKMVQ 1473 (1623)
Q Consensus 1454 ~Gtp~eLl~~~~~~f~~l~~ 1473 (1623)
.|+++++++++...|.+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999988777766553
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=359.01 Aligned_cols=204 Identities=29% Similarity=0.427 Sum_probs=173.9
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------Cc
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GT 680 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~ 680 (1623)
.+.++++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+.+|++| .+.+. ..
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RIMLDGQDITHVPAENRH 87 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCC
Confidence 346999999999963 5699999999999999999999999999999999999999998 44332 35
Q ss_pred EEEEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 681 VAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 iay~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
|||++|++.+| ..||+|||.|+.. .+. ++..++++..++.+.++..| .+|||||||||+||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999998 5699999998743 122 34556677777776666555 48999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|||+.+|+++|||||||+||+.+.+.+.+.+..... .|.|+|+||||.+++. .||+|++|++|+|++.|+++++..+.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999886655433 3899999999999864 69999999999999999999987653
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=350.11 Aligned_cols=206 Identities=28% Similarity=0.464 Sum_probs=169.1
Q ss_pred cEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------
Q 000351 614 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------- 677 (1623)
.++++|+++.|+... ++++|+||||+|++||+++|+||||||||||+++|+|.++|++|. +.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGK-IIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccE-EEECCEECCCcCccHHH
Confidence 378999999997422 247999999999999999999999999999999999999999983 322
Q ss_pred -cCcEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 678 -RGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 678 -~~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
+..|||++|+| .+++.||+|||.|+.. .+. ++..++++.+++.. .+........|||||||
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKR 151 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHH
Confidence 23599999998 5678999999998631 232 23455666666641 01123445689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 825 (1623)
|++|||||+.+|+++||||||++||+.+.+++++.+..... .|+|+|++||+++++. .||+|++|++|+++++|+.++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999886554333 3899999999999875 699999999999999999998
Q ss_pred Hhhc
Q 000351 826 LSNN 829 (1623)
Q Consensus 826 l~~~ 829 (1623)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=332.94 Aligned_cols=194 Identities=24% Similarity=0.343 Sum_probs=167.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4789999999643 6999999999999999999999999999999999999999999999999987643 567889999
Q ss_pred EcCCCccc-cccHHhhcCCCC-CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcE
Q 000351 1319 IPQSPVLF-SGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1319 vpQdp~Lf-~gTIr~NLd~~~-~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~I 1396 (1623)
+||++.++ ..|+++|+..+. ...++++.++++..++.++..+ ...+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 469999997543 2356677777888777644322 2357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEE
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 1446 (1623)
Q Consensus 1397 LlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl 1446 (1623)
|||||||++||+.+.+.+.+.|++.. +++|+|+|||+...+.. ||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47999999998877655 9999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=358.26 Aligned_cols=203 Identities=29% Similarity=0.418 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcE
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTV 681 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~i 681 (1623)
..++++|++++|++ +.+|+|+||++++|++++|+|||||||||||++|+|+.+|++| .+.+. +.|
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~r~i 78 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG-TIYQGGRDITRLPPQKRDY 78 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCE
Confidence 35899999999963 5699999999999999999999999999999999999999998 44432 359
Q ss_pred EEEccCcccC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 682 AYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 682 ay~~Q~~~l~-~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
|||+|++.+| ..||+|||.|+.. .+ .++.+++++..+|.+..+. ...+|||||||||+|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-----------YPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-----------ChhhCCHHHHHHHHHHH
Confidence 9999999998 5799999998732 22 2345566666666554443 34589999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
||+.+|+++|||||||+||+.+.+++.+.+.....+ |.|+|+|||+.+++. .||+|++|++|++++.|+++++.++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999998876654333 899999999999865 58999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=376.41 Aligned_cols=212 Identities=25% Similarity=0.393 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhh-hce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR-~~i 1316 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+....+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999887776655 469
Q ss_pred EEEcCCCccccc-cHHhhcCCCCCCC---HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~~~s---d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
+|+||++.+|.. |+++|+....... ++++.++++..++ +........+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC-----------QLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC-----------CccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998876 9999997532211 2334444544443 333344456799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999999864 47899999999999876 99999999999999999998764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=343.45 Aligned_cols=195 Identities=27% Similarity=0.406 Sum_probs=158.4
Q ss_pred CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEc-CCCccc-cccH
Q 000351 1253 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP-QSPVLF-SGTV 1330 (1623)
Q Consensus 1253 ~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vp-Qdp~Lf-~gTI 1330 (1623)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ....|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999987653 346778899997 667776 4599
Q ss_pred HhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCC
Q 000351 1331 RFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407 (1623)
Q Consensus 1331 r~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD 1407 (1623)
++|+.... ..+.++..+.+ .+.++. .|++.........||||||||++|||||+.+|+||||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL-----DELSEL--LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-----HHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99985321 22233222211 122222 134333333446799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CcEEEEeecCchhhhc-cCEEEEEeCceEeeec
Q 000351 1408 VRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1455 (1623)
Q Consensus 1408 ~~Te~~Iq~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1455 (1623)
+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998743 6899999999999876 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.67 Aligned_cols=200 Identities=31% Similarity=0.465 Sum_probs=165.7
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEE
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVA 682 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~ia 682 (1623)
.++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++| .+.+. ..++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG-TILFGGEDATDVPVQERNVG 77 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCccccceE
Confidence 3789999999963 5799999999999999999999999999999999999999998 43332 3599
Q ss_pred EEccCcccC-cccHHHHHhcCCCC-------CH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 683 YVPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 683 y~~Q~~~l~-~~Tv~enI~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
|++|+|.++ +.||+||+.++... +. ++..+.++..++.+..+ ....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHH
Confidence 999999887 57999999876321 21 22344455555543333 334689999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
||||++.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999998865543333 899999999999875 589999999999999999988754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=349.49 Aligned_cols=204 Identities=25% Similarity=0.438 Sum_probs=168.8
Q ss_pred EEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------
Q 000351 615 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------- 677 (1623)
|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|. +.+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEECccccccccHH
Confidence 78999999997421 136999999999999999999999999999999999999999983 322
Q ss_pred --cCcEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 678 --RGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 678 --~~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
+..|+|++|+| .+++.||.|||.|+.. .+. +++.++++..++.+++ ......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 23589999998 6888899999998732 222 2455556666664322 1234468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 825 (1623)
||++|||||+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++. .||+|++|++|+++++|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999998865443345899999999999885 599999999999999999999
Q ss_pred Hhhc
Q 000351 826 LSNN 829 (1623)
Q Consensus 826 l~~~ 829 (1623)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=320.88 Aligned_cols=159 Identities=30% Similarity=0.538 Sum_probs=148.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH-HhhhceE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILG 1317 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~-~lR~~i~ 1317 (1623)
|+++|++++|++. ++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999643 699999999999999999999999999999999999999999999999999887764 4677899
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEE
Q 000351 1318 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397 (1623)
Q Consensus 1318 ~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~IL 1397 (1623)
|+|| ||||||||++||||++++|+||
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1398 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1398 lLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
+|||||++||+++.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999874 47899999999998876 99999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=359.01 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=160.8
Q ss_pred CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-----------------cCcEEEEccCcccC
Q 000351 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------------RGTVAYVPQVSWIF 691 (1623)
Q Consensus 629 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-----------------~~~iay~~Q~~~l~ 691 (1623)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+ +..|+||+|++++|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G-~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG-QIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35799999999999999999999999999999999999999998 3332 34699999999998
Q ss_pred c-ccHHHHHhcCCCC---CH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q 000351 692 N-ATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 763 (1623)
Q Consensus 692 ~-~Tv~enI~~g~~~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ill 763 (1623)
+ .||+|||.|+..+ +. ++..+.++..+|....+. ...+|||||||||+|||||+.+|+|+|
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-----------~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-----------YPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5 6999999986432 22 334455566666544443 445899999999999999999999999
Q ss_pred EeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 764 FDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 764 LDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
||||||+||+.+++++.+.+..... .|+|+|+|||+++++ ..||+|++|++|++++.|+++++..+.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 9999999999999999998776543 489999999999986 458999999999999999999987653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=349.94 Aligned_cols=206 Identities=29% Similarity=0.461 Sum_probs=168.9
Q ss_pred cEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE---------------
Q 000351 614 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 676 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 676 (1623)
.|+++|++++|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999997421 136999999999999999999999999999999999999999984321
Q ss_pred ---------------------EcCcEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcC
Q 000351 677 ---------------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLL 726 (1623)
Q Consensus 677 ---------------------~~~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l 726 (1623)
.+..||||+|+| .++..||+|||.|+.. .++ ++..++++.++|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--- 158 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY--- 158 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh---
Confidence 023489999986 5678899999998731 222 3345566666664221
Q ss_pred CCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-h
Q 000351 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-Q 805 (1623)
Q Consensus 727 ~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~ 805 (1623)
......+||||||||++|||||+.+|+++||||||++||+...+.+.+.+......|+|+|+|||+++++. .
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 12344689999999999999999999999999999999999999998866544445899999999999864 6
Q ss_pred cCEEEEEeCCEEEEecChhHHhhc
Q 000351 806 VDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 806 ~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||+|++|++|++++.|+.+++...
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=377.87 Aligned_cols=215 Identities=22% Similarity=0.365 Sum_probs=179.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC--CCcEEEECCEecCCCChHH-hhh
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p--~~G~I~IdG~di~~i~~~~-lR~ 1314 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ceEEEcCCCccccc-cHHhhcCCCCC------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHH
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387 (1623)
Q Consensus 1315 ~i~~vpQdp~Lf~g-TIr~NLd~~~~------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLA 1387 (1623)
+++||||+|.+|.. |+++|+..... .+.++..+ .+.++++.+ |++........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988875 99999974321 12111111 122333332 343333444567999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1388 RALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
|||+.+|+|||||||||+||+.+...+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999998864 47899999999999976 9999999999999999998864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.78 Aligned_cols=199 Identities=23% Similarity=0.390 Sum_probs=163.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------cCc
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------RGT 680 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~~~ 680 (1623)
++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+ +..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS-VLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce-EEECCEECCCCCHHHHHhcC
Confidence 468999999963 56999999999999999999999999999999999999999983 322 134
Q ss_pred EEEEccCcccCc-ccHHHHHhcCCCC-------------CH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccC
Q 000351 681 VAYVPQVSWIFN-ATVRDNILFGSAF-------------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742 (1623)
Q Consensus 681 iay~~Q~~~l~~-~Tv~enI~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 742 (1623)
++|++|++.++. .||+|||.++... +. ++..+.++..++.+ ..+....+||
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 145 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELS 145 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCC
Confidence 999999999875 5999999875321 01 12233334444322 2344557899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000351 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 821 (1623)
Q Consensus 743 GGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 821 (1623)
||||||++||||++.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999998665543368999999999999865 8999999999999999
Q ss_pred ChhHHhh
Q 000351 822 TFEDLSN 828 (1623)
Q Consensus 822 ~~~~l~~ 828 (1623)
+++++..
T Consensus 226 ~~~~~~~ 232 (236)
T cd03219 226 TPDEVRN 232 (236)
T ss_pred CHHHhcc
Confidence 9888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=346.31 Aligned_cols=199 Identities=29% Similarity=0.449 Sum_probs=169.5
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.++++|+++.|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++| .+.+ ++.
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG-RVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHHHHhh
Confidence 5899999999963 35699999999999999999999999999999999999999998 4332 235
Q ss_pred EEEEccCc--ccCcccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 681 VAYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 681 iay~~Q~~--~l~~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
|+|++|+| .++..||+||+.|+.. .+ .+++.++++.+++.+..+..| ..||||||||++|
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~l 149 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAI 149 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHH
Confidence 99999998 5678899999998632 22 234566777778866555544 4799999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 826 (1623)
||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999998866554445899999999999985 6999999999999999998754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=338.79 Aligned_cols=197 Identities=27% Similarity=0.413 Sum_probs=163.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCc-----cCCCCCeEEE------------
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAVI------------ 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~-----~~~~g~~~~~------------ 677 (1623)
|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|.+ +|++|. +.+
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE-VLLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeE-EEECCEEhhhcchHH
Confidence 478999999963 57999999999999999999999999999999999999 898883 322
Q ss_pred ---cCcEEEEccCcccCcccHHHHHhcCCC---C-C----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 678 ---RGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 678 ---~~~iay~~Q~~~l~~~Tv~enI~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
+..++|++|++.+++.||+||+.++.. . . +++..++++..++.+.+...++ +.+||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~ 147 (227)
T cd03260 77 LELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQ 147 (227)
T ss_pred HHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHH
Confidence 235999999999888899999987532 1 1 2344556666666554433221 468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 825 (1623)
||++||||++.+|+++||||||++||+.+.+.+++.+.....+ +|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999998866554334 89999999999876 589999999999999988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=348.49 Aligned_cols=205 Identities=30% Similarity=0.493 Sum_probs=169.6
Q ss_pred EEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------
Q 000351 615 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------- 678 (1623)
++++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++| .+.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHH
Confidence 78999999996422 24699999999999999999999999999999999999999998 33221
Q ss_pred ---CcEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 679 ---GTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 679 ---~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
..|+||+|+| .+++.||+|||.|+.. .+. ++..++++.++|.+++. .....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 2599999998 5788899999988631 222 34556667777753321 223468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
|||+|||||+.+|+++||||||++||+.+.+.+.+.+..... .|.|||++||+++.+. .||+|++|++|+++++|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999886654433 3899999999999875 58999999999999999999
Q ss_pred HHhhcC
Q 000351 825 DLSNNG 830 (1623)
Q Consensus 825 ~l~~~~ 830 (1623)
++.+..
T Consensus 232 ~~~~~~ 237 (290)
T PRK13634 232 EIFADP 237 (290)
T ss_pred HHhcCH
Confidence 886543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=333.91 Aligned_cols=199 Identities=48% Similarity=0.793 Sum_probs=175.4
Q ss_pred EEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE----------------EcC
Q 000351 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 679 (1623)
Q Consensus 616 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 679 (1623)
.+.|++|.|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 57899999974 357999999999999999999999999999999999999999883221 123
Q ss_pred cEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCC
Q 000351 680 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 680 ~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~ 759 (1623)
.++|++|+|.+++.|++||+.++.+.+.++..++++.+++.+.++.+|.|+++.++....+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 59999999999999999999987666666677888999999889989999999999999999999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHH-HHhhh-cCCcEEEEEcCCcchhhhcCEEEEEeCCE
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDR-CIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGM 816 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 816 (1623)
+++||||||++||+.+.+.+.+. ++... ..|+|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988873 44433 34799999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=335.57 Aligned_cols=192 Identities=29% Similarity=0.436 Sum_probs=159.6
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVAY 683 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~iay 683 (1623)
++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++| .+.+. ..++|
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG-EILIDGRDVTGVPPERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcCcCchhhccEEE
Confidence 468999999963 5799999999999999999999999999999999999999998 43332 35999
Q ss_pred EccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHH
Q 000351 684 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 684 ~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal 755 (1623)
++|++.++ +.|++||+.++.. .+. ++..+.++.+++.+..+.. ..+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999987532 122 2345566666665544433 358999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 821 (1623)
+.+|+++||||||++||+.+.+++++.+..... .|+|+|++||+++++. .||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999986654433 4899999999999875 58999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=378.47 Aligned_cols=212 Identities=23% Similarity=0.343 Sum_probs=179.3
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i 1316 (1623)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 38999999999643 69999999999999999999999999999999999999999999999999988776554 4579
Q ss_pred EEEcCCCccccc-cHHhhcCCCC-------CC---CH----HHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHH
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFS-------EH---SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 1381 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~-------~~---sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQr 1381 (1623)
+||||++.+|.. |+++|+.... .. +. +++.++++.. |++........+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRV-----------GLKVDLDEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHc-----------CCCCCcccchhhCCHHHH
Confidence 999999998875 9999996321 10 11 1223333333 343333444467999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhH
Q 000351 1382 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459 (1623)
Q Consensus 1382 QrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~e 1459 (1623)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999999864 47899999999999987 99999999999999999988
Q ss_pred Hhh
Q 000351 1460 LLS 1462 (1623)
Q Consensus 1460 Ll~ 1462 (1623)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 753
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=341.73 Aligned_cols=190 Identities=25% Similarity=0.399 Sum_probs=161.0
Q ss_pred ccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEEEcCCCcccc-ccHHhhc
Q 000351 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNL 1334 (1623)
Q Consensus 1256 L~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~Lf~-gTIr~NL 1334 (1623)
|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. +.+|+||++.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCCHHH----HHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 000351 1335 DPF-----SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405 (1623)
Q Consensus 1335 d~~-----~~~sd~~----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~ 1405 (1623)
... ...++++ +.+.++..++ +.........||||||||++|||||+++|+||||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGL-----------TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCC-----------HHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 1222222 3444444444 3334444567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1406 VDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1406 LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 37899999999999876 9999999999999999887663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=354.84 Aligned_cols=202 Identities=31% Similarity=0.447 Sum_probs=169.9
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEE
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVA 682 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~ia 682 (1623)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+. ..|+
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSRLHARDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHCCEE
Confidence 3789999999963 5799999999999999999999999999999999999999998 44332 3599
Q ss_pred EEccCcccC-cccHHHHHhcCCC-------CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 683 YVPQVSWIF-NATVRDNILFGSA-------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 683 y~~Q~~~l~-~~Tv~enI~~g~~-------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
||+|++.+| ..||+|||.|+.. .+. ++..+.++..++.+..+.. ..+|||||||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 999999998 4799999998732 121 2444556666665444433 3589999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
|||||+.+|+++|||||||+||+.+.+.+.+.+.....+ |+|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999998866554333 899999999999865 589999999999999999999876
Q ss_pred cC
Q 000351 829 NG 830 (1623)
Q Consensus 829 ~~ 830 (1623)
+.
T Consensus 227 ~p 228 (353)
T PRK10851 227 EP 228 (353)
T ss_pred Cc
Confidence 53
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=356.36 Aligned_cols=203 Identities=27% Similarity=0.410 Sum_probs=172.9
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCC--CCeEEEc-----------C
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASAVIR-----------G 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~--g~~~~~~-----------~ 679 (1623)
..++++|++++|++ +.+|+|+||+|++|++++|+|||||||||||++|+|+.+|++ | .+.+. .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G-~i~~~g~~~~~~~~~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG-RIAIADRDLTHAPPHKR 79 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE-EEEECCEECCCCCHHHC
Confidence 35899999999963 569999999999999999999999999999999999999999 8 44332 3
Q ss_pred cEEEEccCcccC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 680 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 680 ~iay~~Q~~~l~-~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
.|+||+|++.+| ..||+|||.|+.. .+ .++..++++..+|.+..+..| .+|||||||||+|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHH
Confidence 599999999998 5699999998632 22 134556677777766555544 4899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
||||..+|+++|||||||+||+...+++.+.+.....+ |+|+|+|||+.+++. .||+|++|++|++++.|+++++..
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999998876654433 789999999999865 589999999999999999999976
Q ss_pred cC
Q 000351 829 NG 830 (1623)
Q Consensus 829 ~~ 830 (1623)
+.
T Consensus 229 ~p 230 (362)
T TIGR03258 229 AP 230 (362)
T ss_pred Cc
Confidence 53
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=358.30 Aligned_cols=201 Identities=30% Similarity=0.420 Sum_probs=170.7
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEE
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVA 682 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~ia 682 (1623)
.++++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++| .+.+. ..|+
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG-DLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHhHCCEE
Confidence 4899999999963 5699999999999999999999999999999999999999998 44332 3599
Q ss_pred EEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 683 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
|++|++.+| +.||+|||.|+.. .+. ++..++++.+++.+..+..+ .+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999988 5699999998632 222 34566677777765444433 5899999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
|+.+|+++|||||||+||+.+.+.+.+.+.....+ |+|+|+|||+++++. .||+|++|++|++++.|+++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998866554333 899999999999875 5899999999999999999998754
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=332.28 Aligned_cols=189 Identities=30% Similarity=0.482 Sum_probs=159.5
Q ss_pred EEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc----------CcEEEEc
Q 000351 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR----------GTVAYVP 685 (1623)
Q Consensus 616 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~----------~~iay~~ 685 (1623)
+++|+++.|++ .+++|+|+||++++|++++|+||||||||||+++|+|.++|++| .+.+. ..|+|++
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG-SILLNGKPIKAKERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEhhhHHhhcceEEEe
Confidence 36789999963 15799999999999999999999999999999999999999999 44332 3599999
Q ss_pred cCc--ccCcccHHHHHhcCCC---CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 686 QVS--WIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 686 Q~~--~l~~~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
|+| .+++.|++||+.++.. .+.++..++++.+++.+..+..+ .+||||||||++||||++.+|+
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCC
Confidence 998 4568899999987632 12346677788888865554443 4799999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEE
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 818 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 818 (1623)
++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||+|++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999998866544446899999999999986 58999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=332.23 Aligned_cols=194 Identities=25% Similarity=0.337 Sum_probs=166.4
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 36999999999999999999999999999999999999999999999999997654 456788999
Q ss_pred EcCCCcccc-ccHHhhcCCCC----CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcC
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~----~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~ 1393 (1623)
+||++.+++ .|+++|+.... ...++++.++++..++.++.. .....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999996432 123456677777777655432 23457999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEE
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 1446 (1623)
Q Consensus 1394 p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl 1446 (1623)
|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 47899999999999976 4677665
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=375.40 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=177.7
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHh-hhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i 1316 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999976655443 5679
Q ss_pred EEEcCCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHH
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 1388 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~~-------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLAR 1388 (1623)
+|+||++.+|.. |+++|+.+... .+..+..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999974211 11211111 122233332 3333333444579999999999999
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1389 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1389 ALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998864 46899999999999976 9999999999999999988764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=349.50 Aligned_cols=202 Identities=26% Similarity=0.410 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------cCc
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGT 680 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------~~~ 680 (1623)
..++++|+++.|++ +.+|+||||+|++|++++|+||||||||||+++|+|+++|++| .+.+ +.+
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G-~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG-SISLCGEPVPSRARHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEecccchHHHHhc
Confidence 46999999999963 5799999999999999999999999999999999999999999 4433 236
Q ss_pred EEEEccCcccC-cccHHHHHhcC-CC--CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 681 VAYVPQVSWIF-NATVRDNILFG-SA--FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 iay~~Q~~~l~-~~Tv~enI~~g-~~--~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
||||||++.++ +.|++||+.+. .. .+. ++..++++.+++.+..+. ...+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA-----------KVGELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------chhhCCHHHHHHHHHH
Confidence 99999999987 57999999852 21 122 233445555555433222 2357999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
|||+++|++++|||||+|||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998655444458999999999999865 899999999999999999998644
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=346.86 Aligned_cols=205 Identities=24% Similarity=0.439 Sum_probs=167.3
Q ss_pred cEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------
Q 000351 614 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------- 677 (1623)
.++++|++++|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|. +.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~-i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT-VTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchH
Confidence 378999999996322 247999999999999999999999999999999999999999983 322
Q ss_pred ---cCcEEEEccCc--ccCcccHHHHHhcCCC---CCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHH
Q 000351 678 ---RGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 678 ---~~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
+..||||+|+| .+++.||+|||.|+.. .+.+ +..+.++.+++..+. ....+.+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQ 150 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHH
Confidence 23589999997 5788899999998631 2322 233444555553211 223456899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 746 kqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
|||++|||||+.+|+++||||||++||+.+.+++.+.+..... .|+|+|+|||+++++. .||+|++|++|+++++|++
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999886554333 4899999999999875 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++.+.
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 988654
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=335.87 Aligned_cols=190 Identities=25% Similarity=0.430 Sum_probs=158.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc----------------
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---------------- 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~---------------- 678 (1623)
++++|++++|++. .+++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGK-IRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEehhhcChhHHHHHH
Confidence 7899999999632 246999999999999999999999999999999999999999983 3322
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
..++|++|++.++ +.|++||+.++.. .+ +++..++++.+++.+..+..+ .+||||||||++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 148 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVA 148 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHH
Confidence 3589999999887 4799999987521 11 234566677777765444433 479999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEE
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 817 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i 817 (1623)
||||++.+|+++||||||++||+.+.+++.+.+.....+|+|+|+|||+++++. .||+|++|++|+|
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999866544345899999999999987 4899999999974
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=335.73 Aligned_cols=197 Identities=24% Similarity=0.369 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc------------CcEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------GTVA 682 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------~~ia 682 (1623)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|.++|++| .+.+. ..++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecCcChHHHhhcEE
Confidence 478999999963 5799999999999999999999999999999999999999998 44332 3599
Q ss_pred EEccCcccCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 683 YVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l~~-~Tv~enI~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
|++|++.++. .|++||+.++. ..+ +++..+.++..++.+..+.. ..+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999998874 69999997642 122 23455667777776544433 35799999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 826 (1623)
++.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998866554444 8999999999999864 899999999999999887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=343.47 Aligned_cols=205 Identities=30% Similarity=0.450 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------C
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------G 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~ 679 (1623)
+.++++|+++.|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|.++|++| .+.+. .
T Consensus 4 ~~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G-~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG-TITVGGMVLSEETVWDVRR 81 (279)
T ss_pred ceEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHhh
Confidence 46999999999963 235799999999999999999999999999999999999999998 43322 3
Q ss_pred cEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.|+|++|+| .+++.||+|||.++.. .++ ++..++++.++|.+.++..+ .+||||||||++
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~ 150 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVA 150 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHH
Confidence 599999998 4568899999987521 222 34566777778876666554 489999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999866544333 8999999999999888999999999999999999888654
Q ss_pred C
Q 000351 830 G 830 (1623)
Q Consensus 830 ~ 830 (1623)
.
T Consensus 231 ~ 231 (279)
T PRK13635 231 G 231 (279)
T ss_pred H
Confidence 3
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=354.39 Aligned_cols=203 Identities=28% Similarity=0.429 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------
Q 000351 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 677 (1623)
|+++|++++|+... ++++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR-VLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCcCCHHHHHHH
Confidence 78999999997321 357999999999999999999999999999999999999999983 332
Q ss_pred cCcEEEEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 678 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 678 ~~~iay~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
+..|+|++|++.++ +.|++||+.++.. .+. ++..+.++..++.+..+. ...+|||||||||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 23699999999987 4799999987521 222 234445555565443332 3458999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
+|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999986655433 38999999999999765 8999999999999999999987
Q ss_pred hc
Q 000351 828 NN 829 (1623)
Q Consensus 828 ~~ 829 (1623)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=374.41 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=181.0
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+++++
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8999999999643 59999999999999999999999999999999999999999999999998877777778888999
Q ss_pred EcCCCcc--c-------cccHHhhcCCCCCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1319 IPQSPVL--F-------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1319 vpQdp~L--f-------~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
+||++.+ + ..|+++|+... ...++++.++++..++.+.. ......||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHHHHHH
Confidence 9999753 2 34888888642 11234466666666554433 33345799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhh
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~ 1462 (1623)
|+.+|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999864 36899999999999987 99999999999999999998875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=378.36 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=89.0
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHhhhc---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhh
Q 000351 1364 GLDA-QVSEAGENFSVGQRQLLSLSRALLR---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 1438 (1623)
Q Consensus 1364 gLdt-~v~e~G~~LSgGQrQrLaLARALL~---~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~ 1438 (1623)
||+. .+++...+|||||+||++|||+|++ +|+++||||||++||+.+.+.+++.|++.. ++.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6654 4677788999999999999999997 589999999999999999999999999875 4789999999999998
Q ss_pred ccCEEEEE------eCceEeeecChhHH
Q 000351 1439 DCDRILLL------DSGRVLEYDTPEEL 1460 (1623)
Q Consensus 1439 ~~DrI~Vl------~~G~ive~Gtp~eL 1460 (1623)
.||+|++| ++|+|++.|+|+++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=334.77 Aligned_cols=197 Identities=29% Similarity=0.444 Sum_probs=162.9
Q ss_pred EEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------cCcEEEEc
Q 000351 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVP 685 (1623)
Q Consensus 615 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------~~~iay~~ 685 (1623)
++++|+++.|+... .+++|+|+||+|++|++++|+||||||||||+++|+|..+|++| .+.+ +..++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccccCcEEEEe
Confidence 46899999996311 15799999999999999999999999999999999999999998 4443 24699999
Q ss_pred cCcccCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhc
Q 000351 686 QVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757 (1623)
Q Consensus 686 Q~~~l~~-~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~ 757 (1623)
|++.++. .|++||+.++.. .+ .++..+.++..++.+.++..+ .+||||||||++||||+++
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9998875 799999986521 11 234556667777765444433 5799999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEe--CCEEEEecCh
Q 000351 758 NSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVH--EGMVKEEGTF 823 (1623)
Q Consensus 758 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 823 (1623)
+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++. .||++++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999986654433 4899999999999875 589999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=333.36 Aligned_cols=204 Identities=26% Similarity=0.445 Sum_probs=173.0
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------- 678 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------- 678 (1623)
.+.++++|++++|+...++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++| .+.+.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG-QVLLDGKPISQYEHKYLH 87 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEECCCchHHcCHHHHH
Confidence 4579999999999743235799999999999999999999999999999999999999999 44332
Q ss_pred CcEEEEccCcccCcccHHHHHhcCCC-CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhc
Q 000351 679 GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~ 757 (1623)
..++|++|++.+++.||+||+.++.. .....+.+..+...+.+.++.++.|..+.++....+|||||||||+||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 35999999999998999999987643 22233333444456677788888777777888899999999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEE
Q 000351 758 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 817 (1623)
Q Consensus 758 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 817 (1623)
+|+++||||||++||+++.+.+.+.+.. ..+++|+|++||+++++..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999876554 4457899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=335.13 Aligned_cols=202 Identities=26% Similarity=0.401 Sum_probs=169.4
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++| .+.+ +..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcChHHhhhc
Confidence 4889999999963 5799999999999999999999999999999999999999998 3332 235
Q ss_pred EEEEccCcccCcccHHHHHhcCCCC---CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhc
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757 (1623)
Q Consensus 681 iay~~Q~~~l~~~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~ 757 (1623)
++|++|++.++..|++||+.++... ..++..+.++.+++..++ ......+||||||||++||||++.
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999989999999876322 233455566666664222 123456899999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000351 758 NSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 758 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++. .||+|++|++|++++.|+.+++...
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999876654333 3899999999999976 5899999999999999999988754
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=327.47 Aligned_cols=189 Identities=25% Similarity=0.419 Sum_probs=161.0
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cC
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 679 (1623)
..++++|++++|+.. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|. +.+ +.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEhHHCCHHHHHh
Confidence 469999999999742 247999999999999999999999999999999999999999994 333 24
Q ss_pred cEEEEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCC
Q 000351 680 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 680 ~iay~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~ 759 (1623)
.|+||+|+|.++++|++||+.+...+++++..+.++ ++.+..+||||||||++||||++.+|
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 699999999999999999998654444333322222 24566789999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 822 (1623)
+++||||||++||+.+.+.+.+.+.. ..+|+|+|++||+.+.+..||++++|++|++++.|+
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999876554 346899999999999988899999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=335.90 Aligned_cols=198 Identities=24% Similarity=0.401 Sum_probs=163.1
Q ss_pred CcEEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------
Q 000351 613 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------- 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------- 678 (1623)
+.++++|+++.|+... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD-VIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCCHHHHH
Confidence 3589999999997422 257999999999999999999999999999999999999999983 3221
Q ss_pred ----CcEEEEccCcccCc-ccHHHHHhcCC---CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 679 ----GTVAYVPQVSWIFN-ATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 679 ----~~iay~~Q~~~l~~-~Tv~enI~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
..|+|++|++.++. .|++||+.++. ..+. ++..++++.+++.+..+ ....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~ 151 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGER 151 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHH
Confidence 35999999998875 59999998632 1222 23455666666643332 33468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 822 (1623)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++..+|++++|++|++++.|+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999876654333 4899999999999998889999999999998775
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=329.92 Aligned_cols=192 Identities=23% Similarity=0.382 Sum_probs=162.7
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVAY 683 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~iay 683 (1623)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|..+|++| .+.+. ..++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHhhEEE
Confidence 47899999995 35799999999999999999999999999999999999999998 44332 35999
Q ss_pred EccCcccC-cccHHHHHhcCC---CCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCC
Q 000351 684 VPQVSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 684 ~~Q~~~l~-~~Tv~enI~~g~---~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~ 759 (1623)
++|++.++ +.|++||+.++. ..++++..+.++..++.+..+. ...+|||||||||+||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 689999997652 2245566677777777654433 34589999999999999999999
Q ss_pred CEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 821 (1623)
+++||||||++||+.+.+.+++.+.....+|+|+|++||+++++. .||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999998866544346899999999999986 58999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=337.95 Aligned_cols=199 Identities=28% Similarity=0.458 Sum_probs=163.5
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------c
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------R 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------~ 678 (1623)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+ +
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 77 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS-VLIDGTDINKLKGKALRQLR 77 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce-EEECCEeccccCHhHHHHHH
Confidence 468999999963 257999999999999999999999999999999999999999984 322 1
Q ss_pred CcEEEEccCcccCc-ccHHHHHhcCCC------------CC---HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccC
Q 000351 679 GTVAYVPQVSWIFN-ATVRDNILFGSA------------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~-~Tv~enI~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 742 (1623)
..++|++|++.++. .||+||+.++.. .. .++..+.++..++.+. ....+.+||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 146 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLS 146 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCC
Confidence 35999999998874 799999986421 11 1223344455554332 234557899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEe
Q 000351 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEE 820 (1623)
Q Consensus 743 GGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~ 820 (1623)
|||||||+||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++++.
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999886655433 4899999999999987 6899999999999999
Q ss_pred cChhHHh
Q 000351 821 GTFEDLS 827 (1623)
Q Consensus 821 g~~~~l~ 827 (1623)
|+++++.
T Consensus 227 ~~~~~~~ 233 (241)
T cd03256 227 GPPAELT 233 (241)
T ss_pred cCHHHhh
Confidence 9988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=337.58 Aligned_cols=198 Identities=29% Similarity=0.461 Sum_probs=163.9
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------c
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------R 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------~ 678 (1623)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+ +
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS-ILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccE-EEECCEEhhhCCHHHHHHHH
Confidence 689999999962 357999999999999999999999999999999999999999984 332 2
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCC------------CC---HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccC
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSA------------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 742 (1623)
..++|++|++.++ +.||+||+.++.. .. .++..+.++.+++.+.+ .....+||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS 147 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLS 147 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCC
Confidence 3499999999887 4799999987531 01 12344455555554433 23456899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEe
Q 000351 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEE 820 (1623)
Q Consensus 743 GGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~ 820 (1623)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++. .||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999999876654433 3899999999999985 5899999999999999
Q ss_pred cChhHH
Q 000351 821 GTFEDL 826 (1623)
Q Consensus 821 g~~~~l 826 (1623)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=337.30 Aligned_cols=197 Identities=27% Similarity=0.369 Sum_probs=166.0
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------CcEEEE
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------GTVAYV 684 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------~~iay~ 684 (1623)
..|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++| .+.+. ..++|+
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAGTAPLAEAREDTRLM 86 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEHHHhhCceEEE
Confidence 46999999999963 5799999999999999999999999999999999999999998 44332 359999
Q ss_pred ccCcccCc-ccHHHHHhcCCCC-CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q 000351 685 PQVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 762 (1623)
Q Consensus 685 ~Q~~~l~~-~Tv~enI~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~il 762 (1623)
+|++.++. .||+||+.++... .+++..+.++..++.+..+ ....+||||||||++||||++.+|+++
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998875 7999999876321 2345566677777654433 334689999999999999999999999
Q ss_pred EEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 763 IFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 763 lLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
||||||++||+.+.+.+.+.+..... .++|+|++||+++++. .||+|++|++|+++++|+.+
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999886654333 4899999999999875 58999999999999988754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=334.33 Aligned_cols=191 Identities=28% Similarity=0.434 Sum_probs=157.0
Q ss_pred EEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------
Q 000351 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 677 (1623)
++++|++++|++.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|. +.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE-VRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCcee-EEECCEehhhcchhHHHHH
Confidence 46899999996421 157999999999999999999999999999999999999999984 322
Q ss_pred -cCcEEEEccCcccCc-ccHHHHHhcCCCC---C----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 678 -RGTVAYVPQVSWIFN-ATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 678 -~~~iay~~Q~~~l~~-~Tv~enI~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+..++|++|++.++. .|++||+.++... + ++++.+.++..++.+.++ ....+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr 148 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQR 148 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHH
Confidence 135999999999885 5999999875321 1 234455666666654333 3345899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEE
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMV 817 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 817 (1623)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++..||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999999886654433 48999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=341.62 Aligned_cols=201 Identities=31% Similarity=0.453 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------cCc
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------RGT 680 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~~~ 680 (1623)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|. +.+ +..
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK-VLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEECCccccHHHHHhh
Confidence 789999999963 356999999999999999999999999999999999999999983 322 235
Q ss_pred EEEEccCcc--cCcccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 681 VAYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 681 iay~~Q~~~--l~~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
|+|++|+|. +++.|++|||.++.. .+ .++..++++..++.+..+. ....||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~l 147 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVAL 147 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHH
Confidence 999999986 467899999987632 22 2334555666666544433 345899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
|||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999988665443458999999999999988999999999999999999887643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=382.41 Aligned_cols=223 Identities=24% Similarity=0.366 Sum_probs=180.2
Q ss_pred cEEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecC----------
Q 000351 1238 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA---------- 1305 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~---------- 1305 (1623)
.|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---Hhh-hceEEEcCCC--cccc-ccHHhhcCCC----CCCCH----HHHHHHHHHhcHHHHHHhccCCcchhhh
Q 000351 1306 KFGLM---DLR-KILGIIPQSP--VLFS-GTVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVS 1370 (1623)
Q Consensus 1306 ~i~~~---~lR-~~i~~vpQdp--~Lf~-gTIr~NLd~~----~~~sd----~~i~~aL~~~~l~~~i~~lp~gLdt~v~ 1370 (1623)
+.+.. .+| ++|++|+|+| .++. .||++|+... ...+. +++.++|+.+++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 233 4799999999 5776 4999999631 11222 234445555444210 12344
Q ss_pred cCCCCCChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhc-cCEEEEEe
Q 000351 1371 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLD 1447 (1623)
Q Consensus 1371 e~G~~LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~-~~TvI~IaHrl~ti~~-~DrI~Vl~ 1447 (1623)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4556899999999999999999999999999999999999999999999875 3 7899999999999977 99999999
Q ss_pred CceEeeecChhHHhhcCCChH
Q 000351 1448 SGRVLEYDTPEELLSNEGSSF 1468 (1623)
Q Consensus 1448 ~G~ive~Gtp~eLl~~~~~~f 1468 (1623)
+|+|++.|++++++..+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999976543333
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=331.19 Aligned_cols=195 Identities=23% Similarity=0.332 Sum_probs=165.1
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceE
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++. ++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 49999999999643 699999999999999999999999999999999999999999999999998752 3466799
Q ss_pred EEcCCCccccc-cHHhhcCCC----CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1318 ~vpQdp~Lf~g-TIr~NLd~~----~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
|+||++.++.+ |+++|+... +...++.+.++++..++.+ ........||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-----------YEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-----------hccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999887 999998532 1112333445555554432 2233345799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeC
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 1448 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1448 (1623)
+|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998754 47899999999999977 999999974
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=328.98 Aligned_cols=193 Identities=23% Similarity=0.300 Sum_probs=162.3
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999875 34567889999
Q ss_pred EcCCCcccc-ccHHhhcCCCC--CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCCc
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~--~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p~ 1395 (1623)
+||++.++. .|+++|+.... ...+..+.++++..++.+ .......+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-----------LIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-----------hhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999999874 69999996421 112233444454444332 2223334799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEE
Q 000351 1396 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 1445 (1623)
Q Consensus 1396 ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~V 1445 (1623)
+|||||||++||+.+.+.+.+.|++.. +++|+|+|||+.+.+.+||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999863 57899999999999999997654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=334.89 Aligned_cols=202 Identities=28% Similarity=0.444 Sum_probs=166.0
Q ss_pred EEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------
Q 000351 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 677 (1623)
|+++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS-VLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHH
Confidence 78999999996421 127999999999999999999999999999999999999999984 322
Q ss_pred cCcEEEEccCcccCc-ccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHH
Q 000351 678 RGTVAYVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 678 ~~~iay~~Q~~~l~~-~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 749 (1623)
+..|+|++|++.++. .|++||+.++.. .+. ++..+.++..++.+.++. ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRV 149 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHH
Confidence 235999999999985 799999986521 221 234455555665543333 3458999999999
Q ss_pred HHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
+||||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998866554333 899999999999976 48999999999999999988775
Q ss_pred h
Q 000351 828 N 828 (1623)
Q Consensus 828 ~ 828 (1623)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=338.91 Aligned_cols=205 Identities=23% Similarity=0.369 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc-----CCCCCeEEE----------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAVI---------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~~---------- 677 (1623)
+.++++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++| .+.+
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~ 80 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG-EILLDGENIYDPHV 80 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCce-EEEECCEEcccccc
Confidence 56999999999963 579999999999999999999999999999999999864 4677 3322
Q ss_pred -----cCcEEEEccCcccCcccHHHHHhcCCC---C-C----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 678 -----RGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 678 -----~~~iay~~Q~~~l~~~Tv~enI~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
+..|+|++|++.+++.|++||+.++.. . + .++..+.++.+++.+.+. +..+....+||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 153 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGG 153 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 235999999999988899999987521 1 1 234445566666643332 1234566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
|||||+||||++.+|+++||||||++||+.+.+++.+.+.. ..+++|+|++||+++++. .||+|++|++|++++.|++
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE-LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999886554 345799999999999985 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14242 233 EQIFTR 238 (253)
T ss_pred HHHHcC
Confidence 887643
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=353.50 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=171.7
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------Cc
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GT 680 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~ 680 (1623)
...++++|++++|++ .++|+|+||+|++|++++|+|||||||||||++|+|+.+|++| .+.+. ..
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG-QIMLDGVDLSHVPPYQRP 92 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCC
Confidence 456999999999963 5699999999999999999999999999999999999999998 44332 35
Q ss_pred EEEEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 681 VAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 iay~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
||||+|++.+| ..||+|||.|+.. .+. ++..+.++..++.+..+..| .+|||||||||+||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 99999999998 5699999998732 222 23455566666655444433 48999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
|||+.+|+++|||||||+||+...+.+.+.+..... .|.|+|+||||.+++ ..||+|++|++|++++.|+++++..+.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999876655433 489999999999986 469999999999999999999987653
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=327.80 Aligned_cols=198 Identities=29% Similarity=0.467 Sum_probs=173.7
Q ss_pred cEEEEEEEEEeCCCC-------CCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH
Q 000351 1238 SIKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~-------~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~ 1310 (1623)
-++++|+++.|+... -.+++||||+|++||.+||||.|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 26899999999999999999999999999999999999999999999999987765
Q ss_pred HhhhceEEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHhcHHH-HHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1311 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1311 ~lR~~i~~vpQdp~Lf~gTIr~NLd~~~~~sd~~i~~aL~~~~l~~-~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
.+..++++.+.|+.+++.+ +..+.| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 1223466888999988765 555554 4799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHhhcCCC
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1466 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl~~~~~ 1466 (1623)
|.-+|+++++|||||+||.-..+.|.+.+.+.- .+-|.++|||+++.+.. ||||+||..|+|||.|+.+++.+++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998754 37899999999999998 999999999999999999999998877
Q ss_pred hHHHHHHHh
Q 000351 1467 SFSKMVQST 1475 (1623)
Q Consensus 1467 ~f~~l~~~~ 1475 (1623)
.|.+..-++
T Consensus 204 pYTk~Ll~a 212 (268)
T COG4608 204 PYTKALLSA 212 (268)
T ss_pred HHHHHHHHh
Confidence 777655443
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=330.59 Aligned_cols=188 Identities=30% Similarity=0.519 Sum_probs=156.9
Q ss_pred EEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------CcEEEEccCc
Q 000351 617 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------GTVAYVPQVS 688 (1623)
Q Consensus 617 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------~~iay~~Q~~ 688 (1623)
++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+. ..++|++|++
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG-SIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCccHHHHHhheEEecccc
Confidence 6789999963 5699999999999999999999999999999999999999999 55543 3599999998
Q ss_pred cc---CcccHHHHHhcCCCC-----------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 689 WI---FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 689 ~l---~~~Tv~enI~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
.+ ++.|++||+.++... .+++..++++..++.+.++.. ..+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHH
Confidence 76 568999999875321 123456677777776554432 35799999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEe
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 820 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 820 (1623)
+..+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++| +++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999988665544468999999999999865 8999999886 4443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=346.31 Aligned_cols=201 Identities=25% Similarity=0.401 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------cCc
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGT 680 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------~~~ 680 (1623)
..|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++| .+.+ +..
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~ 78 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG-KITVLGEPVPSRARLARVA 78 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECcccHHHHhhc
Confidence 46899999999963 5799999999999999999999999999999999999999998 4332 246
Q ss_pred EEEEccCcccC-cccHHHHHhcC-C--CCCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 681 VAYVPQVSWIF-NATVRDNILFG-S--AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 iay~~Q~~~l~-~~Tv~enI~~g-~--~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
+||+||++.++ +.|++||+.+. . ..+.. +..+.++..++.+..+ ....+||||||||++||
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-----------VRVALLSGGMKRRLTLA 147 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CchhhCCHHHHHHHHHH
Confidence 99999999887 57999999742 1 12222 2334455555543322 23457999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
||++.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|+++..|+++++..
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999866554446899999999999986 589999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=331.87 Aligned_cols=198 Identities=28% Similarity=0.511 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------cCcEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 682 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------~~~ia 682 (1623)
++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|.++|++| .+.+ +..++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG-TAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccchHHHhhhEE
Confidence 4789999999632 25799999999999999999999999999999999999999998 4332 23599
Q ss_pred EEccCcccC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 683 YVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l~-~~Tv~enI~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
|++|++.++ +.|++||+.++. ..+. ++..+.++.+++.+..+. ...+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-----------RARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------hhhhCCHHHHHHHHHHHH
Confidence 999999887 689999998642 1221 345566666666543332 335899999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 826 (1623)
++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILE-VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999875544 3456999999999999864 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=303.30 Aligned_cols=216 Identities=27% Similarity=0.416 Sum_probs=185.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCC----------
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---------- 1307 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i---------- 1307 (1623)
.++++|+.++|++. .|||+||++.++|+.|.|+|-|||||||+++++.=+-.|+.|+|.++|..|...
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48999999999765 699999999999999999999999999999999999999999999999887432
Q ss_pred ---ChHHhhhceEEEcCCCccccc-cHHhhcC--CCC--CCCH-HHHH---HHHHHhcHHHHHHhccCCcchhhhcCCCC
Q 000351 1308 ---GLMDLRKILGIIPQSPVLFSG-TVRFNLD--PFS--EHSD-ADLW---EALERAHLKDAIRRNSLGLDAQVSEAGEN 1375 (1623)
Q Consensus 1308 ---~~~~lR~~i~~vpQdp~Lf~g-TIr~NLd--~~~--~~sd-~~i~---~aL~~~~l~~~i~~lp~gLdt~v~e~G~~ 1375 (1623)
.++.+|+++++|+|...|++. ||-+|+- |.. ..+. +.+. .-|.++|+.+--+.. ...
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----------P~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY-----------PAH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC-----------ccc
Confidence 245579999999999999976 9999984 321 1222 2222 235556665544443 357
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1376 LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
|||||+||.+|||||.-+|+++++|||||+|||+---.+.+.+++.. .|+|+++|||.+...++ +..|+.+.+|+|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999999999998876 58999999999999998 99999999999999
Q ss_pred ecChhHHhhcCCC
Q 000351 1454 YDTPEELLSNEGS 1466 (1623)
Q Consensus 1454 ~Gtp~eLl~~~~~ 1466 (1623)
.|+|+++..++.|
T Consensus 233 ~G~P~qvf~nP~S 245 (256)
T COG4598 233 EGPPEQVFGNPQS 245 (256)
T ss_pred cCChHHHhcCCCC
Confidence 9999999988765
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=334.48 Aligned_cols=200 Identities=20% Similarity=0.365 Sum_probs=165.6
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc------------CcEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------GTVA 682 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------~~ia 682 (1623)
++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+. ..++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ-ISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcccCChhhhhhEE
Confidence 789999999963 57999999999999999999999999999999999999999983 3322 2599
Q ss_pred EEccCccc-CcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 683 YVPQVSWI-FNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l-~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
|++|++.+ ++.|++||+.++.. ... ++..+.++..++.+. .+....+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999988 57899999986422 222 223334444444322 344556899999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
++.+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999998665433 248999999999999988999999999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=341.87 Aligned_cols=204 Identities=25% Similarity=0.421 Sum_probs=170.3
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------- 677 (1623)
+.++++|+++.|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|. +.+
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE-EEECCEECCCCcchHHHH
Confidence 36999999999963 357999999999999999999999999999999999999999983 322
Q ss_pred cCcEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 678 RGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 678 ~~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+..|+|++|+| .+++.|++||+.++.. +.. ++..++++.+++.+.. .....+||||||||
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qr 149 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKR 149 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHH
Confidence 23599999998 5678999999987521 221 3445566777775433 23456899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 826 (1623)
++|||||+.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998865543333 899999999999986 6999999999999999999998
Q ss_pred hhcC
Q 000351 827 SNNG 830 (1623)
Q Consensus 827 ~~~~ 830 (1623)
....
T Consensus 230 ~~~~ 233 (283)
T PRK13636 230 FAEK 233 (283)
T ss_pred hcCH
Confidence 7543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=330.68 Aligned_cols=192 Identities=31% Similarity=0.468 Sum_probs=158.9
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVAY 683 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~iay 683 (1623)
++++|+++.|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+. ..++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~v~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG-RIYIGGRDVTDLPPKDRDIAM 76 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCcccceEEE
Confidence 468999999963 5799999999999999999999999999999999999999998 43332 25999
Q ss_pred EccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHH
Q 000351 684 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 684 ~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal 755 (1623)
++|++.++ +.|++||+.++.. .+. ++..+.++..++.+..+. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999987 5799999987521 222 233445556666544333 3458999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 821 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 821 (1623)
+.+|+++||||||++||+++.+++++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999886655433 38999999999998765 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=353.27 Aligned_cols=201 Identities=29% Similarity=0.477 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+ +++
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG-~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG-TVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEEcCcCCHHHHhcc
Confidence 589999999996 36799999999999999999999999999999999999999998 4332 235
Q ss_pred EEEEccCccc-CcccHHHHHhcCCC-----C------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 681 VAYVPQVSWI-FNATVRDNILFGSA-----F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 681 iay~~Q~~~l-~~~Tv~enI~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
|||++|++.+ ++.|++||+.++.. + +.++.+++++..++.+..+. ...+||||||||
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQR 147 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQR 147 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHH
Confidence 9999999987 58999999987641 1 12345666777777544432 345899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
++|||||+++|+++||||||++||+.+...+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|++++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999998765544345899999999999985 58999999999999999999987
Q ss_pred hc
Q 000351 828 NN 829 (1623)
Q Consensus 828 ~~ 829 (1623)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 64
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=372.14 Aligned_cols=219 Identities=25% Similarity=0.435 Sum_probs=179.3
Q ss_pred cEEEEEEEEEeCCC--CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC-----CCcEEEECCEecCCCChH
Q 000351 1238 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 1310 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p-----~~G~I~IdG~di~~i~~~ 1310 (1623)
.|+++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 23699999999999999999999999999999999999986 799999999999877654
Q ss_pred H---hh-hceEEEcCCCc--ccc-ccHHhhcCC----CCCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCC
Q 000351 1311 D---LR-KILGIIPQSPV--LFS-GTVRFNLDP----FSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375 (1623)
Q Consensus 1311 ~---lR-~~i~~vpQdp~--Lf~-gTIr~NLd~----~~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~ 1375 (1623)
. .| ++++||||+|. ++. .|+++|+.. ....+ ++++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 33 57999999985 444 489988752 11122 23345555555543210 112334567
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhc-cCEEEEEeCceEe
Q 000351 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1452 (1623)
Q Consensus 1376 LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1452 (1623)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999864 37899999999999876 9999999999999
Q ss_pred eecChhHHhhcC
Q 000351 1453 EYDTPEELLSNE 1464 (1623)
Q Consensus 1453 e~Gtp~eLl~~~ 1464 (1623)
+.|+++++....
T Consensus 237 ~~g~~~~~~~~~ 248 (529)
T PRK15134 237 EQNRAATLFSAP 248 (529)
T ss_pred EeCCHHHHhhCC
Confidence 999999987643
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=333.21 Aligned_cols=199 Identities=24% Similarity=0.397 Sum_probs=163.1
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------cCc
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------RGT 680 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~~~ 680 (1623)
++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+ +..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccCCHhHHHhcc
Confidence 468999999963 57999999999999999999999999999999999999999984 322 135
Q ss_pred EEEEccCcccCc-ccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 681 VAYVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 iay~~Q~~~l~~-~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
++|++|++.++. .|++||+.++.+ ... ++..+.++..++.+. ......+||||||||++||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 145 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIA 145 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHH
Confidence 999999998876 599999986532 121 123344444444332 2344568999999999999
Q ss_pred HHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999998865544345899999999998765 589999999999999999888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=341.79 Aligned_cols=199 Identities=28% Similarity=0.416 Sum_probs=165.2
Q ss_pred EEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-----------------c
Q 000351 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------------R 678 (1623)
Q Consensus 616 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-----------------~ 678 (1623)
.++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+ +
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK-VLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccChhhhhhhhc
Confidence 4556777765 356899999999999999999999999999999999999999883 322 1
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
..++|++|++.++ +.|++||+.++.. .+ +++..++++..++.+.++..+ .+||||||||++
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~ 170 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVG 170 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHH
Confidence 3599999999987 5799999986421 22 234556677777766555544 479999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999886654333 3899999999999875 589999999999999999998865
Q ss_pred c
Q 000351 829 N 829 (1623)
Q Consensus 829 ~ 829 (1623)
.
T Consensus 251 ~ 251 (269)
T cd03294 251 N 251 (269)
T ss_pred C
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=348.78 Aligned_cols=203 Identities=24% Similarity=0.406 Sum_probs=168.0
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------cC
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RG 679 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------~~ 679 (1623)
...|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+ +.
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G-~i~i~G~~~~~~~~~~~~ 114 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAG-KITVLGVPVPARARLARA 114 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce-EEEECCEECCcchHHHhc
Confidence 356999999999963 5799999999999999999999999999999999999999998 4433 23
Q ss_pred cEEEEccCcccC-cccHHHHHhcC-C--CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 680 TVAYVPQVSWIF-NATVRDNILFG-S--AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 680 ~iay~~Q~~~l~-~~Tv~enI~~g-~--~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
.|||+||++.++ ..|++||+.+. . ..+. ++..+.++.+++.+.. .....+||||||||++|
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTL 183 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHH
Confidence 599999999986 78999999752 1 1121 2233444555543322 22335899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||||+++|+++||||||++||+.+.+++++.+.....+|+|+|++||+++.+. .||+|++|++|+++..|+.+++.+.
T Consensus 184 A~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999999876554446899999999999986 5899999999999999999998643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=330.80 Aligned_cols=199 Identities=29% Similarity=0.502 Sum_probs=161.2
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------cCc
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------RGT 680 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~~~ 680 (1623)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+ +..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS-IRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCCCCHHHHHhcC
Confidence 468999999963 57999999999999999999999999999999999999999984 322 235
Q ss_pred EEEEccCcccCc-ccHHHHHhcCCCCC--H---HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 681 VAYVPQVSWIFN-ATVRDNILFGSAFE--P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 681 iay~~Q~~~l~~-~Tv~enI~~g~~~~--~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
++|++|++.++. .|++||+.++.... . ++...+++... .++ ........+||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~----~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLK----ERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhh----hhhhCchhhCCHHHHHHHHHHHH
Confidence 999999998876 59999998764321 1 12222333321 111 12334567899999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999998866544336899999999999875 58999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=371.25 Aligned_cols=212 Identities=22% Similarity=0.362 Sum_probs=176.5
Q ss_pred EEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChH-HhhhceEEE
Q 000351 1241 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILGII 1319 (1623)
Q Consensus 1241 ~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~-~lR~~i~~v 1319 (1623)
++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.. .+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3699999999999999999999999999999999999999999999999999766543 457789999
Q ss_pred cCCCccccc-cHHhhcCCCC----C--CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhc
Q 000351 1320 PQSPVLFSG-TVRFNLDPFS----E--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1320 pQdp~Lf~g-TIr~NLd~~~----~--~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~ 1392 (1623)
||++.+|.. |+++|+.... . .+.++..+ .+.+.++.+ |++........+||||||||++|||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 999987754 9999997421 1 12222221 122333332 45444455567899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1393 ~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998864 47899999999999876 9999999999999999998864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=335.74 Aligned_cols=204 Identities=22% Similarity=0.329 Sum_probs=169.5
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc---CCCCCeEEE-------------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAVI------------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~---~~~g~~~~~------------- 677 (1623)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++| .+.+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G-~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG-LVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce-EEEECCEecccCCHHHH
Confidence 4789999999963 579999999999999999999999999999999999974 5778 3332
Q ss_pred cCcEEEEccCcccCcccHHHHHhcCCC---C------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 678 RGTVAYVPQVSWIFNATVRDNILFGSA---F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 678 ~~~iay~~Q~~~l~~~Tv~enI~~g~~---~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+..|+|++|++.+++.|++||+.++.. . .+++..+.++.+++.+.+.. .....+.+||||||||
T Consensus 78 ~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qr 150 (246)
T PRK14269 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQR 150 (246)
T ss_pred hhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHH
Confidence 235999999999999999999987521 1 11244566777777544432 1344667899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
++||||++++|+++||||||++||+.+..++.+.+.. ..+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE-LSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999875544 345899999999999876 58999999999999999999876
Q ss_pred hc
Q 000351 828 NN 829 (1623)
Q Consensus 828 ~~ 829 (1623)
..
T Consensus 230 ~~ 231 (246)
T PRK14269 230 EN 231 (246)
T ss_pred hC
Confidence 43
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=341.58 Aligned_cols=205 Identities=26% Similarity=0.446 Sum_probs=167.3
Q ss_pred cEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------
Q 000351 614 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------- 677 (1623)
.|+++|+++.|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|. +.+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchH
Confidence 478999999997321 257999999999999999999999999999999999999999983 322
Q ss_pred ---cCcEEEEccCc--ccCcccHHHHHhcCC---CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHH
Q 000351 678 ---RGTVAYVPQVS--WIFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 678 ---~~~iay~~Q~~--~l~~~Tv~enI~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
+..|+|++|+| .+++.|++|||.++. ..+. ++..+.++.+++..++ ......+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHH
Confidence 12589999998 467889999998752 1222 2345556666664221 123446899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 746 kqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
|||++|||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998765543345899999999999875 58999999999999999999
Q ss_pred HHhhc
Q 000351 825 DLSNN 829 (1623)
Q Consensus 825 ~l~~~ 829 (1623)
++...
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 87653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=369.76 Aligned_cols=211 Identities=26% Similarity=0.370 Sum_probs=174.2
Q ss_pred cEEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCCh-HHhhhce
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~-~~lR~~i 1316 (1623)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999976543 3467889
Q ss_pred EEEcCCCccccc-cHHhhcCCCC-----C-CCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHh
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFS-----E-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 1389 (1623)
Q Consensus 1317 ~~vpQdp~Lf~g-TIr~NLd~~~-----~-~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARA 1389 (1623)
+|+||++.+|.. |+++|+.... . ....+..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999998876 9999997421 1 11111111 122333332 33333334456799999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecCh
Q 000351 1390 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1390 LL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp 1457 (1623)
|+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999864 47899999999999877 999999999999977654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=376.38 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=84.5
Q ss_pred hhcCCCCCChhHHHHHHHHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEE
Q 000351 1369 VSEAGENFSVGQRQLLSLSRALLRR--SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 1445 (1623)
Q Consensus 1369 v~e~G~~LSgGQrQrLaLARALL~~--p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~V 1445 (1623)
++....+|||||-||+-||+.|=.+ -=+.||||||.+|-+.--..+.++|++.. .|.|||+|-|+.++|+.||.|+-
T Consensus 1381 L~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iid 1460 (1809)
T PRK00635 1381 LGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIH 1460 (1809)
T ss_pred ccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 3456778999999999999999776 24679999999999999999999998876 58999999999999999999999
Q ss_pred Ee------CceEeeecChhHHhhc
Q 000351 1446 LD------SGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1446 l~------~G~ive~Gtp~eLl~~ 1463 (1623)
|- .|+|+.+|+|++++++
T Consensus 1461 iGPgAG~~GG~iv~~G~~~~l~~~ 1484 (1809)
T PRK00635 1461 LGPGSGPQGGYLLSTSALKQSQPD 1484 (1809)
T ss_pred eCCCccCCCCEEEecCCHHHHhhh
Confidence 93 6999999999999753
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=340.47 Aligned_cols=205 Identities=24% Similarity=0.399 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCC--CeEEE-------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAVI------------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g--~~~~~------------- 677 (1623)
..++++|+++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++| +.+.+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999642 35799999999999999999999999999999999999999872 24432
Q ss_pred cCcEEEEccCcc--cCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 678 RGTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 678 ~~~iay~~Q~~~--l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+..|||++|+|. +++.||+|||.++.. .+. ++..+.++.+++.+..+..| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 235999999984 568899999987632 222 33556677777765555444 5899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999886654333 389999999999999889999999999999999998876
Q ss_pred hc
Q 000351 828 NN 829 (1623)
Q Consensus 828 ~~ 829 (1623)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 54
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=335.74 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCC-----CCCeEEE----------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAVI---------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~~~---------- 677 (1623)
..++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|. +.+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~ 81 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGN-VIYEGKNIYSNNF 81 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceE-EEECCEecccccc
Confidence 46999999999963 56999999999999999999999999999999999999874 663 221
Q ss_pred -----cCcEEEEccCcccCcccHHHHHhcCCC----CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 678 -----RGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 678 -----~~~iay~~Q~~~l~~~Tv~enI~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
+..|+|++|++.+++.||+|||.++.. .+. ++..++++.+++.+.+. + .....+.+||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG 154 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGG 154 (254)
T ss_pred cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHH
Confidence 235999999999988999999987632 121 23344555555532221 1 123456789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
|||||+||||++.+|+++||||||++||+.+.+.+++.+.. ..+++|+|++||+++++. .||+|++|++|++++.|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 233 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESST 233 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999885544 345799999999999975 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++.++
T Consensus 234 ~~~~~~ 239 (254)
T PRK14273 234 DELFFN 239 (254)
T ss_pred HHHHhC
Confidence 988643
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.68 Aligned_cols=204 Identities=28% Similarity=0.408 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCC-----CCCeEEE-----------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAVI----------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~~~----------- 677 (1623)
+++++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|+|.++|+ +|. +.+
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~-i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKID 76 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceE-EEECCEEccccccc
Confidence 3789999999963 46999999999999999999999999999999999999987 883 322
Q ss_pred ----cCcEEEEccCcccCcccHHHHHhcCCC----CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHH
Q 000351 678 ----RGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 678 ----~~~iay~~Q~~~l~~~Tv~enI~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
+..|+|+||++.+++.|++||+.++.. .+. ++..++++..++.+.++ ........+|||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQ 149 (247)
T ss_pred hHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHH
Confidence 235999999999988999999987521 121 23445556666653221 12344557899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 746 kqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
|||++||||++.+|+++||||||++||+.+.+.+++.+.. ..+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE-LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTE 228 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999875544 334589999999999876 58999999999999999998
Q ss_pred HHhhc
Q 000351 825 DLSNN 829 (1623)
Q Consensus 825 ~l~~~ 829 (1623)
++...
T Consensus 229 ~~~~~ 233 (247)
T TIGR00972 229 QIFTN 233 (247)
T ss_pred HHHhC
Confidence 87643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=326.65 Aligned_cols=193 Identities=25% Similarity=0.322 Sum_probs=165.6
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+.. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .. .|+++++
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 7999999999643 69999999999999999999999999999999999999999999999998753 22 7889999
Q ss_pred EcCCCccc-cccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1319 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1319 vpQdp~Lf-~gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
++|++.++ ..|+++|+.... ...++++.++++..++.+.... ....||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----------PFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 569999986421 2345567777777777653322 22479999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEEEeC
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDS 1448 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1448 (1623)
++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. |+++-++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998753 57899999999999988 99988754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=330.12 Aligned_cols=192 Identities=23% Similarity=0.411 Sum_probs=157.7
Q ss_pred EEEEeeEEEcCCCC-CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc---------------
Q 000351 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------- 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------------- 678 (1623)
++++|++++|++.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|. +.+.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE-VLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcCHhHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999984 3221
Q ss_pred --CcEEEEccCcccC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 679 --GTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 679 --~~iay~~Q~~~l~-~~Tv~enI~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
..|+|++|++.++ +.|++||+.++. .++. ++..+.++..++.+.++. ...+||||||||
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr 149 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQR 149 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHH
Confidence 3599999999887 579999998642 1221 234455566665443333 335899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 818 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 818 (1623)
++||||++.+|+++||||||++||+++.+.+.+.+..... .|+|+|++||+++++..+|+|++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999886554333 389999999999999889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=328.93 Aligned_cols=195 Identities=24% Similarity=0.395 Sum_probs=160.0
Q ss_pred EEEEeeEEEcCCCCC-CCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------cCcE
Q 000351 615 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 681 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 681 (1623)
++++|+++.|+.... +++|+|+||++++|++++|+|+||||||||+++|+|+++|++| .+.+ +..+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEEcccCHHHHHhhE
Confidence 689999999974211 2799999999999999999999999999999999999999998 4333 2359
Q ss_pred EEEccCcccCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 682 AYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 682 ay~~Q~~~l~~-~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
+|++|++.++. .|++||+.+... .+ .++..+.++..++.+.++ ....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 99999998886 599999975321 12 233455566666654333 345689999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 821 (1623)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++. .||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998866554445899999999999876 58999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=336.57 Aligned_cols=204 Identities=30% Similarity=0.438 Sum_probs=169.8
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cC
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 679 (1623)
..++++|+++.|++ .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+ +.
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE-IKIDGITISKENLKEIRK 83 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEecCcCCHHHHhc
Confidence 46999999999963 2467999999999999999999999999999999999999999983 322 23
Q ss_pred cEEEEccCcc--cCcccHHHHHhcCCC---CCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~~--l~~~Tv~enI~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.|+|++|+|. +++.|++|||.++.. ++.+ +..++++..++.+.++.. ..+||||||||++
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 152 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVA 152 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHH
Confidence 5999999984 457899999987521 2332 244556666766554443 3589999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
|||||+.+|+++||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 153 IASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999866554334 5899999999999888999999999999999998887654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=332.55 Aligned_cols=200 Identities=28% Similarity=0.455 Sum_probs=165.3
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------cC
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------RG 679 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------~~ 679 (1623)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|. +.+ +.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD-LIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCChhHHHHhh
Confidence 689999999963 57999999999999999999999999999999999999999983 332 22
Q ss_pred cEEEEccCcccC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~~l~-~~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.++|++|++.++ ..||+||+.++. ..+. ++..++++..++.+.++ .....||||||||++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~ 146 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVA 146 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHH
Confidence 599999999887 579999998752 1222 23344455555543333 344689999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||||++.+|+++||||||++||+++.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999988655443458999999999999864 899999999999999999887643
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.71 Aligned_cols=196 Identities=25% Similarity=0.378 Sum_probs=162.5
Q ss_pred CcEEEEeeEEEcCCCCC-CCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------
Q 000351 613 PAISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------- 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------- 678 (1623)
+.++++|++++|++... .++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGE-VSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee-EEECCEEcccCCHHHHH
Confidence 46999999999974221 35999999999999999999999999999999999999999984 3221
Q ss_pred ----CcEEEEccCcccCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 679 ----GTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 679 ----~~iay~~Q~~~l~~-~Tv~enI~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
..++|++|++.++. .|++||+.++. ..+ .++..+.++.+++.+.++..+ .+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~ 152 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQ 152 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHH
Confidence 35999999998875 69999997642 112 234566677777765554433 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 820 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 820 (1623)
||++||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++..||++++|++|+++++
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999886655433 38999999999999888999999999998753
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=338.01 Aligned_cols=205 Identities=27% Similarity=0.418 Sum_probs=172.8
Q ss_pred CcEEEEeeEEEcCCCC---CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE------------
Q 000351 613 PAISIRNGYFSWDSKA---ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~---~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------ 677 (1623)
+.++++|++++|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|. +.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGK-VYVDGLDTSDEENLW 81 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeccccccHH
Confidence 3689999999997421 357999999999999999999999999999999999999999983 322
Q ss_pred --cCcEEEEccCcc--cCcccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 678 --RGTVAYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 678 --~~~iay~~Q~~~--l~~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
+..++|++|+|. +++.|+.||+.|+.. .+ +++++++++.+++.+.++..+ .+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~ 150 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQK 150 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHH
Confidence 235999999985 567799999988632 22 234566777788876655544 58999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhH
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 825 (1623)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|+++++|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999876554333 4899999999999988899999999999999999999
Q ss_pred Hhhc
Q 000351 826 LSNN 829 (1623)
Q Consensus 826 l~~~ 829 (1623)
+...
T Consensus 231 ~~~~ 234 (280)
T PRK13633 231 IFKE 234 (280)
T ss_pred HhcC
Confidence 8754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=327.12 Aligned_cols=192 Identities=23% Similarity=0.413 Sum_probs=158.9
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc---------CcEEEEc
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---------GTVAYVP 685 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~---------~~iay~~ 685 (1623)
++++|+++.|+ ++++++|+||++++|++++|+||||||||||+++|+|.++|++| .+.+. ..++|++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~i~~~~ 76 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG-EVLFDGKPLDIAARNRIGYLP 76 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCCchhHHHHccEEEec
Confidence 46899999996 35799999999999999999999999999999999999999998 44443 3599999
Q ss_pred cCcccCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhc
Q 000351 686 QVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757 (1623)
Q Consensus 686 Q~~~l~~-~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~ 757 (1623)
|++.++. .|++||+.++.. .. +++..+.++..++....+ ....+||||||||++||||++.
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 77 EERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred cCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhc
Confidence 9998875 699999976421 11 223445555555544333 3446899999999999999999
Q ss_pred CCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000351 758 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 758 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 821 (1623)
+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999998866554445899999999999886 48999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=337.54 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~ 680 (1623)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|.++|++| .+.+ +..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG-KVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-EEEECCEECCcCCHHHHhcc
Confidence 58999999999743234699999999999999999999999999999999999999999 4333 235
Q ss_pred EEEEccCcc--cCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 681 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 681 iay~~Q~~~--l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
|+|++|+|. +++.||.|||.++.. ... +++..+++.+++.+..+. ....||||||||++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 151 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAV 151 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHH
Confidence 999999984 568899999986521 222 234566677777544333 335899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 830 (1623)
||||+.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++++..||+|++|++|++++.|+++++....
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999999999999999999999998865543333 89999999999999889999999999999999999887543
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=338.34 Aligned_cols=202 Identities=23% Similarity=0.369 Sum_probs=166.4
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------- 677 (1623)
..++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGENIPAMSRSRLYT 81 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEccccChhhHHH
Confidence 4699999999996 357999999999999999999999999999999999999999984 322
Q ss_pred -cCcEEEEccCcccCc-ccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHH
Q 000351 678 -RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 747 (1623)
Q Consensus 678 -~~~iay~~Q~~~l~~-~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 747 (1623)
+..++|++|++.++. .|++||+.++. ..+. ++..+.++..++.+..+. ...+|||||||
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~q 150 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMAR 150 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHH
Confidence 235999999999886 59999997642 1222 223344555555433322 33589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 000351 748 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 748 RvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 825 (1623)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++.. ||+|++|++|++++.|++++
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999886654333 38999999999998865 89999999999999999999
Q ss_pred Hhhc
Q 000351 826 LSNN 829 (1623)
Q Consensus 826 l~~~ 829 (1623)
+.+.
T Consensus 231 ~~~~ 234 (269)
T PRK11831 231 LQAN 234 (269)
T ss_pred HhcC
Confidence 8754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=368.22 Aligned_cols=214 Identities=23% Similarity=0.398 Sum_probs=175.5
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccC--CCcEEEECCEecCCCChHH-hhhc
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRKI 1315 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p--~~G~I~IdG~di~~i~~~~-lR~~ 1315 (1623)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3699999999999999999999999999999999999987 7999999999998877654 4567
Q ss_pred eEEEcCCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHhcHHHHHHhccCCcchhh-hcCCCCCChhHHHHHHH
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSL 1386 (1623)
Q Consensus 1316 i~~vpQdp~Lf~g-TIr~NLd~~~~-------~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v-~e~G~~LSgGQrQrLaL 1386 (1623)
++||||+|.+|.. |+++|+..... ...++..+ .+.+.++.+ |++... ......||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988875 99999964211 11111111 122333332 332221 12245799999999999
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEeeecChhHHh
Q 000351 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461 (1623)
Q Consensus 1387 ARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~Gtp~eLl 1461 (1623)
||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999998864 47899999999999987 9999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=327.37 Aligned_cols=190 Identities=21% Similarity=0.367 Sum_probs=158.2
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc------------CcEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------GTVA 682 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------~~ia 682 (1623)
|+++|+++.|+. +++++|+||++++| +++|+||||||||||+++|+|+++|++| .+.+. ..++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCCccccchHHHHhheE
Confidence 478999999963 47999999999999 9999999999999999999999999999 44332 3599
Q ss_pred EEccCcccCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 683 YVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l~~-~Tv~enI~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
|++|++.++. .|++||+.+.. ..+ .++..+.++.+++.+..+. ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHH
Confidence 9999999885 59999997632 112 2344556677777654432 335799999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 821 (1623)
++++|+++||||||++||+.+.+++.+.+.. ..+++|+|++||+++++. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999886544 334699999999999986 58999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=324.92 Aligned_cols=192 Identities=22% Similarity=0.305 Sum_probs=162.1
Q ss_pred EEEEEEEEEeCCCCCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEECCEecCCCChHHhhhceEE
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ ...|++++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 5789999999643 6999999999999999999999999999999999999999999999999998765 456788999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCChhHHHHHHHHHhhhcCC
Q 000351 1319 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394 (1623)
Q Consensus 1319 vpQdp~Lf~-gTIr~NLd~~~---~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LSgGQrQrLaLARALL~~p 1394 (1623)
+||++.+|. .|+++|+..+. ...++++.++++..++.++..+ ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999996321 1123457777777777655432 23579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhccCEEEE
Q 000351 1395 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 1445 (1623)
Q Consensus 1395 ~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~V 1445 (1623)
++|||||||++||+.+.+.+.+.|++.. ++.|+|+|||+...+ .||+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999863 578999999998443 3577654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=335.62 Aligned_cols=202 Identities=27% Similarity=0.434 Sum_probs=166.4
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------- 677 (1623)
..++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|. +.+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS-IVVNGQTINLVRDKDGQL 79 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEccccccccccc
Confidence 46999999999963 57999999999999999999999999999999999999999883 221
Q ss_pred -----------cCcEEEEccCcccCc-ccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCC
Q 000351 678 -----------RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGER 737 (1623)
Q Consensus 678 -----------~~~iay~~Q~~~l~~-~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 737 (1623)
+..++|++|++.++. .|++||+.++. ..+. ++..+.++..++.+.+ .+..
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 235999999999885 69999997642 1221 2333444554543322 1234
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCE
Q 000351 738 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 816 (1623)
Q Consensus 738 g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 816 (1623)
..+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++++.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 56899999999999999999999999999999999999999988655433458999999999999885 89999999999
Q ss_pred EEEecChhHHhh
Q 000351 817 VKEEGTFEDLSN 828 (1623)
Q Consensus 817 i~~~g~~~~l~~ 828 (1623)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (257)
T PRK10619 230 IEEEGAPEQLFG 241 (257)
T ss_pred EEEeCCHHHhhh
Confidence 999999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=334.42 Aligned_cols=205 Identities=27% Similarity=0.383 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc-----CCCCCeEEE----------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAVI---------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~~---------- 677 (1623)
..++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++ |++|. +.+
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~-i~~~g~~~~~~~~ 87 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE-ILLDGENILTPKQ 87 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE-EEECCEEcccccc
Confidence 46999999999963 479999999999999999999999999999999999986 46773 221
Q ss_pred -----cCcEEEEccCcccCcccHHHHHhcCCC----CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 678 -----RGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 678 -----~~~iay~~Q~~~l~~~Tv~enI~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
+.+|+|++|++.++..|++||+.++.. .+. ++..++++..++..++. ...+....+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 235999999999988999999987532 222 23445566666543322 1245566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+. .||++++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999998765543 45789999999999886 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++.+.
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 888643
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=336.55 Aligned_cols=202 Identities=30% Similarity=0.469 Sum_probs=169.4
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
.++++|++++|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++| .+.+. ..
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG-SVLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhh
Confidence 5889999999963 24699999999999999999999999999999999999999998 43322 24
Q ss_pred EEEEccCcc--cCcccHHHHHhcCC---CCCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 681 VAYVPQVSW--IFNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 681 iay~~Q~~~--l~~~Tv~enI~~g~---~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
++|++|+|. +++.||+||+.++. ..+++ ++++.++.+++.+.++..+ ..||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~l 148 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAI 148 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHH
Confidence 999999983 67889999998653 23332 3456667777765554433 5899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||||+.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++++. .||+|++|++|++++.|+++++.+.
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999998866543333 899999999999985 6899999999999999999998754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.27 Aligned_cols=202 Identities=27% Similarity=0.427 Sum_probs=164.7
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-------------cCcE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTV 681 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~~i 681 (1623)
++++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+ +..+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE-IFIDGEDIREQDPVELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCeEcCcCChHHhhcce
Confidence 4689999999731 56999999999999999999999999999999999999999984 332 2358
Q ss_pred EEEccCcccC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 682 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 682 ay~~Q~~~l~-~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
+|++|++.++ ..|++||+.++.. .+. ++..+.++..++... ......+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHH
Confidence 9999999888 5799999987521 221 233444555554420 1123455789999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
|++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999999886655433 3899999999999865 589999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=335.45 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=169.1
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------- 678 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------- 678 (1623)
+..++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++| .+.+.
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG-EILLDAQPLESWSSKAFA 84 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEehhhCCHHHHh
Confidence 357999999999963 5799999999999999999999999999999999999999998 44332
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCC--------C---CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHH
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSA--------F---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~--------~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 746 (1623)
..++|++|++.++ ..|++||+.++.. . ++++....++.+++.+.++..+ .+||||||
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~ 153 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGER 153 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHH
Confidence 2599999998765 5699999987521 1 1234566677777765444433 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 747 qRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++. .||+|++|++|++++.|+.+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999876554333 3899999999999985 58999999999999999998
Q ss_pred HHhh
Q 000351 825 DLSN 828 (1623)
Q Consensus 825 ~l~~ 828 (1623)
++..
T Consensus 234 ~~~~ 237 (265)
T PRK10575 234 ELMR 237 (265)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=336.10 Aligned_cols=207 Identities=18% Similarity=0.294 Sum_probs=167.0
Q ss_pred CCCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc-----CCCCCeEEE--------
Q 000351 611 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAVI-------- 677 (1623)
Q Consensus 611 ~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~~-------- 677 (1623)
..+.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|. +.+
T Consensus 18 ~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~ 93 (268)
T PRK14248 18 KEHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGE-ILYEGLNILDS 93 (268)
T ss_pred CCceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceE-EEECCEEcccc
Confidence 3457999999999963 579999999999999999999999999999999999864 67773 322
Q ss_pred -------cCcEEEEccCcccCcccHHHHHhcCCCC----C----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccC
Q 000351 678 -------RGTVAYVPQVSWIFNATVRDNILFGSAF----E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742 (1623)
Q Consensus 678 -------~~~iay~~Q~~~l~~~Tv~enI~~g~~~----~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 742 (1623)
+..++|++|++.+++.|++||+.++... . +++..++++.+++...+. ...+..+.+||
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 166 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLS 166 (268)
T ss_pred cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCC
Confidence 2359999999999988999999865211 1 122333444444432211 12345667899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000351 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 743 GGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 821 (1623)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++++. .||+|++|++|++++.|
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE-LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHH-HhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999875544 445789999999999876 58999999999999999
Q ss_pred ChhHHhhc
Q 000351 822 TFEDLSNN 829 (1623)
Q Consensus 822 ~~~~l~~~ 829 (1623)
+++++..+
T Consensus 246 ~~~~~~~~ 253 (268)
T PRK14248 246 QTEQIFTS 253 (268)
T ss_pred CHHHHHhC
Confidence 99887654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=330.65 Aligned_cols=198 Identities=25% Similarity=0.369 Sum_probs=160.7
Q ss_pred EEEEEEEEEeCC----C-CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEEC--C--EecCCCCh
Q 000351 1239 IKFEDVVLRYRP----E-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID--G--FDIAKFGL 1309 (1623)
Q Consensus 1239 I~~~nVs~~Y~~----~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~Id--G--~di~~i~~ 1309 (1623)
|+++|++++|+. + .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+| | .++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999953 1 1369999999999999999999999999999999999999999999998 4 37766665
Q ss_pred HH---h-hhceEEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCCCC
Q 000351 1310 MD---L-RKILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 1377 (1623)
Q Consensus 1310 ~~---l-R~~i~~vpQdp~Lf~g-TIr~NLd~~---~~~s----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~LS 1377 (1623)
.. + +++++|+||+|.++.. |+++|+... .... ++++.++++..++.+. .....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER----------LWHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh----------hhhCCcccCC
Confidence 43 3 4579999999988865 999998631 1111 1233334444333221 1233456899
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEE
Q 000351 1378 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 1446 (1623)
Q Consensus 1378 gGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl 1446 (1623)
||||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||||+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999864 47899999999998875 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.29 Aligned_cols=201 Identities=30% Similarity=0.447 Sum_probs=165.3
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 677 (1623)
.++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT-IRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccccccchhh
Confidence 4899999999963 57999999999999999999999999999999999999999884 321
Q ss_pred -----cCcEEEEccCcccC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccCh
Q 000351 678 -----RGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 743 (1623)
Q Consensus 678 -----~~~iay~~Q~~~l~-~~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 743 (1623)
+..++|++|++.++ ..|++||+.++. ..+. ++..+.++..++... ......+|||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~ 147 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSG 147 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCCh
Confidence 23599999999887 579999997641 1222 223344444444322 2345578999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 000351 744 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 744 GQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 822 (1623)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999988655444458999999999999864 89999999999999999
Q ss_pred hhHHhhc
Q 000351 823 FEDLSNN 829 (1623)
Q Consensus 823 ~~~l~~~ 829 (1623)
.+++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9887643
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=350.44 Aligned_cols=204 Identities=26% Similarity=0.407 Sum_probs=169.4
Q ss_pred cEEEEeeEEEcCCCC---------------------CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCC
Q 000351 614 AISIRNGYFSWDSKA---------------------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~---------------------~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 672 (1623)
.|+++|+++.|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 478888888776431 12379999999999999999999999999999999999999998
Q ss_pred CeEEEc-----------------CcEEEEccCcccC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCC
Q 000351 673 ASAVIR-----------------GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLP 727 (1623)
Q Consensus 673 ~~~~~~-----------------~~iay~~Q~~~l~-~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~ 727 (1623)
.+.+. ..++|++|++.+| +.||+|||.++.. ++ .++..+.++.++|.+..+..|
T Consensus 84 -~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 84 -QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred -EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 33321 3699999999988 5799999987632 22 234556677777765555444
Q ss_pred CCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-h
Q 000351 728 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-Q 805 (1623)
Q Consensus 728 ~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~ 805 (1623)
.+|||||||||+|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|+|||+++++. .
T Consensus 163 -----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 163 -----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred -----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 48999999999999999999999999999999999999999887665433 4899999999999875 5
Q ss_pred cCEEEEEeCCEEEEecChhHHhhc
Q 000351 806 VDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 806 ~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||+|++|++|++++.|+++++...
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCEEEEEECCEEEecCCHHHHHhC
Confidence 899999999999999999998765
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=338.03 Aligned_cols=202 Identities=28% Similarity=0.494 Sum_probs=173.1
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc------------CcE
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------GTV 681 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------~~i 681 (1623)
.++++|+++.|+. ++.+|+||||+|++|+++|++||||||||||+++|+|.+.|++| .+.+. .+|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G-~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEEcCEeCccCHHHHHhhe
Confidence 5788999999973 36899999999999999999999999999999999999999999 44433 359
Q ss_pred EEEccCcccC-cccHHHHHhcC-----CC--CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 682 AYVPQVSWIF-NATVRDNILFG-----SA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 682 ay~~Q~~~l~-~~Tv~enI~~g-----~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
||+||+|.++ ..|++||+.|. .+ .++++.+++++..+|.++. ..+..+||||||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 9999999876 78999999763 21 2346777888888877622 2234689999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCC-cEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG-KTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||.++|+++|||||||||||.++..+++.+.....+| +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998766655556 799999999999876 899999999999999999887543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=338.61 Aligned_cols=205 Identities=23% Similarity=0.414 Sum_probs=166.3
Q ss_pred cEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------
Q 000351 614 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------- 677 (1623)
.++++|++++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGS-VRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccCH
Confidence 378999999997421 146999999999999999999999999999999999999999984 322
Q ss_pred ---cCcEEEEccCc--ccCcccHHHHHhcCCC---CCHHH----HHHHHHHhCchhHHhcCCCCCcccccCCCCccChHH
Q 000351 678 ---RGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 678 ---~~~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
+..|+|++|++ .+++.|++|||.++.. .+.+. ..++++..++.+. .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~ 150 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQ 150 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 13489999998 5778899999987521 22222 2334445555321 1233456899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 746 kqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998866544335899999999999886 58999999999999999998
Q ss_pred HHhhc
Q 000351 825 DLSNN 829 (1623)
Q Consensus 825 ~l~~~ 829 (1623)
++.+.
T Consensus 231 ~~~~~ 235 (280)
T PRK13649 231 DIFQD 235 (280)
T ss_pred HHhcC
Confidence 87654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=339.33 Aligned_cols=207 Identities=24% Similarity=0.389 Sum_probs=165.0
Q ss_pred CcEEEEeeEEEcCCCC--CCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEE--------------
Q 000351 613 PAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 676 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------- 676 (1623)
..|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|.++|++|....
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996421 136999999999999999999999999999999999999999984311
Q ss_pred ---EcCcEEEEccCcc--cCcccHHHHHhcCCC---CCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 677 ---IRGTVAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 677 ---~~~~iay~~Q~~~--l~~~Tv~enI~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
.+..|+|++|+|. +++.|++|||.++.. ...+ +..+.++..++..+ ..+....+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHH
Confidence 1235999999984 567899999987532 2221 22233444443211 123455789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecC
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 822 (1623)
||||++||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999876554333 3899999999999875 589999999999999999
Q ss_pred hhHHhhc
Q 000351 823 FEDLSNN 829 (1623)
Q Consensus 823 ~~~l~~~ 829 (1623)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=347.54 Aligned_cols=188 Identities=29% Similarity=0.445 Sum_probs=159.3
Q ss_pred CCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc---------------------CcEEEEccCc
Q 000351 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---------------------GTVAYVPQVS 688 (1623)
Q Consensus 630 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~---------------------~~iay~~Q~~ 688 (1623)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|. +.+. .+|+|++|++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~-I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS-VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 46899999999999999999999999999999999999999983 3322 3599999999
Q ss_pred ccCc-ccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000351 689 WIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 689 ~l~~-~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~ 760 (1623)
.+++ .||+||+.++.. .++ ++..+.++..+|.+..+..| .+|||||||||+|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9985 799999997632 222 34455666777755444333 4799999999999999999999
Q ss_pred EEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
|+|||||||+||+.+.+.+.+.+..... .++|+|+|||+++++ ..||+|++|++|++++.|+++++..+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999987766443 389999999999986 56899999999999999999999754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=335.39 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=168.7
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccC-----CCCCeEEE---------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVI--------- 677 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~~--------- 677 (1623)
...|+++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|. +.+
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-I~~~g~~i~~~~ 92 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGK-ITLDGEDIYDPR 92 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE-EEECCEECcccc
Confidence 457999999999963 5799999999999999999999999999999999999975 7773 322
Q ss_pred ------cCcEEEEccCcccCcccHHHHHhcCCC---C--C----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccC
Q 000351 678 ------RGTVAYVPQVSWIFNATVRDNILFGSA---F--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 742 (1623)
Q Consensus 678 ------~~~iay~~Q~~~l~~~Tv~enI~~g~~---~--~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 742 (1623)
+..++|++|++.+++.|++||+.++.. . . .++..++++.+++.+.+. +..+..+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 235999999999988899999987531 1 1 123455566666644322 12345567899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 000351 743 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 743 GGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 821 (1623)
||||||++||||++.+|+++||||||++||+.+.+++.+.+.. ..+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~-l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE-LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999875544 445789999999999985 58999999999999999
Q ss_pred ChhHHhh
Q 000351 822 TFEDLSN 828 (1623)
Q Consensus 822 ~~~~l~~ 828 (1623)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=315.49 Aligned_cols=166 Identities=28% Similarity=0.583 Sum_probs=148.7
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc------------CcEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------GTVA 682 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~------------~~ia 682 (1623)
++++|++++|+.. ++++++|+||++++||+++|+||||||||||+++|+|+++|++| .+.+. ..++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDLEKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCEEHHHHHHHHHhhEE
Confidence 4789999999742 24799999999999999999999999999999999999999998 44333 3599
Q ss_pred EEccCcccCcccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q 000351 683 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 762 (1623)
Q Consensus 683 y~~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~il 762 (1623)
|++|++++++.|++||+ ..+||||||||++||||++.+|+++
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 3579999999999999999999999
Q ss_pred EEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 000351 763 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821 (1623)
Q Consensus 763 lLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 821 (1623)
||||||++||+.+.+.+++.+... .+++|+|++||+.++++.||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999998866543 4689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.29 Aligned_cols=188 Identities=27% Similarity=0.467 Sum_probs=157.3
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------c
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------R 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------~ 678 (1623)
++++|+++.|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+ +
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ-VRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHHH
Confidence 789999999952 357999999999999999999999999999999999999999984 322 2
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
..++|++|+|.++ ..|++||+.++.. .+ +++..+.++..++.+.++..+ .+||||||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~ 147 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVA 147 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHH
Confidence 3599999999987 5799999987521 22 234556667777765444433 489999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCE
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 816 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 816 (1623)
||||++.+|+++||||||++||+.+..++.+.+.....+|+|+|++||+++++.. ||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999988665543458999999999999875 89999999984
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=335.91 Aligned_cols=200 Identities=24% Similarity=0.384 Sum_probs=165.3
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------cC
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------RG 679 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------~~ 679 (1623)
++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|.++|++|. +.+ +.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA-VLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE-EEECCEEcccccCCHHHHHh
Confidence 789999999963 57999999999999999999999999999999999999999984 322 13
Q ss_pred cEEEEccCcc--cCcccHHHHHhcCC---CCCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVSW--IFNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~~--l~~~Tv~enI~~g~---~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.|+|++|++. ++..|+.+|+.++. ..+.+ +..++++..++.+..+ ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVA 146 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHH
Confidence 5999999986 46779999998741 12222 2344555566643322 234689999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
|||||+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998866554445899999999999985 5899999999999999999887654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=310.88 Aligned_cols=210 Identities=26% Similarity=0.455 Sum_probs=173.2
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------- 678 (1623)
+.++++|++..|.. ..+|++|||++++||+++|+|+||+||||||++|+|..++.+| .+...
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G-~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG-RIIFDGEDITGLPPHERAR 77 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEECCeecCCCCHHHHHh
Confidence 35899999999974 5799999999999999999999999999999999999999988 44432
Q ss_pred CcEEEEccCcccC-cccHHHHHhcCCCCCHH-HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHh
Q 000351 679 GTVAYVPQVSWIF-NATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 756 (1623)
Q Consensus 679 ~~iay~~Q~~~l~-~~Tv~enI~~g~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~ 756 (1623)
..|+||||.-.+| +.||+||+..|...... ...+ ..+++-.+.+|.- ......++.+|||||||-+|+||||.
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHh
Confidence 3599999999998 78999999987432211 1111 1133445555542 22456788999999999999999999
Q ss_pred cCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchh-hhcCEEEEEeCCEEEEecChhHHhhcCh
Q 000351 757 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNGE 831 (1623)
Q Consensus 757 ~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 831 (1623)
++|++++|||||.+|-|...+.||+.+.....+ |.||++|-++..+. +.+||.++|++|+|+.+|+.++|.++..
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999866554433 67999999999984 5789999999999999999999987644
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=333.33 Aligned_cols=201 Identities=21% Similarity=0.387 Sum_probs=164.7
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------- 678 (1623)
..++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|. +.+.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~ 79 (255)
T PRK11300 4 PLLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT-ILLRGQHIEGLPGHQIAR 79 (255)
T ss_pred ceEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcce-EEECCEECCCCCHHHHHh
Confidence 3699999999996 357999999999999999999999999999999999999999993 3322
Q ss_pred CcEEEEccCcccCc-ccHHHHHhcCCC-----------C-----C---H---HHHHHHHHHhCchhHHhcCCCCCccccc
Q 000351 679 GTVAYVPQVSWIFN-ATVRDNILFGSA-----------F-----E---P---ARYEKAIDVTSLQHDLDLLPGGDVTEIG 735 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~-~Tv~enI~~g~~-----------~-----~---~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig 735 (1623)
..++|++|++.++. .|++||+.++.. + + . ++..+.++..++.+ ...
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~ 148 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HAN 148 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhh
Confidence 24899999999985 599999987521 0 0 0 12222333333332 234
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhh-cCEEEEEe
Q 000351 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVH 813 (1623)
Q Consensus 736 ~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~ 813 (1623)
....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++++.. ||++++|+
T Consensus 149 ~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 149 RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN 228 (255)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 556789999999999999999999999999999999999999998866554333 8999999999999864 89999999
Q ss_pred CCEEEEecChhHHhh
Q 000351 814 EGMVKEEGTFEDLSN 828 (1623)
Q Consensus 814 ~G~i~~~g~~~~l~~ 828 (1623)
+|++++.|+.+++.+
T Consensus 229 ~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 229 QGTPLANGTPEEIRN 243 (255)
T ss_pred CCeEEecCCHHHHhh
Confidence 999999999888754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=334.52 Aligned_cols=204 Identities=26% Similarity=0.377 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------C
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------G 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~ 679 (1623)
+.++++|+++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+. .
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHh
Confidence 469999999999742 34699999999999999999999999999999999999999998 44332 2
Q ss_pred cEEEEccCcc--cCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~~--l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.++|++|+|+ +++.|+++|+.++.. ... ++..++++..++.+..+ ....+||||||||++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 152 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVA 152 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHH
Confidence 5899999995 457799999987632 222 23334455555543332 344689999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999886654333 38999999999999888999999999999999999988654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=333.38 Aligned_cols=205 Identities=25% Similarity=0.348 Sum_probs=167.6
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCC---ccC--CCCCeEEE----------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE---LPP--VSDASAVI---------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~---~~~--~~g~~~~~---------- 677 (1623)
+.++++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|. .+| ++| .+.+
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~ 77 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG-EIRIDGRNIYDKGV 77 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCce-EEEECCEecccccc
Confidence 46899999999963 5699999999999999999999999999999999996 454 367 3221
Q ss_pred -----cCcEEEEccCcccCcccHHHHHhcCCC----CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 678 -----RGTVAYVPQVSWIFNATVRDNILFGSA----FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 678 -----~~~iay~~Q~~~l~~~Tv~enI~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
++.|+|++|++.+++.|++||+.++.. .+ +++..++++.+++.+.+. +.....+.+||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 150 (250)
T PRK14245 78 QVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGG 150 (250)
T ss_pred cHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHH
Confidence 235999999999988899999986521 11 123455566666644332 1234566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
||||++||||++.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999998866543 46899999999999875 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++.++
T Consensus 230 ~~~~~~ 235 (250)
T PRK14245 230 KKIFTN 235 (250)
T ss_pred HHHhcC
Confidence 998653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=329.11 Aligned_cols=198 Identities=28% Similarity=0.493 Sum_probs=161.9
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------cCc
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------RGT 680 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~~~ 680 (1623)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|. +.+ +..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-IRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHHhC
Confidence 468999999963 57999999999999999999999999999999999999999983 332 235
Q ss_pred EEEEccCcccCc-ccHHHHHhcCCC-C--C-HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHH
Q 000351 681 VAYVPQVSWIFN-ATVRDNILFGSA-F--E-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 681 iay~~Q~~~l~~-~Tv~enI~~g~~-~--~-~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal 755 (1623)
++|++|++.++. .|++||+.++.. . + .+...++++..+. + .........+||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l-------~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---L-------KEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---H-------HHHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999999886 599999987532 1 1 1223333333321 1 1123345568999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 826 (1623)
+.+|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++++.. ||+|+++++|++++.|+.+++
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999886655433 38999999999999875 899999999999999998886
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=332.18 Aligned_cols=208 Identities=22% Similarity=0.285 Sum_probs=170.0
Q ss_pred cEEEEEEEEEeCCC------------------CCCcccceeeEeCCCCEEEEecCCCCChhhHHHHhhccccCCCcEEEE
Q 000351 1238 SIKFEDVVLRYRPE------------------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~------------------~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~I 1299 (1623)
.|+++||++.|+.. .+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47888888877541 235899999999999999999999999999999999999999999999
Q ss_pred CCEecCCCChHHhhhceEEEcCCCcccc-ccHHhhcCCC---CCCCHHHHHHHHHHhcHHHHHHhccCCcchhhhcCCCC
Q 000351 1300 DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375 (1623)
Q Consensus 1300 dG~di~~i~~~~lR~~i~~vpQdp~Lf~-gTIr~NLd~~---~~~sd~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~~ 1375 (1623)
||. +++++|++.+++ .|+++|+... ...+.++..+..+ +.++. .+++..+......
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~--~~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP-----KIIEF--SELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH--cCCchhhcCCccc
Confidence 984 456788887664 4999998631 1233444332211 11111 2444555556678
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhc-cCEEEEEeCceEee
Q 000351 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1376 LSgGQrQrLaLARALL~~p~ILlLDEpTS~LD~~Te~~Iq~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1453 (1623)
||||||||++||||++++|+||||||||++||+.+.+.+.+.|.+.. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 47899999999999876 99999999999999
Q ss_pred ecChhHHhhcCC
Q 000351 1454 YDTPEELLSNEG 1465 (1623)
Q Consensus 1454 ~Gtp~eLl~~~~ 1465 (1623)
.|++++++++..
T Consensus 224 ~g~~~~~~~~~~ 235 (264)
T PRK13546 224 YGELDDVLPKYE 235 (264)
T ss_pred eCCHHHHHHHhH
Confidence 999999987543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=332.70 Aligned_cols=200 Identities=27% Similarity=0.441 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
.++++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++| .+.+. ..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG-TVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-EEEECCEEhHHCCHHHHhhh
Confidence 4789999999963 5799999999999999999999999999999999999999998 44332 24
Q ss_pred EEEEccCcccCc-ccHHHHHhcCCC-----C------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHH
Q 000351 681 VAYVPQVSWIFN-ATVRDNILFGSA-----F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 681 iay~~Q~~~l~~-~Tv~enI~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
++|++|++.++. .|+.||+.++.. + +.++..++++..++.+..+. ....||||||||
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr 146 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQR 146 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHH
Confidence 999999998875 499999987521 1 12344555666666544333 346899999999
Q ss_pred HHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 827 (1623)
Q Consensus 749 vaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 827 (1623)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||++++|++|+++..|+++++.
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999999999999999999999999999998866544345899999999999876 58999999999999999998876
Q ss_pred h
Q 000351 828 N 828 (1623)
Q Consensus 828 ~ 828 (1623)
.
T Consensus 227 ~ 227 (255)
T PRK11231 227 T 227 (255)
T ss_pred C
Confidence 4
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=329.95 Aligned_cols=199 Identities=28% Similarity=0.434 Sum_probs=163.6
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 677 (1623)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|..+|++|. +.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT-LNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecccccccchhhH
Confidence 4789999999963 57999999999999999999999999999999999999999983 332
Q ss_pred ---cCcEEEEccCcccCc-ccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHH
Q 000351 678 ---RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 678 ---~~~iay~~Q~~~l~~-~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
+..|+|++|++.++. .|++|||.++. .... ++..+.++..++...++ ....+|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~ 146 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQ 146 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHH
Confidence 235999999999875 69999997421 1111 22344455555543333 3345899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 746 kqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 824 (1623)
|||++||||++.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+.+++.. ||++++|++|+++++|+++
T Consensus 147 ~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999988654433358999999999999864 8999999999999999988
Q ss_pred HHh
Q 000351 825 DLS 827 (1623)
Q Consensus 825 ~l~ 827 (1623)
++.
T Consensus 227 ~~~ 229 (242)
T PRK11124 227 CFT 229 (242)
T ss_pred Hhc
Confidence 764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=333.54 Aligned_cols=205 Identities=26% Similarity=0.385 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc--C---CCCCeEEE----------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--P---VSDASAVI---------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~--~---~~g~~~~~---------- 677 (1623)
+.++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++| .+.+
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G-~i~~~g~~~~~~~~ 86 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG-EMNYNGSNILKGKV 86 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-EEEECCEEcccccc
Confidence 46999999999963 579999999999999999999999999999999999987 3 467 3221
Q ss_pred -----cCcEEEEccCcccCcccHHHHHhcCCC----CCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 678 -----RGTVAYVPQVSWIFNATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 678 -----~~~iay~~Q~~~l~~~Tv~enI~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
+..+||++|++.+++.|++||+.++.. .+++ +..++++..++.+.+. +.....+.+||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~G 159 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGG 159 (259)
T ss_pred CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHH
Confidence 235999999999988899999987532 1222 2333445555543221 1234566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
||||++||||++.+|+++||||||++||+++...+.+.+.. ..+++|+|+|||+++.+. .||+|++|++|+++++|++
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 238 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999875544 445799999999999876 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++.++
T Consensus 239 ~~~~~~ 244 (259)
T PRK14274 239 NKMFSN 244 (259)
T ss_pred HHHhhC
Confidence 988643
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=327.26 Aligned_cols=198 Identities=25% Similarity=0.375 Sum_probs=162.5
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------C
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------G 679 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~ 679 (1623)
+.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+. .
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEcCcCCHHHHHh
Confidence 4699999999996 35799999999999999999999999999999999999999999 43322 3
Q ss_pred cEEEEccCcccCcccHHHHHhcCCC-----CCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHH
Q 000351 680 TVAYVPQVSWIFNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 680 ~iay~~Q~~~l~~~Tv~enI~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARa 754 (1623)
.++|++|++.+++.|++||+.++.. .++++..+.++..++.+ +.......+|||||||||+||||
T Consensus 82 ~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 82 QVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred ccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHH
Confidence 5999999999998899999986421 12233445555555532 12344567899999999999999
Q ss_pred HhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhhcCEEEEEe-CCEEEEecChh
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVH-EGMVKEEGTFE 824 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 824 (1623)
++++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++..||++++|+ ++..+++|+|+
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999876554333 4899999999999998899999995 56667778764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=330.37 Aligned_cols=199 Identities=20% Similarity=0.358 Sum_probs=164.3
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc--------------C
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------G 679 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~--------------~ 679 (1623)
.++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|. +.+. .
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~ 77 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS-VLFGGTDLTGLPEHQIARA 77 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EEECCeecCCCCHHHHHhc
Confidence 4889999999963 57999999999999999999999999999999999999999983 3321 2
Q ss_pred cEEEEccCcccCc-ccHHHHHhcCCCC---------------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccCh
Q 000351 680 TVAYVPQVSWIFN-ATVRDNILFGSAF---------------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 743 (1623)
Q Consensus 680 ~iay~~Q~~~l~~-~Tv~enI~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 743 (1623)
.++|++|++.++. .|++||+.++... ++++..+.++..++.+ .......+|||
T Consensus 78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 146 (242)
T TIGR03411 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSH 146 (242)
T ss_pred CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCH
Confidence 4999999999886 5999999875321 1122333444444432 23345568999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecC
Q 000351 744 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 744 GQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 822 (1623)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++++. .||+|++|++|+++++|+
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCC
Confidence 999999999999999999999999999999999999885544 345799999999999987 489999999999999999
Q ss_pred hhHHhh
Q 000351 823 FEDLSN 828 (1623)
Q Consensus 823 ~~~l~~ 828 (1623)
++++..
T Consensus 226 ~~~~~~ 231 (242)
T TIGR03411 226 LDQVQA 231 (242)
T ss_pred HHHHhc
Confidence 988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=323.74 Aligned_cols=190 Identities=27% Similarity=0.472 Sum_probs=158.6
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-----------CcEEE
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVAY 683 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-----------~~iay 683 (1623)
|+++|++++|++ +. .|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+. ..++|
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG-RVLINGVDVTAAPPADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCcCCHhHccEEE
Confidence 478999999963 22 399999999999999999999999999999999999998 44332 25999
Q ss_pred EccCcccCc-ccHHHHHhcCCC--C-----CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHH
Q 000351 684 VPQVSWIFN-ATVRDNILFGSA--F-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 684 ~~Q~~~l~~-~Tv~enI~~g~~--~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal 755 (1623)
++|++.++. .|++||+.++.. . ++++..++++.+++.+..+..+ .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999885 599999987532 1 1335566777777766555544 47999999999999999
Q ss_pred hcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 821 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 821 (1623)
+.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999886654333 48999999999999865 8999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=331.13 Aligned_cols=200 Identities=30% Similarity=0.431 Sum_probs=167.1
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------Cc
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ 680 (1623)
.++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++| .+.+. ..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG-EVRLNGRPLADWSPAELARR 77 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcccCCHHHhhhh
Confidence 4789999999963 5799999999999999999999999999999999999999998 43322 35
Q ss_pred EEEEccCccc-CcccHHHHHhcCCC-C------CHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHH
Q 000351 681 VAYVPQVSWI-FNATVRDNILFGSA-F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 iay~~Q~~~l-~~~Tv~enI~~g~~-~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLA 752 (1623)
++|++|++.+ ++.|++||+.++.. . .+++..+.++..++.+..+. ...+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la 146 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLA 146 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHH
Confidence 8999999987 57899999987532 1 12334556666666543333 3468999999999999
Q ss_pred HHHh------cCCCEEEEeCcccCcCHHHHHHHHHHHHhhh-cCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 000351 753 RAVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 824 (1623)
Q Consensus 753 Ral~------~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 824 (1623)
||++ .+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 9999 5999999999999999999999987665443 35899999999999886 58999999999999999998
Q ss_pred HHhh
Q 000351 825 DLSN 828 (1623)
Q Consensus 825 ~l~~ 828 (1623)
++..
T Consensus 227 ~~~~ 230 (258)
T PRK13548 227 EVLT 230 (258)
T ss_pred HHhC
Confidence 8764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=334.06 Aligned_cols=206 Identities=23% Similarity=0.360 Sum_probs=167.4
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc-----CCCCCeEEE---------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAVI--------- 677 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~~--------- 677 (1623)
...++++|+++.|+. +++|+|+||+|++|++++|+||||||||||+++|+|.++ |++|. +.+
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~-v~~~g~~i~~~~ 86 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR-VLFDGTDLYDPR 86 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEccccc
Confidence 357999999999963 569999999999999999999999999999999999987 57773 322
Q ss_pred ------cCcEEEEccCcccCcccHHHHHhcCCC---CC---HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHH
Q 000351 678 ------RGTVAYVPQVSWIFNATVRDNILFGSA---FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 678 ------~~~iay~~Q~~~l~~~Tv~enI~~g~~---~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
+..|+|++|++.++..|++||+.++.. ++ +++..++++.+++...++ +.......+|||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 159 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQ 159 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHH
Confidence 135999999999987899999987642 11 233344555555432221 12345567899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeC----------
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHE---------- 814 (1623)
Q Consensus 746 kqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~---------- 814 (1623)
|||++||||++.+|+++||||||++||+.+.+++.+.+.. ..+++|+|++||+++++. .||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE-LKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccc
Confidence 9999999999999999999999999999999999875543 445789999999999875 5899999996
Q ss_pred -CEEEEecChhHHhhc
Q 000351 815 -GMVKEEGTFEDLSNN 829 (1623)
Q Consensus 815 -G~i~~~g~~~~l~~~ 829 (1623)
|++++.|+.+++.+.
T Consensus 239 ~g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 239 VGYLVEFNETKKIFNS 254 (269)
T ss_pred cceEEEeCCHHHHHhC
Confidence 678999999988653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=334.04 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=167.8
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccC-----CCCCeEEE---------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVI--------- 677 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~~--------- 677 (1623)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|..+| ++|. +.+
T Consensus 10 ~~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~i~~~~ 85 (258)
T PRK14268 10 QPQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK-VSIEGEDIYEPD 85 (258)
T ss_pred ceeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceE-EEECCEEccccc
Confidence 35699999999996 35799999999999999999999999999999999999875 6773 221
Q ss_pred ------cCcEEEEccCcccCcccHHHHHhcCC---CCCHH----HHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 678 ------RGTVAYVPQVSWIFNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 678 ------~~~iay~~Q~~~l~~~Tv~enI~~g~---~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
+..++|++|++.+++.|++||+.++. ..+.+ +..++++.+++..++. ........+||||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 158 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGG 158 (258)
T ss_pred chHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHH
Confidence 23599999999998899999998752 12222 2344555555532221 1234556789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
||||++||||++.+|+++||||||++||+.+.+++.+.+.. ..+++|+|++||+++++. .||+|++|++|++++.|++
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 237 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN-LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH-HhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999875544 345799999999999885 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++..+
T Consensus 238 ~~~~~~ 243 (258)
T PRK14268 238 RQIFHN 243 (258)
T ss_pred HHHhcC
Confidence 988643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=325.91 Aligned_cols=189 Identities=26% Similarity=0.432 Sum_probs=157.0
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE----------------c
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------R 678 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------~ 678 (1623)
++++|+++.|+. .+++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+ +
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT-IRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcccCCHHHHHHHH
Confidence 468999999963 257999999999999999999999999999999999999999983 322 1
Q ss_pred CcEEEEccCcccCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 679 GTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~-~Tv~enI~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
..++|++|++.++. .|++||+.++.. .+ +++..+.++.+++.+.++..+ .+||||||||++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 146 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVA 146 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHH
Confidence 25999999998875 699999987521 12 134455666677765444333 489999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 817 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 817 (1623)
||||++.+|+++||||||++||+++.+.+.+.+.....+|+|+|++||+.+.+.. ||+|++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988665543458999999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=332.23 Aligned_cols=205 Identities=22% Similarity=0.386 Sum_probs=165.7
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCc--cC---CCCCeEEE----------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PP---VSDASAVI---------- 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~--~~---~~g~~~~~---------- 677 (1623)
+.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|.. +| ++|. +.+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~-i~~~g~~~~~~~~ 79 (252)
T PRK14239 4 PILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGS-IVYNGHNIYSPRT 79 (252)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccce-EEECCEECcCccc
Confidence 36899999999963 57999999999999999999999999999999999985 36 3673 222
Q ss_pred -----cCcEEEEccCcccCcccHHHHHhcCCC---C-CH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChH
Q 000351 678 -----RGTVAYVPQVSWIFNATVRDNILFGSA---F-EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744 (1623)
Q Consensus 678 -----~~~iay~~Q~~~l~~~Tv~enI~~g~~---~-~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 744 (1623)
+..++|++|++.+++.|++||+.++.. . ++ ++...+++.+++.+.+. +..+....+||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGG 152 (252)
T ss_pred chHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHH
Confidence 235999999999999999999986521 1 11 22333455555433222 1234566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecCh
Q 000351 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 745 QkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 823 (1623)
||||++||||++.+|+++||||||++||+.+.+++++.+.. ..+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH-HhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999875544 345789999999999875 5899999999999999999
Q ss_pred hHHhhc
Q 000351 824 EDLSNN 829 (1623)
Q Consensus 824 ~~l~~~ 829 (1623)
+++.+.
T Consensus 232 ~~~~~~ 237 (252)
T PRK14239 232 KQMFMN 237 (252)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=335.64 Aligned_cols=201 Identities=26% Similarity=0.441 Sum_probs=167.0
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE---------------cC
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------RG 679 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------~~ 679 (1623)
++++|+++.|+. .+++++|+||+|++||+++|+||||||||||+++|+|.++|++|. +.+ +.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE-VLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEECccccchHHHHHh
Confidence 789999999963 356999999999999999999999999999999999999999883 322 23
Q ss_pred cEEEEccCc--ccCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~--~l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.|+|++|+| .+++.|++|||.++.. ... ++..++++.+++.+..+. ...+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVA 147 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 599999997 5678899999987531 221 234455666666433222 34589999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 829 (1623)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++...
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998866544335899999999999986 5999999999999999999988654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=329.10 Aligned_cols=200 Identities=22% Similarity=0.386 Sum_probs=164.2
Q ss_pred cEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------cC
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------RG 679 (1623)
Q Consensus 614 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~~ 679 (1623)
.++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|. +.+ +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN-IIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHHh
Confidence 5889999999963 57999999999999999999999999999999999999999983 332 23
Q ss_pred cEEEEccCcccCc-ccHHHHHhcCCC----CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHH
Q 000351 680 TVAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 750 (1623)
Q Consensus 680 ~iay~~Q~~~l~~-~Tv~enI~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRva 750 (1623)
.++|++|++.++. .|++||+.++.. .+. .+..+.++..++.+ .......+||||||||++
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 147 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVE 147 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHH
Confidence 5999999998875 699999987532 122 12333344444332 234455789999999999
Q ss_pred HHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 751 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 751 LARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
||||++.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999998755443345899999999998775 589999999999999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=332.19 Aligned_cols=200 Identities=26% Similarity=0.390 Sum_probs=165.8
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE-----------------
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------- 677 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------- 677 (1623)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|. +.+
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQ-IQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccccccc
Confidence 478999999963 57999999999999999999999999999999999999999883 221
Q ss_pred ---------cCcEEEEccCcccC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCC
Q 000351 678 ---------RGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 739 (1623)
Q Consensus 678 ---------~~~iay~~Q~~~l~-~~Tv~enI~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~ 739 (1623)
+..++|++|++.++ ..|++||+.++. ..+. ++..+.++..++.+.++ ....
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~ 145 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPA 145 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChh
Confidence 23599999999887 589999998742 1121 23445555555544333 3446
Q ss_pred ccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCEE
Q 000351 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMV 817 (1623)
Q Consensus 740 ~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i 817 (1623)
+||||||||++||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999876654433 3899999999999985 5899999999999
Q ss_pred EEecChhHHhhc
Q 000351 818 KEEGTFEDLSNN 829 (1623)
Q Consensus 818 ~~~g~~~~l~~~ 829 (1623)
++.|+++++.+.
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T TIGR03005 226 VEQGKPDEIFRQ 237 (252)
T ss_pred EEeCCHHHHhcC
Confidence 999999888644
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=333.26 Aligned_cols=206 Identities=20% Similarity=0.322 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCcc-----CCCCCeEEE---------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAVI--------- 677 (1623)
Q Consensus 612 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~~--------- 677 (1623)
...++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|. +.+
T Consensus 18 ~~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~ 93 (267)
T PRK14237 18 EIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ-ILYRGIDINRKE 93 (267)
T ss_pred CeEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE-EEECCEEccccc
Confidence 35799999999995 3679999999999999999999999999999999999986 46773 321
Q ss_pred ------cCcEEEEccCcccCcccHHHHHhcCCC---C-CH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccCh
Q 000351 678 ------RGTVAYVPQVSWIFNATVRDNILFGSA---F-EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 743 (1623)
Q Consensus 678 ------~~~iay~~Q~~~l~~~Tv~enI~~g~~---~-~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 743 (1623)
+..|+|++|++.++..|++|||.++.. . ++ ++..++++.+++.+++. +..+..+.+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCH
Confidence 235999999999988899999987521 1 21 33445566666654332 234566789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecC
Q 000351 744 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 744 GQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 822 (1623)
|||||++||||++.+|+++||||||++||+.+.+++.+.+.. ..+++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE-LKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999876554 345799999999999875 589999999999999999
Q ss_pred hhHHhhc
Q 000351 823 FEDLSNN 829 (1623)
Q Consensus 823 ~~~l~~~ 829 (1623)
.+++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14237 246 TRNIFTN 252 (267)
T ss_pred HHHHhcC
Confidence 9988643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=325.36 Aligned_cols=188 Identities=32% Similarity=0.536 Sum_probs=154.3
Q ss_pred EEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEc-------------CcEE
Q 000351 616 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTVA 682 (1623)
Q Consensus 616 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~ia 682 (1623)
+++|+++.|++. .+++|+|+||++++|++++|+||||||||||+++|+|.++|++|. +.+. ..|+
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVG 78 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEcccCCHHHHHhhce
Confidence 368999999632 257999999999999999999999999999999999999999984 3322 3589
Q ss_pred EEccCcc--cCcccHHHHHhcCCC---CCH----HHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHH
Q 000351 683 YVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 683 y~~Q~~~--l~~~Tv~enI~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLAR 753 (1623)
|++|++. +++.|++||+.++.. .+. ++..+.++..++.+.++. ...+|||||||||+|||
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~lar 147 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAG 147 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999984 568899999987521 222 234455666666544433 34689999999999999
Q ss_pred HHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhh-cCEEEEEeCCE
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 816 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 816 (1623)
|++.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999998665544458999999999999876 89999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=327.36 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=163.4
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEE--------------c
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------R 678 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------------~ 678 (1623)
..++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|. +.+ +
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 4 VMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR-IVFDGKDITDWQTAKIMR 79 (237)
T ss_pred cEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce-EEECCEecCCCCHHHHHH
Confidence 35899999999963 57999999999999999999999999999999999999999984 322 2
Q ss_pred CcEEEEccCcccCc-ccHHHHHhcCCC-CCHHHH----HHHHHHh-CchhHHhcCCCCCcccccCCCCccChHHHHHHHH
Q 000351 679 GTVAYVPQVSWIFN-ATVRDNILFGSA-FEPARY----EKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~-~Tv~enI~~g~~-~~~~~~----~~~~~~~-~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaL 751 (1623)
..++|++|++.++. .||+||+.++.. .+.+.. .++++.. ++.+ .......+||||||||++|
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 148 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAI 148 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHH
Confidence 35999999998886 699999987532 122222 2222222 1111 1223456899999999999
Q ss_pred HHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 000351 752 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 752 ARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 828 (1623)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++. .||++++|++|++++.|+++++..
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999998866554445899999999999765 589999999999999999998864
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=332.06 Aligned_cols=199 Identities=27% Similarity=0.445 Sum_probs=163.8
Q ss_pred CcEEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCC---CCeEEE------------
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---DASAVI------------ 677 (1623)
Q Consensus 613 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~---g~~~~~------------ 677 (1623)
+.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|+. | .+.+
T Consensus 3 ~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G-~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 3 TIIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTVQREGRLA 78 (262)
T ss_pred cEEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCce-EEEECCEecccccccc
Confidence 3689999999996 3579999999999999999999999999999999999998864 5 3221
Q ss_pred ------cCcEEEEccCcccCc-ccHHHHHhcCCC------------CC---HHHHHHHHHHhCchhHHhcCCCCCccccc
Q 000351 678 ------RGTVAYVPQVSWIFN-ATVRDNILFGSA------------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIG 735 (1623)
Q Consensus 678 ------~~~iay~~Q~~~l~~-~Tv~enI~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig 735 (1623)
+..++|++|++.++. .|++||+.++.. .. .++..++++..++.+.++
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------- 147 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH----------- 147 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------
Confidence 125899999998875 699999987531 01 123445555555543333
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcCHHHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-hcCEEEEEe
Q 000351 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVH 813 (1623)
Q Consensus 736 ~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~ 813 (1623)
....+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+. .||+|++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~ 227 (262)
T PRK09984 148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227 (262)
T ss_pred CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34468999999999999999999999999999999999999999886655433 4899999999999865 589999999
Q ss_pred CCEEEEecChhHH
Q 000351 814 EGMVKEEGTFEDL 826 (1623)
Q Consensus 814 ~G~i~~~g~~~~l 826 (1623)
+|++++.|+++++
T Consensus 228 ~g~i~~~g~~~~~ 240 (262)
T PRK09984 228 QGHVFYDGSSQQF 240 (262)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999999986
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=310.11 Aligned_cols=161 Identities=24% Similarity=0.372 Sum_probs=144.3
Q ss_pred EEEEeeEEEcCCCCCCCccccceeEecCCcEEEEEcCCCCChhHHHHHHcCCccCCCCCeEEEcC--cEEEEccCcccCc
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVPQVSWIFN 692 (1623)
Q Consensus 615 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~--~iay~~Q~~~l~~ 692 (1623)
|+++|++++|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++| .+.+.+ .++|++|++.+++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~i~~~~q~~~~~~ 77 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG-RIGMPEGEDLLFLPQRPYLPL 77 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCCceEEEECCCCcccc
Confidence 468999999963 35799999999999999999999999999999999999999999 555544 7999999999989
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCchhHHhcCCCCCcccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCcccCcC
Q 000351 693 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772 (1623)
Q Consensus 693 ~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRvaLARal~~~~~illLDep~s~LD 772 (1623)
.|++||+.++ ....||||||||++||||++++|+++||||||++||
T Consensus 78 ~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD 123 (166)
T cd03223 78 GTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123 (166)
T ss_pred ccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccC
Confidence 9999999864 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000351 773 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 815 (1623)
Q Consensus 773 ~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 815 (1623)
+++.+++.+.+.. . ++|+|++||+.+....||++++|++|
T Consensus 124 ~~~~~~l~~~l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 124 EESEDRLYQLLKE-L--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHH-h--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999875543 3 68999999999988889999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1623 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-59 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-12 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-41 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-41 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-04 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-41 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-40 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-40 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 7e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-40 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-40 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-39 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-39 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 8e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-39 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-38 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-38 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 7e-38 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-37 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-37 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-36 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-34 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-33 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-33 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-30 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-30 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-32 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-32 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-29 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-31 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-30 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-30 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-30 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-29 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-29 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-29 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-29 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-28 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-28 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-27 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-22 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-21 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-20 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-12 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 8e-12 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-11 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 7e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 6e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-09 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-08 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 6e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 3e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 4e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 6e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1623 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-161 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-32 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-135 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-70 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-46 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-126 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-34 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-125 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-36 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-122 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 6e-37 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-86 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-51 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-86 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-56 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-85 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-57 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-76 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-45 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-74 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 7e-56 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-74 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 4e-37 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 9e-74 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-39 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-71 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-35 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-69 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-37 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-69 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-37 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-57 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-35 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-32 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-22 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 5e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-30 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-23 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-29 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-18 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 9e-20 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-24 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-22 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-23 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-22 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-22 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-22 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-16 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 7e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-18 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-16 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-15 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-09 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 5e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 6e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 7e-12 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 6e-14 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-11 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 8e-08 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 8e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-11 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-04 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 493 bits (1271), Expect = e-161
Identities = 95/348 (27%), Positives = 182/348 (52%), Gaps = 9/348 (2%)
Query: 1223 VIESN--RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 1280
+IE++ + WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1281 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 1340
++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP + H
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1341 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400
SD ++W+ + L+ I + LD + + G S G +QL+ L+R++L ++KIL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1401 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1460
E +A +D T +I++T+++ F CT+++ R+ +++CD+ L+++ +V +YD+ EL
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1461 LSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQ 1520
F + N ++ A ++++ E + Q+ WL
Sbjct: 241 YHYPADRFVAGFIGSPKMNFLPVKVT---ATAIDQVQVELPMPNRQQVWLPVESRDVQVG 297
Query: 1521 YALAVSLTSSH---NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHD 1565
+++ + H +D+ + +E + ++++ + + + +
Sbjct: 298 ANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQN 345
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 4e-32
Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 23/296 (7%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
+++++ + L NI+ I G V ++G TG GK++L+SA L + +
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR----LLNT 73
Query: 674 SAVI---------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 718
I R +PQ +IF+ T R N+ +A K D
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVG 133
Query: 719 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
L+ ++ PG + + G +S G KQ + +AR+V S + + + D+P + LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 779 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT-FEDLSNNGELFQKLM 837
+ R ++ + T +L ++ + + D+ +++ E V++ + E + F
Sbjct: 194 I-RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 838 ENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 893
+ KM + + P N LP E S + S+ I+ E
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVE-SRDVQVGANMSLGIRPE 307
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 451 bits (1161), Expect = e-135
Identities = 240/1200 (20%), Positives = 469/1200 (39%), Gaps = 117/1200 (9%)
Query: 348 FVGVVLGVLCEAQYFQNVM------RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKIT 401
+ G+ GVL Y Q R ++R A+ + + + G++
Sbjct: 114 YTGIGAGVLI-VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG-WFDVHD---VGELN 168
Query: 402 NLMTTDAEQLQQ--------VCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 453
+T D ++ + QA+ T + II + +L + L + +L
Sbjct: 169 TRLTDDVSKINEGIGDKIGMFFQAMATFFGG---FIIGFTRGW-KLTLVILAISPVLGLS 224
Query: 454 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 513
+ T + L K + E+LAA+ V + + + N +
Sbjct: 225 A---GIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 514 SWFRKAQFLAACNSFILNSIPVLVTVVSF--GMFTLLGGDLTPARAFTSLSLFAVLRFPL 571
K A + + ++F G ++ + + + T + F +
Sbjct: 282 RLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSV 341
Query: 572 FMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP------AISIRNGYFSWD 625
I NA + + + + + I + SG + +N +FS+
Sbjct: 342 GQASPNIEAFANARGAAYEVFKIIDNKPSI---DSFSKSGHKPDNIQGNLEFKNIHFSYP 398
Query: 626 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV---- 676
S+ E L +NL + G VA+VG +G GK++ + M P+ D +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 677 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV--TSLQHD-LDLLPGGD 730
+R + V Q +F T+ +NI +G E ++ + +D + LP
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAENIRYGR--EDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 731 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 790
T +GERG +SGGQKQR+++ARA+ N + + D+ SALD V + G
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA-LDKAREG 575
Query: 791 KTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF------QKLMENAG 841
+T +++ H LS V D I G++ E+G ++L ++ Q
Sbjct: 576 RTTIVIA---HRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIE 632
Query: 842 KMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVS 901
E + K++ + +D + ++ + +++ ++ K + + + S
Sbjct: 633 LGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPAS 692
Query: 902 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS------YWTDQSSLKTHGPLF 955
F + K ++ + C + L+ + S S +
Sbjct: 693 FWRI--LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNL 750
Query: 956 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRI 1013
++ ++ +L + + + KRL + S+LR + +F N G +
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
Query: 1014 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLL 1066
R A D V + + Q ++ I+S + W AI+P++ +
Sbjct: 811 TTRLANDA----AQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAI 866
Query: 1067 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKN 1126
+ S +K + S A EA+ T+ + + + +S+
Sbjct: 867 AGVVEMKMLSGQ-ALKDKKELEGSGKIAT--EAIENFRTVVSLTREQKFETMYAQSLQIP 923
Query: 1127 IRYTLVNMGANRWLAIRLEIVGGLMIWLTA-TFAV----VQNGSAENQEAFASTMGLLLS 1181
R + I +M + A F V + ++
Sbjct: 924 YRNAMK---KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFG 980
Query: 1182 YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS--GSI 1239
A+ + + + A + + + IE E I+S P+ G++
Sbjct: 981 -AMAVGQVSS----FAPDYAKATVSASHIIRIIEKTPE----IDSYSTQGLKPNMLEGNV 1031
Query: 1240 KFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
+F VV Y RP +P VL GLS + + +VG +G GKS+++ L R + G +
Sbjct: 1032 QFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 1298 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHL 1354
+DG +I + + LR LGI+ Q P+LF ++ N+ D S ++ A + A++
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
I + +V + G S GQ+Q ++++RAL+R+ IL+LDEAT+A+D ++ ++
Sbjct: 1151 HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210
Query: 1415 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
Q+ + + + T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+ +G + MV
Sbjct: 1211 QEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG-IYFSMVSV 1269
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 7e-70
Identities = 143/716 (19%), Positives = 299/716 (41%), Gaps = 70/716 (9%)
Query: 868 VDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAL--------------- 912
++ + + + + K+++ + VS + RY L
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 913 GGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI------YSLLSFG 966
G +++L+ V + + S ++ + + Y+ + G
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAG 120
Query: 967 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 1026
++V + +++ ++ H+I+ + +F + +G + R D+ I+
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 1027 NVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLLFYAAYLYYQSTAR 1079
+ + MF Q ++TF I+ W AI P+L L + S+
Sbjct: 181 GIGDKIGMFF----QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF- 235
Query: 1080 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 1139
K L + ++ A+ E L + T+ A+ + + ++++ R +
Sbjct: 236 TDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRL---GIKKAIT 290
Query: 1140 LAIRLEIVGGLMIWLTATFAV--------VQNGSAENQEAFASTMGLLLSYALNITSLLT 1191
I + G + + A++A+ V + + +L+ A ++
Sbjct: 291 ANISM---GAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG-AFSVGQASP 346
Query: 1192 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRY--R 1249
+ A N+ A V I+ +S P G+++F+++ Y R
Sbjct: 347 NIEAFA----NARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSR 400
Query: 1250 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 1309
E+ +L GL+ + V +VG +G GKS+ + + R+ + G + IDG DI +
Sbjct: 401 KEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 1310 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQ 1368
LR+I+G++ Q PVLF+ T+ N+ E + ++ +A++ A+ D I + D
Sbjct: 460 RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTL 519
Query: 1369 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1428
V E G S GQ+Q ++++RAL+R KIL+LDEAT+A+D ++A++Q + + + T +
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579
Query: 1429 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1488
+IAHRL+T+ + D I D G ++E +EL+ +G + K+V Q + +
Sbjct: 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG-IYFKLVM------TQTAGNEIE 632
Query: 1489 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 1544
G K ++E +D + S + + + S+ H+ ++L ++ +
Sbjct: 633 LGNEACKSKDEIDNLDMSSK---DSGSSLIRRRSTRKSICGPHDQDRKLSTKEALD 685
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 1e-46
Identities = 124/645 (19%), Positives = 249/645 (38%), Gaps = 69/645 (10%)
Query: 255 ITEKDVWKLDTWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLGGRFWWGGFWKIGND 314
I + K + ++ ++ W + LNS+ F G F I N
Sbjct: 659 IRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIING 718
Query: 315 LSQFVGPLLLNQLLQSMQQDGPA----WIGYIYAFSIFVGVVLGVLCEAQYFQNVM--RV 368
Q ++ ++++ GP +++ +F+ + + + Q +
Sbjct: 719 GLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL-LFLILGIISFI-TFFLQGFTFGKA 776
Query: 369 GFRLRSTLVAAVFRKSLR--ITHEARKNFASGKITNLMTTDAEQLQ--------QVCQAL 418
G L L VF+ LR ++ +G +T + DA Q++ + Q +
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNI 836
Query: 419 HTLWSAPFRIIISLVLLYN-ELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDK 477
L + IIISL+ Y +L + L ++ V+ ++S K+ L+ + K
Sbjct: 837 ANLGTG---IIISLI--YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGK 891
Query: 478 RIGLMNEILAAMDAVKCYAWENSFQSK-VQNVRNDELSWFRKAQFLAACNSFILNSIPVL 536
+ E + V E F++ Q+++ + +KA SF ++
Sbjct: 892 ---IATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFT-QAMMYF 947
Query: 537 VTVVSF--GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEF 594
+F G + + +T S + + + A VS +
Sbjct: 948 SYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007
Query: 595 LLAEEKILLPNPPLTSGLP------AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 648
+ +I + T GL + F++ ++ P L ++L++ G +A+
Sbjct: 1008 IEKTPEI---DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064
Query: 649 VGGTGEGKTSLISAMLGELPPVS--------DASAV----IRGTVAYVPQVSWIFNATVR 696
VG +G GK++++ + P++ + + +R + V Q +F+ ++
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 697 DNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNISGGQKQRVSMAR 753
+NI +G YE+ + + LP T +G++G +SGGQKQR+++AR
Sbjct: 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184
Query: 754 AVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV---D 807
A+ + + D+ SALD + V D+ G+T +++ H LS + D
Sbjct: 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKARE----GRTCIVIA---HRLSTIQNAD 1237
Query: 808 RIILVHEGMVKEEGTFEDLSNNGELFQKLMEN-AGKMEEYVEEKE 851
I+++ G VKE GT + L ++ ++ AG YV
Sbjct: 1238 LIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRSYVHHHH 1282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 394 bits (1013), Expect = e-126
Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 584 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIP 641
V ++ + F L + S + FS S P L +IN I
Sbjct: 3 TEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 642 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF 701
G L+A+ G TG GKTSL+ ++GEL P G +++ Q SWI T+++NI+
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 702 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S+ARAVY ++D+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 762 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821
++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+++HEG G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 822 TFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN 858
TF +L N F + +++ E+ + +
Sbjct: 241 TFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTET 277
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-34
Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 24/278 (8%)
Query: 1206 AVERVGNYIELPSEAPL--VIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 1263
+E V + E ++N S+ F + L PVL ++F I
Sbjct: 6 VMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKI 61
Query: 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 1323
+ + G TGAGK+S+L + +E G+I G I+ Q+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RIS------------FCSQNS 108
Query: 1324 VLFSGTVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382
+ GT++ N + + + ++ L++ I + + + + E G S GQR
Sbjct: 109 WIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166
Query: 1383 LLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1441
+SL+RA+ + + + +LD +DV T + + + + + T +++ ++ + D
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 1442 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1479
+IL+L G Y T EL + FS + + +
Sbjct: 227 KILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFD 263
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 389 bits (1001), Expect = e-125
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
+I++RN F+W +++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-G 60
Query: 674 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
I+G+VAYVPQ +WI N ++R+NILFG E Y I +L DL++LP GD TE
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 734 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGK 791
IGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I +G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 792 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 845
TR+LVT+ + +L QVD II++ G + E G++++L F + +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 59/250 (23%), Positives = 118/250 (47%), Gaps = 21/250 (8%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
SI + + PP L+G++F+IP V +VG+ G GKSS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERAHL 1354
+ I G +A +PQ + + ++R N L F + ++ L
Sbjct: 62 VAIKG-SVA------------YVPQQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACAL 106
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DAL 1413
+ G ++ E G N S GQ+Q +SL+RA+ + I + D+ +AVD +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 1414 IQKTI--REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
+ I + K+ T +++ H ++ + D I+++ G++ E + +ELL+ +F++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEF 225
Query: 1472 VQSTGAANAQ 1481
+++ + +
Sbjct: 226 LRTYASHHHH 235
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 381 bits (982), Expect = e-122
Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
Query: 608 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 667
LT+ + + N W+ + P L +IN I G L+A+ G TG GKTSL+ ++GEL
Sbjct: 2 LTTT--EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
Query: 668 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 727
P G +++ Q SWI T+++NI+FG +++ RY I L+ D+
Sbjct: 59 EPSE-GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 728 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 787
D +GE G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+
Sbjct: 118 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 788 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 837
++ KTR+LVT+++ L + D+I+++HEG GTF +L N F +
Sbjct: 178 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-37
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 18/241 (7%)
Query: 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 1294
++ + E+V + PVL ++F I + + G TGAGK+S+L + +E
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1295 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERA 1352
G+I G I+ Q + GT++ N + F D ++
Sbjct: 63 GKIKHSG-RIS------------FCSQFSWIMPGTIKENII--FGVSYDEYRYRSVIKAC 107
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-D 1411
L++ I + + + + E G S GQR +SL+RA+ + + + +LD +DV T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1412 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1471
+ + + + + T +++ ++ + D+IL+L G Y T EL + + SK+
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 1472 V 1472
+
Sbjct: 228 M 228
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 1e-86
Identities = 125/570 (21%), Positives = 244/570 (42%), Gaps = 36/570 (6%)
Query: 916 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTL--- 972
+ + ++ + + + + Y D + ++ G L
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 973 ------ANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 1026
Y +S + + + + F+ N +G++I+R D+
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 1027 NVAVFVNMFMGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 1085
+ + ++ ++ + ++L A+ Y + R++ R
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY-VFFGRLRKLTRER 192
Query: 1086 SITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGANRWLA 1141
S + V E + G+S ++++ N + + +++T N + +
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 1142 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 1201
+I ++I + A A+ +GS T+G L ++ + L + RL +
Sbjct: 253 TVTDIGPIIVIGVGAYLAI--SGS--------ITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 1202 NSLNAV---ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1258
+ +RV +L E + P G I + V +Y P+L
Sbjct: 303 TLTQSFASMDRV---FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
++ +I + V VG +G GKS+++N + R ++ G+ILIDG +I F LR +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 1319 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375
+ Q +LFS TV+ N+ P +D ++ EA + A+ D I G D +V E G
Sbjct: 420 VQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1435
S GQ+Q LS++R L IL+LDEAT+A+D+ ++++IQ+ + K T LI+AHRL+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 1436 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
TI D+I+++++G ++E T EL++ +G
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAKQG 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 2e-51
Identities = 126/586 (21%), Positives = 231/586 (39%), Gaps = 77/586 (13%)
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLL-----QSMQQDGPAWIGYIYAFSIFVGVVLGV 355
R + I + PLL+ + A I + + + V
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 356 LCEAQYFQNVM------RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAE 409
++ + + ++ + +R L + S R + G++ + + D E
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQ----VGQVISRVINDVE 129
Query: 410 QLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLT 468
Q + L +W III+L +++ + L +F+FP +
Sbjct: 130 QTKDFILTGLMNIWLDCITIIIALSIMF----FLDVKLTLAALFIFPFYILTVYVFFGRL 185
Query: 469 KEGLQRTDKRIGLMN----EILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAA 524
++ + + + + E + + VK +A E++ + L+ K A
Sbjct: 186 RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245
Query: 525 ----CNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQ 580
+ + + P++V G + + G +T + +L PL L T
Sbjct: 246 YSFAAINTVTDIGPIIVIG--VGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 581 VVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP----AISIRNGYFSWDSKAERPTLLNI 636
+ + S+ R+ + + +E + N + I I + F ++ E P L +I
Sbjct: 304 LTQSFASMDRVFQLI--DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDI 360
Query: 637 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVI-------------RG 679
NL I G VA VG +G GK++LI+ L P V+ +I R
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLIN-----LIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 680 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGE 736
+ V Q + +F+ TV++NIL G A E+ ++ + + D LP G TE+GE
Sbjct: 416 QIGLVQQDNILFSDTVKENILLGR--PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473
Query: 737 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTR 793
RGV +SGGQKQR+S+AR +N + I D+ SALD + D + +T
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK----DRTT 529
Query: 794 VLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
++V H LS + D+I+++ G + E GT +L ++ L
Sbjct: 530 LIVA---HRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 8e-86
Identities = 137/600 (22%), Positives = 254/600 (42%), Gaps = 56/600 (9%)
Query: 891 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 949
E+ +FK L Y + GL V I L+ +T +S L D+
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMIS---LLKPLLDEGFGN 58
Query: 950 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 1007
+ + L F + L A+SY L S ++ + + + P+ FF
Sbjct: 59 AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ 118
Query: 1008 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AI 1060
G +++R D ++ + V + S L+ ++ S W +
Sbjct: 119 ESTGGLLSRI---TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNS-WQLSLVLIVV 174
Query: 1061 MPLLLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----K 1110
P++ + KR I+R V + + L G + +Y
Sbjct: 175 APVVAFA---------ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEV 225
Query: 1111 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 1170
R ++ + ++ A+ + + + +++L A+ ++
Sbjct: 226 ERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL-ASVDSIRA------- 277
Query: 1171 AFASTMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESN 1227
T G + L+ + L S+ + A + + ++L +E
Sbjct: 278 --ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGK 332
Query: 1228 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 1287
+G + +DV Y+ + P L +SF+IP V +VGR+G+GKS++ N
Sbjct: 333 YEAE--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390
Query: 1288 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADL 1345
R +++ G I +DG D+ + L +LR+ ++ Q+ LF+ T+ N E++ +
Sbjct: 391 RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450
Query: 1346 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
+A +AH + I GLD + E G + S GQRQ ++++RALLR + +L+LDEAT+A
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 1406 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+D ++ IQ + E K+ T+L+IAHRL+TI D IL++D G ++E +LL+ +G
Sbjct: 511 LDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 2e-56
Identities = 120/574 (20%), Positives = 222/574 (38%), Gaps = 61/574 (10%)
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
+ N + LL LL + + I F I + + L
Sbjct: 25 AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLS--G 82
Query: 361 YFQNVM--RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQ-VCQA 417
+ + V + + +F + + ++G + + +T D+EQ+ +A
Sbjct: 83 FASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRA 142
Query: 418 LHTLWSAPFRIIISL-VLLYNELGVASLLGALLLVFMFPVQTFIIS----RMQKLTKEGL 472
L ++ II L ++ +N S +L+L+ + PV F IS R +K+++
Sbjct: 143 LVSIVREGASIIGLLTLMFWN-----SWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQ 197
Query: 473 QRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNS 532
++L V Y + + + V N K + ++
Sbjct: 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQM 257
Query: 533 IP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 590
I L V+ + +LTP S L PL L ++ ++ + +
Sbjct: 258 IASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQT 317
Query: 591 MEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVG 650
+ + E + + +++ F++ K E+P L +++ IP G VA+VG
Sbjct: 318 LFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVG 376
Query: 651 GTGEGKTSLISAMLGELP---------------PVSDAS-AVIRGTVAYVPQVSWIFNAT 694
+G GK+++ + L V D +R A V Q +FN T
Sbjct: 377 RSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDT 432
Query: 695 VRDNILFGSAFEPARYE-----KAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQR 748
+ +NI + + E R + + + ++ +P G T IGE G ++SGGQ+QR
Sbjct: 433 IANNIAYAAEGEYTREQIEQAARQAHA----MEFIENMPQGLDTVIGENGTSLSGGQRQR 488
Query: 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQ 805
V++ARA+ ++ V I D+ SALD R + D + KT +++ H LS
Sbjct: 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK----NKTVLVIA---HRLST 541
Query: 806 V---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
+ D I++V EG + E G DL + +L
Sbjct: 542 IEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 291 bits (748), Expect = 1e-85
Identities = 134/597 (22%), Positives = 257/597 (43%), Gaps = 50/597 (8%)
Query: 891 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 949
++ + +F+ L GL V I L+ ++T +S L D K
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLS---LLKPLLDDGFGK 58
Query: 950 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 1007
T + + L + + + +SY + S + + ++ P+ FF
Sbjct: 59 TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK 118
Query: 1008 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 1063
G +++R D ++ + + V + S L ++ S + ++
Sbjct: 119 QSTGTLLSRI---TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 1064 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 1113
++ A + KR SI++ V + L G + +
Sbjct: 176 PIVSIAIRVVS-------KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 1114 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 1173
R ++ K + ++ + ++ + + + +++ A+F V + +
Sbjct: 229 RFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYA-ASFPSVMD---------S 278
Query: 1174 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 1230
T G + ++ +L+ + L ++ + A + + ++ E E R
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVI 335
Query: 1231 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 1290
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R
Sbjct: 336 D--RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 1291 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 1348
+++ G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA
Sbjct: 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 453
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
A+ D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 1409 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
++ IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 208 bits (533), Expect = 2e-57
Identities = 127/571 (22%), Positives = 232/571 (40%), Gaps = 55/571 (9%)
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLL-QSMQQDGPAWIGYIYAFSIFVGVVLGVLCEA 359
G I N S LL LL + + + ++ I + ++ G+
Sbjct: 25 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGI---T 81
Query: 360 QYFQN--VMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQ-VCQ 416
Y + + V ++ T+ +F + + ++G + + +T D+EQ+
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 141
Query: 417 ALHTLWSAPFRIIISL-VLLYNELGVASLLGALLLVFMFPVQTFIIS----RMQKLTKEG 471
AL T+ II ++ Y S +++LV + P+ + I R + ++K
Sbjct: 142 ALITVVREGASIIGLFIMMFYY-----SWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 472 LQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILN 531
+ ++L V + + + V N K ++ + I+
Sbjct: 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 256
Query: 532 SIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLK 589
I L V+ F + LT S L PL L N+ Q + +
Sbjct: 257 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 316
Query: 590 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIV 649
+ L +E++ + + RN F++ + E P L NINL IP G VA+V
Sbjct: 317 TLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALV 375
Query: 650 GGTGEGKTSLISAMLGELP---------------PVSDAS-AVIRGTVAYVPQVSWIFNA 693
G +G GK+++ S L + + + + A +R VA V Q +FN
Sbjct: 376 GRSGSGKSTIAS--L--ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND 431
Query: 694 TVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 751
TV +NI + + + E+A + ++ + G T IGE GV +SGGQ+QR+++
Sbjct: 432 TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 491
Query: 752 ARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV-- 806
ARA+ +S + I D+ SALD R + D + +T +++ H LS +
Sbjct: 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIA---HRLSTIEQ 544
Query: 807 -DRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
D I++V +G++ E GT +L ++ +L
Sbjct: 545 ADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-74
Identities = 129/527 (24%), Positives = 233/527 (44%), Gaps = 55/527 (10%)
Query: 962 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 1021
+++ + + + + +S L + +L + + +I R D+
Sbjct: 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDV 130
Query: 1022 GDIDRNVAVFVNMFMGQVSQLLSTFVLIG-------IVSTMSL--WAIMPLL-----LLF 1067
+ V M + V + + + +G I +S ++P + L
Sbjct: 131 ----TQLQNLVMMLLRIV--VRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184
Query: 1068 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 1127
++ ++ + R E L G +R +A+ R N N
Sbjct: 185 KKGNPLFRKIQESTDEVNRVVR--------ENLLG---VRVVRAFRREEYENENFRKANE 233
Query: 1128 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL-----LLSY 1182
+ A + L + + I AV+ G + M + +Y
Sbjct: 234 SLRRSIISAFSLIVFALPLF--IFIVNMGMIAVLWFGG---VLVRNNQMEIGSIMAYTNY 288
Query: 1183 ALNIT---SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 1239
+ I ++ +L A S +RV E+ +E P + E++ GS+
Sbjct: 289 LMQIMFSLMMIGNILNFIVRASASA---KRVL---EVLNEKPAIEEADNALALPNVEGSV 342
Query: 1240 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299
FE+V RY PVL G++F++ P V ++G TG+GKS+++N + R+++ ERGR+ +
Sbjct: 343 SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402
Query: 1300 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKD 1356
D D+ L DLR + +PQ VLFSGT++ NL + +D ++ EA + A + D
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHD 460
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
I G D++V G NFS GQ+Q LS++RAL+++ K+L+LD+ T++VD T+ I
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 1417 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1463
++ K CT II ++ T + D+IL+L G+V + T +ELL +
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 7e-56
Identities = 129/582 (22%), Positives = 244/582 (41%), Gaps = 57/582 (9%)
Query: 291 LLRALNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAW--IGYIYAFSI- 347
+ L L +W + + + L LL + +G A + I
Sbjct: 10 GSKTLARYLK-PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGIL 68
Query: 348 -----FVGVVLGVLCEAQYF--QNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKI 400
+G V G+ C F G LR +FRK L + F + +
Sbjct: 69 MLIVALIGAVGGIGC--TVFASYASQNFGADLRR----DLFRKVLSFSISNVNRFHTSSL 122
Query: 401 TNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTF 459
+T D QLQ + L + AP + +V+ + S + L+ + + +
Sbjct: 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVW 182
Query: 460 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL-SWFRK 518
+ + L ++ + TD+ ++ E L + V+ + E + N+ L
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKA-NESLRRSIIS 241
Query: 519 AQFLAACNS----FILNSIPVLVTVVSFGMFTLLGGDLTPAR--AFTS---LSLFAVLRF 569
A L FI+N ++ V+ FG + + A+T+ +F+++
Sbjct: 242 AFSLIVFALPLFIFIVNM--GMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLM-- 297
Query: 570 PLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL--PAISIRNGYFSWDSK 627
M+ N++ +V A+ S KR+ E L + I + L ++S N F + +
Sbjct: 298 ---MIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRY-FE 353
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS-------AMLGEL----PPVSDAS-A 675
P L +N + GSLVA++G TG GK++L++ G + V
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLK 413
Query: 676 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHD--LDLLPGGDVT 732
+RG ++ VPQ + +F+ T+++N+ +G E A ++ ++ + Q + LP G +
Sbjct: 414 DLRGHISAVPQETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIHDFIISLPEGYDS 471
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 792
+ G N SGGQKQR+S+ARA+ V I DD S++D +++ ++ G T
Sbjct: 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL-DGLKRYTKGCT 530
Query: 793 RVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 834
++T ++ D+I+++HEG V GT ++L + + ++
Sbjct: 531 TFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYR 572
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 3e-74
Identities = 151/598 (25%), Positives = 262/598 (43%), Gaps = 79/598 (13%)
Query: 902 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 961
L + + ++++ + ++ L V S + D + L +
Sbjct: 29 LGYLRPHT------FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLI 82
Query: 962 LLSF--GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 1019
L + L+ ++ S RL + + R P+ FF P G II+R
Sbjct: 83 LGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV-- 140
Query: 1020 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM-------SLWAIMPLLLLFYAAYL 1072
+ D+D N+ + + Q L G V M SL + + L +
Sbjct: 141 -INDVD-NINNVLGNSIIQF--FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 1073 -------YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGK 1121
Y+ R + +L+ E ++GL+ I+ + K ++ +N
Sbjct: 197 VSSQTRKYFYENQRVLGQLN--------GIIEEDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 1122 ---SMDKNIRYT-----LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 1173
K ++ L+NM N A+ + GG +
Sbjct: 249 LRKVGTKAQIFSGVLPPLMNMVNNLGFAL-ISGFGGWL---------ALKDII------- 291
Query: 1174 STMGLL---LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 1230
T+G + + Y+ T L + ++ + +L + ER+ ++L E + +
Sbjct: 292 -TVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD---DPDAVE 347
Query: 1231 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 1290
G I+F++V Y + PVL ++F I P KV +VG TG+GK++++N L R
Sbjct: 348 LR-EVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
Query: 1291 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWE 1347
+++RG+IL+DG DI K LR +GI+ Q +LFS TV+ NL +P +D ++ E
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKE 463
Query: 1348 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
A + H I+ G + +++ GE+ S GQRQLL+++RA L KIL+LDEAT+ VD
Sbjct: 464 AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 1408 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
+T+ IQ + + + T +IIAHRLNTI + D I++L G ++E +EL+ G
Sbjct: 524 TKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-37
Identities = 112/563 (19%), Positives = 232/563 (41%), Gaps = 80/563 (14%)
Query: 311 IGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVM--RV 368
+ + + P L+ + + + P + + + +G + + + Q + +
Sbjct: 47 TVSSILGVLSPYLIGKTIDVVF--VPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTL 104
Query: 369 GFRLRSTLVAAVFRKSLRI------THEARKNFASGKITNLMTTDAEQLQQVC-QALHTL 421
+ L +F K R+ G I + + D + + V ++
Sbjct: 105 SQDVVFRLRKELFEKLQRVPVGFFDRT------PHGDIISRVINDVDNINNVLGNSIIQF 158
Query: 422 WSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGL 481
+S + ++++++ + SL+ ++ + + S+ +K E + + +G
Sbjct: 159 FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYE--NQ--RVLGQ 214
Query: 482 MN----EILAAMDAVKCYAWENSFQSKVQNVRNDEL--SWFRKAQFLAA----CNSFILN 531
+N E ++ + +K + E K V N+ L KAQ + + + N
Sbjct: 215 LNGIIEEDISGLTVIKLFTREEKEMEKFDRV-NESLRKVGT-KAQIFSGVLPPLMNMVNN 272
Query: 532 SIPVLVTVVSFGMFTLLG----GDLTPARAFTSLS-LFAVLRFPLFMLPNMITQVVNANV 586
L++ G L G + F S F PL L N + A
Sbjct: 273 LGFALISGFG-GWLALKDIITVGTIA---TFIGYSRQFT---RPLNELSNQFNMIQMALA 325
Query: 587 SLKRMEEFLLAEEKILLPNPPLTSGLP-AISIRNGYFSWDSKAERPTLLNINLDIPVGSL 645
S +R+ E L EE+ P+ + I +N +FS+D ++P L +I I G
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYD--KKKPVLKDITFHIKPGQK 383
Query: 646 VAIVGGTGEGKTSLISAML-------GELP----PVSDAS-AVIRGTVAYVPQVSWIFNA 693
VA+VG TG GKT++++ ++ G++ + + +R ++ V Q + +F+
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 694 TVRDNILFGSAFEPARYEKAIDVTSLQHDLD----LLPGGDVTEIGERGVNISGGQKQRV 749
TV++N+ +G+ A E+ + L H D LP G T + + G ++S GQ+Q +
Sbjct: 444 TVKENLKYGN--PGATDEEIKEAAKLTH-SDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV 806
++ RA +N + I D+ S +D + + + + GKT +++ H L+ +
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL----MEGKTSIIIA---HRLNTI 553
Query: 807 ---DRIILVHEGMVKEEGTFEDL 826
D II++ +G + E G ++L
Sbjct: 554 KNADLIIVLRDGEIVEMGKHDEL 576
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 9e-74
Identities = 85/266 (31%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Query: 1203 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFT 1262
+E + +L E V + P G I+FE+V Y L +SFT
Sbjct: 21 MFIDMENM---FDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFT 76
Query: 1263 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 1322
+ P + +VG +GAGKS++L LFR ++ G I IDG DI++ LR +G++PQ
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 1323 PVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1379
VLF+ T+ N+ + ++ A + A + DAI G QV E G S G
Sbjct: 137 TVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1439
++Q ++++R +L+ I++LDEAT+A+D + IQ ++ + + T +++AHRL+T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 1440 CDRILLLDSGRVLEYDTPEELLSNEG 1465
D+IL++ G ++E E LLS G
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGG 280
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 2e-39
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 28/287 (9%)
Query: 570 PLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLTSGLPAISIRNGYFSWDSK 627
++ + + + ++ M + L E ++ LP PL I N +FS+
Sbjct: 7 HHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD- 65
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------- 677
R TL +++ + G +A+VG +G GK++++ +L +S I
Sbjct: 66 -GRETLQDVSFTVMPGQTLALVGPSGAGKSTILR-LLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 678 ---RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
R + VPQ + +FN T+ DNI +G +A E A + + P G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN-DEVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 792
++GERG+ +SGG+KQRV++AR + + + D+ SALD R + + + +T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRT 241
Query: 793 RVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 836
++V H LS V D+I+++ +G + E G E L + G ++ +
Sbjct: 242 TIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 236 bits (606), Expect = 6e-71
Identities = 82/240 (34%), Positives = 141/240 (58%), Gaps = 5/240 (2%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 1353
+LIDG D+A LR+ +G++ Q VL + ++ N+ +P S + A + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
D I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473
I + + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
I+ RN F + + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 7 DITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 672 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 720
D + +R V V Q + + N ++ DNI + EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAG 123
Query: 721 -HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 779 V---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 826
+ + + G+T +++ H LS V DRII++ +G + E+G ++L
Sbjct: 184 IMRNMHKICK----GRTVIIIA---HRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 2e-69
Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 7/231 (3%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL----DPFSEHSDADLWEALERAHL 1354
IDG I L + R +G + Q + +GT+R NL + +++D DLW+ L+ A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFA 118
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
+ + L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1415 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1465
QK + K T L+IAHRL+TI+D D+I ++ G++ EL++
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP 229
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 31/243 (12%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL 667
+S R+ F++D L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 668 ----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 722
P+ + S R + +V Q S I T+R+N+ +G + E V L
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD-YTDEDLWQVLDLAFA 118
Query: 723 LDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
+P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 780 ---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF 833
D ++ G+T +++ H LS + D+I + +G + G +L L+
Sbjct: 179 QKALDSLMK----GRTTLVIA---HRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLY 231
Query: 834 QKL 836
K
Sbjct: 232 AKY 234
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 7e-69
Identities = 81/241 (33%), Positives = 140/241 (58%), Gaps = 8/241 (3%)
Query: 1237 GSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295
+I+F DV Y + L ++F IP +VG TG+GKS++ L+R + E G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 1296 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERA 1352
I I G ++ K+ +R I+GI+PQ +LF+ T+++N+ + +D ++ +A + A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSA 132
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
L D I D V G S G+RQ ++++R LL+ KI++ DEAT+++D +T+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 1413 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472
L QK + + K+ T++IIAHRL+TI + I+LL+ G+++E T ++LL G +++M
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEMW 251
Query: 1473 Q 1473
Sbjct: 252 N 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-37
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GE- 666
I + FS+ + TL +IN IP G+ A+VG TG GK+++ + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 667 ------LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720
+ + S IR + VPQ + +FN T++ NIL+G A E+ I T
Sbjct: 77 KIGGKNVNKYNRNS--IRSIIGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSA 132
Query: 721 HDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 777
D LP T +G +G+ +SGG++QR+++AR + + + IFD+ S+LD+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 778 QVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 834
+ + +T +++ H LS + + IIL+++G + E+GT +DL +
Sbjct: 193 LF-QKAVEDLRKNRTLIIIA---HRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYA 248
Query: 835 KL 836
++
Sbjct: 249 EM 250
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 3e-57
Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)
Query: 1236 SGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 1293
G +KF+DV Y P + VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1294 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALER 1351
G++L+DG + ++ L + + Q P+LF + R N+ + ++
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1352 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 1411
+ D I G D +V E G S GQRQ ++L+RAL+R+ ++L+LD AT+A+D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1412 ALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG-CYR 251
Query: 1470 KMVQ 1473
MV+
Sbjct: 252 SMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 4e-35
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 33/259 (12%)
Query: 607 PLTSGLP------AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 660
PL+ L + ++ F++ + L + + G + A+VG G GK+++
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 661 SAML-------GEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 708
+ + G++ P+ + VA V Q +F + R+NI +G
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTP 121
Query: 709 RYEKAIDVTSLQ--HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 765
E+ V HD + P G TE+GE G +SGGQ+Q V++ARA+ + I D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 766 DPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKE 819
+ SALDA +V E + +T +L+T LS I+ + EG V E
Sbjct: 182 NATSALDAGNQLRVQRLLYESP--EWASRTVLLIT---QQLSLAERAHHILFLKEGSVCE 236
Query: 820 EGTFEDLSNNGELFQKLME 838
+GT L G ++ ++E
Sbjct: 237 QGTHLQLMERGGCYRSMVE 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-32
Identities = 51/246 (20%), Positives = 102/246 (41%), Gaps = 33/246 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ + + + + +L +S+ I DK + G GAGK+++LN L G +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1299 IDGFDIAKFG--LMDLRKILGIIPQS---PVLFSGTVR-------FN-LDPFSEHSDADL 1345
+ G K G +R+ +G + S V F + + + D
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1346 WEA---LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1402
EA L+ + ++ L S G++Q + ++RAL+ + ++L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 1403 TAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1458
A +D + + + + M+ + H + I +ILLL G+ ++ E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 1459 ELLSNE 1464
++L++E
Sbjct: 249 DILTSE 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 5e-22
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 35/240 (14%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
I + + L I+ I G + G G GKT+L++ + P S
Sbjct: 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 673 ASAV--------------IRGTVAYVPQ---VSWIFNATVRDNILFGSAFEPARYEKAID 715
+ +R + +V + V D ++ G+ Y+
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD--- 133
Query: 716 VTSLQHD-----LDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLS 769
+ + L L+ ++ ++ + +S G+KQRV +ARA+ V I D+P +
Sbjct: 134 IDDEIRNEAHQLLKLV---GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 770 ALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 826
LD + + + VT+ + ++ +I+L+ +G ++G ED+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
A+S+ N F + ++ +N D+ G ++A++G G GK++L+ +LG P+
Sbjct: 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ- 59
Query: 673 ASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLL 726
+ ++ +VPQ S F +V D +L G + F K+ D LD L
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF---AKPKSHDYQVAMQALDYL 116
Query: 727 PGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 785
++T + +R +SGGQ+Q + +ARA+ S + + D+P SALD V +
Sbjct: 117 ---NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS--LL 171
Query: 786 GELS---GKTRVLVTNQLHFLSQV----DRIILVHEGMV 817
+L+ T V T H +QV ++ +L+++
Sbjct: 172 IDLAQSQNMTVVFTT---HQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 51/242 (21%), Positives = 117/242 (48%), Gaps = 41/242 (16%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
++ E++ Y+ E + L+F + D + ++G+ G GKS++L+ L I +G+I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1298 LIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTV-------RF-NLDPFSEHSDADL--- 1345
++ + +G +PQ F+ +V R +++ F++ D
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 1346 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
+AL+ +L +R + + S GQRQL+ ++RA+ K+++LDE T+A
Sbjct: 110 MQALDYLNLTHLAKR-------EFTS----LSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 1406 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
+D+ ++ + + + ++ T++ H+ N ++ ++ LLL+ + ++ +L+
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQNFKFGETRNILT 217
Query: 1463 NE 1464
+E
Sbjct: 218 SE 219
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 6e-30
Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELER 1294
+K E++ Y + L G++ I + I+G G GKS TLF+ I++
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKS----TLFQNFNGILKPSS 62
Query: 1295 GRILIDGFDIA--KFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHSDA 1343
GRIL D I + G+M LR+ +GI+ Q P LFS +V F N+ E
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPED--- 118
Query: 1344 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
E +R +A++R G++ + S GQ++ ++++ L+ K+L+LDE T
Sbjct: 119 ---EIRKRV--DNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 1404 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
A +D + I K + E + T++I H ++ + CD + ++ GRV+ P+E+
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 1461 LSNE 1464
+ +
Sbjct: 232 FAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-23
Identities = 62/286 (21%), Positives = 110/286 (38%), Gaps = 66/286 (23%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 671
+ + +++ L IN++I G + AI+GG G GK++L G L P S
Sbjct: 6 YILKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 672 -------------DASAVIRGTVAYV---P--QVSWIFNATVRDNILFG------SAFE- 706
+R ++ V P Q +F+A+V ++ FG E
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ---LFSASVYQDVSFGAVNMKLPEDEI 120
Query: 707 PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 766
R + A+ T ++H D +S GQK+RV++A + V I D+
Sbjct: 121 RKRVDNALKRTGIEHLKDKPT-----------HCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 767 PLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEE 820
P + LD ++ ++ E G T ++ T H + V D + ++ EG V +
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKE-LGITIIIAT---HDIDIVPLYCDNVFVMKEGRVILQ 225
Query: 821 GT----FED---LSNNG-------ELFQKLMENAGKMEEYVEEKED 852
G F + + L + L E G + + ++E
Sbjct: 226 GNPKEVFAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEGHH 271
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 5e-29
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 1238 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IV 1290
I+ +V + P L +S I + + + G TG+GKS TL + ++
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKS----TLLQIVAGLI 57
Query: 1291 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHS 1341
E G +L DG ++R+ +GI Q P F+ V F N P
Sbjct: 58 EPTSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP-DR-- 111
Query: 1342 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
+ + K A+ L D+ S G+++ ++++ ++ IL+LDE
Sbjct: 112 -----DPVPLV--KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164
Query: 1402 ATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1459
+D + + + + + T+++I+H + T+I+ DR+++L+ G+ + T E
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 1460 LLSN 1463
L
Sbjct: 225 FLEK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 43/246 (17%)
Query: 614 AISIRNGYFSWD--SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 671
I + N + + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 672 DASAV---------IRGTVAYV---P--QVSWIFNATVRDNILFG------SAFEPARYE 711
IR + P Q F V D + F +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQ---FFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 712 KAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
KA++ L D +R +SGG+K+RV++A + D+ I D+PL
Sbjct: 119 KAMEFVGL----------DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 771 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 826
LD + + + GKT +L++ H + V DR++++ +G +GT +
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILIS---HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 827 SNNGEL 832
+
Sbjct: 226 LEKYDP 231
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 55/256 (21%), Positives = 119/256 (46%), Gaps = 28/256 (10%)
Query: 1224 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS--- 1280
+ S++ G++ +D+ R + +L G+SF I + G++G GAGK+
Sbjct: 1 MGSDKIHHHHHHMGAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTL 58
Query: 1281 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE 1339
+++TL + G + + G ++ + ++RK++ +P+ + L
Sbjct: 59 RIISTLIKPSS---GIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFV-- 112
Query: 1340 HSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 1397
A + A + +++ + R GL ++ + +S G + L ++RAL+ ++
Sbjct: 113 ---AGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168
Query: 1398 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-----CDRILLLDSGRV 1451
+LDE T+ +DV ++K +++ + T+L+ +H + CDRI L+ +G +
Sbjct: 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNGTI 224
Query: 1452 LEYDTPEELLSNEGSS 1467
+E T EEL +
Sbjct: 225 VETGTVEELKERYKAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 683
I+ +I G + ++G G GKT+ + + + P V + +R ++Y
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92
Query: 684 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
+P+ + + N + + F S+ E+A ++ L +
Sbjct: 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS------- 145
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 793
S G +++ +ARA+ N + I D+P S LD R+V + E G T
Sbjct: 146 ----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLT- 198
Query: 794 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEY 846
+LV++ H + +V DRI L+H G + E GT E+L + + E E +
Sbjct: 199 ILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ D+ + Y VL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-----HSDADLWEALERA 1352
+G I K ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 68 YNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
+ D + LG S G + + L+ LL ++I VLD+ A+D +
Sbjct: 123 EVLD--LKKKLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 1413 LIQKTIREEFKSCTMLIIA--HRLNTIIDCDRILLLDSGRVL 1452
+ K+I E K ++II+ L+ CD L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 31/222 (13%)
Query: 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 672
+ IR+ +D L I + I G++V G G GKT+L+ + L P+
Sbjct: 9 SKLEIRDLSVGYDKPV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 673 ASAV-------IRGTVAYVPQVSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSL 719
++G + ++P+ + +V D + G A++ +
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
Query: 720 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
++G +S G +RV +A + N+++++ DDP+ A+D +V
Sbjct: 125 LDLKK--------KLG----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 780 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 821
+ ++ + LS D +H+ K +
Sbjct: 173 LKSILEILKEKGIVIISSR--EELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 36/229 (15%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
L LS + + + +VG GAGKS++L + + +G I G + + L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLA 72
Query: 1314 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDADL-WEALERAHLKDAIRRNSLGLDA 1367
+ Q F+ V + + +L + L D + R++ L
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALDDKLGRSTNQL-- 127
Query: 1368 QVSEAGENFSVGQRQLLSLSRALL-------RRSKILVLDEATAAVDVR----TDALIQK 1416
S G+ Q + L+ +L ++L+LDE ++DV D ++
Sbjct: 128 ---------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1417 TIREEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
++ +++ +H LN T+ R LL G++L EE+L+
Sbjct: 179 LSQQ---GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 9e-20
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 37/219 (16%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAVI 677
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 70
Query: 678 RG-TVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
AY+ Q F V + +++K L L + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLH------QHDKT-RTELLNDVAGAL---ALDDKL 120
Query: 736 ERGVN-ISGGQKQRVSMARA-------VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 787
R N +SGG+ QRV +A + + D+P+++LD +
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 788 LSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 822
G V+ H L+ R L+ G + G
Sbjct: 181 QQGLAIVMS---SHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 28/229 (12%)
Query: 615 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----- 668
I ++N + K ER +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 669 -----PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 723
V IR +P+ ++ TV D + + + +++ L
Sbjct: 61 FINGMEVRKIRNYIRY-STNLPE-AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA---L 115
Query: 724 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 782
L EI R + +S GQ V + A+ S ++ D+P +DA R V R
Sbjct: 116 KLGE-----EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA-ARRHVISR 169
Query: 783 CIRGELSGKTRVLVT-NQLHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 829
I+ E GK +LVT + ++ + +L +
Sbjct: 170 YIK-EY-GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-22
Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 30/236 (12%)
Query: 1239 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
I+ ++V + + L ++ + +KV I+G G+GK+++L + ++ G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GN 59
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG--TVR----FNLDPFSEHSDADLWEALE 1350
I I+G ++ K +R + P + TV + E L+
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-DRDLFLEMLK 113
Query: 1351 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1410
L + I L ++ + S GQ L+ S AL + +I+ LDE VD
Sbjct: 114 ALKLGEEI------LRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1411 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEELLSNE 1464
+I + I+E K +++ H L+ + + G L+ + ELL +
Sbjct: 164 RHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 1218 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRT 1275
+ IK ++ + + L+ +S +P G++G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 1276 GAGKSSMLNTLFRIV-ELER---GRILIDGFDIAKF---GLMDLRKILGIIPQSPVLFSG 1328
GAGKS TL R V LER G +L+DG ++ L R+ +G+I Q L S
Sbjct: 64 GAGKS----TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119
Query: 1329 -TVRFNLDPFSEHSDADLWEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQ 1380
TV N+ LE + KD ++R L GL + N S GQ
Sbjct: 120 RTVFGNVA-----------LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNT 1436
+Q ++++RAL K+L+ D+AT+A+D T L++ I T+L+I H ++
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLG-LTILLITHEMDV 226
Query: 1437 IID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470
+ CD + ++ +G ++E DT E+ S+ + ++
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 4e-14
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 41/251 (16%)
Query: 604 PNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISA 662
I + N + L N++L +P G + ++G +G GK++LI
Sbjct: 14 SGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR- 72
Query: 663 MLGELPPVSDASAVIRGT----------VAYVPQVSWIF-------NATVRDNILFGSAF 705
+ L ++ S ++ G Q+ IF + TV N+
Sbjct: 73 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PL 130
Query: 706 EPARYEKA-ID--VTSLQHDLDLLPGGDVTEIGERG----VNISGGQKQRVSMARAVYSN 758
E K + VT L L L+ +G++ N+SGGQKQRV++ARA+ SN
Sbjct: 131 ELDNTPKDEVKRRVTEL---LSLV------GLGDKHDSYPSNLSGGQKQRVAIARALASN 181
Query: 759 SDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEG 815
V + D SALD R + + + I L G T +L+T+++ + ++ D + ++ G
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNG 240
Query: 816 MVKEEGTFEDL 826
+ E+ T ++
Sbjct: 241 ELIEQDTVSEV 251
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 603 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 662
L + + S L +I G ++ IVG G GKT+ +
Sbjct: 346 LSERVDVERETLVEYPRLVKDYGSFK----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 401
Query: 663 MLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 721
+ G P TVAY PQ + + TV + L T L
Sbjct: 402 LAGVEEPTEG-KVEWDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSK-LNSNFYKTELLK 457
Query: 722 DLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
L + ++ +R V ++SGG+ QRV++A + ++D+++ D+P + LD V
Sbjct: 458 PLGI------IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 781 DRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLM 837
R IR E + KT ++V + + + V DR+I V EG G E + +
Sbjct: 512 -RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-VFEGEPGRHGRALPPMGMREGMNRFL 569
Query: 838 ENAG 841
+ G
Sbjct: 570 ASVG 573
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 1e-20
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 40/226 (17%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-------FRIVELER 1294
ED V RY VL+ + VGIVG G GK++ + L
Sbjct: 95 EDCVHRYGVNAF-VLYR-LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS- 151
Query: 1295 GRILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDAD 1344
+I F + ++ + + P G VR L E +
Sbjct: 152 WDNVIRAFRGNEL-QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE 210
Query: 1345 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 1404
E ++ L++ LD ++ + S G+ Q ++++ ALLR++ DE ++
Sbjct: 211 --EVVKELELENV-------LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 1405 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID--CDRILLL 1446
+D+R + + IR + +L++ H L ++D D I ++
Sbjct: 258 YLDIRQRLKVARVIR-RLANEGKAVLVVEHDLA-VLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 6e-19
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 32/217 (14%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
L I + +GIVG G GK++ + L + E G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------T 418
Query: 1315 ILGIIPQSPVLFSGTVR---FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1371
+ + GTV +D +S+ E L+ + D RN V +
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN-------VED 471
Query: 1372 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 1429
S G+ Q ++++ LLR + I +LDE +A +DV + + IR E T L+
Sbjct: 472 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 1430 IAHRLNTIID--CDRILLLDSGRVLEYDTPEELLSNE 1464
+ H + +ID DR+++ + G + +
Sbjct: 528 VEHDV-LMIDYVSDRLIVFE-GEPGRHGRALPPMGMR 562
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 6e-15
Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 51/255 (20%)
Query: 613 PAISIRNGYFSWD-----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 667
AISI N D +L + G +V IVG G GKT+ + + G+L
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
Query: 668 PP-----------------VSDASAVIR----GTVAYVPQ---VSWIFNATV-RDNILFG 702
P ++ G + V + V + A + L
Sbjct: 142 IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201
Query: 703 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 762
E ++E+ + L++ LD +SGG+ QRV++A A+ + +
Sbjct: 202 KVDEVGKFEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFY 250
Query: 763 IFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVH-----E 814
FD+P S LD +V R IR L GK ++V + L L + D I +V+
Sbjct: 251 FFDEPSSYLDIRQRLKV-ARVIR-RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
Query: 815 GMVKEEGTFEDLSNN 829
G+ + + N
Sbjct: 309 GIFSKPKGTRNGINE 323
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-22
Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 32/256 (12%)
Query: 1216 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 1275
+EA ++ S S F L+ VL+ S+ + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGEN 387
Query: 1276 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFN 1333
G GK++++ L ++ + G+ + +++ + + V LF +R
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIR-- 439
Query: 1334 LDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392
+ + + ++ + D I + V S G+ Q +++ AL
Sbjct: 440 ----GQFLNPQFQTDVVKPLRIDDIIDQE-------VQH----LSGGELQRVAIVLALGI 484
Query: 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSG 1449
+ I ++DE +A +D + K IR T I+ H D++++ +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 1450 RVLE--YDTPEELLSN 1463
PE LL+
Sbjct: 545 PSKNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-22
Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 33/280 (11%)
Query: 578 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA---------ISIRNGYFSWDSKA 628
+T + + + + E + L + S Y S
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQ 363
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-V 687
L + ++ ++G G GKT+LI + G L P + + + V+ PQ +
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPKLNVSMKPQKI 422
Query: 688 SWIFNATVRDNI---LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 744
+ F TVR + G P + + +D ++SGG
Sbjct: 423 APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGG 471
Query: 745 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLH 801
+ QRV++ A+ +D+++ D+P + LD+ R I + KT +V +
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFI 529
Query: 802 FLSQV-DRIILVHEGMVKE--EGTFEDLSNNGELFQKLME 838
+ + D++I+ K E L F K +
Sbjct: 530 MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-19
Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 39/248 (15%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI---- 1297
V RY LH L T P +G+VG G GKS+ L L + GR
Sbjct: 81 AHVTHRYSAN-SFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 1298 -------LIDGFDIAKFGLMDLRKILGIIPQSPVLF------SGTVRF---NLDPFSEHS 1341
G ++ + L + I + + G V+ L E S
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 1342 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
D+ ++ L++ ++R+ + + S G+ Q ++ + ++ + + + DE
Sbjct: 199 PEDVKRYIKILQLENVLKRD-------IEK----LSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 1402 ATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457
++ +DV+ + IR K ++ + H L+ + D + ++ +
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTK--YVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVT 305
Query: 1458 EELLSNEG 1465
EG
Sbjct: 306 LPASVREG 313
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 6e-18
Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 41/246 (16%)
Query: 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-- 669
LP + + + + + L+ G ++ +VG G GK++ + + G+ P
Sbjct: 75 LPTNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
Query: 670 --------VSDASAVIRGT---------------VAYVPQVSWIFNATVRDNILF-GSAF 705
+ RG+ PQ ++ + G
Sbjct: 132 GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL 191
Query: 706 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIF 764
+ + DV L L + +R + +SGG+ QR ++ + +DV++F
Sbjct: 192 KLRMEKSPEDVKRYIKILQL------ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 765 DDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 821
D+P S LD + IR L K + V + L L + D + +++
Sbjct: 246 DEPSSYLDVKQRLNAA-QIIR-SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGV 303
Query: 822 TFEDLS 827
S
Sbjct: 304 VTLPAS 309
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-22
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 23/258 (8%)
Query: 595 LLAEEKILLPNPPLTSGLPA------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 648
L +E + + Y L +I G ++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 649 VGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEP 707
VG G GKT+ + + G P ++ TVAY PQ + + TV + L
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEP-TEGKIEWDLTVAYKPQYIKADYEGTVYE--LLSKIDAS 374
Query: 708 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDD 766
+ T L L + ++ +R V +SGG+ QRV++A + ++D+++ D+
Sbjct: 375 -KLNSNFYKTELLKPLGI------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 767 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 823
P + LD V R IR E + KT ++V + + + V DR++ V EG + G
Sbjct: 428 PSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM-VFEGEPGKYGRA 485
Query: 824 EDLSNNGELFQKLMENAG 841
E + + + G
Sbjct: 486 LPPMGMREGMNRFLASIG 503
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 1e-19
Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 36/224 (16%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV------ELERG 1295
ED V RY VL+ L + VGIVG G GKS+ + L + + +
Sbjct: 25 EDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 1296 RILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDADL 1345
+I F + K+ + + P G V L E +
Sbjct: 83 DGVIRAFRGNEL-QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE- 140
Query: 1346 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 1405
E ++ L++ + R + S G+ Q ++++ ALLR + DE ++
Sbjct: 141 -EVVKALELENVLERE-------IQH----LSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 1406 VDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLL 1446
+D+R + IR ++L++ H L + D I ++
Sbjct: 189 LDIRQRLNAARAIR-RLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-19
Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 35/251 (13%)
Query: 1219 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 1278
+ + + +V Y L I + +GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1279 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR---FNLD 1335
K++ + L + E G+I D + + GTV +D
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKID 372
Query: 1336 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 1395
+S+ E L+ + D R S G+ Q ++++ LLR +
Sbjct: 373 ASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDAD 421
Query: 1396 ILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID--CDRILLLDSGRV 1451
I +LDE +A +DV + + IR E T L++ H + +ID DR+++ + G
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFE-GEP 479
Query: 1452 LEYDTPEELLS 1462
+Y +
Sbjct: 480 GKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 9e-13
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 46/220 (20%)
Query: 634 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVIR---------- 678
L + G +V IVG G GK++ + + G+L P VIR
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 679 ------GTVAYVPQ------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 726
G + V + + V + + A E + E+ + L++ L+
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLE-- 153
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 786
EI +SGG+ QRV++A A+ N+ + FD+P S LD IR
Sbjct: 154 -----REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIR- 202
Query: 787 EL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 823
L GK+ ++V + L L + D I +V+ G G F
Sbjct: 203 RLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIF 241
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-22
Identities = 59/313 (18%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 578 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS---------IRNGYFSWDSKA 628
+++ A V + + L E + + + L +S + + K
Sbjct: 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 688
L+ N + G ++ I+G G GKT+ ++GE+ + + ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 689 WI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQK 746
+ ++ TV+ +A + A + + L+L + E V ++SGG+
Sbjct: 340 FPNYDGTVQQ--YLENASKDALSTSSWFFEEVTKRLNL------HRLLESNVNDLSGGEL 391
Query: 747 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLHFL 803
Q++ +A + +D+++ D P S LD R + + I+ ++ ++ + L
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEE-RYIVAKAIK-RVTRERKAVTFIIDHDLSIH 449
Query: 804 SQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSK 862
+ DRII V +G ++ G ++ M E++ E E D +T +
Sbjct: 450 DYIADRII-VFKGEPEKAGLATS--------PVTLKTG--MNEFLRELEVTFRRDAETGR 498
Query: 863 PAANGVDNDLPKE 875
P N + + L +
Sbjct: 499 PRVNKIGSYLDRV 511
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-22
Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 49/279 (17%)
Query: 1217 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 1276
++ E + +K+ ++ + L + + +GI+G G
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGILGPNG 304
Query: 1277 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-D 1335
GK++ L + + G + + ++ ++I + GTV+ L +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS----YKPQRIF-------PNYDGTVQQYLEN 353
Query: 1336 PFSEHSDADLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392
+ W E +R +L + N V++ S G+ Q L ++ L +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESN-------VND----LSGGELQKLYIAATLAK 402
Query: 1393 RSKILVLDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIID--CDRILLLD 1447
+ + VLD+ ++ +DV ++ K I+ E K II H L+ I D DRI++
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLS-IHDYIADRIIVFK 460
Query: 1448 SGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSL 1486
G + + ++LR L
Sbjct: 461 -GEPEKAGLATS------------PVTLKTGMNEFLREL 486
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 5e-19
Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 35/243 (14%)
Query: 1242 EDVVLRYRPELPPVLHGLSFTIP-PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 1300
+V+ RY+ P + +G++G+ G GK+++L L G I+ +
Sbjct: 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPN 52
Query: 1301 --GFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVR-----FNLDPFSEHSDADLWEAL 1349
+ L++ + + +S ++ ++ S+ + E L
Sbjct: 53 FGDPNSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEIL 110
Query: 1350 ERAHLKDAIRR--NSLGL----DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
+ + L + + + S G Q L ++ +LLR + + + D+ +
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANI----LSGGGLQRLLVAASLLREADVYIFDQPS 166
Query: 1404 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462
+ +DVR + K IRE K+ ++++ H L + D I ++ + + +
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 1463 NEG 1465
G
Sbjct: 227 RVG 229
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 5e-16
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 29/216 (13%)
Query: 635 NINLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP----------VSDASAVIRGT-VA 682
L P +++ ++G G GKT+++ + GE+ P + RG +
Sbjct: 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75
Query: 683 YVPQ---------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
+ V I L G+ K + +LL ++T
Sbjct: 76 NYFKELYSNELKIVHKIQYVEYASKFLKGT--VNEILTKIDERGKKDEVKELL---NMTN 130
Query: 734 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 792
+ + +SGG QR+ +A ++ +DV+IFD P S LD + IR L K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKY 189
Query: 793 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 827
++V + L L + D I +++ + +
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314
+ G+ +P V ++G GAGK++ L+ + +V ++G+I+ +G DI
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN---KPAHV 77
Query: 1315 I--LGIIPQSP---VLFSG-TVRFNLD--PFSEHSDADLWEALERAH-----LKDAIRRN 1361
I +GI P +F TV NL ++ + LE LK+ R
Sbjct: 78 INRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLK 134
Query: 1362 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---AAVDVRTDALIQKTI 1418
L G S G++Q+L++ RAL+ R K+L++DE + A + V + + I
Sbjct: 135 QL--------GG-TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 1419 REEFKSCTMLII---AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1464
+E T+L++ A + +L++G+++ ELL NE
Sbjct: 186 NQE--GTTILLVEQNALGALKV--AHYGYVLETGQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 7e-12
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 31/218 (14%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRG 679
+ I+L +P G +V ++G G GKT+ +SA+ G + A + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 680 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER- 737
+A VP+ IF TV +N++ G+ + D L+ L P + ER
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD---LEWIFSLFP-----RLKERL 133
Query: 738 ---GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 792
G +SGG++Q +++ RA+ S + + D+P L + +VF+ + I E G T
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTT 191
Query: 793 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 829
+LV N L L ++ G + EG +L +N
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 1315
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI + ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN---KEPAEL 79
Query: 1316 --LGIIP--QSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKD--AIRRNS----- 1362
GI+ Q+P TV N L ++ L + + + +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 1363 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 1418
L L S GQ +L+ + RAL+ K++V+DE A V + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 1419 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+ + T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 200 KAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 635 NINLDIPVGS-LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 688
+N+D +G ++G TG GK+ + ++ + + G + +P +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLE-LIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 689 WIF-------NATVRDNILFGSAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 736
++ + +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 737 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------G 790
+SGG++QRV++ARA+ + + D+PLSA+D + EL
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL-----MEELRFVQREFD 177
Query: 791 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
+ VT + + D + ++ G + E+G ++L
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 42/211 (19%)
Query: 1269 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-- 1326
++G TGAGKS L + IV+ +RG + ++G DI L R+ +G +PQ LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 1327 ---SGTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382
+ + L D + E E+ + + R A++S G G+RQ
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP----ARLS--G-----GERQ 133
Query: 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS------CTMLIIAHRLNT 1436
++L+RAL+ + ++L+LDE +AV D + + EE + +L + H
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAV----DLKTKGVLMEELRFVQREFDVPILHVTH---- 185
Query: 1437 IID-------CDRILLLDSGRVLEYDTPEEL 1460
D D + ++ +GR++E +EL
Sbjct: 186 --DLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 49/246 (19%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I ++N + K + L N+N++I G I+G +G GKT+ + ++ L S
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMR-IIAGLDVPSTGE 61
Query: 675 AVIRGTV------AYVP----QVSWIF-------NATVRDNILFG------SAFE-PARY 710
+ VP ++ +F N T +NI F S E R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 711 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 771 LDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTF 823
LDA + R + G T ++V+ + + DR+ ++ +G + + G
Sbjct: 171 LDARMRDSA-----RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225
Query: 824 EDLSNN 829
EDL +N
Sbjct: 226 EDLYDN 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELE 1293
I ++V ++ L ++ I ++ GI+G +GAGK+ T RI+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKT----TFMRIIAGLDVPS 58
Query: 1294 RGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEA 1348
G + D +A G + + RKI G++ Q+ L+ T N+ F
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYPNLTAFENI-AF----------P 106
Query: 1349 LERAHL-KDAIRRNSLGLDAQVSEAGE-------------NFSVGQRQLLSLSRALLRRS 1394
L + K+ IR+ +V E + S Q+Q ++L+RAL++
Sbjct: 107 LTNMKMSKEEIRK-------RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159
Query: 1395 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDR 1442
+L+LDE + + DA ++ + R K + RL T++ D DR
Sbjct: 160 SLLLLDEPFSNL----DARMRDSARALVKE-----VQSRLGVTLLVVSHDPADIFAIADR 210
Query: 1443 ILLLDSGRVLEYDTPEELLSNEGSSF 1468
+ +L G++++ PE+L N S
Sbjct: 211 VGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 689
NINL I G +A++G +G GK++L+ + + + V +P V
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLY-TIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79
Query: 690 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
+F + TV NI F + + + + L+ P
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW------- 132
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 789
+SGGQ+QRV++ARA+ +V + D+PLS LDA + +V R EL
Sbjct: 133 ----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-----RAELKRLQKEL 183
Query: 790 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 829
G T V VT H Q DRI ++ EG + + GT +++
Sbjct: 184 GITTVYVT---H--DQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 1e-14
Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 605 NPPLTSGLPAISIRNGY--FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 662
+ G I + +++ + ++ I G +V ++G +G GKT+++
Sbjct: 5 HHHHHHGSMTIEFVGVEKIYPGGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILR- 59
Query: 663 MLGELPPVSDASAVIRGT-VAYVP----QVSWIF-------NATVRDNILFG-------S 703
++ L + I G V +P V +F + TV DN+ FG
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119
Query: 704 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVF 762
AR + + L+ R + +SGGQ+QRV++ARA+ V
Sbjct: 120 DEMDARVRELLRFMRLES------------YANRFPHELSGGQQQRVALARALAPRPQVL 167
Query: 763 IFDDPLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEG 815
+FD+P +A+D + R++ R + G T V VT +Q L DR++++HEG
Sbjct: 168 LFDEPFAAIDTQIRREL-----RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
Query: 816 MVKEEGTFEDL 826
V++ GT E++
Sbjct: 223 NVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-08
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 51/250 (20%)
Query: 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---- 1290
S +I+F V Y + G+SF I + VG++G +G+GK+ T+ R++
Sbjct: 11 GSMTIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKT----TILRLIAGLE 65
Query: 1291 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSD 1342
+G + I G + R + G++ Q+ LF TV N+ + D
Sbjct: 66 RPTKGDVWIGGKRVTDLPPQK-RNV-GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD 123
Query: 1343 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 1402
A + E L L+ R ++S G GQ+Q ++L+RAL R ++L+ DE
Sbjct: 124 ARVRELLRFMRLESYANRFP----HELS--G-----GQQQRVALARALAPRPQVLLFDEP 172
Query: 1403 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSGR 1450
AA+ D I++ +R + + + T + D DR+L+L G
Sbjct: 173 FAAI----DTQIRRELRTFVRQ-----VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
Query: 1451 VLEYDTPEEL 1460
V ++ TPEE+
Sbjct: 224 VEQFGTPEEV 233
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 54/232 (23%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 676
L N+NL+I G V+I+G +G GK+++++ ++G L P +D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 677 IRG-TVAYVPQVSWIFN----ATVRDN-----ILFGSAFEPA--RYEKAIDVTSLQHDLD 724
IR + +V Q FN T +N I R ++A++ L
Sbjct: 80 IRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LK 130
Query: 725 LLPGGDVTEIGERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
+ E+ ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++
Sbjct: 131 MA------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 780 FDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 828
+ +L GKT V+VT+ ++ +RII + +G V+ E +
Sbjct: 185 MQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 1239 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
+K ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1297 ILIDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSE 1339
+ ID L +R +G + Q FNL P F
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---------FNLIPLLTALENVELPLIFKY 112
Query: 1340 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILV 1398
E +RA + ++ L+ + + N S GQ+Q ++++RAL I++
Sbjct: 113 RGAMSGEERRKRA--LECLKM--AELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 1399 LDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 2e-14
Identities = 75/495 (15%), Positives = 136/495 (27%), Gaps = 144/495 (29%)
Query: 1184 LNITSLLTAVLRL-ASLAENSLNAVER-VG-----NYIELPSEAPLVIESNRPPPGWPSS 1236
+ ++ LRL +L V++ V NY ++ + PS
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSM 107
Query: 1237 GSIKFEDVVLR-------------YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 1283
+ + + R R + L + P+ V I G G+GK+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 1284 NTLFRIVELERGRILIDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP-FSEH 1340
+ +++ F I + + + + Q L + +DP ++
Sbjct: 168 LDVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEMLQK--LL-----YQIDPNWTSR 216
Query: 1341 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 1400
SD L ++ +RR LL +LVL
Sbjct: 217 SDHSSNIKLRIHSIQAELRR----------------------LLKSKP--YENC-LLVLL 251
Query: 1401 EATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID------CDRILLLDSGRVLE 1453
+V+ F SC +L+ R + D I L L
Sbjct: 252 ------NVQN-----AKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 1454 YDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQI---------- 1503
D + LL +YL L E
Sbjct: 300 PDEVKSLL------------------LKYL------DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 1504 ---DGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKK----TKDAVVTL 1556
DG W W L + SS L LE + + + A +
Sbjct: 336 SIRDGLATW---DNWKHVNCDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 1557 QGVLE----GKHDKEIEESLNQ-HEVS-TDGWWSALYRMIEGLSVMSRLARN---RLHQS 1607
+L ++ +N+ H+ S + I + + ++ LH+S
Sbjct: 390 I-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1608 --DYDLEERSIDWDH 1620
D+ ++ D D
Sbjct: 449 IVDHYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 7e-12
Identities = 75/517 (14%), Positives = 146/517 (28%), Gaps = 168/517 (32%)
Query: 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVP-Q 686
R LL + V I G G GKT + A V + +
Sbjct: 141 RQALLELR----PAKNVLIDGVLGSGKTWV-------------ALDVCLSYKVQCKMDFK 183
Query: 687 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746
+ W+ N + P + + Q D + D + + ++ +
Sbjct: 184 IFWL-N--------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 747 QRVSMARAVYSNSDVFIFDD--PLSALDAHVGRQVFD-RCIRGELSGKTRVLVTNQLHFL 803
+R+ + Y N + + + A +A F+ C ++L+T + F
Sbjct: 235 RRL-LKSKPYENC-LLVLLNVQNAKAWNA------FNLSC---------KILLTTR--FK 275
Query: 804 SQVDRI---ILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKT 860
D + H + T L K Y++ +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----------YLDCRPQ-------- 316
Query: 861 SKPAANGVDNDLPKEASDT---------RKTKEGKSVL-----IKQEERETGV-VSFKVL 905
DLP+E T ++G + + ++ T + S VL
Sbjct: 317 ----------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 906 S------RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD--------------- 944
+ + + + W D
Sbjct: 367 EPAEYRKMFDR-------------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 945 QSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL---IISSLYAAKRLHDAMLHSILRAP 1001
S ++ +I S+ ++ V L N Y L I+ Y + D ++
Sbjct: 414 YSLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDH-YNIPKTFD--SDDLIPPY 468
Query: 1002 M---VFFHTNPLGR-IINRFAKDLGDIDRNVAVFVNM-FMGQVSQLLSTFVLIGIVSTMS 1056
+ + H +G + N + + R VF++ F+ Q I +
Sbjct: 469 LDQYFYSH---IGHHLKNIEHPERMTLFRM--VFLDFRFLEQ-----------KIRHDST 512
Query: 1057 LW----AIMPLL--LLFYAAYLYYQSTAREVKRLDSI 1087
W +I+ L L FY Y+ E + +++I
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 2e-11
Identities = 102/721 (14%), Positives = 210/721 (29%), Gaps = 249/721 (34%)
Query: 190 LLLVYVP----ELDPYPGYTP-MRTELVDDAEYEELPGGEQICPERQANIFSRIFFSWMN 244
+L V+ D M ++ E + + + + R+F W
Sbjct: 21 ILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMS----KDAVSGTL-RLF--WT- 70
Query: 245 PLMKKG---YEKFITEKDVWKLD-TWDQTETLNNQFQKCWAKESQRPKPWLLRALNSSLG 300
L+ K +KF+ ++V +++ + L + E ++P ++ +
Sbjct: 71 -LLSKQEEMVQKFV--EEVLRINYKF-----LMSP----IKTEQRQPS--MMTRMYIEQR 116
Query: 301 GRFWWGGFWKIGNDLSQFVG-----PLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGV 355
R + ND F +L Q++ + PA + ++ G
Sbjct: 117 DRLY--------NDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNV--------LIDG- 157
Query: 356 LCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASG----KITNLMTTDA--E 409
+ +G ++ + V +++ + + N + + E
Sbjct: 158 ----------V-LGSG-KTWVALDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 410 QLQQVCQALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTK 469
LQ++ + W++ ++ L + I + +++L
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHS---------------------IQAELRRL-- 237
Query: 470 EGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFI 529
L+ L+ +L NV+N + A F +C
Sbjct: 238 --LKSKPYENCLL--VL---L----------------NVQN---AKAWNA-FNLSC---- 266
Query: 530 LNSIPVLVTVVSFGMFTLLGGDLT-------PARAFT---SLSLFA-VLRFPLFMLPNMI 578
+L+T + L T + T SL L LP
Sbjct: 267 ----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320
Query: 579 TQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINL 638
+V+ N P + A SIR+G +WD ++N
Sbjct: 321 -EVLTTN---------------------PRRLSIIAESIRDGLATWD------NWKHVNC 352
Query: 639 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVP----QVSW 689
D T++I + L L P D +V + ++P + W
Sbjct: 353 D---------------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIW 396
Query: 690 IFNATVRDNILFGSAFE--------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 741
F+ D ++ + P +I + L +
Sbjct: 397 -FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLE--------------L 435
Query: 742 SGGQKQRVSMARAV---YSNSDVFIFDD-PLSALD----AHVGRQVFDRCIRGELSGKTR 793
+ ++ R++ Y+ F DD LD +H+G E R
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFR 494
Query: 794 VLVTNQLHFLSQVDRIILVHEGM-VKEEGTFEDLSNNGELFQK-LMENAGKMEEYVEEKE 851
++ + FL Q +I H+ G+ + + ++ + +N K E V
Sbjct: 495 MVFLD-FRFLEQ--KIR--HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 852 D 852
D
Sbjct: 550 D 550
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 7e-06
Identities = 98/692 (14%), Positives = 190/692 (27%), Gaps = 243/692 (35%)
Query: 2 AFKPLDWYCRPVAN---GVWTK-VVDNAFGAYTPCATDSLVVSVSHLILMGLCFYRIWLI 57
AF ++ C+ V + + +K +D+ + VS + + W +
Sbjct: 28 AFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDA-------VSGTLRL--------FWTL 71
Query: 58 --KKDFKVQRFCLKSKLYNYMLGFLAAYCTAE---PLFQLIMGISALDL---DGQSGLAP 109
K++ VQ+F + NY FL + E P M I D D Q A
Sbjct: 72 LSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK 128
Query: 110 F-----EILSLIIEALCWCSMLIMIFVETKVYIREFRWFVRFGVIYTLVGDAVMVNLILS 164
+ + + +AL +R + + GV+ + G + +
Sbjct: 129 YNVSRLQPYLKLRQALL--------------ELRPAKNVLIDGVLGS--GKTWVALDVCL 172
Query: 165 ---VKNFYNSSVLYLYMSEV--------IVQALFGLLLLVYVPELDPYPGYTPMRTELVD 213
V+ + + +L + ++Q L + + D +R +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQ 231
Query: 214 DAEYEELPGGEQICPERQANIFSRIFFSWMNPLMKKGYEKFITEKDVWKLDTWDQ----- 268
R+ S + +V W+
Sbjct: 232 AE-------------------LRRLLKSKPYE------NCLLVLLNVQNAKAWNAFNLSC 266
Query: 269 -----------TETLNNQFQKCWAKESQRP---KPWLLRALNSSLGGRFWWGGFWKIGND 314
T+ L+ + + + L L R D
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP---------QD 317
Query: 315 LS---QFVGPLLLNQLLQSMQQDGPA-WIGYIY----AFSIFVGVVLGVLCEA---QYFQ 363
L P L+ + +S+ +DG A W + + + + L VL A + F
Sbjct: 318 LPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 364 NVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHTLWS 423
+ +VF S I L +W
Sbjct: 377 RL-------------SVFPPSAHIPT--------------------------ILLSLIWF 397
Query: 424 APFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEG-----------L 472
+ + +V+ N+L SL+ +K KE
Sbjct: 398 DVIKSDVMVVV--NKLHKYSLV-------------------EKQPKESTISIPSIYLELK 436
Query: 473 QRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQN-------------VRNDELSWFRKA 519
+ + L I+ + K + ++ + + ++ FR
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 520 QFLAACN-SFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTS-LSLFAVLRF-PLFMLPN 576
FL + F+ I D T A S L+ L+F ++ N
Sbjct: 497 -FL---DFRFLEQKIR---------------HDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 577 --MITQVVNANVSLKRMEEFLLAEEKILLPNP 606
++VNA + +FL E+ L+ +
Sbjct: 538 DPKYERLVNA------ILDFLPKIEENLICSK 563
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 64/516 (12%), Positives = 136/516 (26%), Gaps = 181/516 (35%)
Query: 53 RIW----LIKKDFKVQRF----CLKSKLYNY----------MLGF----LAAYCTAEPLF 90
R++ + K V R L+ L +LG +A
Sbjct: 118 RLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 91 QLIM--GISALDLDGQSGLAPFEILSLIIEALC------WCSM------LIMIFVETKVY 136
Q M I L+L +P +L +++ L W S + + +
Sbjct: 177 QCKMDFKIFWLNL-KNCN-SPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 137 IREF---RWFVRFGVIYTLVGDAVMVNLILS-------VKNF-YNSSVLYLYMSEVIVQA 185
+R + + L L+L F + +L + +
Sbjct: 234 LRRLLKSKPYEN-----CL--------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 186 LFGLLLLVYVPELDPYPGYTPMRTE----LVDDAEYEELPGGEQIC---P---------- 228
L ++ TP + D ++LP ++ P
Sbjct: 281 L-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNPRRLSIIAESI 337
Query: 229 ---------------ERQANIFSRIFFSWMNP-LMKKGYEKF-ITEKDV----------W 261
++ I + + P +K +++ + W
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 262 KLDTWDQTETLNNQFQK-----CWAKESQ----------RPKPWLLRALNSSLGGRFWWG 306
+ N+ K KES + K AL+ S+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI------- 449
Query: 307 GFWKIGNDLSQFVGPLLLNQLLQSMQQDG---PAWIGYIYAFSIFVGVVLGVLCEAQYFQ 363
+ + + ++ D P Y Y+ +G L + +
Sbjct: 450 --------VDHY-------NIPKTFDSDDLIPPYLDQYFYS---HIGHHLKNIEHPERMT 491
Query: 364 NVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNL----------MTTDAEQLQQ 413
V R F + +I H++ ASG I N + + + ++
Sbjct: 492 LFRMVFLDFR-------FLEQ-KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 414 VCQAL--------HTLWSAPFRIIISLVLLYNELGV 441
+ A+ L + + ++ + L+ + +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 5e-14
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 689
+NL I G + ++G +G GKT+ + M+ L ++ V Y+P +S
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLR-MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 690 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
+F + TV +NI F R A ++ ++ L+ P
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 789
+SGGQ+QRV++ARA+ DV + D+PLS LDA + + R E+
Sbjct: 141 ----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM-----RAEIKKLQQKL 191
Query: 790 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 829
T + VT H QV DRI +++ G + + G+ ++
Sbjct: 192 KVTTIYVT---H--DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 6e-14
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 676
L I+L + G V+I+G +G GK++L+ +LG L P V + ++
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 677 IR-GTVAYVPQVSWIFN----ATVRDNI----LFGSAFEPARYEKAIDVTS---LQHDLD 724
+R + +V Q T +N+ L + E+ + S L L
Sbjct: 79 LRNRKLGFVFQF---HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS 135
Query: 725 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 784
P +SGG++QRV++ARA+ + + D+P LD+ ++V D I
Sbjct: 136 RKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--I 182
Query: 785 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 820
++ G + V+VT++ R + + +G V E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 7e-12
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E++ R +L G+S ++ + V I+G +G+GKS++L L + G++
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 1299 IDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSEHS 1341
++G ++ L LR + LG + Q L P
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQF---------HYLIPELTALENVIVPMLKMGKP 113
Query: 1342 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
EA ER + + LGL ++S S G++Q ++++RAL +L DE
Sbjct: 114 KK---EAKERG--EYLLSE--LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 1402 ATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
T +D + I E +++++ H R L + G+V+
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGT--SIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 6e-14
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 53/226 (23%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 689
++ ++ G VA++G +G GKT+ + ML + + V +P +V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLL-MLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79
Query: 690 IF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 735
+F + TV +NI F + R + + + LD P
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT------- 132
Query: 736 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 789
+SGGQ+QRV++ARA+ V +FD+PLS LDA++ + R E+
Sbjct: 133 ----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM-----RAEIKHLQQEL 183
Query: 790 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 829
G T V VT H Q RI + ++G + + GT +++ ++
Sbjct: 184 GITSVYVT---H--DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 45/221 (20%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIRGTVAYVP----Q 686
+I+L + G ++ I+G +G GKT+L+ + G P +S + I +P +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81
Query: 687 VSWIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 732
+ ++ + TV NI +G +A E R E +++T + P
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH---- 137
Query: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---- 788
+SGGQ+QR ++ARA+ + ++ + D+P SALD + RQ IR ++
Sbjct: 138 -------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ-----IREDMIAAL 185
Query: 789 --SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
+GK+ V V+ ++ L DRI ++ +G + + + +L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 56/253 (22%)
Query: 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----E 1291
+ ++ + ++ PVL+ +S ++ P + + I+G +G GK+ TL R + +
Sbjct: 2 TAALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKT----TLLRCLAGFEQ 55
Query: 1292 LERGRILIDGFDIAKFGLM---DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDA 1343
+ G I + G I R++ G + Q VLF + + L + A
Sbjct: 56 PDSGEISLSGKTIFSKNTNLPVRERRL-GYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTA 113
Query: 1344 DLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 1399
LE + + R ++S G GQ+Q +L+RAL ++++L
Sbjct: 114 QERQRIEAMLELTGISELAGR----YPHELS--G-----GQQQRAALARALAPDPELILL 162
Query: 1400 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLD 1447
DE +A+D + +++ IRE+ + + + D DRI ++
Sbjct: 163 DEPFSALDEQ----LRRQIREDMIA-----ALRANGKSAVFVSHDREEALQYADRIAVMK 213
Query: 1448 SGRVLEYDTPEEL 1460
GR+L+ +P EL
Sbjct: 214 QGRILQTASPHEL 226
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 40/230 (17%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDL 1312
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1313 RKILGIIPQSPVLFSGTVRFNLDPFSEH-------SDADLW-------EALERAHLKDAI 1358
R+ +G++ Q FNL P H + A + +A +A + +
Sbjct: 99 REEVGMVFQR---------FNLFP---HMTVLNNITLAPMKVRKWPREKAEAKA--MELL 144
Query: 1359 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 1415
+ +GL + ++ S GQ Q ++++RAL KI++ DE T+A+D V + L
Sbjct: 145 DK--VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG-EVL-- 199
Query: 1416 KTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+++ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 678
L IN+ I G +V ++G +G GK++ + + L +R
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 679 GTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 734
V V Q FN TV +NI P + K + ++LL D +
Sbjct: 100 EEVGMVFQR---FNLFPHMTVLNNITLA----PMKVRKWPREKAEAKAMELL---DKVGL 149
Query: 735 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 790
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
T V+VT+++ F +V DR++ + G + EEG EDL +
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 5e-13
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 40/215 (18%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 689
N++L + G I+G TG GKT + ++ ++ G V + +++
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLE-LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 690 IF-------NATVRDNILFG----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 738
++ + V+ N+ FG +P R ++H LD P
Sbjct: 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---------- 126
Query: 739 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 792
+SGG++QRV++ARA+ +N + + D+PLSALD R LS T
Sbjct: 127 -TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-----REMLSVLHKKNKLT 180
Query: 793 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 826
+ +T +Q DRI +V +G + + G E++
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 8e-08
Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 66/251 (26%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELER 1294
I+ E + +++ L LS + + I+G TGAGK+ ++ +
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKT----LFLELIAGFHVPDS 54
Query: 1295 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNL--------DPFSEHS 1341
GRIL+DG D+ DL I + Q+ LF V+ NL +
Sbjct: 55 GRILLDGKDVT-----DLSPEKHDI-AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV 108
Query: 1342 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 1401
+ ++ + RN +S G G++Q ++L+RAL+ KIL+LDE
Sbjct: 109 L----DTARDLKIEHLLDRNP----LTLS--G-----GEQQRVALARALVTNPKILLLDE 153
Query: 1402 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSG 1449
+A+D R Q+ RE + + T++ D DRI ++ G
Sbjct: 154 PLSALDPR----TQENAREMLSV-----LHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
Query: 1450 RVLEYDTPEEL 1460
++++ PEE+
Sbjct: 205 KLIQVGKPEEI 215
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 8e-13
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 59/232 (25%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV-------AYVP-- 685
++L++ G + ++G +G GKT+ + M+ L S I + +VP
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLR-MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 686 --QVSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHDLDLLPGG 729
++ +F + TV DNI F E R + ++ L L+ P
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR- 138
Query: 730 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 789
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++ R EL
Sbjct: 139 ----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM-----RAELK 183
Query: 790 ------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 829
G T + VT H QV DRI +++ G++++ G+ +++ +
Sbjct: 184 KLQRQLGVTTIYVT---H--DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 633 LLNINLDIPVGSLVAIVGGTGEGKTSLI------------------------SAMLGELP 668
L ++L G +++I+G +G GK++ + G+L
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 669 PVSDAS-AVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDL 723
++R + V Q FN TV +N++ P + + + L
Sbjct: 82 VADKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEA----PIQVLGLSKHDARERAL 134
Query: 724 DLLPGGDVTEIGERG-----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 778
L I ER V++SGGQ+QRVS+ARA+ DV +FD+P SALD + +
Sbjct: 135 KYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 779 VFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
V ++ +L GKT V+VT+++ F V +I +H+G ++EEG E + N
Sbjct: 192 VLR-IMQ-QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 54/243 (22%)
Query: 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--- 1311
VL G+S D + I+G +G+GKS+ L + + + G I+++G +I D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1312 ----------LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------RA 1352
LR L ++ Q FNL +S + LE
Sbjct: 81 KVADKNQLRLLRTRLTMVFQH---------FNL--WSHMT------VLENVMEAPIQVLG 123
Query: 1353 HLKDAIRRNSLGLDAQV--SEAGENF-----SVGQRQLLSLSRALLRRSKILVLDEATAA 1405
K R +L A+V E + S GQ+Q +S++RAL +L+ DE T+A
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
Query: 1406 VD---VRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1460
+D V + L + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 184 LDPELVG-EVL--RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
Query: 1461 LSN 1463
N
Sbjct: 241 FGN 243
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 2e-12
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313
+L+ + + + GI G G GKS TL R I + F +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKS----TLMRA---------IANGQVDGFPTQEEC 495
Query: 1314 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL-DAQVSEA 1372
+ + + S T LD + + L G D ++
Sbjct: 496 RTVYVEHDIDGTHSDTSV--LD--FVFESGVGTKEAIKDKL------IEFGFTDEMIAMP 545
Query: 1373 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 1432
S G + L+L+RA+LR + IL+LDE T +D A + + T + I+H
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
Query: 1433 R---LNTIIDCDRILLLDSGRVLEY 1454
L+ + C+ I+ + ++ +Y
Sbjct: 604 DSVFLDNV--CEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 3e-09
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 629 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 688
+ L L + I G G GK++L+ A+ R YV
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR--TVYVEHDI 504
Query: 689 WIFNA--TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 746
++ +V D + + L G I +SGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDK---------LIEF-GFTDEMIAMPISALSGGWK 554
Query: 747 QRVSMARAVYSNSDVFIFDDPLSALD 772
++++ARAV N+D+ + D+P + LD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-06
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 1339 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG--ENFSVGQRQLLSLSRALLRRSKI 1396
E + + L R +++ LGLD ++ S GQ+ L L+ +R +
Sbjct: 865 EALASGQFRPLTRKEIEEHCSM--LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL 922
Query: 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLE 1453
+VLDE T +D + + K ++ EF+ ++II H + + + + GR+
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALK-EFE-GGVIIITHSAEFTKNL--TEEVWAVKDGRMTP 978
Query: 1454 YD 1455
Sbjct: 979 SG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 6e-06
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
+K ++ +Y P + ++F S ++ ++G GAGKS+++N L + G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 16/229 (6%)
Query: 589 KRMEEFLLAEEKILLPNPPLTSGL-----PAISIRNGYFSWDSKAERPTLLNINLDIPVG 643
K EE + + P P G+ + + N F + +P + +IN +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGT-SKPQITDINFQCSLS 699
Query: 644 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQVSWIFNATVRDNIL 700
S +A++G G GK++LI+ + GEL P + V +AY+ Q + ++ L
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHENCRIAYIKQHA----FAHIESHL 753
Query: 701 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760
+ E ++ D + + G +R++ + +
Sbjct: 754 DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN 813
Query: 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 809
+ ++ + + + + + V +
Sbjct: 814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVE-SHSKMVAEV 861
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 740 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 799
+SGGQK ++ +A + + + D+P + LD + ++ E G +++T+
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALK-EFEG-GVIIITHS 957
Query: 800 LHFLSQV-DRIILVHEGMVK 818
F + + + V +G +
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-11
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 67/226 (29%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSL---------ISAMLGELP----PVSDASAVIRGTV 681
+INLDI G V VG +G GK++L I++ G+L ++D RG V
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS--GDLFIGEKRMNDTPPAERG-V 77
Query: 682 AYVPQVSWIFN-A-----TVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPG 728
V Q + A +V +N+ FG A R + +V L H LD P
Sbjct: 78 GMVFQ-----SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 729 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 788
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q+ R E+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-----RIEI 176
Query: 789 S------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGT 822
S G+T + VT H QV D+I+++ G V + G
Sbjct: 177 SRLHKRLGRTMIYVT---H--DQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 742 SGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 795
SGG++ + +A + + I D+P LD R++ R +L
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 796 VTNQLHFLSQVDRIILVHEGMVKEEGT 822
V++ D +I + E G+
Sbjct: 310 VSHDEELKDAADHVIRIS----LENGS 332
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1623 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-78 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-57 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-75 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-54 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-70 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-47 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-69 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-53 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-65 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-49 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-62 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-62 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-38 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-37 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-35 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-35 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-30 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-07 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 7e-07 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 0.003 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 8e-07 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.003 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-05 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 256 bits (655), Expect = 6e-78
Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 2/246 (0%)
Query: 1230 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 1289
P G I + V +Y P+L ++ +I + V VG +G GKS+++N + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 1290 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-DPFSEHSDADLWEA 1348
++ G+ILIDG +I F LR +G++ Q +LFS TV+ N+ +D ++ EA
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
+ A+ D I G D +V E G S GQ+Q LS++R L IL+LDEAT+A+D+
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 1409 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
++++IQ+ + K T LI+AHRL+TI D+I+++++G ++E T EL++ +G ++
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG-AY 246
Query: 1469 SKMVQS 1474
+
Sbjct: 247 EHLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 196 bits (500), Expect = 3e-57
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 15/246 (6%)
Query: 606 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 665
P+ I I + F ++ E P L +INL I G VA VG +G GK++LI+ +
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 666 ELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEK 712
S + +R + V Q + +F+ TV++NIL G +
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 713 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 772
A + + + LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 773 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 832
+ + + +T ++V ++L ++ D+I+++ G + E GT +L
Sbjct: 187 LESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 245
Query: 833 FQKLME 838
++ L
Sbjct: 246 YEHLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 247 bits (632), Expect = 5e-75
Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 3/241 (1%)
Query: 1236 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 1295
+G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++ G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1296 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEALERAH 1353
IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA A+
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1414 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1473
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G ++++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG-VYAQLHK 249
Query: 1474 S 1474
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 188 bits (480), Expect = 2e-54
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 16/239 (6%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
+ RN F++ + E P L NINL IP G VA+VG +G GK+++ S +
Sbjct: 13 DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 674 SAV------------IRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSL 719
+ +R VA V Q +FN TV +NI + + + E+A +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 720 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
++ + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD R +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 780 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 838
+ +T +++ ++L + Q D I++V +G++ E GT +L ++ +L +
Sbjct: 192 QA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 234 bits (597), Expect = 2e-70
Identities = 81/237 (34%), Positives = 140/237 (59%), Gaps = 1/237 (0%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDA 1357
IDG D+A LR+ +G++ Q VL + ++ N+ + S + A + A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1418 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
+ + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 168 bits (426), Expect = 2e-47
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I+ RN F + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQ 59
Query: 675 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQ 720
+I G V V Q + + N ++ DNI + + A +
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
+ L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNGELFQKLME 838
+ G+T +++ ++L + DRII++ +G + E+G ++L S L+ L +
Sbjct: 180 RN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 230 bits (587), Expect = 6e-69
Identities = 73/248 (29%), Positives = 135/248 (54%), Gaps = 8/248 (3%)
Query: 1233 WPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 1290
G ++F+DV Y RP+ VL GL+FT+ P + +VG G+GKS++ L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1291 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEA 1348
+ G++L+DG + ++ L + + + Q P +F +++ N+ + + ++ A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 1408
++ I G D +V EAG S GQRQ ++L+RAL+R+ +L+LD+AT+A+D
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 1409 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1466
+ +++ + E E S ++L+I L+ + D IL L+ G + E T ++L+ +G
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG- 243
Query: 1467 SFSKMVQS 1474
+ MVQ+
Sbjct: 244 CYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 185 bits (472), Expect = 2e-53
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
+ ++ F++ ++ + L + + G + A+VG G GK+++ + + P
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 674 ------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSL 719
+ VA V Q +F ++++NI +G +P E A +
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 720 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
+ LP G TE+ E G +SGGQ+Q V++ARA+ V I DD SALDA+ QV
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 780 FDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 838
E ++ +L+T L + Q D I+ + G ++E GT + L + +++
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 220 bits (562), Expect = 1e-65
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHLKD 1356
IDG I L + R +G + Q + +GT+R NL E ++D DLW+ L+ A +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 1416
+ L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1417 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474
+ K T L+IAHRL+TI+D D+I ++ G++ EL++ ++K V
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP-LYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 174 bits (443), Expect = 1e-49
Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 669
+S R+ F++D L +I+ + S++A G +G GK+++ S + P
Sbjct: 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 670 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQ 720
+ + S R + +V Q S I T+R+N+ +G + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 780
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 781 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 838
+ + + G+T +++ ++L + D+I + +G + G +L L+ K +
Sbjct: 180 -KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 213 bits (543), Expect = 1e-62
Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 3/268 (1%)
Query: 586 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIPVG 643
+ ++ + F LL ++G S FS P L NINL+I G
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 644 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGS 703
++AI G TG GKTSL+ +LGEL S+ G V++ Q SWI T+++NI+FG
Sbjct: 63 EMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGV 121
Query: 704 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 763
+++ RY+ + LQ D+ D T +GE GV +SGGQ+ R+S+ARAVY ++D+++
Sbjct: 122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 764 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 823
D P LD QVF+ C+ ++ KTR+LVT+++ L + D+I+++H+G GTF
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF 241
Query: 824 EDLSNNGELFQKLMENAGKMEEYVEEKE 851
+L + F + +++ EE+
Sbjct: 242 SELQSLRPDFSSKLMGYDTFDQFTEERR 269
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 210 bits (537), Expect = 7e-62
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 1215 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 1274
EL + +SN ++ F + L P VL ++ I + + I G
Sbjct: 18 ELLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGS 70
Query: 1275 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 1334
TG+GK+S+L + +E G I G + Q + GT++ N+
Sbjct: 71 TGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENI 117
Query: 1335 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 1394
+ + ++ L+ I + + + + E G S GQR +SL+RA+ + +
Sbjct: 118 IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177
Query: 1395 KILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1453
+ +LD +DV T + + + + + + T +++ ++ + D+IL+L G
Sbjct: 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 237
Query: 1454 YDTPEELLSNEGSSFSKMVQS 1474
Y T EL S SK++
Sbjct: 238 YGTFSELQSLRPDFSSKLMGY 258
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 141 bits (357), Expect = 3e-38
Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 12/236 (5%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+K E++ R+ ++ L+ TI + + ++G +G GK++ L + + E GRI
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 1357
D+ L + + ++ QS ++ TV N+ + E +R + A
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV--RWA 120
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
L ++ ++ S GQRQ ++++RA++ +L++DE + +D + ++
Sbjct: 121 AEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 1418 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470
I++ + T + + H + DRI +++ G++L+ +P E+ S F
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 110 bits (277), Expect = 1e-27
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
+ + N + + +NL I G + ++G +G GKT+ + + G P ++
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEG 61
Query: 674 SAVIRGT-----------VAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEKAI 714
++ V Q ++ + TV +NI F + R A
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
++ ++ L+ P +SGGQ+QRV++ARA+ DV + D+PLS LDA
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 775 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+ + + ++ +L T + VT+ + DRI +++ G + + G+ ++
Sbjct: 171 LRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 140 bits (355), Expect = 5e-38
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 28/237 (11%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ +DV R L LS + + + +VG GAGKS++L + + +G I
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 56
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSGTVRFNLDPF-SEHSDADLWEALERAHLKD 1356
G + + L + Q F+ V L + + +L + A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---- 112
Query: 1357 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVR 1409
L LD ++ + S G+ Q + L+ +L+ ++L+LDE ++DV
Sbjct: 113 ------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 1410 TDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ + K + + +++ +H LN + R LL G++L EE+L+
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 93.5 bits (232), Expect = 1e-21
Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 33/227 (14%)
Query: 628 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAV- 676
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 69
Query: 677 IRGTVAYVPQVSWI-FNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 733
+ AY+ Q F V + +L L
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN----- 124
Query: 734 IGERGVNISGGQKQRVSMARAVYS-------NSDVFIFDDPLSALDAHVGRQVFDRCIRG 786
+SGG+ QRV +A V + + D+P+++LD +
Sbjct: 125 ------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 787 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGEL 832
G V+ ++ L+ + R L+ G + G E++ L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 139 bits (352), Expect = 2e-37
Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 13/241 (5%)
Query: 1239 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
IK ++ + + L+ +S +P G++G +GAGKS+++ + + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1297 ILIDGFDIAKFGLMD---LRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERA 1352
+L+DG ++ + R+ +G+I Q L S TV N+ E + E R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
+ + +GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T
Sbjct: 122 --TELLSL--VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 1413 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469
I + +++ T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
Query: 1470 K 1470
+
Sbjct: 238 Q 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 103 bits (259), Expect = 4e-25
Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 615 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
I + N + L N++L +P G + ++G +G GK++LI + P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 672 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFE-------PARY 710
R + + Q + + + TV N+ + R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 711 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
+ + + L D P N+SGGQKQRV++ARA+ SN V + D+ SA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 771 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 828
LD R + + G T +L+T+++ + ++ D + ++ G + E+ T ++ +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 829 N 829
+
Sbjct: 231 H 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 134 bits (340), Expect = 1e-35
Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
+ D+ RY VL G+S D + I+G +G+GKS+ L + + + G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1299 IDGFDIAKFGLMD-------------LRKILGIIPQSPVLFSG-TVR-FNLDPFSEHSDA 1343
++G +I D LR L ++ Q L+S TV ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 1344 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 1403
+A ERA + + + AQ S GQ+Q +S++RAL +L+ DE T
Sbjct: 121 SKHDARERA--LKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 1404 AAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1461
+A+D + + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
Query: 1462 SN 1463
N
Sbjct: 238 GN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 106 bits (266), Expect = 6e-26
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 671
+ + + + + L ++L G +++I+G +G GK++ + + P
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 672 ----------------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPA 708
+ ++R + V Q + + TV +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 709 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 766
+ + + +SGGQ+QRVS+ARA+ DV +FD+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 767 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 825
P SALD + +V + GKT V+VT+++ F V +I +H+G ++EEG E
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 826 LSNN 829
+ N
Sbjct: 236 VFGN 239
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 133 bits (335), Expect = 2e-35
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 10/235 (4%)
Query: 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
G++ +D+ R + +L G+SF I + G++G GAGK++ L + +++ G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1297 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 1355
+ + G ++ ++RK++ +P+ + L + + E E +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV--E 115
Query: 1356 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 1415
A GL ++ + +S G + L ++RAL+ ++ +LDE T+ +DV ++
Sbjct: 116 RATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1416 KTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468
K +++ + T+L+ +H + + CDRI L+ +G ++E T EEL +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 106 bits (265), Expect = 5e-26
Identities = 50/251 (19%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
A+ +++ ++ L I+ +I G + ++G G GKT+ + + + P S
Sbjct: 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 672 ---------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAI 714
+ +R ++Y+P+ + + N + + F + F E+A
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 715 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774
++ L + S G +++ +ARA+ N + I D+P S LD
Sbjct: 119 EIAGLGEKIKDRVST-----------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 775 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN---- 829
R+V + G T ++ ++ + + + DRI L+H G + E GT E+L
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
Query: 830 --GELFQKLME 838
E+F+++++
Sbjct: 228 NIEEVFEEVVK 238
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (332), Expect = 6e-35
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 1239 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 1296
IK ++V Y E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1297 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD---PFSEHSDADLWEA 1348
+ ID +L KI +G + Q L T N++ F E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1349 LERAHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
+RA + L+ + + S GQ+Q ++++RAL I++ D+ T A+D
Sbjct: 122 RKRALECLKM----AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1408 VRTDALIQKTIREEFKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457
+T I + +++ + T++++ H +N +RI+ L G V +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 1e-28
Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 615 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
I ++N ++ E L N+NL+I G V+I+G +G GK+++++ + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 672 --------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDV 716
+ + + R + +V Q + T +N+ F+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 717 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
+ + + + +SGGQ+QRV++ARA+ +N + + D P ALD+ G
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 777 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822
++ + + E GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 182 EKIMQLLKKLNEED-GKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 125 bits (315), Expect = 2e-32
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ E++V + L G+S ++ D I+G G+GKS+++N + ++ + GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1299 IDGFDIAKFGLMDL-RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERA 1352
+ DI +L + Q+P TV NL E L+
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1353 HLKDAIRR-----NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1407
++ + + L L S GQ +L+ + RAL+ K++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1408 VRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
I + E + K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 101 bits (253), Expect = 3e-24
Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 24/219 (10%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 681
+++ + G + I+G G GK++LI+ + G L + + + +
Sbjct: 22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81
Query: 682 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD--------LDLLPGGDVT 732
Q TV +N+L G ++ +L ++
Sbjct: 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141
Query: 733 EIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 791
+ +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ + + G
Sbjct: 142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGI 201
Query: 792 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
T +++ ++L + D + ++ G + EG E+ N
Sbjct: 202 TFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 121 bits (306), Expect = 2e-31
Identities = 43/234 (18%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297
++ DV + + +S + + + ++G +G GK++ L + + E RG+I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1298 LIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERA 1352
I +A + ++ QS L+ + N+ + E +R
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
++ LGL ++ S GQRQ ++L RA++R+ ++ ++DE + +D +
Sbjct: 121 --REVAEL--LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 1413 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
++ +++ T + + H + DRI +++ G + + +P+E+
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 93.1 bits (231), Expect = 2e-21
Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 20/232 (8%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 673
+ + + + + E + ++L++ G + ++G +G GKT+ + + G P S
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRG 58
Query: 674 SAVIRGTV-------AYVPQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQ 720
I + +VP + L+ + P + K Q
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 721 HDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
++ +TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 780 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+ G T + VT+ + DRI +++ G++++ G+ +++ +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 121 bits (304), Expect = 4e-31
Identities = 48/232 (20%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ + + + Y + G+ +P V ++G GAGK++ L+ + +V ++G+I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1299 IDGFDIAKFGLMDLRKI-LGIIPQSPVLFSG-TVRFNL--DPFSEHSDADLWEALERAHL 1354
+G DI + ++ + ++P+ +F TV NL ++ + LE
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
L ++ + G S G++Q+L++ RAL+ R K+L++DE + + + +
Sbjct: 125 L------FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1415 QKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464
+ I++ + T+L++ + +L++G+++ ELL NE
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 105 bits (264), Expect = 8e-26
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%)
Query: 635 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDASAVIRGT 680
I+L +P G +V ++G G GKT+ +SA+ G + G
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 681 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 740
TV +N++ G+ + D+ + L + + G
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLGGT 139
Query: 741 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 800
+SGG++Q +++ RA+ S + + D+P L + +VF+ + G T +LV
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 801 HFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+V ++ G + EG +L +N
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 1e-30
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 12/236 (5%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ ++V + V ++ I + V VG +G GKS++L + + + G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERAHLKDA 1357
I + + +G++ QS L+ N+ + + A +R
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV--NQV 114
Query: 1358 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 1417
L L + + S GQRQ +++ R L+ + +LDE + +D ++
Sbjct: 115 AEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 1418 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470
I + TM+ + H + D+I++LD+GRV + P EL F
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 3e-23
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 34/235 (14%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 669
+ ++N +W E +INLDI G V VG +G GK++L+ + G
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 670 -----VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAIDV 716
+ + V V Q ++ + +V +N+ FG R + +V
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 717 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 776
L H LD P +SGGQ+QRV++ R + + VF+ D+PLS LDA +
Sbjct: 118 LQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 777 RQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
Q+ R + G+T + VT+ + D+I+++ G V + G +L +
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 118 bits (296), Expect = 1e-30
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
++ D+ + Y PVL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 3 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH-----SDADLWEALERA 1352
+G I ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 60 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 1353 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 1412
+ D ++ S G + + L+ LL ++I VLD+ A+D +
Sbjct: 115 EVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 1413 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 1446
+ K+I E K ++II+ R CD L
Sbjct: 163 KVLKSILEILKEKGIVIISSREELSY-CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 105 bits (262), Expect = 5e-26
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
+ IR+ +D +P L I + I G++V G G GKT+L+ + L P+
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 675 AV-------IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 726
++G + ++P+ + +V D + ++ + K +D L
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDAL 111
Query: 727 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 786
+V ++ ++ +S G +RV +A + N+++++ DDP+ A+D +V I
Sbjct: 112 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 787 ELSGKTRVLVTNQLHFLSQVDRIILVHE 814
L K V+++++ LS D +H+
Sbjct: 171 ILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (280), Expect = 4e-28
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I+ E + +++ L LS + + I+G TGAGK+ L + + GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1299 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDADLWEALERAH 1353
+DG D+ L + + + Q+ LF + F + + +
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1354 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 1413
++ + RN L L S G++Q ++L+RAL+ KIL+LDE +A+D RT
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1414 IQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1470
++ + + T+L I H DRI ++ G++++ PEE+
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 92.8 bits (230), Expect = 2e-21
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 674
I I + W + + L N++L + G I+G TG GKT + + G P S
Sbjct: 2 IEIESLSRKWKNFS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 675 AVI----------RGTVAYVPQVSWIF-NATVRDNILF----GSAFEPARYEKAIDVTSL 719
+ + +A+V Q +F + V+ N+ F +P R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 720 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 779
+H LD P + +SGG++QRV++ARA+ +N + + D+PLSALD
Sbjct: 118 EHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 780 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
+ + + T + +T+ + DRI +V +G + + G E++
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 110 bits (276), Expect = 2e-27
Identities = 49/232 (21%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 1298
I ++V ++ L ++ I ++ GI+G +GAGK++ + + + G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1299 IDGFDIAKFGLMDLRKI---LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL 1354
D +A G + + +G++ Q+ L+ T N+ + E +R
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-- 121
Query: 1355 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 1414
++ + L + ++ S Q+Q ++L+RAL++ +L+LDE + +D R
Sbjct: 122 EEVAKI--LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 1415 QKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
+ ++E T+L+++H I DR+ +L G++++ PE+L N
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.3 bits (213), Expect = 4e-19
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 671
I ++N + K + L N+N++I G I+G +G GKT+ + + G P +
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 672 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-------SAFEPARY 710
+ V Q + N T +NI F R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 711 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 770
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 771 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 828
LDA + G T ++V++ + + DR+ ++ +G + + G EDL +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 829 N 829
N
Sbjct: 231 N 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.5 bits (237), Expect = 3e-22
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 1259 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318
+ F + D ++G TGAGKS L + IV+ +RG + ++G DI L R+ +G
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGF 74
Query: 1319 IPQSPVLFSGTVRF--NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 1376
+PQ LF + + + K LG+ +
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARL 127
Query: 1377 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRL 1434
S G+RQ ++L+RAL+ + ++L+LDE +AVD++T ++ + +R +L + H L
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 1435 NTIID-CDRILLLDSGRVLEYDTPEELLSN 1463
D + ++ +GR++E +EL S
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.6 bits (201), Expect = 2e-17
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 634 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVA 682
LN++ ++ ++G TG GK+ + + G + P ++ RG +
Sbjct: 16 LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG-IG 73
Query: 683 YVPQVSWIFNA-TVRDNILFGSAFEPA-----RYEKAIDVTSLQHDLDLLPGGDVTEIGE 736
+VPQ +F +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 737 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVL 795
+SGG++QRV++ARA+ + + D+PLSA+D + + +
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 796 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 829
VT+ L + + D + ++ G + E+G ++L +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 78.9 bits (193), Expect = 3e-17
Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 28/186 (15%)
Query: 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 1327
K+ I G G GK++++ + + + + +I+ + + S
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1328 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 1387
S + +E +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1388 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 1447
A R K++++DE + ++ + I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1448 SGRVLE 1453
++E
Sbjct: 154 GAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.1 bits (126), Expect = 3e-08
Identities = 21/193 (10%), Positives = 40/193 (20%), Gaps = 21/193 (10%)
Query: 646 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 705
+ I G G GKT+L+ ++ L A V +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 706 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 765
+ + + A V I D
Sbjct: 61 S--------------KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 766 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 825
+ + R I + V V I + ++ E
Sbjct: 107 EIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP--- 162
Query: 826 LSNNGELFQKLME 838
N + + ++
Sbjct: 163 -ENRDVILEDILS 174
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 3e-07
Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 7/171 (4%)
Query: 1269 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 1328
V + G G GK+++++ +++ + + + G + + + + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1329 TVRFNLDPFS------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 1382
D +E L L++A + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1383 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1433
+ R L ++L + AL+++ + + +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 50.7 bits (119), Expect = 7e-07
Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 3/302 (0%)
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQ 360
G I N S LL LL + + ++L +
Sbjct: 16 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYI 75
Query: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALHT 420
+ V ++ T+ +F + + ++G + + +T D+EQ+
Sbjct: 76 SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALI 135
Query: 421 LWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISR-MQKLTKEGLQRTDKRI 479
II L ++ + ++L + + ++S+ + ++K +
Sbjct: 136 TVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT 195
Query: 480 GLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVT- 538
++L V + + + V N K ++ + I+ I L
Sbjct: 196 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALA 255
Query: 539 -VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLA 597
V+ F + LT S L PL L N+ Q + + + L +
Sbjct: 256 FVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315
Query: 598 EE 599
E+
Sbjct: 316 EQ 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 39.1 bits (89), Expect = 0.003
Identities = 28/318 (8%), Positives = 91/318 (28%), Gaps = 7/318 (2%)
Query: 902 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 961
+ ++ +K +++ + L + L D KT +
Sbjct: 8 WPTIAPFK------AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV 61
Query: 962 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 1021
++ + + IS + + + ++
Sbjct: 62 VIGLMILRGITSYISSYCISWVSGKVVMTMRR-RLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 1022 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREV 1081
D ++ + + V + S L ++ S + L++L + + ++
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 1082 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 1141
+ + ++ + A L + + + + + L M +
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 1142 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 1201
I I+ + A + + A T+ ++ S + + L ++ + + +
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 1202 NSLNAVERVGNYIELPSE 1219
+ A + + ++ E
Sbjct: 301 RGMAACQTLFAILDSEQE 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 50.7 bits (119), Expect = 8e-07
Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 10/305 (3%)
Query: 301 GRFWWGGFWKIGNDLSQFVGPLLLNQLLQSM-QQDGPAWIGYIYAFSIFVGVVLGVLCEA 359
R + I + PLL+ + + ++ +I +G+ L +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 360 QYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQALH 419
+ +R ++ + H + + + + V Q
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 420 TLWSAPFRIIISLVLLYNELGVASLLGALLLVFMFPVQTFIISRMQKLTKEGLQ------ 473
+ + I + + + L + L L + + F I + +
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 474 -RTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNS 532
+ G ++E + + VK +A E++ + L+ K A + +N+
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 533 IPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 590
+ + + V+ G + + G +T + +L PL L T + + S+ R
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 591 MEEFL 595
+ + +
Sbjct: 314 VFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 39.1 bits (89), Expect = 0.003
Identities = 36/327 (11%), Positives = 98/327 (29%), Gaps = 18/327 (5%)
Query: 902 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 961
+ + YK + + ++ + + + + Y D +
Sbjct: 6 LQFVKPYK------YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 962 LLSFGQVLVTLA---------NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGR 1012
++ G L Y +S + + + + F+ N +G+
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ 119
Query: 1013 IINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 1072
+I+R D+ + + ++ ++ + A + + +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 1073 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLV 1132
+ R++ R S + V E + G+S ++++ D A K + L
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 1133 NMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 1192
+ N + + V + + A + T+ + Y + L
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYL---AISGSITVGTLAAFVGYLELLFGPLRR 296
Query: 1193 VLRLASLAENSLNAVERVGNYIELPSE 1219
++ + S +++RV I+ +
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYD 323
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1623 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.96 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.88 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.82 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.56 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.36 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.27 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.1 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.97 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.9 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.63 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.59 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.57 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.31 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.16 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.42 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.35 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.99 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.8 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.73 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.57 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.26 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.23 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.71 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.68 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.66 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.88 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 93.73 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.68 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.36 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.13 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.09 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.05 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 93.0 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.79 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.73 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.64 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.6 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.6 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.58 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.56 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.44 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 92.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 92.16 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.89 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 91.86 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 91.62 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.59 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.53 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.38 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 91.33 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.33 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.32 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.25 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 91.15 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.06 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 90.99 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.96 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.93 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 90.86 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.73 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 90.66 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 90.59 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.54 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.5 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.41 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.29 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 90.29 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.08 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.08 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.97 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.95 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.92 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 89.88 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.76 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 89.57 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.52 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 89.41 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 89.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.35 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.33 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 89.28 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 89.2 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.19 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 89.04 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.9 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 88.84 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.77 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 88.55 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 88.51 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.44 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 88.35 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.29 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.25 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 88.22 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.04 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.01 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.0 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 87.97 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 87.9 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 87.81 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.8 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.67 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 87.52 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 87.39 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.97 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 86.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 86.83 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 86.8 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 86.8 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 86.78 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 86.78 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 86.76 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 86.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 86.61 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 86.56 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 86.48 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 86.35 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 86.28 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 86.25 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.24 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.15 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.12 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 85.92 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 85.86 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.82 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 85.81 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 85.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 85.74 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.6 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 85.48 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 85.46 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 85.45 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 85.33 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 85.21 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 85.17 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 85.09 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 84.7 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.53 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 84.51 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.51 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.47 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 84.46 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.37 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 84.27 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 84.16 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 84.07 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 84.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 84.01 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 83.99 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 83.94 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 83.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 83.82 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 83.79 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 83.77 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 83.55 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 83.42 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 83.38 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 83.38 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 83.27 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 83.16 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.14 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.1 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.05 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 83.04 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 82.96 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 82.95 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 82.94 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 82.83 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 82.82 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.82 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.79 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 82.63 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 82.49 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 82.41 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 82.33 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.23 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 82.13 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 82.13 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 82.13 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 82.04 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.92 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.88 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 81.88 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 81.72 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 81.65 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 81.65 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.6 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 81.46 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 81.4 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 81.31 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.15 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 81.15 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 81.1 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 81.05 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 81.04 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 81.0 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 80.98 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 80.92 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 80.7 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 80.62 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 80.52 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 80.51 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 80.51 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 80.5 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 80.46 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 80.35 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 80.25 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 80.1 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 80.1 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=485.54 Aligned_cols=238 Identities=34% Similarity=0.547 Sum_probs=229.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 28999789982799998311102686799978995579989545998860345488737999797369989587642058
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
+|+|+||+|+|+++.+++|+||||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 884777666665776037799-9999899999999328999986248950263029998894589999799964029969
Q 000351 1318 IIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1318 ~vpQdp~lf~gTIr~NLd~~~-~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~p~I 1396 (1623)
+|||+|.+|++||++|+.... ..++++++++++.+++.+++..+|.|+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
Q ss_conf 9995888899988799999999988399489996038013430398999959568430593678512899279999983
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1475 (1623)
Q Consensus 1397 LiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~~~~Ll~~~~~~f~~l~~~~ 1475 (1623)
||||||||+||+.|++.|.+.|++..+++|+|+||||++++..||||+||++|+|+|+|+|++|++++++.|++|++.+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 5564776555989999999999998589989999788999984999999989999998899999829987899999981
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=483.69 Aligned_cols=240 Identities=34% Similarity=0.561 Sum_probs=229.2
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99752899978998279999831110268679997899557998954599886034548873799979736998958764
Q 000351 1234 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 1313 (1623)
Q Consensus 1234 p~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1313 (1623)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+++++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred HCEEEECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 2058884777666665776037799-999989999999932899998624895026302999889458999979996402
Q 000351 1314 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1314 ~~i~~vpQdp~lf~gTIr~NLd~~~-~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr 1392 (1623)
++++||||+|.+|++|||+|+.... ..+|++++++++.+++.+++.++|.|||+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99699995888899988799999999988399489996038013430398999959568430593678512899279999
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1393 ~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~~~~Ll~~~~~~f~~l~ 1472 (1623)
+|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||||++|++|+|++.|+|++|+++ ++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868-84999999
Q ss_pred HH
Q ss_conf 98
Q 000351 1473 QS 1474 (1623)
Q Consensus 1473 ~~ 1474 (1623)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=475.76 Aligned_cols=240 Identities=35% Similarity=0.567 Sum_probs=228.7
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 97528999789982799998311102686799978995579989545998860345488737999797369989587642
Q 000351 1235 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 1314 (1623)
Q Consensus 1235 ~~g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1314 (1623)
..|.|+|+||+|+|++...++|+||||+|++||++|||||||||||||+++|.|+++|++|+|.+||.|+++++...+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 05888477766666577603779--9999989999999932899998624895026302999889458999979996402
Q 000351 1315 ILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1315 ~i~~vpQdp~lf~gTIr~NLd~~--~~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr 1392 (1623)
+++++||+|.+|++|+++|+... ...++++++++++.+++.++++.+|.||++.+++.|.+||||||||++|||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99699995888899988799999999988399489996038013430398999959568430593678512899279999
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1393 ~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~~~~Ll~~~~~~f~~l~ 1472 (1623)
+|+|||||||||+||++|++.|++.|++..+++|+|+||||++.+..||+|+||++|+|+|+|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HHH
Q ss_conf 983
Q 000351 1473 QST 1475 (1623)
Q Consensus 1473 ~~~ 1475 (1623)
+.+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=464.48 Aligned_cols=239 Identities=29% Similarity=0.476 Sum_probs=223.9
Q ss_pred CCCCCEEEEEEEEEECCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 997528999789982799-9983111026867999789955799895459988603454887379997973699895876
Q 000351 1234 PSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 1312 (1623)
Q Consensus 1234 p~~g~I~~~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1312 (1623)
+.+|.|+|+||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++...+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HHCEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4205888477766666577603779--99999899999999328999986248950263029998894589999799964
Q 000351 1313 RKILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1313 R~~i~~vpQdp~lf~gTIr~NLd~~--~~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARAL 1390 (1623)
|+++++|||+|.+|++||++|+... ...++.++.++++.+++.++++.+|.|+++.+++.|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 029969999588889998879999999998839--948999603801343039899995956843059367851289927
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1468 (1623)
Q Consensus 1391 Lr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~~~~Ll~~~~~~f 1468 (1623)
+++|+|||||||||+||+.++..|++.|++..+ ++|+|+||||++.+..||||+||++|+|+|.|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000351 1469 SKMVQ 1473 (1623)
Q Consensus 1469 ~~l~~ 1473 (1623)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=468.71 Aligned_cols=234 Identities=33% Similarity=0.564 Sum_probs=222.9
Q ss_pred EEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 89997899827999983111026867999789955799895459988603454887379997973699895876420588
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++||+|+|+++ +++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+++++.+.+|++|++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 8477766666577603779--99999899999999328999986248950263029998894589999799964029969
Q 000351 1319 IPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1319 vpQdp~lf~gTIr~NLd~~--~~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~p~I 1396 (1623)
|||+|.+|++|+++|+... ...++++++++++.+++.+++..+|.++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 999588889998879999999998839948999603801343039899995956843059367851289927999998
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1474 (1623)
Q Consensus 1397 LiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~~~~Ll~~~~~~f~~l~~~ 1474 (1623)
||||||||+||+.+++.|++.|++..+++|+|+||||++.+..||||+||++|+|+|.|+|+||+++ ++.|++++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-45 Score=405.31 Aligned_cols=229 Identities=31% Similarity=0.481 Sum_probs=210.2
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEE----------
Q ss_conf 9999991899836998189999983001115734996999990799994679998808866899874887----------
Q 000351 608 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------- 677 (1623)
Q Consensus 608 ~~~~~~~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~---------- 677 (1623)
.....+.|+++|++|+|++. ++++|+|+||+|++|++++|+|++|||||||+++|+|.++|++| .+.+
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG-QILIDGHNIKDFLT 87 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE-EEEETTEEGGGSCH
T ss_pred CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-CCCCCCEECCCCCH
T ss_conf 77778879999889995999-97606443899839989999889998099999999712786300-01539987530788
Q ss_pred ---CCCEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---391899816865676228999704999-9989999999980864688219999962006899856938999999999
Q 000351 678 ---RGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 678 ---~~~iay~~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLAR 753 (1623)
+..|+||+|+|++|++||+|||.+|.+ .++++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88634145651015689987999985158679999999999996979999736242010333888984999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHH
Q ss_conf 87029989998176667698889999999984520996899982796604303989998097799942956785168027
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 833 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 833 (1623)
|++.+|+|+|||||||+||+++++.|++. +..+.+++|+|+|||+++.+..||+|++|++|+|++.|++++|+++++.|
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~-l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEA-LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 98559989998376544797799999999-99875388899996899999859999999899999988999998688499
Q ss_pred HHHHHH
Q ss_conf 986885
Q 000351 834 QKLMEN 839 (1623)
Q Consensus 834 ~~~~~~ 839 (1623)
+.++..
T Consensus 247 ~~l~~~ 252 (255)
T d2hyda1 247 EHLYSI 252 (255)
T ss_dssp HHHHTT
T ss_pred HHHHHH
T ss_conf 999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-45 Score=401.42 Aligned_cols=224 Identities=29% Similarity=0.463 Sum_probs=206.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEC-------------CC
Q ss_conf 18998369981899999830011157349969999907999946799988088668998748873-------------91
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GT 680 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~-------------~~ 680 (1623)
.|+|+|++|+|+++ ++++|+|+||+|++|++++|+|++|||||||+++|+|.++|++| .+.+. ..
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~lr~~ 78 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDLALADPNWLRRQ 78 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHH
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCEEECCCCHHHHHCE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888-99999999440024655352
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 899816865676228999704999-9989999999980864688219999962006899856938999999999870299
Q 000351 681 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 681 iay~~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~ 759 (1623)
|+||+|+|++|++||+|||.++.+ .+.+++..+++.|.+.+++..+|.|++|.+|++|.+|||||||||+||||++++|
T Consensus 79 i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp EEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88982446557840003522357554388899999997557888763201344327878866988989875443444165
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHH
Q ss_conf 8999817666769888999999998452099689998279660430398999809779994295678516-802798688
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLME 838 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 838 (1623)
+|+|||||||+||+.+++.|++. +..+.+++|+|+|||+++.+..||+|++|++|+|+++|++++++++ ++.|..++.
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~ 237 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHH
T ss_pred CHHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
T ss_conf 13556477655598999999999-99985899899997889999849999999899999988999998299878999999
Q ss_pred HH
Q ss_conf 52
Q 000351 839 NA 840 (1623)
Q Consensus 839 ~~ 840 (1623)
.+
T Consensus 238 ~Q 239 (241)
T d2pmka1 238 LQ 239 (241)
T ss_dssp HH
T ss_pred HH
T ss_conf 81
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.6e-45 Score=399.22 Aligned_cols=227 Identities=30% Similarity=0.496 Sum_probs=210.0
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEC------------
Q ss_conf 99918998369981899999830011157349969999907999946799988088668998748873------------
Q 000351 611 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------ 678 (1623)
Q Consensus 611 ~~~~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~------------ 678 (1623)
..+.|+|+|++|+|++. +.++|+|+||+|++|++++|+|+||||||||+++|+|.++|++| .+.+.
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG-HILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE-EEEETTEETTTBCHHHH
T ss_pred CCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCCCCCHHHHHHH
T ss_conf 83079999889992999-97635332899859999999999998599999998621688846-89878801211106654
Q ss_pred -CCEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -9189981686567622899970499--9998999999998086468821999996200689985693899999999987
Q 000351 679 -GTVAYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 679 -~~iay~~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal 755 (1623)
..++|++|+|++|++|+++|+.++. ..+++++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||+
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred HHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20687995025447862024332057220899999999999817999973554410143488898499999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHH
Q ss_conf 02998999817666769888999999998452099689998279660430398999809779994295678516802798
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 835 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 835 (1623)
+.+|+|+|||||||+||+.+++.|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|+++|++++++++++.|++
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~ 246 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 246 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 54998899516444589889999999-99875227889999887999985999999989999998899999868939999
Q ss_pred HHHHH
Q ss_conf 68852
Q 000351 836 LMENA 840 (1623)
Q Consensus 836 ~~~~~ 840 (1623)
++..+
T Consensus 247 l~~~Q 251 (253)
T d3b60a1 247 LHKMQ 251 (253)
T ss_dssp HHHHT
T ss_pred HHHHC
T ss_conf 99972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-44 Score=390.51 Aligned_cols=226 Identities=26% Similarity=0.408 Sum_probs=203.8
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEC-------------
Q ss_conf 9918998369981899999830011157349969999907999946799988088668998748873-------------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR------------- 678 (1623)
Q Consensus 612 ~~~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~------------- 678 (1623)
.+.|+|+|++|+|+...+.++|+|+||+|++|++++|+|+||||||||+++|+|.++|++| .+.+.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G-~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG-QLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGBCHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCHHHHHHHH
T ss_conf 3369999989988999999767443899849989999999998499999998614378768-998899853110137888
Q ss_pred CCEEEECCCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 91899816865676228999704999--9989999999980864688219999962006899856938999999999870
Q 000351 679 GTVAYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 756 (1623)
Q Consensus 679 ~~iay~~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~ 756 (1623)
..++|++|+|++|++||+|||.+|.. .+.++...+.+.+++.+.++.+|+|++|.++++|.+|||||||||+||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHH
Q ss_conf 299899981766676988899999999845-2099689998279660430398999809779994295678516802798
Q 000351 757 SNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 835 (1623)
Q Consensus 757 ~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 835 (1623)
++|+|+|||||||+||+.+++.+++.+..- ...++|+|+|||+++.+..||+|++|++|+|+++|++++|+++++.|+.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 68707871675765685368999999999765069899999597999985999999989999998899999859758899
Q ss_pred HHH
Q ss_conf 688
Q 000351 836 LME 838 (1623)
Q Consensus 836 ~~~ 838 (1623)
+++
T Consensus 248 l~~ 250 (251)
T d1jj7a_ 248 MVQ 250 (251)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.5e-44 Score=393.61 Aligned_cols=223 Identities=26% Similarity=0.495 Sum_probs=204.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEE------------ECCCEE
Q ss_conf 89983699818999998300111573499699999079999467999880886689987488------------739189
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 682 (1623)
Q Consensus 615 I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~------------~~~~ia 682 (1623)
|+++|++|+|+. ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|.... .+..|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 981686567622899970499--999899999999808646882199999620068998569389999999998702998
Q 000351 683 YVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1623)
Q Consensus 683 y~~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~ 760 (1623)
||+|+|++|++||+||+.++. ..+++...++.+.+.+..++..+|++.+|.+|++|.+|||||||||+||||++.+|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
Q ss_conf 99981766676988899999999845209968999827966043039899980977999429567851680279868852
Q 000351 761 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 840 (1623)
Q Consensus 761 illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 840 (1623)
|+|||||||+||+.+++.+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|+++|++++|+++++.|+.++..+
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 999658865569889999988-7888717998999978799998499999998999999999999986896999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-43 Score=382.93 Aligned_cols=218 Identities=24% Similarity=0.366 Sum_probs=195.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 52899978998279999831110268679997899557998954599886034548873799979736998958764205
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
+.|.|+|+++.+ .|||+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| ++
T Consensus 37 ~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EE
T ss_conf 967999769899----7677375999859999999989998299999999579747882899999-------------99
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88847776666657760377999999899999999328999986248950263029998894589999799964029969
Q 000351 1317 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1317 ~~vpQdp~lf~gTIr~NLd~~~~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~p~I 1396 (1623)
+|+||+|.+|++||++|+.+.....+..++++++.+.+.+.+..+|.++++.+++.|.+||||||||++|||||+++|+|
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99816430267603214203334560579999999776999984612332355554237799999999999999869635
Q ss_pred EEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 999588889998879999999-9988399489996038013430398999959568430593678512899279999
Q 000351 1397 LVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1397 LiLDEpTs~LD~~Te~~I~~~-L~~~~~~~TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~~~~Ll~~~~~~f~~l~ 1472 (1623)
||||||||+||+.+++.+.+. +....+++|+|+||||++.+..||||++|++|+++++|+|+||++.. +.|.+..
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~-~~~~~~~ 255 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR-PDFSSKL 255 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC-HHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC-CHHHHHH
T ss_conf 133385544898999999999998862899999992528999859999999899999987899996059-4899987
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7e-45 Score=398.76 Aligned_cols=221 Identities=37% Similarity=0.655 Sum_probs=204.0
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCC
Q ss_conf 99189983699818999998300111573499699999079999467999880886689987488739189981686567
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 691 (1623)
Q Consensus 612 ~~~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~l~ 691 (1623)
...|.|+|++| . ++|+|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+.++++|++|.+|++
T Consensus 36 ~~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~i~~v~Q~~~l~ 109 (281)
T d1r0wa_ 36 ENNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSGRVSFCSQFSWIM 109 (281)
T ss_dssp ----CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEECCSCEEEECSSCCCC
T ss_pred CCCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEEEEEECCCCCC
T ss_conf 89679997698--9---97677375999859999999989998299999999579747882-899999999981643026
Q ss_pred CCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 62289997049999989999999980864688219999962006899856938999999999870299899981766676
Q 000351 692 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 771 (1623)
Q Consensus 692 ~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~illLDep~s~L 771 (1623)
++||+|||.+|..+++.++..+++.|.+..++..+|+++.+.++++|.+|||||||||+||||++.+|+|+|||||||+|
T Consensus 110 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 110 PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp SEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 76032142033345605799999997769999846123323555542377999999999999998696351333855448
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHH
Q ss_conf 9888999999998452099689998279660430398999809779994295678516802798688
Q 000351 772 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 838 (1623)
Q Consensus 772 D~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 838 (1623)
|+.+++.+++.++....+++|+|+|||+++.+..||+|++|++|++++.|+++||++..+.|...+.
T Consensus 190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 9899999999999886289999999252899985999999989999998789999605948999872
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.2e-41 Score=368.23 Aligned_cols=221 Identities=21% Similarity=0.349 Sum_probs=190.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 28999789982799998311102686799978995579989545998860345488737999797369989587642058
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|++. .+|+||||+|++||.+||+||||||||||++++.|++.|++|+|.+||.|+++.+.. |++|+
T Consensus 6 ~I~v~nlsk~yg~~--~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 49998799999999--998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88477766666-5776037799---9999899999999328999986248950263029998894589999799964029
Q 000351 1318 IIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1318 ~vpQdp~lf~g-TIr~NLd~~~---~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~ 1393 (1623)
+|||+|.+|+. |+++|+.... ..+.+++.+. ..+.++. .|++...+.....||||||||++|||||+.+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHH--TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHH--CCCHHHHCCCHHHCCHHHHHHHHHHHHHCCC
T ss_conf 98003353422209999999998739999999999-----9999987--5985566099546999998899997664049
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 96999958888999887999999999883-9-9489996038013430-398999959568430593678512899279
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1469 (1623)
Q Consensus 1394 p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~-~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~~~~~f~ 1469 (1623)
|+||+|||||++||+.+...+++.|++.. + ++|+|+|||+++.+.. ||||++|++|+|++.|+|+++.+++...|.
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 9824306886668989998999999999873198079994899999986999999989999998599999868999899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-41 Score=369.46 Aligned_cols=215 Identities=22% Similarity=0.345 Sum_probs=189.5
Q ss_pred EEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 89997899827999983111026867999789955799895459988603454887379997973699895876420588
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++||+++|++. .+|+|+||+|++||.+||+||||||||||++++.|++.|++|+|.+||.|+.+.+. .|++|++
T Consensus 1 Iev~nv~k~yg~~--~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 9999999998999--99811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---C----CHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8477766666-57760377999---9----99899999999328999986248950263029998894589999799964
Q 000351 1319 IPQSPVLFSG-TVRFNLDPFSE---H----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 1390 (1623)
Q Consensus 1319 vpQdp~lf~g-TIr~NLd~~~~---~----~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARAL 1390 (1623)
|||+|.+|+. |+++|+..... . .++.+.++++.+++.++.++. ...||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHHH
T ss_conf 433420264333788978999875998899999999999757886566489-----------656999999999999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 02996999958888999887999999999883--99489996038013430-3989999595684305936785128992
Q 000351 1391 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1467 (1623)
Q Consensus 1391 Lr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~~~~~ 1467 (1623)
+.+|++|+|||||++||+.+...|++.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred H
Q ss_conf 7
Q 000351 1468 F 1468 (1623)
Q Consensus 1468 f 1468 (1623)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.3e-41 Score=370.03 Aligned_cols=214 Identities=25% Similarity=0.373 Sum_probs=189.1
Q ss_pred EEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 89997899827999983111026867999789955799895459988603454887379997973699895876420588
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
|+++|++++|+. .+|+||||+|++||.+||+||||||||||+++|.|+..|++|+|.+||.|+.+++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8477766666-57760377----999999899999999328999986248950263029998894589999799964029
Q 000351 1319 IPQSPVLFSG-TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 1393 (1623)
Q Consensus 1319 vpQdp~lf~g-TIr~NLd~----~~~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~ 1393 (1623)
|||++.+|+. |+++|+.. .+...++++.++++.+++.+ ........||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH-----------HHHCCHHHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655-----------57589554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 96999958888999887999999999883--99489996038013430-39899995956843059367851289927
Q 000351 1394 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1468 (1623)
Q Consensus 1394 p~ILiLDEpTs~LD~~Te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~~~~~f 1468 (1623)
|+||+|||||++||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||++|.+|++++.|+|+++++++...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-41 Score=367.47 Aligned_cols=219 Identities=27% Similarity=0.447 Sum_probs=189.9
Q ss_pred EEEEEEEEEECCCCC--CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899978998279999--8311102686799978995579989545998860345488737999797369989587---64
Q 000351 1239 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 1313 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~---lR 1313 (1623)
|+++|++++|+.+.. .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCEEEECCCCCCCCC-CHHHHCCC---CCCCC----HHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
Q ss_conf 205888477766666-57760377---99999----98999999993289999862489502630299988945899997
Q 000351 1314 KILGIIPQSPVLFSG-TVRFNLDP---FSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp~lf~g-TIr~NLd~---~~~~~----d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~ 1385 (1623)
+++++|||+|.+|+. |+++|+.. ....+ ++.+.++++.+++.+. .......||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~-----------~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTT-----------TSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-----------HHCCHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035-----------54894349999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9996402996999958888999887999999999883-9-9489996038013430-39899995956843059367851
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~-~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~ 1462 (1623)
|||||+.+|++|++||||++||+.+...|++.|++.. + +.|+|+|||++..+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 289927
Q 000351 1463 NEGSSF 1468 (1623)
Q Consensus 1463 ~~~~~f 1468 (1623)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-41 Score=369.61 Aligned_cols=219 Identities=20% Similarity=0.323 Sum_probs=188.3
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 28999789982799998311102686799978995579989545998860345488737999797369989587----64
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LR 1313 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~----lR 1313 (1623)
.|+++||+++|++. ++|+|+||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~~--~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 18998699998999--9985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HCEEEECCCCCCCCC-CHHHHCCCC---CCCCHH----HHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHH
Q ss_conf 205888477766666-577603779---999998----999999993289999862489502630299988945899997
Q 000351 1314 KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 1385 (1623)
Q Consensus 1314 ~~i~~vpQdp~lf~g-TIr~NLd~~---~~~~d~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~ 1385 (1623)
+++++|||+|.+|+. |+++|+... ...+.+ .+.+.++.+++.++ .......||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~-----------~~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHH
T ss_conf 5512002212223101166763306877299989999999999987599667-----------62993349999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9996402996999958888999887999999999883-9-9489996038013430-39899995956843059367851
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1386 LARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~-~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~ 1462 (1623)
|||||+.+|+||+|||||++||+.+...|++.|++.. + +.|+|+|||+++.+.. ||||++|++|++++.|+|++++.
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCCHHH
Q ss_conf 2899279
Q 000351 1463 NEGSSFS 1469 (1623)
Q Consensus 1463 ~~~~~f~ 1469 (1623)
++...|-
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
T ss_conf 8999898
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.8e-41 Score=366.15 Aligned_cols=220 Identities=22% Similarity=0.330 Sum_probs=188.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 28999789982799998311102686799978995579989545998860345488737999797369989---587642
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 1314 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~---~~~lR~ 1314 (1623)
.|+++||+++|+.+...+|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHHCCCC---CCCCHH----HHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHH
Q ss_conf 05888477766666-577603779---999998----9999999932899998624895026302999889458999979
Q 000351 1315 ILGIIPQSPVLFSG-TVRFNLDPF---SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 1386 (1623)
Q Consensus 1315 ~i~~vpQdp~lf~g-TIr~NLd~~---~~~~d~----~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~L 1386 (1623)
++|+|||+|.+|+. |++||+... ...+.+ .+.++++.++ ++.........||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~p~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----------IHHVLNHFPRELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----------HHHHHHCCHHHCCHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999999986659-----------1766648954599999858998
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 996402996999958888999887999999999883--99489996038013430-398999959568430593678512
Q 000351 1387 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1463 (1623)
Q Consensus 1387 ARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~ 1463 (1623)
||||+.+|+||++||||++||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+++.++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHH
Q ss_conf 89927
Q 000351 1464 EGSSF 1468 (1623)
Q Consensus 1464 ~~~~f 1468 (1623)
+...|
T Consensus 232 P~~~~ 236 (242)
T d1oxxk2 232 PVSIQ 236 (242)
T ss_dssp CSSHH
T ss_pred CCCHH
T ss_conf 99979
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-40 Score=360.60 Aligned_cols=221 Identities=24% Similarity=0.354 Sum_probs=188.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 289997899827999983111026867999789955799895459988603454887379997973699895--------
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-------- 1309 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~-------- 1309 (1623)
.|+++|++++|++. ++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 69999789998999--9881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHHCEEEECCCCCCCCC-CHHHHCCC----CCCCCH----HHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCC
Q ss_conf -----8764205888477766666-57760377----999999----899999999328999986248950263029998
Q 000351 1310 -----MDLRKILGIIPQSPVLFSG-TVRFNLDP----FSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1375 (1623)
Q Consensus 1310 -----~~lR~~i~~vpQdp~lf~g-TIr~NLd~----~~~~~d----~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~ 1375 (1623)
...|+++++|||+|.+|+. |+++|+.. ....+. +.+.++++.+++.+... ......
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPVH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGGG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCCC
T ss_conf 1767999745448998332314110102136565787629998999999999999829952443----------068220
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEE
Q ss_conf 89458999979996402996999958888999887999999999883-99489996038013430-39899995956843
Q 000351 1376 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1453 (1623)
Q Consensus 1376 LSgGQrQrL~LARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive 1453 (1623)
||||||||++|||||+.+|++|+|||||++||+.+.+.|++.|++.. ++.|+|+|||+++.+.. ||||+||.+|+|+|
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCHHHHHHCCCCHHHH
Q ss_conf 05936785128992799
Q 000351 1454 YDTPEELLSNEGSSFSK 1470 (1623)
Q Consensus 1454 ~G~~~~Ll~~~~~~f~~ 1470 (1623)
.|+|+++++++...|.+
T Consensus 230 ~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EECHHHHHHSCCSHHHH
T ss_pred ECCHHHHHHCCCCHHHH
T ss_conf 84999998389999999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.6e-39 Score=350.37 Aligned_cols=219 Identities=25% Similarity=0.441 Sum_probs=191.2
Q ss_pred CCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 52899978998279999831110268679997899557998954599886034548873799979736998958764205
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 1316 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1316 (1623)
|.|+++|++++|+.. ++|+|+||+|++||.+||+||||||||||+++|.|++.|++|+|.++|.|+.+ ..+..|+++
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 978999589999999--99806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 888477766666-5776037799---999989999999932899998624895026302999889458999979996402
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1317 ~~vpQdp~lf~g-TIr~NLd~~~---~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr 1392 (1623)
+++||++.+|.. |++||+..+. ..++.++.+.++.. ++. .+++.........||||||||++||||++.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~--~~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHH--HCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHH--CCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 6750015468786677888989986179989999999999-----986--797888850453379989899999999865
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 996999958888999887999999999883-99489996038013430-39899995956843059367851289
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1465 (1623)
Q Consensus 1393 ~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~~~ 1465 (1623)
+|+||+|||||++||+.+.+.+++.|++.. .++|+|++||+++.+.. ||||++|++|++++.|+|+++.++..
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-39 Score=352.17 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=175.9
Q ss_pred EEEEEEEEEECCCCC--CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899978998279999--83111026867999789955799895459988603454887379997973699895876----
Q 000351 1239 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 1312 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~l---- 1312 (1623)
|+++||+++|+.+.. .+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCEEEECCCCCCCCC-CHHHHCCC---C---CCCCHHH----HHHHHHHHCHHHHHHHCCCCCCHH-HHCCCCCCCHHH
Q ss_conf 4205888477766666-57760377---9---9999989----999999932899998624895026-302999889458
Q 000351 1313 RKILGIIPQSPVLFSG-TVRFNLDP---F---SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQ 1380 (1623)
Q Consensus 1313 R~~i~~vpQdp~lf~g-TIr~NLd~---~---~~~~d~~----i~~aL~~~~l~~~i~~lp~gLdt~-v~e~g~~LSgGQ 1380 (1623)
|++|++|+|+|.+|+. |+++|+.. + ...+.++ +.+.++.+ ||... ....-..|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~p~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-----------CHHHHHHCCCHHHCCHHH
T ss_conf 555778804124176866888775788872247899999999999988762-----------423455348802389999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 999979996402996999958888999887999999999883--99489996038013430398999959568430593
Q 000351 1381 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1381 rQrL~LARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~--~~~TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~~ 1457 (1623)
|||++|||||+.+|+||+||||||+||+.+...|++.|++.. .++|+|+|||+++.+..||||++|++|+|++.|++
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-39 Score=349.34 Aligned_cols=217 Identities=25% Similarity=0.353 Sum_probs=184.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-E
Q ss_conf 289997899827999983111026867999789955799895459988603454887379997973699895876420-5
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-L 1316 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~-i 1316 (1623)
-|+++|++++|++. ++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.++|.|+...++.+.+++ |
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 69997789997996--8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHH
Q ss_conf 888477766666-57760377999----------------9998999999993289999862489502630299988945
Q 000351 1317 GIIPQSPVLFSG-TVRFNLDPFSE----------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1379 (1623)
Q Consensus 1317 ~~vpQdp~lf~g-TIr~NLd~~~~----------------~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgG 1379 (1623)
+++||+|.+|+. |+++|+..... ..+++..+ .+.+.++. .+++...+....+||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEF--LKLSHLYDRKAGELSGG 154 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHH--TTCGGGTTSBGGGSCHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHH--CCCCHHCCCCHHHCCCH
T ss_conf 725776424788742321430133303450456654213532899999-----99999876--19630205953569918
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCH
Q ss_conf 8999979996402996999958888999887999999999883-99489996038013430-398999959568430593
Q 000351 1380 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1457 (1623)
Q Consensus 1380 QrQrL~LARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~ 1457 (1623)
||||++|||||+.+|++|||||||++||+.+...|++.|++.. +|+|+|+|+|+++.+.. ||||+||++|++++.|+|
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECH
T ss_conf 88899999999759272324397656999999999999999997899899994769999986999999969989999668
Q ss_pred HHHHHC
Q ss_conf 678512
Q 000351 1458 EELLSN 1463 (1623)
Q Consensus 1458 ~~Ll~~ 1463 (1623)
+|+.++
T Consensus 235 ~e~~~~ 240 (254)
T d1g6ha_ 235 EEEIKN 240 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.1e-39 Score=348.57 Aligned_cols=220 Identities=22% Similarity=0.389 Sum_probs=185.0
Q ss_pred CCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-
Q ss_conf 5289997899827999983111026867999789955799895459988603454887379997973699895876420-
Q 000351 1237 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI- 1315 (1623)
Q Consensus 1237 g~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~- 1315 (1623)
-.|+++|++++|++. .+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.+..++.
T Consensus 5 ~~Lev~~l~k~yg~~--~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 079996189998998--888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5888477766666-5776037799--999989999999932899998624895026302999889458999979996402
Q 000351 1316 LGIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 1392 (1623)
Q Consensus 1316 i~~vpQdp~lf~g-TIr~NLd~~~--~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr 1392 (1623)
++++||++.+|+. |+++|+.... ....+...+.++.+ .+.+ .+++.........||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 3556765545776369999998887327888999999999-----9874-176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 996999958888999887999999999883-99489996038013430-3989999595684305936785128
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1393 ~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~~ 1464 (1623)
+|++|+|||||++||+.+...+++.|++.. +++|+|+++|+++.+.. ||||+||++|++++.|+|+++++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.4e-37 Score=333.28 Aligned_cols=219 Identities=26% Similarity=0.415 Sum_probs=180.6
Q ss_pred EEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 89997899827999983111026867999789955799895459988603454887379997973699895876420588
Q 000351 1239 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 1318 (1623)
Q Consensus 1239 I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~ 1318 (1623)
+++ ++..+|++- .+ |+||+++ +|.+||+||||||||||+++|.|+++|++|+|.++|.|+.+++.. |++|++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 8477766666-577603779-99999899999999328999986248950263029998894589999799964029969
Q 000351 1319 IPQSPVLFSG-TVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 1396 (1623)
Q Consensus 1319 vpQdp~lf~g-TIr~NLd~~-~~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~p~I 1396 (1623)
|||++.+|+. ||+||+... ...+..+..+- +.+.++. .|++...+.....||||||||++|||||+.+|+|
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~--~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i 147 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEK--LGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHT--TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHH--CCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 52314435220155766653233677889999-----9999986--3837566579444899998999998777516770
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 999588889998879999999998839--9489996038013430-398999959568430593678512899279999
Q 000351 1397 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1472 (1623)
Q Consensus 1397 LiLDEpTs~LD~~Te~~I~~~L~~~~~--~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~~~~~f~~l~ 1472 (1623)
|+|||||++||+.+...+++.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++++.++....++.
T Consensus 148 lllDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 6752865558879999999999999874397699981899999996999999989999999069998329988999985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-33 Score=301.80 Aligned_cols=201 Identities=25% Similarity=0.350 Sum_probs=168.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC-----------CEE
Q ss_conf 189983699818999998300111573499699999079999467999880886689987488739-----------189
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----------TVA 682 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~-----------~ia 682 (1623)
.|+++|++++|+ +..+|+|+||++++|++++|+||||||||||+++|.|.++|++| .+.+.+ .||
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG-~I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGGTEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCCCCCEEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878-79991641354770001589
Q ss_pred EECCCCCCC-CCCHHHHHHCCCC---CCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 981686567-6228999704999---99899----999999808646882199999620068998569389999999998
Q 000351 683 YVPQVSWIF-NATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 754 (1623)
Q Consensus 683 y~~Q~~~l~-~~Ti~eNI~~g~~---~~~~~----~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARa 754 (1623)
||+|++-++ +.||+||+.++.. .+.+. ...+++.+.+.+.. +.....||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHHHHHHH
T ss_conf 9800335342220999999999873999999999999999875985566-----------09954699999889999766
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 702998999817666769888999999998452-0-996899982796604-303989998097799942956785168
Q 000351 755 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-L-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 755 l~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~-~~~t~ilvth~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 830 (1623)
+..+|++++|||||++||+.+.+.+++. +..+ . .|+|+|++||++... ..||+|++|++|+|+++|+.+++.++.
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~l-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 4049982430688666898999899999-99998731980799948999999869999999899999985999998689
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-34 Score=308.07 Aligned_cols=209 Identities=22% Similarity=0.344 Sum_probs=179.4
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 28999789982799998311102686799978995579989545998860345488737999797369989587642058
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
-++++||+.+| +|++|||+|++||.+||+||||||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHC--
Q ss_conf 88477766-6665776037799--999989999999932899998624895026302999889458999979996402--
Q 000351 1318 IIPQSPVL-FSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-- 1392 (1623)
Q Consensus 1318 ~vpQdp~l-f~gTIr~NLd~~~--~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr-- 1392 (1623)
+++|+... |..++.+|+..+. ....+.+.++++.. +++..++....+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 45121357744209887641001466899999999865-----------9876767684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----996999958888999887999999999883-99489996038013430-3989999595684305936785128
Q 000351 1393 -----RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1464 (1623)
Q Consensus 1393 -----~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~-~DrI~VL~~G~ive~G~~~~Ll~~~ 1464 (1623)
+|+||+|||||++||+.+...+.+.|++.. .++|+|+++|+++.+.. ||||++|++|++++.|+|+++++++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-34 Score=304.02 Aligned_cols=201 Identities=30% Similarity=0.430 Sum_probs=167.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEC-----------CCEEE
Q ss_conf 8998369981899999830011157349969999907999946799988088668998748873-----------91899
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-----------GTVAY 683 (1623)
Q Consensus 615 I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~-----------~~iay 683 (1623)
|+++|++++|+ +..+|+|+||++++|++++|+||||||||||+++|.|.++|++| .+.+. ..|||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG-~I~i~g~~i~~~~~~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIGEKRMNDTPPAERGVGM 76 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEESSSCCTTSCGGGTCEEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHCEEEE
T ss_conf 99999999989---99998111778869989999989998299999999658788888-899999977888644432223
Q ss_pred ECCCCCCC-CCCHHHHHHCCCCC---CH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 81686567-62289997049999---98----999999998086468821999996200689985693899999999987
Q 000351 684 VPQVSWIF-NATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 755 (1623)
Q Consensus 684 ~~Q~~~l~-~~Ti~eNI~~g~~~---~~----~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal 755 (1623)
|+|+|-++ +.|++||+.++... +. ++..++++...+.+..+. ....||||||||++||||+
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-----------~~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHC-----------CHHHCCHHHHHHHHHHHHH
T ss_conf 43342026433378897899987599889999999999975788656648-----------9656999999999999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 0299899981766676988899999999845-209968999827966043-03989998097799942956785168
Q 000351 756 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 756 ~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 830 (1623)
..+|++++|||||++||+.+.+.|++.+..- ...|+|+|++||++.... .||+|++|++|++++.|+.+++.++.
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCC
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2e-33 Score=299.56 Aligned_cols=201 Identities=25% Similarity=0.407 Sum_probs=168.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEE----------------
Q ss_conf 1899836998189999983001115734996999990799994679998808866899874887----------------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~---------------- 677 (1623)
.|+++|++++|+ +..+++|+||++++|++++|+||||||||||+++|.|.+.|++| .+.+
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG-~I~~~g~~i~~~~~~~~~~~ 78 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGIFVPP 78 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEEEGGGTEECCG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEEECCCCHHHHCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989-89999998035664442453
Q ss_pred -CCCEEEECCCCCCC-CCCHHHHHHCCC---CCCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -39189981686567-622899970499---99989----9999999808646882199999620068998569389999
Q 000351 678 -RGTVAYVPQVSWIF-NATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 748 (1623)
Q Consensus 678 -~~~iay~~Q~~~l~-~~Ti~eNI~~g~---~~~~~----~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqR 748 (1623)
+..|+||+|+|-++ +.||+||+.++. ..+.+ +..+.++.+.+.+..+. ....||||||||
T Consensus 79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQR 147 (240)
T d1g2912 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQR 147 (240)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHH
T ss_pred CCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHH
T ss_conf 225512002212223101166763306877299989999999999987599667629-----------933499999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCHHH
Q ss_conf 999998702998999817666769888999999998452-09-96899982796604-3039899980977999429567
Q 000351 749 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFED 825 (1623)
Q Consensus 749 iaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~-~~t~ilvth~~~~l-~~~d~i~~l~~G~i~~~G~~~~ 825 (1623)
++||||+..+|++++|||||++||+.+...+++ ++..+ .+ |.|+|++||++..+ ..||+|++|++|+|++.|+.++
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~e 226 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 999999826998898258876569899989999-9999986369889999599999999699999998999999859999
Q ss_pred HHHCC
Q ss_conf 85168
Q 000351 826 LSNNG 830 (1623)
Q Consensus 826 l~~~~ 830 (1623)
+..+.
T Consensus 227 l~~~P 231 (240)
T d1g2912 227 VYDKP 231 (240)
T ss_dssp HHHSC
T ss_pred HHHCC
T ss_conf 98289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-33 Score=298.63 Aligned_cols=199 Identities=29% Similarity=0.441 Sum_probs=168.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC-----------CEEE
Q ss_conf 89983699818999998300111573499699999079999467999880886689987488739-----------1899
Q 000351 615 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----------TVAY 683 (1623)
Q Consensus 615 I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~-----------~iay 683 (1623)
|+++|++++|+. .+|+|+||++++|++++|+||||||||||+++|.|.++|++| .+.+.| .+||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG-~I~~~G~~i~~~~~~~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHHTCEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHCCEE
T ss_conf 899989999499----788433789879989999989998299999999647688878-899956734652165740561
Q ss_pred ECCCCCCC-CCCHHHHHHCCC----CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 81686567-622899970499----9998999999998086468821999996200689985693899999999987029
Q 000351 684 VPQVSWIF-NATVRDNILFGS----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 758 (1623)
Q Consensus 684 ~~Q~~~l~-~~Ti~eNI~~g~----~~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~ 758 (1623)
++|++-++ +.||+||+.++. .-++++..++++...+.+..+ .....||||||||++||||+..+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655575-----------89554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 98999817666769888999999998452--09968999827966043-03989998097799942956785168
Q 000351 759 SDVFIFDDPLSALDAHVGRQVFDRCIRGE--LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 759 ~~illLDep~s~LD~~~~~~i~~~~~~~~--~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 830 (1623)
|+++||||||++||+.+...+++. +..+ ..|.|+|++||++.... .||+|++|++|++++.|+.+++.++.
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~-l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREM-LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHH-HHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 771443478767998999999999-99998647968999749999999969999999799999986999998689
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.7e-33 Score=300.17 Aligned_cols=203 Identities=26% Similarity=0.399 Sum_probs=170.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEE----------------
Q ss_conf 1899836998189999983001115734996999990799994679998808866899874887----------------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 677 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~---------------- 677 (1623)
.|+++|++++|+.+ +..+|+|+||++++|++++|+||||||||||+++|.|..+|++| .+.+
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G-~I~~~g~~i~~~~~~~~~~~ 80 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLVASNGKLIVPPE 80 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEEEETTEESSCGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEEEECCCHHHCCHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874-59999999513731115312
Q ss_pred CCCEEEECCCCCCC-CCCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 39189981686567-6228999704999---998----999999998086468821999996200689985693899999
Q 000351 678 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 678 ~~~iay~~Q~~~l~-~~Ti~eNI~~g~~---~~~----~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRi 749 (1623)
+.+|||++|++-++ +.||+|||.++.. .+. ++..++++.+.+.+..+..| ..||||||||+
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRv 149 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred HCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHH
T ss_conf 0451477304334666657777665567613799999999999986659176664895-----------45999998589
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCHHHH
Q ss_conf 999987029989998176667698889999999984520--996899982796604-30398999809779994295678
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~--~~~t~ilvth~~~~l-~~~d~i~~l~~G~i~~~G~~~~l 826 (1623)
+||||+..+|+++|+||||++||+.+...+++ ++..+. .|.|+|+|||++..+ ..||+|++|++|+|++.|+.+++
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~-~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el 228 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 98757760466145447866799899889989-99999863598799997999999996999999989999998699999
Q ss_pred HHCC
Q ss_conf 5168
Q 000351 827 SNNG 830 (1623)
Q Consensus 827 ~~~~ 830 (1623)
.++.
T Consensus 229 ~~~P 232 (242)
T d1oxxk2 229 YDNP 232 (242)
T ss_dssp HHSC
T ss_pred HHCC
T ss_conf 8689
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-33 Score=294.10 Aligned_cols=202 Identities=25% Similarity=0.409 Sum_probs=165.8
Q ss_pred EEEEEEEEECCCCCCC-CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEC---------------
Q ss_conf 8998369981899999-830011157349969999907999946799988088668998748873---------------
Q 000351 615 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------- 678 (1623)
Q Consensus 615 I~~~~vsf~~~~~~~~-~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~--------------- 678 (1623)
|+++|++++|+.+... .+|+|+||++++|++++|+||||||||||+++|.|..+|++| .+.+.
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG-~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEE-EEEETTEEECTTCHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCC-CEEECCEEEEECCHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677-32886768520875551155
Q ss_pred -CCEEEECCCCCCC-CCCHHHHHHCC-----CCCCH--HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -9189981686567-62289997049-----99998--999999998086468821999996200689985693899999
Q 000351 679 -GTVAYVPQVSWIF-NATVRDNILFG-----SAFEP--ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 749 (1623)
Q Consensus 679 -~~iay~~Q~~~l~-~~Ti~eNI~~g-----~~~~~--~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRi 749 (1623)
..|||++|++-++ +.||+|||.++ .+-++ ++..+.++.+++.+..+ .....||||||||+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QRv 149 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQRV 149 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-----------CCHHHCCHHHHHHH
T ss_conf 4166430225222799649999999999849998999999999999769903554-----------89434999999899
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHH
Q ss_conf 99998702998999817666769888999999998452-09-968999827966043-0398999809779994295678
Q 000351 750 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 826 (1623)
Q Consensus 750 aLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~-~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~G~~~~l 826 (1623)
+||||+..+|+++|+||||++||+.+...|++. +..+ .+ |.|+|+|||++..+. .||+|++|++|+|++.|+.+++
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 986401058986874465565898885679999-9999864697899983899999986999999979999998799999
Q ss_pred HHC
Q ss_conf 516
Q 000351 827 SNN 829 (1623)
Q Consensus 827 ~~~ 829 (1623)
.++
T Consensus 229 ~~~ 231 (240)
T d3dhwc1 229 FSH 231 (240)
T ss_dssp TCS
T ss_pred HHC
T ss_conf 728
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.3e-33 Score=294.61 Aligned_cols=197 Identities=27% Similarity=0.431 Sum_probs=157.9
Q ss_pred EEEEEEEEECCCCCCC-CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC--------------
Q ss_conf 8998369981899999-8300111573499699999079999467999880886689987488739--------------
Q 000351 615 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-------------- 679 (1623)
Q Consensus 615 I~~~~vsf~~~~~~~~-~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~-------------- 679 (1623)
|+++|++++|+.+... .+|+|+||++++|++++|+||||||||||+++|.|..+|++| .+.+.|
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG-~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCC-EEEECCEECCCCCHHHCCHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766-26999998576885551231
Q ss_pred ---CEEEECCCCCCC-CCCHHHHHHCCC------CCCH-HHHHHHHH---HHCCHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf ---189981686567-622899970499------9998-99999999---808646882199999620068998569389
Q 000351 680 ---TVAYVPQVSWIF-NATVRDNILFGS------AFEP-ARYEKAID---VTSLQHDLDLLPGGDVTEIGERGVNISGGQ 745 (1623)
Q Consensus 680 ---~iay~~Q~~~l~-~~Ti~eNI~~g~------~~~~-~~~~~~~~---~~~l~~di~~l~~g~~t~ig~~g~~LSGGQ 745 (1623)
.|||++|+|-++ +.||+||+.++. ..+. ++..++.+ ...|.+. .....-..|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~p~~LSGGq 150 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQ 150 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH----------HHCCCHHHCCHHH
T ss_conf 255577880412417686688877578887224789999999999998876242345----------5348802389999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCH
Q ss_conf 999999998702998999817666769888999999998452-0-99689998279660430398999809779994295
Q 000351 746 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-L-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 823 (1623)
Q Consensus 746 kqRiaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~~ 823 (1623)
||||+||||+..+|+++++|||||+||+.+.+.|++. +..+ . .|+|+|+|||++.....||+|++|++|+|+++|+.
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9999987565227888994687654698999999999-999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-32 Score=290.44 Aligned_cols=201 Identities=27% Similarity=0.440 Sum_probs=167.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEC---------------
Q ss_conf 18998369981899999830011157349969999907999946799988088668998748873---------------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------------- 678 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~--------------- 678 (1623)
.++++|++++|+ +..+|+|+||++++||+++|+|+||||||||+++|.|.++|++| .+...
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~ 77 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKDGQLK 77 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTTSSEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CEEECCEEECCCCCCCHHCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899-77999999336775200002
Q ss_pred -----------CCEEEECCCCCCC-CCCHHHHHHCC----CCCCH----HHHHHHHHHHCCHHHH-HCCCCCCCCCCCCC
Q ss_conf -----------9189981686567-62289997049----99998----9999999980864688-21999996200689
Q 000351 679 -----------GTVAYVPQVSWIF-NATVRDNILFG----SAFEP----ARYEKAIDVTSLQHDL-DLLPGGDVTEIGER 737 (1623)
Q Consensus 679 -----------~~iay~~Q~~~l~-~~Ti~eNI~~g----~~~~~----~~~~~~~~~~~l~~di-~~l~~g~~t~ig~~ 737 (1623)
.+|||++|+|-++ +.||.||+.++ ...+. ++..+.++.+.+.+.. +..|
T Consensus 78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p---------- 147 (258)
T d1b0ua_ 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------- 147 (258)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG----------
T ss_pred CCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC----------
T ss_conf 3517679997454489983323141101021365657876299989999999999998299524430682----------
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHH-HCCEEEEEECC
Q ss_conf 9856938999999999870299899981766676988899999999845-209968999827966043-03989998097
Q 000351 738 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLS-QVDRIILVHEG 815 (1623)
Q Consensus 738 g~~LSGGQkqRiaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~t~ilvth~~~~l~-~~d~i~~l~~G 815 (1623)
..||||||||++||||+..+|+++++||||++||+.+.+.|++ ++.. ..+|+|+|+|||++..+. .||+|++|.+|
T Consensus 148 -~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 148 -VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225 (258)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETT
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECC
T ss_conf -2056778889899999843998788524555688788889987-65541036883389948999999869999999799
Q ss_pred EEEEECCHHHHHHCC
Q ss_conf 799942956785168
Q 000351 816 MVKEEGTFEDLSNNG 830 (1623)
Q Consensus 816 ~i~~~G~~~~l~~~~ 830 (1623)
+|++.|+.+++..+.
T Consensus 226 ~iv~~g~~~ev~~~P 240 (258)
T d1b0ua_ 226 KIEEEGDPEQVFGNP 240 (258)
T ss_dssp EEEEEECHHHHHHSC
T ss_pred EEEEECCHHHHHHCC
T ss_conf 999984999998389
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.6e-32 Score=286.35 Aligned_cols=200 Identities=22% Similarity=0.393 Sum_probs=162.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC--------------
Q ss_conf 189983699818999998300111573499699999079999467999880886689987488739--------------
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-------------- 679 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~-------------- 679 (1623)
.++++|++.+|+ +..+|+||||++++|++++++||||||||||+++|.|.++|++| .+.+.+
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~ 79 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHY 79 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCHHHHHHHHH
T ss_conf 699977899979---96887121799889979999999998499999999779768873-79999996640569999983
Q ss_pred CEEEECCCCCCC-CCCHHHHHHCCCCC-----------------CHHHHHHH---HHHHCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 189981686567-62289997049999-----------------98999999---9980864688219999962006899
Q 000351 680 TVAYVPQVSWIF-NATVRDNILFGSAF-----------------EPARYEKA---IDVTSLQHDLDLLPGGDVTEIGERG 738 (1623)
Q Consensus 680 ~iay~~Q~~~l~-~~Ti~eNI~~g~~~-----------------~~~~~~~~---~~~~~l~~di~~l~~g~~t~ig~~g 738 (1623)
.|+|++|+|-++ +.||.||+.++... +++...++ ++...+.+ ......
T Consensus 80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~ 148 (254)
T d1g6ha_ 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-----------LYDRKA 148 (254)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBG
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH-----------HCCCCH
T ss_conf 387257764247887423214301333034504566542135328999999999987619630-----------205953
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-HHCCEEEEEECCEE
Q ss_conf 85693899999999987029989998176667698889999999984520996899982796604-30398999809779
Q 000351 739 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMV 817 (1623)
Q Consensus 739 ~~LSGGQkqRiaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l-~~~d~i~~l~~G~i 817 (1623)
.+||||||||++||||+..+|+++||||||++||+.+.+.+++.+..-..+|+|+|++||++..+ ..||+|++|++|++
T Consensus 149 ~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 149 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 56991888899999999759272324397656999999999999999997899899994769999986999999969989
Q ss_pred EEECCHHHHHH
Q ss_conf 99429567851
Q 000351 818 KEEGTFEDLSN 828 (1623)
Q Consensus 818 ~~~G~~~~l~~ 828 (1623)
+.+|+.+|+.+
T Consensus 229 v~~g~~~e~~~ 239 (254)
T d1g6ha_ 229 IAEGRGEEEIK 239 (254)
T ss_dssp EEEEESHHHHH
T ss_pred EEEECHHHHHH
T ss_conf 99966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-31 Score=284.57 Aligned_cols=206 Identities=24% Similarity=0.403 Sum_probs=165.7
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC------------
Q ss_conf 99189983699818999998300111573499699999079999467999880886689987488739------------
Q 000351 612 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------ 679 (1623)
Q Consensus 612 ~~~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~------------ 679 (1623)
+..++++|++++|. +..+|+|+||++++|++++++||||||||||+++|.|.++|++| .+.+.|
T Consensus 4 d~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~ 79 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp SEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHH
T ss_conf 60799961899989---98888302578889979999999998599999999678888803-898424434466088888
Q ss_pred --CEEEECCCCCCC-CCCHHHHHHCCCC--CCHHHHHHHHH-HHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --189981686567-6228999704999--99899999999-80864688219999962006899856938999999999
Q 000351 680 --TVAYVPQVSWIF-NATVRDNILFGSA--FEPARYEKAID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 753 (1623)
Q Consensus 680 --~iay~~Q~~~l~-~~Ti~eNI~~g~~--~~~~~~~~~~~-~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLAR 753 (1623)
.++|++|++-+| +.|++||+.++.. .+.+...+.++ ...+...+.. .......+||||||||+++||
T Consensus 80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-------RLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-------TTTSBSSSSCHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH-------HHHCCHHHCCHHHHHHHHHHH
T ss_conf 7423556765545776369999998887327888999999999987417688-------875854338999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8702998999817666769888999999998452-0996899982796604-30398999809779994295678516
Q 000351 754 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 754 al~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~t~ilvth~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~ 829 (1623)
|+..+|++++|||||++||+.+.+.+++ ++..+ .+|+|+|++||++..+ ..||+|++|++|++++.|+.+++.++
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9982998740039886799999999999-9999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.1e-31 Score=280.58 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=166.6
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEE------------CCC
Q ss_conf 91899836998189999983001115734996999990799994679998808866899874887------------391
Q 000351 613 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGT 680 (1623)
Q Consensus 613 ~~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~------------~~~ 680 (1623)
++|+++|++.+|. ++.+|+|+||++++|++++|+||||||||||+++|+|.++|++| .+.+ +..
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G-~i~i~G~~i~~~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNVVEEPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTCHHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCHHHHHHH
T ss_conf 9789995899999---99998062568848979999999999999999999669887888-7999867244683988721
Q ss_pred EEEECCCCCCC-CCCHHHHHHCCC---CCCHHHH----HHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89981686567-622899970499---9998999----999998086468821999996200689985693899999999
Q 000351 681 VAYVPQVSWIF-NATVRDNILFGS---AFEPARY----EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 752 (1623)
Q Consensus 681 iay~~Q~~~l~-~~Ti~eNI~~g~---~~~~~~~----~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLA 752 (1623)
++||||++.++ +.|++||+.+.. ..+..+. ++.++...+.+. ......+||||||||++||
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lSgG~~qrv~iA 145 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIA 145 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHHHHHHCCHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999986797888-----------8504533799898999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9870299899981766676988899999999845-209968999827966043-0398999809779994295678516
Q 000351 753 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 829 (1623)
Q Consensus 753 Ral~~~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 829 (1623)
||+..+|++++|||||++||+.+.+.+++ ++.. ...|+|+|++||++..+. .||+|++|++|+++..|+.+++.++
T Consensus 146 ~al~~~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 146 RALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 99865999887337988979899999999-9999996599899995989999996999999989999999289999865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.6e-32 Score=286.37 Aligned_cols=190 Identities=25% Similarity=0.423 Sum_probs=158.3
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 28999789982799998311102686799978995579989545998860345488737999797369989587642058
Q 000351 1238 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 1317 (1623)
Q Consensus 1238 ~I~~~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1317 (1623)
.|+++|++++|+. ++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ .|.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 5999989999399---28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88477766666-57760377----9-999998999999993289999862489502630299988945899997999640
Q 000351 1318 IIPQSPVLFSG-TVRFNLDP----F-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 1391 (1623)
Q Consensus 1318 ~vpQdp~lf~g-TIr~NLd~----~-~~~~d~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALL 1391 (1623)
++||++.++.. |+++|+.. + ...+++++.++++..++. +++..+ ..||||||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 99501357888289999999997548863799999999874885--------630126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEEC
Q ss_conf 299699995888899988799999999988399489996038013430398999959
Q 000351 1392 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 1448 (1623)
Q Consensus 1392 r~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~VL~~ 1448 (1623)
.+|+++||||||++||+++...+++.|.+..+++++++|+|+ +.+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 499899986862016999999999999999867999999991-62544161234010
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=3e-30 Score=272.09 Aligned_cols=184 Identities=24% Similarity=0.439 Sum_probs=149.7
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC-----------CEEEECCCCCCC-CCCHHHHH
Q ss_conf 300111573499699999079999467999880886689987488739-----------189981686567-62289997
Q 000351 632 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----------TVAYVPQVSWIF-NATVRDNI 699 (1623)
Q Consensus 632 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~-----------~iay~~Q~~~l~-~~Ti~eNI 699 (1623)
.+ |+||++. +++++++||||||||||+++|.|.++|++| .+.+.| .|||++|++-++ +.||+||+
T Consensus 15 ~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl 91 (240)
T d2onka1 15 RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRG-EVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHH
T ss_conf 99-9999749-979999979998099999999739998962-89999999886998992852252314435220155766
Q ss_pred HCCCC-CCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 04999-99899----99999980864688219999962006899856938999999999870299899981766676988
Q 000351 700 LFGSA-FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 774 (1623)
Q Consensus 700 ~~g~~-~~~~~----~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~illLDep~s~LD~~ 774 (1623)
.|+.. .+... ..+.++.+.+.+ ........||||||||++||||+..+|++++|||||++||+.
T Consensus 92 ~~~l~~~~~~~~~~~v~~~l~~~gl~~-----------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~ 160 (240)
T d2onka1 92 AYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH
T ss_conf 653233677889999999998638375-----------665794448999989999987775167706752865558879
Q ss_pred HHHHHHHHHHHHH-CC-CCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8999999998452-09-96899982796604-303989998097799942956785168
Q 000351 775 VGRQVFDRCIRGE-LS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNG 830 (1623)
Q Consensus 775 ~~~~i~~~~~~~~-~~-~~t~ilvth~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 830 (1623)
+.+.+++. +..+ .+ |.|+|++||++..+ ..||+|++|++|+++++|+.+++.+..
T Consensus 161 ~~~~i~~~-i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 161 TKGVLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHHHHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 99999999-99998743976999818999999969999999899999990699983299
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=6.4e-28 Score=251.98 Aligned_cols=195 Identities=21% Similarity=0.341 Sum_probs=159.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC-------------C
Q ss_conf 189983699818999998300111573499699999079999467999880886689987488739-------------1
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-------------T 680 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~-------------~ 680 (1623)
.++++|++.+ ..|++|||+|++||+++|+||||||||||+++|.|.. +.+| .+...| .
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G-~I~~~g~~i~~~~~~~~~~~ 73 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKG-SIQFAGQPLEAWSATKLALH 73 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSS-EEEESSSBGGGSCHHHHHHH
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCE-EEEECCEECCCCCHHHHHHH
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955-99999999986998999864
Q ss_pred EEEECCCCCC-CCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8998168656-76228999704999--99899999999808646882199999620068998569389999999998702
Q 000351 681 VAYVPQVSWI-FNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 757 (1623)
Q Consensus 681 iay~~Q~~~l-~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~ 757 (1623)
.+|++|+... +..++.+++.++.. ...++..++++.+.+.+ .++....+||||||||+++|||+++
T Consensus 74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~ 142 (231)
T d1l7vc_ 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQ 142 (231)
T ss_dssp EEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 02451213577442098876410014668999999998659876-----------7676844569988999999999985
Q ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCH-HHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf -------99899981766676988899999999845-2099689998279660-43039899980977999429567851
Q 000351 758 -------NSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSN 828 (1623)
Q Consensus 758 -------~~~illLDep~s~LD~~~~~~i~~~~~~~-~~~~~t~ilvth~~~~-l~~~d~i~~l~~G~i~~~G~~~~l~~ 828 (1623)
+|+++||||||++||+.....+.+ ++.. ..+|+|+|++||++.. ++.||+|++|++|++++.|+.+++.+
T Consensus 143 ~~p~~~p~p~llllDEPt~gLD~~~~~~i~~-~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDK-ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp HCTTTCTTCCEEEESSCSTTCCHHHHHHHHH-HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred HCCCCCCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 1713389988999718777789899999999-999998679999999677999999799999997998999889999818
Q ss_pred C
Q ss_conf 6
Q 000351 829 N 829 (1623)
Q Consensus 829 ~ 829 (1623)
+
T Consensus 222 ~ 222 (231)
T d1l7vc_ 222 P 222 (231)
T ss_dssp H
T ss_pred C
T ss_conf 8
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.95 E-value=8.8e-27 Score=242.13 Aligned_cols=182 Identities=21% Similarity=0.375 Sum_probs=141.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEC--------CCEEEEC
Q ss_conf 18998369981899999830011157349969999907999946799988088668998748873--------9189981
Q 000351 614 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--------GTVAYVP 685 (1623)
Q Consensus 614 ~I~~~~vsf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~--------~~iay~~ 685 (1623)
.|+++|++++|+ +++|+|+||++++|++++|+||||||||||+++|+|.++|++| .+... +.++|+|
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G-~I~~~g~~i~~~~~~i~~~~ 76 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG-EIIYNGVPITKVKGKIFFLP 76 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGGGGGEEEEC
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEEHHHHCCCEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778-89999896267367089995
Q ss_pred CCCCCC-CCCHHHHHHC-----CCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 686567-6228999704-----9999989999999980864688219999962006899856938999999999870299
Q 000351 686 QVSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1623)
Q Consensus 686 Q~~~l~-~~Ti~eNI~~-----g~~~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~ 759 (1623)
|++.++ +-|+.+|+.+ +...++++..+.++...+.+ +.++-..||||||||+++|||++.+|
T Consensus 77 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~~~~ 144 (200)
T d1sgwa_ 77 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNA 144 (200)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 013578882899999999975488637999999998748856------------30126868971888899999886499
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEEC
Q ss_conf 8999817666769888999999998452099689998279660430398999809
Q 000351 760 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 814 (1623)
Q Consensus 760 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~ 814 (1623)
+++||||||++||+++.+.+++.+..-...+.++|+.+| +.+..||.+..|++
T Consensus 145 ~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~--~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 145 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR--EELSYCDVNENLHK 197 (200)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES--SCCTTSSEEEEGGG
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE--CHHHHCCHHHHEEE
T ss_conf 899986862016999999999999999867999999991--62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=4e-20 Score=184.63 Aligned_cols=306 Identities=15% Similarity=0.083 Sum_probs=256.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997789999999999999999999999999999860279726999999999999999999999999999999999999
Q 000351 295 LNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRS 374 (1623)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~ii~~l~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~ir~ 374 (1623)
..+.+++.++..+++.++..++....|++++.++|...........+.+++.+++..++..++.....+...+.+.++..
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 89 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 89 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999999999874468778999999999999997645335466544343100011
Q ss_pred HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999996299444327898899999999999999999-99999998999999999999789769999999999999
Q 000351 375 TLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVC-QALHTLWSAPFRIIISLVLLYNELGVASLLGALLLVFM 453 (1623)
Q Consensus 375 ~L~~~iy~K~l~l~~~~~~~~~~G~i~nlms~Dv~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~~~l~~~~~~~~~ 453 (1623)
.++..+|+|.++.+....++.++|++++++++|++.+.+.. ..+.......+.++++++.++...+..+++.++++++.
T Consensus 90 ~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~ 169 (319)
T d3b60a2 90 TMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIV 169 (319)
T ss_dssp HHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 00047777650101111023332211111212121000011111200112334456688888765200210256689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999936999998565099999999999999999999999999999999999
Q 000351 454 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 533 (1623)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~l~~ik~IK~~~~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 533 (1623)
..+..+..++..+..++..+..++..+.+.|.++|++.||.+++|+.+.+++++..++..+...+...............
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
T d3b60a2 170 SIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 249 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99887666687787898876445677887776248723531110102456666653135677888887777406401000
Q ss_pred HHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999--999999998827975888999999999999999999999999999999999999998412012
Q 000351 534 PVLV--TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 600 (1623)
Q Consensus 534 ~~~~--~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~ 600 (1623)
..+. .++.++.+....|.+++|.+++.+.+...+..|+..++..++.+.++.+|.+|+.++++.|++
T Consensus 250 ~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 250 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=2.6e-20 Score=186.25 Aligned_cols=305 Identities=16% Similarity=0.174 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997789999999999999999999999999999860279726-----9--9999999999999999999999999999
Q 000351 295 LNSSLGGRFWWGGFWKIGNDLSQFVGPLLLNQLLQSMQQDGPAW-----I--GYIYAFSIFVGVVLGVLCEAQYFQNVMR 367 (1623)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~ii~~l~~~~~~~-----~--g~~l~~~~~~~~~~~~~~~~~~~~~~~r 367 (1623)
..+.+++.++...++.++..++....|++++.++|.+...+... . ...++.++++..++..++.....+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999962994443278988999999999999999999-999999899999999999978976999999
Q 000351 368 VGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQLQQVCQ-ALHTLWSAPFRIIISLVLLYNELGVASLLG 446 (1623)
Q Consensus 368 ~~~~ir~~L~~~iy~K~l~l~~~~~~~~~~G~i~nlms~Dv~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~~~l~~ 446 (1623)
.+.+++..++..+|+|.++++...+++.++|++++++++|++.+.+... .+..++...+.++++++.++...+..+++.
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 167 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA 167 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000014688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999993699999856509999999999999999999999999999
Q 000351 447 ALLLVFMFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACN 526 (1623)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~l~~ik~IK~~~~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 526 (1623)
++++++...+...+.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+........
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 247 (323)
T d2hyda2 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99887777777641233320267789899999978788755970234676411100233022311110156776520000
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999--99999999882797588899999999999999999999999999999999999999841201
Q 000351 527 SFILNSIPVLV--TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEE 599 (1623)
Q Consensus 527 ~~~~~~~~~~~--~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e 599 (1623)
.........+. .++.++.+....|.+++|.+++.+.++..+..|+..+...++.+.++.+|++||.+++++|+
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=4.7e-17 Score=158.19 Aligned_cols=314 Identities=12% Similarity=0.105 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778999898514-46999999999999999986100002120345765778813--899999999879999999999999
Q 000351 902 FKVLSRYKDALG-GLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWL 978 (1623)
Q Consensus 902 ~~vy~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~--~~~~iy~~l~~~~~~~~~~~~~~~ 978 (1623)
|+++++.++... .++.+++.+++.++..++....++.++...|+.....+... .+..++.++.+...++.++..+..
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96899999999999999999999999999999999999999999874468778999999999999997645335466544
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999986398422024781137898721610030356899999999999776576689889989999
Q 000351 979 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 1058 (1623)
Q Consensus 979 ~~~~~~~s~~l~~~ll~~il~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~ 1058 (1623)
...+.+...+++.++++++++.|+.+|++.++|++++|+++|++.+...+.......+.....++..++.+...+|...+
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 34310001100047777650101111023332211111212121000011111200112334456688888765200210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999986304499999998602399998339999999997889999999999999888
Q 000351 1059 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 1138 (1623)
Q Consensus 1059 ~~~~l~~~~~~i~~~~~~~~r~l~~l~~~~~s~l~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 1138 (1623)
+++..++++..+...+.+..++..+...+..+...+...|.++|+.++|+|+.++.+.+++.+..+...+........+.
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25668999999887666687787898876445677887776248723531110102456666653135677888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999998--71697652135799999999999999999999999999999997899999984229
Q 000351 1139 WLAIRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 1216 (1623)
Q Consensus 1139 wl~~~l~li~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~Gl~l~~~~~l~~~l~~~~~~~~~~e~~~~av~Ri~~~~~~ 1216 (1623)
+......++......++..++. ...+..+ .|.+...+.+...+..++..+...+..+.....+.+|+.++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLT-----AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4064010000002379999999999809978-----99999999999999999999999999999999999999999669
Q ss_pred CCCC
Q ss_conf 9989
Q 000351 1217 PSEA 1220 (1623)
Q Consensus 1217 ~~e~ 1220 (1623)
|+|+
T Consensus 316 ~~E~ 319 (319)
T d3b60a2 316 EQEK 319 (319)
T ss_dssp CCSC
T ss_pred CCCC
T ss_conf 9899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.82 E-value=1.1e-16 Score=154.92 Aligned_cols=310 Identities=11% Similarity=0.129 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC-CC---HHHH-----HHHHHHHHHHHHHHHH
Q ss_conf 7899989851446999999999999999986100002120345765778-81---3899-----9999998799999999
Q 000351 903 KVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP---LFYN-----TIYSLLSFGQVLVTLA 973 (1623)
Q Consensus 903 ~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~---~~~~-----~iy~~l~~~~~~~~~~ 973 (1623)
+.+..|+++. ++.++..+++.++..++....++.++...|....... .. ..+. ..+.++.+...++.+.
T Consensus 3 Krl~~~~k~~--k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPY--KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGG--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999--99999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999863984220247811378987216100303568999999999997765766898899
Q 000351 974 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 1053 (1623)
Q Consensus 974 ~~~~~~~~~~~~s~~l~~~ll~~il~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~~~i~~~~ 1053 (1623)
..+.....+.+...+++.++++++++.|+.||++.++|++++|+++|++.++..+...+...+..+..++..++.+...+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999863044999999986023999983399999999978899999999999
Q 000351 1054 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 1133 (1623)
Q Consensus 1054 ~~~~~~~~~l~~~~~~i~~~~~~~~r~l~~l~~~~~s~l~~~~~E~l~Gl~tIraf~~~~~~~~~~~~~~d~~~~~~~~~ 1133 (1623)
|.+.++.++..++++.+...+.+..++..+...+..+...+++.|.++|+.+||+|++++.+.+++.+..++..+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998889999999999999999999998--716976521357999999999999999999999999999999978999999
Q 000351 1134 MGANRWLAIRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1211 (1623)
Q Consensus 1134 ~~~~~wl~~~l~li~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~Gl~l~~~~~l~~~l~~~~~~~~~~e~~~~av~Ri~ 1211 (1623)
...+.+......++..+...+...++. ...+..+ .|.+...+.+...+..++..+...+..+.....+.+|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s-----~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~ 315 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIT-----VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVF 315 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 652000011111012055899999999999849988-----999999999999999999999999999999999999999
Q ss_pred HHHCCCCC
Q ss_conf 84229998
Q 000351 1212 NYIELPSE 1219 (1623)
Q Consensus 1212 ~~~~~~~e 1219 (1623)
++.+.++|
T Consensus 316 elLd~e~e 323 (323)
T d2hyda2 316 QLIDEDYD 323 (323)
T ss_dssp HHHTCCCS
T ss_pred HHHCCCCC
T ss_conf 99779998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.36 E-value=3.6e-14 Score=133.24 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=111.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 78995579989545998860345488737999797369989587642058884777666665776037799999989999
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 1347 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~lf~gTIr~NLd~~~~~~d~~i~~ 1347 (1623)
||+|+||||||||||++.+.|++.+..|.+.+++.+....+...........++.+.++..+...+.....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCC
Q ss_conf 999932899998624895026302999889458999979996402996999958888999887999999999883--994
Q 000351 1348 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSC 1425 (1623)
Q Consensus 1348 aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~--~~~ 1425 (1623)
.+.+... ..+|+|++++.++++++.++|+++++|||+...+. + ...++.+.+.. .++
T Consensus 73 ---------------~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 73 ---------------YGVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPNV 131 (178)
T ss_dssp ---------------EEECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTTS
T ss_pred ---------------HHCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCCC
T ss_conf ---------------3037625----66532013789999997409974230277731004-5-7999999987505797
Q ss_pred EEEEEECCCHHHHCCCEEEEEECCEEEEECC
Q ss_conf 8999603801343039899995956843059
Q 000351 1426 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1456 (1623)
Q Consensus 1426 TvI~IaHrl~ti~~~DrI~VL~~G~ive~G~ 1456 (1623)
|+|.++|+.+....+|++..+.+|++++.+.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 8999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=3.9e-10 Score=98.40 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHCCCEEEEE
Q ss_conf 8894589999799964----02996999958888999887999999999883-994899960380134303989999
Q 000351 1375 NFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL 1446 (1623)
Q Consensus 1375 ~LSgGQrQrL~LARAL----Lr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~-~~~TvI~IaHrl~ti~~~DrI~VL 1446 (1623)
.+|||||.+++||-.+ ..+++|++||||+++||+.....+.+.|++.. .+.-+|+|||+...+..+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.97 E-value=3.7e-11 Score=107.23 Aligned_cols=147 Identities=14% Similarity=0.014 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC--CEEEECC-----------CCCCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 99999079999467999880886689987488739--1899816-----------8656762289997049999989999
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVPQ-----------VSWIFNATVRDNILFGSAFEPARYE 711 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~--~iay~~Q-----------~~~l~~~Ti~eNI~~g~~~~~~~~~ 711 (1623)
+++|+||+|||||||++.++|++++..| .+...+ ...+..| ...+...+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAI-GFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS-------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE-EEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 8999989993899999999814888864-6998771328888765311233667778875411345544302--------
Q ss_pred HHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CC
Q ss_conf 99998086468821999996200689985693899999999987029989998176667698889999999984520-99
Q 000351 712 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SG 790 (1623)
Q Consensus 712 ~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~ 790 (1623)
..+......+++|+++|.+++++...+|+++++|||....+. . +...+.+..-+. .+
T Consensus 73 --------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 73 --------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPN 130 (178)
T ss_dssp --------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTT
T ss_pred --------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCC
T ss_conf --------------------303762566532013789999997409974230277731004-5-799999998750579
Q ss_pred CEEEEECCCCCHHHHCCEEEEEECCEEEEECC
Q ss_conf 68999827966043039899980977999429
Q 000351 791 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 822 (1623)
Q Consensus 791 ~t~ilvth~~~~l~~~d~i~~l~~G~i~~~G~ 822 (1623)
.++|+++|+....+.+|++..+++|++.+-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=2.8e-08 Score=82.37 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEE--EEC
Q ss_conf 8894589999799964----0299699995888899988799999999988399489996038013430398999--959
Q 000351 1375 NFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL--LDS 1448 (1623)
Q Consensus 1375 ~LSgGQrQrL~LARAL----Lr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~DrI~V--L~~ 1448 (1623)
.+|+|||+++.++..+ ..+++++++|||-++|++...+.+.+.|++.+++.-+|++||+...+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 5
Q 000351 1449 G 1449 (1623)
Q Consensus 1449 G 1449 (1623)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=5.1e-06 Score=62.93 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEE--E
Q ss_conf 85693899999999987----02998999817666769888999999998452099689998279660430398999--8
Q 000351 739 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL--V 812 (1623)
Q Consensus 739 ~~LSGGQkqRiaLARal----~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~--l 812 (1623)
..+|+|||+...++..+ ...+.++++|||-++|++...+.+.+ .+....++.-+|++||+..+++.+|+++. +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 097
Q 000351 813 HEG 815 (1623)
Q Consensus 813 ~~G 815 (1623)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=9.2e-06 Score=60.69 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHCCEEEEE
Q ss_conf 85693899999999987----02998999817666769888999999998452-0996899982796604303989998
Q 000351 739 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILV 812 (1623)
Q Consensus 739 ~~LSGGQkqRiaLARal----~~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~t~ilvth~~~~l~~~d~i~~l 812 (1623)
..||||||.+++||-.+ +.++++++||||+++||+.....+.+. +... -++.-+|++||++.++..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999728998899995878999736617999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.013 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=8.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 899557998954599886
Q 000351 1269 VGIVGRTGAGKSSMLNTL 1286 (1623)
Q Consensus 1269 vgIvGrsGSGKSTLl~lL 1286 (1623)
+-|.|||.+||||+++.+
T Consensus 44 ~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHH
T ss_conf 999546731368999987
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.35 E-value=0.01 Score=34.48 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCH
Q ss_conf 989998176667698889999999984520-99689998279660
Q 000351 759 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHF 802 (1623)
Q Consensus 759 ~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~t~ilvth~~~~ 802 (1623)
..++|+||..++=|+.-+..+...++..+. .+..++++||..+.
T Consensus 115 ~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL 159 (224)
T d1ewqa2 115 NSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL 159 (224)
T ss_dssp TEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred CCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 727855454568623320025888888886237613786520233
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.99 E-value=0.04 Score=29.25 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83111026867999789955799895459988603
Q 000351 1254 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1254 ~vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~r 1288 (1623)
+-|+++..-+.||+.+.|.|++|+||||++.-+..
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.80 E-value=0.0079 Score=35.34 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=31.4
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 26867999789955799895459988603454887379997
Q 000351 1260 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 1300 (1623)
Q Consensus 1260 sl~I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~Id 1300 (1623)
..-++.|..+.|+|++||||||++++|++.+++..=-|.|.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 99998378889994035662578999865301456233113
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.73 E-value=0.05 Score=28.42 Aligned_cols=176 Identities=20% Similarity=0.277 Sum_probs=87.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHC-C-CCCCCCHH
Q ss_conf 789955799895459988603454--8873799979736998958764205888477766666577603-7-79999998
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-D-PFSEHSDA 1343 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~--p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~lf~gTIr~NL-d-~~~~~~d~ 1343 (1623)
.|||+|..|+|||||+..|+..-. ...|++. +|..+.+.......+.+++-+.-..+--...+-|+ | |+...--.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
T ss_conf 999994889809999999999709755306622-2211356269888738768751022223432106880681554335
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999328999986248950263029998894589999799964029969999---588889998879999999998
Q 000351 1344 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL---DEATAAVDVRTDALIQKTIRE 1420 (1623)
Q Consensus 1344 ~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~p~ILiL---DEpTs~LD~~Te~~I~~~L~~ 1420 (1623)
+...++..+.. - -.+-+.......+-++.+-.|+.. +.|.++++ |.+ + |.. +.+ +.+++
T Consensus 83 e~~~al~~~D~----------a-vlvvda~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~-~--~~~--~~l-~~~~~ 144 (267)
T d2dy1a2 83 EIRGALEAADA----------A-LVAVSAEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG-G--DYY--ALL-EDLRS 144 (267)
T ss_dssp HHHHHHHHCSE----------E-EEEEETTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC-C--CHH--HHH-HHHHH
T ss_pred HHHHHHCCCCC----------E-EEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC-C--CCH--HHH-HHHHH
T ss_conf 56543124673----------3-898423577421157887765540-44310133320222-2--101--234-46888
Q ss_pred HCCCCEEEEEE----CCCHHHHC--CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 83994899960----38013430--39899995956843059367851
Q 000351 1421 EFKSCTMLIIA----HRLNTIID--CDRILLLDSGRVLEYDTPEELLS 1462 (1623)
Q Consensus 1421 ~~~~~TvI~Ia----Hrl~ti~~--~DrI~VL~~G~ive~G~~~~Ll~ 1462 (1623)
.+....-+.+- .....+.+ ..+.+..++|.-.+..-|.++..
T Consensus 145 ~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~ 192 (267)
T d2dy1a2 145 TLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE 192 (267)
T ss_dssp HHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred HHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHH
T ss_conf 746586768600258832687624765489961898745407777899
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.57 E-value=0.057 Score=27.97 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCE
Q ss_conf 999640299699995888899988799999999988399489996038013430398
Q 000351 1386 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR 1442 (1623)
Q Consensus 1386 LARALLr~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~~~Dr 1442 (1623)
|..+|=.+|+|+++.|.. |.+|-....++ ...|+.|++.-|--+.+...+|
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAVQA---SLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHHHH---HHCCCEEEEEECCCCHHHHHHH
T ss_conf 999984138889845768---75999999999---7249858998336766766543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.26 E-value=0.034 Score=29.93 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 49969999907999946799988088668998748873918998168656762289997049999989999999980864
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 720 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~ 720 (1623)
.++-++.+.||+||||||.+.+++.+.+......+.+-..+-|. .
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~------~----------------------------- 200 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD------I----------------------------- 200 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC------C-----------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC------C-----------------------------
T ss_conf 41054898767877744779998666257874699962674345------6-----------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 68821999996200689985693899999999987029989998176667698889999999984520996899982796
Q 000351 721 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 800 (1623)
Q Consensus 721 ~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~ 800 (1623)
++--+..+.+ ..|+.---+|..++=.+|||++..|.- |.++++...+. ...|..|+-.-|-.
T Consensus 201 ------~~~~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 201 ------DGIGQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTN 262 (401)
T ss_dssp ------SSSEEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCS
T ss_pred ------CCCCEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH----HHCCCEEEEEECCC
T ss_conf ------7887026558-----767799999999984138889845768---75999999999----72498589983367
Q ss_pred CHHHHCCE
Q ss_conf 60430398
Q 000351 801 HFLSQVDR 808 (1623)
Q Consensus 801 ~~l~~~d~ 808 (1623)
+-....++
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.23 E-value=0.071 Score=27.13 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=36.6
Q ss_pred CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCC
Q ss_conf 9830011157349969999907999946799988088668998748873918998168
Q 000351 630 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 687 (1623)
Q Consensus 630 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~ 687 (1623)
-+-|+++.-.+.+|+++.|.|++|+||||++.-++-.+....| .++.|++-+
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g------~~v~~~s~E 73 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG------KKVGLAMLE 73 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC------CCEEEEESS
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCEEEEEEC
T ss_conf 3668887469789808999947999799999999972655336------634576401
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0004 Score=46.56 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=29.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 97899557998954599886034548873799979736
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 1304 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di 1304 (1623)
..|.|+||+|+|||||+..+.+.+....+.+.+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~ 39 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE 39 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 69999889997199999999999997799799998455
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.096 Score=26.00 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=12.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99978995579989545998860
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLF 1287 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~ 1287 (1623)
||+.+-|.|++|+||||++.-|.
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 89589999289998999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.66 E-value=0.014 Score=33.10 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 9969999907999946799988088668
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGELPP 669 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~~~~ 669 (1623)
+|+.++++|++|.|||||+++|.|....
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~ 121 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL 121 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH
T ss_conf 6980899788987788887730535550
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.88 E-value=0.03 Score=30.36 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
+|||+|++|+|||||++.|++-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.73 E-value=0.033 Score=30.02 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99978995579989545998860345488737999
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~I 1299 (1623)
+|+...++|+||.|||||++.|.+-.....|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.017 Score=32.43 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999990799994679998808866
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
.++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.36 E-value=0.12 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 9789955799895459988603454887379997
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 1300 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~Id 1300 (1623)
+.|.|+|++||||||+++.|.+-. .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEEC
T ss_conf 799998999999999999999957---9979960
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.13 E-value=0.037 Score=29.58 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 9999907999946799988088668998
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELPPVSD 672 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~~~~G 672 (1623)
.++|+|++|+|||||+++|.|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.09 E-value=0.015 Score=33.05 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99789955799895459988603454
Q 000351 1266 SDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1266 GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
|..+.|+|||||||||+.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.05 E-value=0.18 Score=23.70 Aligned_cols=156 Identities=14% Similarity=0.082 Sum_probs=72.9
Q ss_pred CCCCCEE-EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHH-HCCCCCCHHH
Q ss_conf 3001115-7349969999907999946799988088668998748873918998168656762289997-0499999899
Q 000351 632 TLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNI-LFGSAFEPAR 709 (1623)
Q Consensus 632 ~L~~i~l-~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~l~~~Ti~eNI-~~g~~~~~~~ 709 (1623)
-|+.+=- .+++|+++.|.|++|||||+++.-++-..... | ..+.|++-+- -...++++. .++ ++...
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~-~------~~~~~is~e~--~~~~~~~~~~~~~--~~~~~ 82 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-K------ERAILFAYEE--SRAQLLRNAYSWG--MDFEE 82 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-T------CCEEEEESSS--CHHHHHHHHHTTS--CCHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-C------CCCCEEECCC--CHHHHHHHHHHCC--CCHHH
T ss_conf 7988456898698499999189999999999999999872-3------2441121267--9999999999829--98699
Q ss_pred HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCC---CHHHHHHHHHHHHH
Q ss_conf 99999980864688219999962006899856938999999999870-299899981766676---98889999999984
Q 000351 710 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY-SNSDVFIFDDPLSAL---DAHVGRQVFDRCIR 785 (1623)
Q Consensus 710 ~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~-~~~~illLDep~s~L---D~~~~~~i~~~~~~ 785 (1623)
+.. .+.............. +...-.+.+++. .++++++.|..+... +..........+..
T Consensus 83 ~~~---------------~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~ 146 (242)
T d1tf7a2 83 MER---------------QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTG 146 (242)
T ss_dssp HHH---------------TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHH
T ss_pred HHH---------------CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 854---------------5861799730001017-999999999998408853322043143048999999999999999
Q ss_pred HH-CCCCEEEEECCCCC-----------HHHHCCEEEEEEC
Q ss_conf 52-09968999827966-----------0430398999809
Q 000351 786 GE-LSGKTRVLVTNQLH-----------FLSQVDRIILVHE 814 (1623)
Q Consensus 786 ~~-~~~~t~ilvth~~~-----------~l~~~d~i~~l~~ 814 (1623)
.. ..+.+++++.|... .-..+|-++.++.
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99986983999985675125544577640464216999998
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.00 E-value=0.18 Score=23.65 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH
Q ss_conf 2996999958888999887999999999883--9948999603801343
Q 000351 1392 RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTII 1438 (1623)
Q Consensus 1392 r~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~--~~~TvI~IaHrl~ti~ 1438 (1623)
.+..++++||.-.+-|++.-..+-.++-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.96 E-value=0.029 Score=30.43 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.19 Score=23.43 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=67.4
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCCCC---CCCCCEEEECCCEEEECCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 34996999990799994679998808866---89987488739189981686567622899970-499999899999999
Q 000351 640 IPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEKAID 715 (1623)
Q Consensus 640 i~~G~~~~ivG~~GsGKSTLl~~llG~~~---~~~G~~~~~~~~iay~~Q~~~l~~~Ti~eNI~-~g~~~~~~~~~~~~~ 715 (1623)
+.+|+++.|.|+.|+|||||+..++-.+. +.-|......+.+-|+.-+... ..+++.+. .+...+.........
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~--~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH--HHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 558958999928999899999999999976997211123578736898512349--999999999862368666531233
Q ss_pred HHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHH-HCC
Q ss_conf 80864688219999962006899856938999999999870299899981766676-----988899999999845-209
Q 000351 716 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-----DAHVGRQVFDRCIRG-ELS 789 (1623)
Q Consensus 716 ~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~illLDep~s~L-----D~~~~~~i~~~~~~~-~~~ 789 (1623)
. +...+.-+ ....... ....-.+. .-..+++++++|-..... |......+...+..- ...
T Consensus 104 ~------~~~~~~~~-----~~~~~~~--~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 104 G------LLIQPLIG-----SLPNIMA--PEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp H------EEECCCTT-----SCCCTTS--HHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred C------CEECCCCC-----CCCHHHH--HHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3------23214567-----4203578--99999988-752676589628135422665232256899998877776447
Q ss_pred CCEEEEECCCC
Q ss_conf 96899982796
Q 000351 790 GKTRVLVTNQL 800 (1623)
Q Consensus 790 ~~t~ilvth~~ 800 (1623)
+.+++++.|..
T Consensus 170 ~~~vi~v~H~~ 180 (274)
T d1nlfa_ 170 GCSIVFLHHAS 180 (274)
T ss_dssp CCEEEEEEEC-
T ss_pred CCCEEHHHHCC
T ss_conf 97540131005
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.73 E-value=0.19 Score=23.36 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=12.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 799978995579989545998860
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLF 1287 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~ 1287 (1623)
+.-+.|-++|+.||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 999899998999998999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.64 E-value=0.034 Score=29.94 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7899557998954599886034548
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVEL 1292 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p 1292 (1623)
.++|+|++|||||||+.-|.+.+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.60 E-value=0.042 Score=29.12 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=60.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 73499699999079999467999880886689987488739189981686567622899970499999899999999808
Q 000351 639 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 718 (1623)
Q Consensus 639 ~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~ 718 (1623)
-+..+.-+.|+|++||||||++++|+++.++..- .+. +...+-+.-. .... ..
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~r-ivt-------iEd~~El~l~---------~~~~---------~~- 214 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER-IIS-------IEDTEEIVFK---------HHKN---------YT- 214 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCC-EEE-------EESSCCCCCS---------SCSS---------EE-
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCC-EEE-------CCCHHHHHCC---------CCCC---------CC-
T ss_conf 9983788899940356625789998653014562-331-------1322655111---------1245---------41-
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 64688219999962006899856938999999999870299899981766676988899999999845209968999827
Q 000351 719 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 798 (1623)
Q Consensus 719 l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth 798 (1623)
+... ..+ .+- .=.+-.++-.+||.++++|.-. .++.. .++.+..|. .-++.+.|
T Consensus 215 -----~~~~--------~~~--~~~----~~ll~~~lR~~pd~iivgEiR~---~ea~~-~l~a~~tGh---~g~~tT~H 268 (323)
T d1g6oa_ 215 -----QLFF--------GGN--ITS----ADCLKSCLRMRPDRIILGELRS---SEAYD-FYNVLCSGH---KGTLTTLH 268 (323)
T ss_dssp -----EEEC--------BTT--BCH----HHHHHHHTTSCCSEEEESCCCS---THHHH-HHHHHHTTC---SCEEEEEC
T ss_pred -----EECC--------CCC--HHH----HHHHHHHHCCCCCCCCCCCCCC---HHHHH-HHHHHHHCC---CCEEEEEC
T ss_conf -----0014--------654--249----9999997434998545786674---65999-999998169---85799878
Q ss_pred CCCHHH
Q ss_conf 966043
Q 000351 799 QLHFLS 804 (1623)
Q Consensus 799 ~~~~l~ 804 (1623)
.-+...
T Consensus 269 a~s~~~ 274 (323)
T d1g6oa_ 269 AGSSEE 274 (323)
T ss_dssp CSSHHH
T ss_pred CCCHHH
T ss_conf 799999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.60 E-value=0.024 Score=31.13 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9997899557998954599886034548873799979
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 1301 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG 1301 (1623)
.|+.|.|.|++||||||+.+.|.+.+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.2 Score=23.22 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 9969999588889998879999999998839948999603801343
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1438 (1623)
Q Consensus 1393 ~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~ 1438 (1623)
+.+++++||+-. +.......+.+.+.+...++..|+++++.+-+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 724999424333-454311122100221356643000102111002
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.56 E-value=0.037 Score=29.57 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++++|++|+|||||++.|+|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.21 Score=23.09 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 93899999999987029989998176667698889999999984520996899982796604
Q 000351 742 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 803 (1623)
Q Consensus 742 SGGQkqRiaLARal~~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~t~ilvth~~~~l 803 (1623)
.+.++..+..+...+.++++++++-.-+.-+.......+...+.....++.+|+|-+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~ 125 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 125 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
T ss_conf 52024789999999874133201102565420345554445554201410102046544433
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.39 E-value=0.034 Score=29.93 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 969999907999946799988088668
Q 000351 643 GSLVAIVGGTGEGKTSLISAMLGELPP 669 (1623)
Q Consensus 643 G~~~~ivG~~GsGKSTLl~~llG~~~~ 669 (1623)
|.+++|+||+||||||+.+.|..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.16 E-value=0.015 Score=32.90 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=14.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 996999990799994679998808866
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
+|+.++++|++|.|||||+++|+|+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 356499987787348789875151767
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.89 E-value=0.048 Score=28.62 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7899557998954599886034548
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVEL 1292 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p 1292 (1623)
.|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.049 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999789955799895459988603454
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
.|..+.|+||||+||+||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.62 E-value=0.076 Score=26.88 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99699999079999467999880886
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.|+++++.|++||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.59 E-value=0.072 Score=27.06 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799978995579989545998860345
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
|+|-+|.|.|++||||||+.+.|..-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.53 E-value=0.083 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=13.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999789955799895459988603
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~r 1288 (1623)
+.|..|-+.|.+||||||+.+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986999989999998999999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.52 E-value=0.26 Score=22.29 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=15.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 3499699999079999467999880886
Q 000351 640 IPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 640 i~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
+++..-+.+.||.|+|||++.++++++.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9988757887899876304778878771
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=0.043 Score=28.98 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 789955799895459988603454
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
.|||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.27 Score=22.15 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=74.2
Q ss_pred CCEEEEEEEEECCC-----CCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCC-CCCCCCCEEEECCCEEEECC
Q ss_conf 91899836998189-----9999830011157349969999907999946799988088-66899874887391899816
Q 000351 613 PAISIRNGYFSWDS-----KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE-LPPVSDASAVIRGTVAYVPQ 686 (1623)
Q Consensus 613 ~~I~~~~vsf~~~~-----~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~-~~~~~G~~~~~~~~iay~~Q 686 (1623)
+.++++++. .+ ..++.+=.|+++. +.+....|.|||.+||||+++.+.=- +-...|..+ ...-+-++-
T Consensus 10 ~~l~i~~~r---HPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~V--pA~~a~~~~ 83 (234)
T d1wb9a2 10 PGIRITEGR---HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV--PAQKVEIGP 83 (234)
T ss_dssp SCEEEEEEC---CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECC
T ss_pred CCEEEEEEE---CCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEE--ECCCEECCC
T ss_conf 968999737---87797446998264057988-995399995467313689999879999998729767--417666134
Q ss_pred CCCCC-CCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 86567-62289997049999989999999980864688219999962006899856938999999999870299899981
Q 000351 687 VSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 765 (1623)
Q Consensus 687 ~~~l~-~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~di~~l~~g~~t~ig~~g~~LSGGQkqRiaLARal~~~~~illLD 765 (1623)
-..++ .-...|++.-|...=. .+-+|++-.---..+..++|+|
T Consensus 84 ~d~I~~~~~~~d~~~~~~S~F~------------------------------------~E~~~~~~il~~~~~~sLvliD 127 (234)
T d1wb9a2 84 IDRIFTRVGAADDLASGRSTFM------------------------------------VEMTETANILHNATEYSLVLMD 127 (234)
T ss_dssp CCEEEEEEC-----------CH------------------------------------HHHHHHHHHHHHCCTTEEEEEE
T ss_pred CHHHEEEECCCCCCCCCHHHHH------------------------------------HHHHHHHHHHHHCCCCCEEEEC
T ss_conf 4202348746753436531899------------------------------------9999999999745466088532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEECCCCCHH
Q ss_conf 7666769888999999998452-09-96899982796604
Q 000351 766 DPLSALDAHVGRQVFDRCIRGE-LS-GKTRVLVTNQLHFL 803 (1623)
Q Consensus 766 ep~s~LD~~~~~~i~~~~~~~~-~~-~~t~ilvth~~~~l 803 (1623)
|+.++=++.-+..+...++..+ .+ +..++++||.....
T Consensus 128 E~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 128 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp SCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 2235877456667898764543204544289852468776
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.05 Score=28.45 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=12.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9699999079999467999880886
Q 000351 643 GSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 643 G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.-+++|+|+.|+|||||+..+...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289743899998999999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.058 Score=27.89 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCC
Q ss_conf 7899557998954599886034548873799979736998958764205888477766
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 1325 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~l 1325 (1623)
.|||.|++||||||+.+.|...+.... +. .-...+.++++|.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~~------------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--VD------------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--SC------------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--CC------------CCCCCEEEEECCCCC
T ss_conf 999989997879999999999964101--34------------578843999346532
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.25 E-value=0.27 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999789955799895459988603454887379997
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 1300 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~Id 1300 (1623)
+-..|.|+||.||||||+...|..-| |-+.|+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.084 Score=26.50 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 996999990799994679998808866
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
+|.+++|+||+|+||+||.+.|+-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.06 E-value=0.068 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=14.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499699999079999467999880886
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
++|.++.++|.+||||||+.+.|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=90.99 E-value=0.094 Score=26.07 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 69999907999946799988088
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+++.++|++||||||+.+.|..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.96 E-value=0.055 Score=28.06 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.93 E-value=0.07 Score=27.18 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
.|+|+|++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.89 E-value=0.29 Score=21.83 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=16.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999789955799895459988603454
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
.+..+++|||||+||||.+.=|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=90.86 E-value=0.064 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.14 Score=24.57 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=33.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCC
Q ss_conf 99999079999467999880886689987488739189981686567622
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 694 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~l~~~T 694 (1623)
+++|.|++||||||+.+.|...+....+ ...+..++++.+.....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~~~v~~Is~D~F~~~~~ 126 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLHPNQ 126 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEEEEEEEECCCH
T ss_conf 9999689999876899999999730468-----99659995215689845
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.052 Score=28.29 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=24.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 69999907999946799988088668998
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGELPPVSD 672 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~~~~~~G 672 (1623)
..+.|+|++|+|||||++.+...+....+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~ 30 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 69999889997199999999999997799
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.59 E-value=0.031 Score=30.25 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99978995579989545998860345488737999
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~I 1299 (1623)
+|++..++|+||.|||||++.|.+-.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.54 E-value=0.096 Score=25.99 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99789955799895459988603454
Q 000351 1266 SDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1266 GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
...|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.50 E-value=0.31 Score=21.56 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=13.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 978995579989545998860345
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
..+.+|||||+||||.+.=|...+
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.41 E-value=0.32 Score=21.51 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=27.6
Q ss_pred CCCCEEE-EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3111026-86799978995579989545998860345
Q 000351 1255 VLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1255 vL~~isl-~I~~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
-|+.+-- -+++|..+-|.|++|+|||++..-+..-.
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7988456898698499999189999999999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.29 E-value=0.095 Score=26.03 Aligned_cols=21 Identities=48% Similarity=0.752 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 789955799895459988603
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~r 1288 (1623)
+|+|+|++|+|||||++.|+|
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999989999999967
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=90.29 E-value=0.08 Score=26.66 Aligned_cols=24 Identities=54% Similarity=0.594 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 997899557998954599886034
Q 000351 1266 SDKVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1266 GekvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
|=||+++|++|+|||||++.|.+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.058 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 78995579989545998860345488737999
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILI 1299 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~I 1299 (1623)
.++|+|++|||||||++.|.+.+....-++.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v 35 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999189998999999999999977976877
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.08 E-value=0.1 Score=25.76 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
+|+++|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.066 Score=27.40 Aligned_cols=22 Identities=55% Similarity=0.694 Sum_probs=12.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
+|+|+|++++|||||++.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.95 E-value=0.1 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 9789955799895459988603454887
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIVELER 1294 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~~p~~ 1294 (1623)
..|+|.|+.||||||+.+.|...+....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8899989999898999999999998769
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.92 E-value=0.067 Score=27.37 Aligned_cols=21 Identities=52% Similarity=0.789 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 899557998954599886034
Q 000351 1269 VGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1269 vgIvGrsGSGKSTLl~lL~rl 1289 (1623)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=89.88 E-value=0.14 Score=24.51 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 789955799895459988603454
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
.|+|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.76 E-value=0.07 Score=27.17 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 978995579989545998860345
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
.+|+|.|++|||||||++.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.11 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=16.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799978995579989545998860345
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.52 E-value=0.12 Score=25.25 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
.|+|+|++|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=89.41 E-value=0.14 Score=24.56 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4996999990799994679998808866
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
|+|-.++|.|++||||||+.+.|.-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=89.40 E-value=0.13 Score=24.77 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+|+++|++|+||||+++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.35 E-value=0.1 Score=25.84 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4996999990799994679998808866
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
++.-+++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.33 E-value=0.38 Score=20.86 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=15.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9789955799895459988603454
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
..+.+|||+|+||||.+.=|...+.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999998999999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.28 E-value=0.14 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999789955799895459988603454
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
++|-.|.|+|.+||||||+.+.|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.20 E-value=0.18 Score=23.54 Aligned_cols=30 Identities=47% Similarity=0.642 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 789955799895459988603454887379
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRI 1297 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I 1297 (1623)
+|||+|++|+|||||+++|+|.-.-..|.+
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~ 87 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 87 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 799989999978999999958886777567
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.19 E-value=0.39 Score=20.79 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=32.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 9969999588889998879999999998839948999603801343
Q 000351 1393 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1438 (1623)
Q Consensus 1393 ~p~ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHrl~ti~ 1438 (1623)
+.+++++||.- .+.......+.+.|.+..+..-++++++....+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf 71899996632-0002378999988631120023201267087759
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.04 E-value=0.1 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 699999079999467999880886689
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGELPPV 670 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~~~~~ 670 (1623)
..++|+|.+|||||||+..|+.++...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.90 E-value=0.18 Score=23.73 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799978995579989545998860345
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
|+|-++.|+||.||||||+.+.|..-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=88.84 E-value=0.15 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499699999079999467999880886
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
..+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.77 E-value=0.38 Score=20.88 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=10.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999990799994679998808
Q 000351 645 LVAIVGGTGEGKTSLISAMLG 665 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG 665 (1623)
+++++|..|+|||||++.+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=88.55 E-value=0.13 Score=24.90 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 978995579989545998860345
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.16 Score=24.15 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 978995579989545998860345
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
..+.|+||||+||+||.+.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=0.43 Score=20.41 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
.+.+|||||+||||.+.=|...+
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.35 E-value=0.16 Score=24.13 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 9999907999946799988088668
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELPP 669 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~~ 669 (1623)
+++|.|++|||||||.+.|.-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.29 E-value=0.43 Score=20.33 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 867999789955799895459988603454
Q 000351 1262 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1262 ~I~~GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
.+++..-+-+.||+|+|||++++++.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.25 E-value=0.2 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499699999079999467999880886
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
|+|-.++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.22 E-value=0.15 Score=24.30 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 789955799895459988603
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~r 1288 (1623)
+|+|+|++|+|||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999889999999967
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=88.04 E-value=0.16 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999907999946799988088
Q 000351 645 LVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+++++|..|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.01 E-value=0.14 Score=24.58 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89955799895459988603454
Q 000351 1269 VGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1269 vgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
|.|+|||||||+||.+.|....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=88.00 E-value=0.16 Score=24.15 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 7899557998954599886034548873799979
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 1301 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG 1301 (1623)
.|.|+|++||||||+.+.|.+.+. +...++|
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 899989999998999999999809---9889830
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=87.97 E-value=0.2 Score=23.30 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9699999079999467999880886
Q 000351 643 GSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 643 G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
+=.++++|.+|+|||||+++|+|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=87.90 E-value=0.17 Score=23.80 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.81 E-value=0.17 Score=23.95 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999907999946799988088
Q 000351 645 LVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+++++|+.|+|||||++.+.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.80 E-value=0.17 Score=23.90 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89955799895459988603
Q 000351 1269 VGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1269 vgIvGrsGSGKSTLl~lL~r 1288 (1623)
|||+|+..+|||||++.|.+
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.67 E-value=0.17 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999907999946799988088
Q 000351 645 LVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+++++|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.52 E-value=0.13 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9699999079999467999880886
Q 000351 643 GSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 643 G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
-+.++|.|+.|||||||.+.|...+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=87.39 E-value=0.49 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=15.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9978995579989545998860345
Q 000351 1266 SDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1266 GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
...+-+.||.|+|||++++.+.+.+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 8867866899888228999999982
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.97 E-value=0.16 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
.|||.|+.|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.21 Score=23.03 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=30.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCC
Q ss_conf 99999079999467999880886689987488739189981686567
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF 691 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~l~ 691 (1623)
+++|.|++||||||+.+.|.-.+... + .......+..++++.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~-~-~~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN-E-VDYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG-G-SCGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHH-C-CCCCCCCEEEEECCCCCC
T ss_conf 99998999787999999999996410-1-345788439993465322
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=86.83 E-value=0.2 Score=23.17 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
.|-|+|++||||||+.+.|...+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.80 E-value=0.2 Score=23.28 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8995579989545998860345
Q 000351 1269 VGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1269 vgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
|.|+|||||||+|+.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=86.80 E-value=0.19 Score=23.48 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 96999990799994679998808866
Q 000351 643 GSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 643 G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
..++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.78 E-value=0.22 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 96999990799994679998808866899
Q 000351 643 GSLVAIVGGTGEGKTSLISAMLGELPPVS 671 (1623)
Q Consensus 643 G~~~~ivG~~GsGKSTLl~~llG~~~~~~ 671 (1623)
..+++|.|+.||||||+.+.|.-.+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.78 E-value=0.21 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999990799994679998808866
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
.++++|++|+|||||++.|.|+-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.17 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 96999990799994679998808866
Q 000351 643 GSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 643 G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
...++|+||+|+||+||.+.|+.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.73 E-value=0.25 Score=22.47 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99978995579989545998860345
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+.-||.+||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=86.61 E-value=0.24 Score=22.63 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999990799994679998808866
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
.++++|+.|+|||||++.|.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=86.56 E-value=0.16 Score=24.16 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 6999990799994679998808866
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
.++.|+|++||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=86.48 E-value=0.26 Score=22.24 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++++|.+|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=0.074 Score=26.97 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=11.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9969999907999946799988088
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+|..+.++|++||||||+.+.|.-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=86.28 E-value=0.23 Score=22.77 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 789955799895459988603
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~r 1288 (1623)
.|||+|..||||||+...|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=86.25 E-value=0.55 Score=19.46 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
.+.++||+|+||||.+.=|...+
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.24 E-value=0.16 Score=24.10 Aligned_cols=40 Identities=8% Similarity=0.219 Sum_probs=27.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCC
Q ss_conf 69999907999946799988088668998748873918998168656
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 690 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~l 690 (1623)
-+++|.|++||||||+.+.+...+.. .| -+++.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~-~~------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRR-EG------VKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHH-HT------CCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CC------CCEEEEECCCCC
T ss_conf 89999899978099999999999715-69------976999477787
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.15 E-value=0.55 Score=19.42 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99999079999467999880
Q 000351 645 LVAIVGGTGEGKTSLISAML 664 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~ll 664 (1623)
+++++|..|+|||||++.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989929899999997
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.12 E-value=0.36 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999990799994679998808866
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
+++++|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.92 E-value=0.062 Score=27.65 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
||+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.86 E-value=0.31 Score=21.59 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=18.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7349969999907999946799988088
Q 000351 639 DIPVGSLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 639 ~i~~G~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
.+++|+++.|.|++|||||+|+.-++..
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.82 E-value=0.21 Score=22.99 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 7899557998954599886034548873799979
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 1301 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG 1301 (1623)
-+-+.||+|+||||+++.|.+.+. .+-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 999889799889999999999865--15489832
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.81 E-value=0.22 Score=22.91 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=12.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9978995579989545998860345
Q 000351 1266 SDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1266 GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+..|+|-|+.||||||++++|...+
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998788877999999999997
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.77 E-value=0.33 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86799978995579989545998860345
Q 000351 1262 TIPPSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1262 ~I~~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
-+++|+.+-|.||+|+||||+..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.74 E-value=0.29 Score=21.83 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7349969999907999946799988088
Q 000351 639 DIPVGSLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 639 ~i~~G~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
.-++-+++.++|+.||||||+.+.++..
T Consensus 10 ~~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 10 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SCSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7999989999899999899999999976
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.60 E-value=0.59 Score=19.22 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=62.6
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHC-C-CCCCCCH
Q ss_conf 78995579989545998860---34548873799979736998958764205888477766666577603-7-7999999
Q 000351 1268 KVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-D-PFSEHSD 1342 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~---rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~lf~gTIr~NL-d-~~~~~~d 1342 (1623)
.|||+|..|||||||+..|+ |..+ ..|++. +|..+.+.......+.+++-..-..+--..-+.|+ | |+...--
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598389995278602269
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEE---EECCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999932899998624895026302999889458999979996402996999---958888999887999999999
Q 000351 1343 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV---LDEATAAVDVRTDALIQKTIR 1419 (1623)
Q Consensus 1343 ~~i~~aL~~~~l~~~i~~lp~gLdt~v~e~g~~LSgGQrQrL~LARALLr~p~ILi---LDEpTs~LD~~Te~~I~~~L~ 1419 (1623)
.+...++..+.. --.+-+.....-.+-++..-.|+.. +-|.|+. ||-+-++. ..+.+.|+
T Consensus 86 ~e~~~~l~~~D~-----------avlVvda~~Gv~~~T~~~w~~a~~~-~lP~i~fINKmDr~~ad~-----~~~l~ei~ 148 (276)
T d2bv3a2 86 IEVERSMRVLDG-----------AIVVFDSSQGVEPQSETVWRQAEKY-KVPRIAFANKMDKTGADL-----WLVIRTMQ 148 (276)
T ss_dssp TTHHHHHHHCCE-----------EEEEEETTTSSCHHHHHHHHHHHTT-TCCEEEEEECTTSTTCCH-----HHHHHHHH
T ss_pred HHHHHHHHHHHH-----------EEEECCCCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCC-----CHHHHHHH
T ss_conf 999999996300-----------5773225677446699999999985-999799986445654312-----12689999
Q ss_pred HHCC
Q ss_conf 8839
Q 000351 1420 EEFK 1423 (1623)
Q Consensus 1420 ~~~~ 1423 (1623)
+.+.
T Consensus 149 ~~l~ 152 (276)
T d2bv3a2 149 ERLG 152 (276)
T ss_dssp HTTC
T ss_pred HHHC
T ss_conf 9859
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=0.013 Score=33.53 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 11102686799978995579989545998860345
Q 000351 1256 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1256 L~~isl~I~~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+++.++.+.+| .+.|+|+|||||||++.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 70279974998-08998899998799999999996
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.46 E-value=0.26 Score=22.24 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 789955799895459988603454
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
.|.++|++||||||+.+.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.45 E-value=0.31 Score=21.57 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=17.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 978995579989545998860345
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
..|.|+||.||||||+...|..-+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.33 E-value=0.27 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499699999079999467999880886
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.+..+++|+||.||||||+.+.|.-.+
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899489998999998899999999997
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=85.21 E-value=0.3 Score=21.71 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 78995579989545998860
Q 000351 1268 KVGIVGRTGAGKSSMLNTLF 1287 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~ 1287 (1623)
.|||.|..||||||+.+.|-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.17 E-value=0.3 Score=21.76 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
+++|-|..||||||+++.|...+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=85.09 E-value=0.27 Score=22.15 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=84.70 E-value=0.44 Score=20.27 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3111026867999789955799895459988603
Q 000351 1255 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 1288 (1623)
Q Consensus 1255 vL~~isl~I~~GekvgIvGrsGSGKSTLl~lL~r 1288 (1623)
.++.-.+.+ .|.-+.|+|+||+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.53 E-value=0.44 Score=20.29 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=14.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86799978995579989545998860345
Q 000351 1262 TIPPSDKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1262 ~I~~GekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
-++.|..+-|-|++||||||+...+....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 86675478980587652279999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.51 E-value=0.28 Score=21.93 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++|+|+.|+|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.51 E-value=0.65 Score=18.84 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99999079999467999880
Q 000351 645 LVAIVGGTGEGKTSLISAML 664 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~ll 664 (1623)
+++++|..|+|||||++.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989958899999997
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=84.47 E-value=0.32 Score=21.50 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=19.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 49969999907999946799988088
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
++.-+++++|..|+|||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.46 E-value=0.21 Score=23.04 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999990799994679998808866
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
.++|+||+||||+||.+.|+.+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=84.37 E-value=0.54 Score=19.52 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
||.++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.27 E-value=0.34 Score=21.20 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999907999946799988088
Q 000351 645 LVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
-++++|+.|+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=84.16 E-value=0.012 Score=33.93 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=27.5
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 30011157349969999907999946799988088
Q 000351 632 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 632 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
.+++.++.+.+| +++|+|+|||||||++.+|.--
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=84.07 E-value=0.32 Score=21.47 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 699999079999467999880886
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
..+.++|++||||||+.+.|.-.+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.04 E-value=0.38 Score=20.79 Aligned_cols=23 Identities=39% Similarity=0.756 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++++|.+|+|||||+++|.|.-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.01 E-value=0.26 Score=22.31 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 996999990799994679998808866
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=83.99 E-value=0.24 Score=22.58 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
-++|+|++++|||||++.|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.94 E-value=0.63 Score=18.93 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=20.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 734996999990799994679998808
Q 000351 639 DIPVGSLVAIVGGTGEGKTSLISAMLG 665 (1623)
Q Consensus 639 ~i~~G~~~~ivG~~GsGKSTLl~~llG 665 (1623)
.+++|+.+.|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=83.83 E-value=0.26 Score=22.24 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99990799994679998808866
Q 000351 646 VAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 646 ~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
++++|++++|||||++.|.|.-.
T Consensus 4 VaivG~~nvGKSTLin~L~~~~~ 26 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAHP 26 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999968997
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=83.82 E-value=0.35 Score=21.12 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 978995579989545998860345
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
-.|+|-|..||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.79 E-value=0.46 Score=20.13 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=16.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99699999079999467999880886
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
+|.++++-|+-||||||+.+.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.77 E-value=0.47 Score=20.04 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=16.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999789955799895459988603454
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
++|-.|+|.|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.55 E-value=0.46 Score=20.15 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 49969999907999946799988088668
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGELPP 669 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~~~ 669 (1623)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.42 E-value=0.17 Score=23.90 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9997899557998954599886034548
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 1292 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p 1292 (1623)
+|-.|-++|++||||||+.+.|...+..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.38 E-value=0.35 Score=21.17 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999990799994679998808866
Q 000351 645 LVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
.++|+||+||||+|+.+.|+-+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=83.38 E-value=0.43 Score=20.36 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 999789955799895459988603454887379997973
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 1303 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~d 1303 (1623)
..-+|||.|+.|||||||+..|.+.+....-+|-+=-+|
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD 91 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 832897438999989999999999997569833220377
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=83.27 E-value=0.4 Score=20.61 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+|+|-||.||||||..+.|..-+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.16 E-value=0.36 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499699999079999467999880886
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
++-..++|+||.||||||+.+.|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.14 E-value=0.38 Score=20.81 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99990799994679998808
Q 000351 646 VAIVGGTGEGKTSLISAMLG 665 (1623)
Q Consensus 646 ~~ivG~~GsGKSTLl~~llG 665 (1623)
++++|..|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999973
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.10 E-value=0.44 Score=20.29 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++|+|...+|||||+++|+|+-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=0.34 Score=21.22 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=21.5
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 1573499699999079999467999880886
Q 000351 637 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 637 ~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
=+.+-+|++.+|.|+.|+|||+|+..+....
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2564578755686799988789999999977
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=83.04 E-value=0.28 Score=22.01 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 996999990799994679998808866
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
..-.++++|++++|||||+++|.|.-.
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 697899988999989999999858985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=82.96 E-value=0.39 Score=20.75 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 789955799895459988603454887379997
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILID 1300 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~Id 1300 (1623)
.|.|+|++||||||+.+.|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.95 E-value=0.38 Score=20.82 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=23.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 67999789955799895459988603454887379997
Q 000351 1263 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 1300 (1623)
Q Consensus 1263 I~~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~Id 1300 (1623)
++.+..|-|.||.||||||+.+.|..-+ |-..|+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 4678289998999998799999999986----984683
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.94 E-value=0.39 Score=20.74 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999907999946799988088
Q 000351 645 LVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+++++|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.83 E-value=0.34 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+|.|.||.||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.82 E-value=0.4 Score=20.64 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
.|||+|+..+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.82 E-value=0.41 Score=20.56 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 58999979996402996--99995888899988799999999988399489996038
Q 000351 1379 GQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 1433 (1623)
Q Consensus 1379 GQrQrL~LARALLr~p~--ILiLDEpTs~LD~~Te~~I~~~L~~~~~~~TvI~IaHr 1433 (1623)
.+.+-..+++..++++. |++...++..........+.+.+... ..+|++++++-
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL 208 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC
T ss_conf 899999999999827775168763256310034999999973867-88589998204
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.79 E-value=0.42 Score=20.44 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++|+|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=82.63 E-value=0.48 Score=19.98 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
+++|.||.||||+|+.+.|...+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=82.49 E-value=0.36 Score=21.03 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
||+|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=82.41 E-value=0.42 Score=20.42 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 69999907999946799988088
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
-+++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=82.33 E-value=0.37 Score=20.95 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
||.|+|++|+|||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.23 E-value=0.47 Score=20.05 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.13 E-value=0.47 Score=20.04 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 78995579989545998860345488737999797369989587642058884777666665776037799999989999
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 1347 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~~vpQdp~lf~gTIr~NLd~~~~~~d~~i~~ 1347 (1623)
+|.|.||.||||||..+.|..-+ |-..|+- -+-+|..+ .+....+...+.+.+.-.....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHH
Q ss_conf 9999
Q 000351 1348 ALER 1351 (1623)
Q Consensus 1348 aL~~ 1351 (1623)
.+..
T Consensus 69 ~~~~ 72 (194)
T d1teva_ 69 LLKR 72 (194)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8887
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.13 E-value=0.57 Score=19.28 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=14.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999789955799895459988603454
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVE 1291 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~ 1291 (1623)
+|.-|+|-|.-||||||++++|...++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=82.13 E-value=0.48 Score=19.98 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 78995579989545998860
Q 000351 1268 KVGIVGRTGAGKSSMLNTLF 1287 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~ 1287 (1623)
.|||+|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=82.04 E-value=0.48 Score=19.96 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+|.|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.92 E-value=0.8 Score=18.06 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999907999946799988088
Q 000351 645 LVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+++++|..|+|||||++.+++.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.88 E-value=0.45 Score=20.19 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99999079999467999880
Q 000351 645 LVAIVGGTGEGKTSLISAML 664 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~ll 664 (1623)
+++++|..|+|||||++.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~ 23 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYV 23 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.88 E-value=0.8 Score=18.05 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 70299899981766676-98889999999984520-99689998279
Q 000351 755 VYSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGEL-SGKTRVLVTNQ 799 (1623)
Q Consensus 755 l~~~~~illLDep~s~L-D~~~~~~i~~~~~~~~~-~~~t~ilvth~ 799 (1623)
.+...+++++||.=.-. +...+..+++ ++.... .++.+|+++..
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCC
T ss_conf 8762130101126550586577889999-999876316638995487
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=81.72 E-value=0.45 Score=20.19 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 978995579989545998860345
Q 000351 1267 DKVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1267 ekvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
+.|-++|+.||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.65 E-value=0.55 Score=19.43 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78995579989545998860345
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRIV 1290 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl~ 1290 (1623)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.65 E-value=0.43 Score=20.37 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
|++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.60 E-value=0.48 Score=19.96 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7899557998954599886034
Q 000351 1268 KVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1268 kvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
+|||||..-+|||||+++|.+.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=81.46 E-value=0.53 Score=19.58 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99999079999467999880
Q 000351 645 LVAIVGGTGEGKTSLISAML 664 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~ll 664 (1623)
+++|+|+.||||||+.+.+-
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=81.40 E-value=0.48 Score=19.96 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99999079999467999880886
Q 000351 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
-++|+|++.+|||||++.|+|.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=81.31 E-value=0.33 Score=21.33 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=14.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9969999907999946799988088
Q 000351 642 VGSLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 642 ~G~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+.-.++|.|+.|+|||||+..+...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8159861179988899999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.15 E-value=0.46 Score=20.09 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 999789955799895459988603454887379997973
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 1303 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p~~G~I~IdG~d 1303 (1623)
|+.-+.++||+|+|||.|.++|.+.+. .--+.+|+-+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC--CCHHCCCCCC
T ss_conf 986699989999888899999862132--2100034433
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=81.15 E-value=0.61 Score=19.07 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79997899557998954599886034
Q 000351 1264 PPSDKVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1264 ~~GekvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
++.=||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=81.10 E-value=0.57 Score=19.35 Aligned_cols=20 Identities=35% Similarity=0.745 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99999079999467999880
Q 000351 645 LVAIVGGTGEGKTSLISAML 664 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~ll 664 (1623)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=81.05 E-value=0.65 Score=18.82 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=15.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99978995579989545998860
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLF 1287 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~ 1287 (1623)
.|.-|.|+|+||+||||+...|.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999998089999899999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.04 E-value=0.51 Score=19.73 Aligned_cols=20 Identities=35% Similarity=0.704 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99990799994679998808
Q 000351 646 VAIVGGTGEGKTSLISAMLG 665 (1623)
Q Consensus 646 ~~ivG~~GsGKSTLl~~llG 665 (1623)
++++|..|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.00 E-value=0.51 Score=19.72 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9999079999467999880
Q 000351 646 VAIVGGTGEGKTSLISAML 664 (1623)
Q Consensus 646 ~~ivG~~GsGKSTLl~~ll 664 (1623)
++++|..|+|||||++.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989959899999998
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=80.98 E-value=0.65 Score=18.84 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCC
Q ss_conf 4996999990799994679998808866899874887391899816865
Q 000351 641 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 689 (1623)
Q Consensus 641 ~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~~~~~~~~iay~~Q~~~ 689 (1623)
+++..++++||+|+||||.+--|...+. ..| .+++.+.=+.+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g------~kV~lit~Dt~ 45 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG------KKVMFCAGDTF 45 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTT------CCEEEECCCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CCEEEEEECCC
T ss_conf 9977999989999988999999999999-779------90799981366
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.92 E-value=0.85 Score=17.80 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=21.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7349969999907999946799988088
Q 000351 639 DIPVGSLVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 639 ~i~~G~~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
.+++|+.+.|.|+.|||||||..-++-.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9869969999838999889999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=80.70 E-value=0.64 Score=18.90 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.9
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 1573499699999079999467999880886
Q 000351 637 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 637 ~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.+.-++|..+.+.|.+||||||+.+.|.-.+
T Consensus 18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9858998699998999999899999999887
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.62 E-value=0.56 Score=19.36 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 6999990799994679998808866
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGELP 668 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~~~ 668 (1623)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.52 E-value=0.62 Score=18.98 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=18.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 73499699999079999467999880
Q 000351 639 DIPVGSLVAIVGGTGEGKTSLISAML 664 (1623)
Q Consensus 639 ~i~~G~~~~ivG~~GsGKSTLl~~ll 664 (1623)
.+++|+.+.|.|++|||||||..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=80.51 E-value=0.88 Score=17.69 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 997899557998954599886034
Q 000351 1266 SDKVGIVGRTGAGKSSMLNTLFRI 1289 (1623)
Q Consensus 1266 GekvgIvGrsGSGKSTLl~lL~rl 1289 (1623)
+-|+||||-.-+|||||+++|.+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.51 E-value=0.66 Score=18.74 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9997899557998954599886034548
Q 000351 1265 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 1292 (1623)
Q Consensus 1265 ~GekvgIvGrsGSGKSTLl~lL~rl~~p 1292 (1623)
+|..|.|-|+-||||||++..|...++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.50 E-value=0.6 Score=19.13 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999907999946799988088
Q 000351 645 LVAIVGGTGEGKTSLISAMLGE 666 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG~ 666 (1623)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.46 E-value=0.55 Score=19.44 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 699999079999467999880886
Q 000351 644 SLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 644 ~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
..++|+|+.++|||+||+.+.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.35 E-value=0.4 Score=20.61 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=25.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 73499699999079999467999880886
Q 000351 639 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1623)
Q Consensus 639 ~i~~G~~~~ivG~~GsGKSTLl~~llG~~ 667 (1623)
.++++.++.+.||.||||||+.+.|.-.+
T Consensus 4 ~~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 4 KLKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 24678289998999998799999999986
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=80.25 E-value=0.56 Score=19.37 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999990799994679998808
Q 000351 645 LVAIVGGTGEGKTSLISAMLG 665 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG 665 (1623)
+++++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.10 E-value=0.9 Score=17.59 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999990799994679998808
Q 000351 645 LVAIVGGTGEGKTSLISAMLG 665 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG 665 (1623)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.10 E-value=0.9 Score=17.59 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999990799994679998808
Q 000351 645 LVAIVGGTGEGKTSLISAMLG 665 (1623)
Q Consensus 645 ~~~ivG~~GsGKSTLl~~llG 665 (1623)
+++++|..|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|