Citrus Sinensis ID: 000361
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1617 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NTI5 | 1447 | Sister chromatid cohesion | yes | no | 0.626 | 0.700 | 0.248 | 2e-72 | |
| Q5F3U9 | 1412 | Sister chromatid cohesion | yes | no | 0.625 | 0.716 | 0.249 | 2e-72 | |
| Q4VA53 | 1446 | Sister chromatid cohesion | yes | no | 0.626 | 0.700 | 0.246 | 7e-72 | |
| Q5U241 | 1464 | Sister chromatid cohesion | N/A | no | 0.627 | 0.692 | 0.242 | 1e-71 | |
| Q6TRW4 | 1447 | Sister chromatid cohesion | yes | no | 0.626 | 0.700 | 0.246 | 2e-71 | |
| Q498H0 | 1448 | Sister chromatid cohesion | N/A | no | 0.627 | 0.700 | 0.243 | 2e-70 | |
| Q29RF7 | 1337 | Sister chromatid cohesion | no | no | 0.628 | 0.760 | 0.245 | 1e-66 | |
| A4L9P7 | 1333 | Sister chromatid cohesion | no | no | 0.628 | 0.762 | 0.244 | 2e-66 | |
| A1L1F4 | 1320 | Sister chromatid cohesion | no | no | 0.617 | 0.756 | 0.244 | 4e-66 | |
| Q5F3V3 | 1330 | Sister chromatid cohesion | no | no | 0.629 | 0.765 | 0.245 | 2e-65 |
| >sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1 | Back alignment and function desciption |
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Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 271/1090 (24%), Positives = 492/1090 (45%), Gaps = 77/1090 (7%)
Query: 9 LKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNA---IVQPVLL 65
+KE+ K+ +K+ +V+ LK +++Q E + +LN + L
Sbjct: 19 VKEISDKI-----SKEEMVRRLKMVVKTFMDMDQDSE----EEKELYLNLALHLASDFFL 69
Query: 66 KHQDKDVKLLVATCICEITRITAPEAPY-SDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV 124
KH DKDV+LLVA C+ +I RI APEAPY S D LKDIF I GL+DT P F R
Sbjct: 70 KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 129
Query: 125 VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE 183
+LE +A +S + +LE +E+ ++Y T F+V ++ H + V M +M ++ E +
Sbjct: 130 YLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGD 189
Query: 184 DIQEDLLVILLSAL---GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS-MSGDSRPG 239
+ ++LL +L L +N N A LA ++++ A +E I F M G +
Sbjct: 190 TVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSIS 249
Query: 240 HSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299
++I ++Y +L V+P L +L ++ + RL+ V L+ +F S
Sbjct: 250 DLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELAS 309
Query: 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 359
Q ++ +L R D V +R+ ++ CL+ P A + L R D +E +R
Sbjct: 310 QNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAK--DLTEYLKVRSHDPEEAIR 367
Query: 360 KQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419
V+ I A + + + V ER DK V++ M LA I++ L++ G
Sbjct: 368 HDVIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAGK 427
Query: 420 INQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI 478
+ WI K+L Y +E + + P +R++ +++ D
Sbjct: 428 DAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLN 487
Query: 479 EMKALEKILEQKQRLQQEMQRYLSL-RQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+KAL ++ + + L+ +++ L L +Q D I K++ V++R+ +P KA+
Sbjct: 488 AVKALNEMWKCQNLLRHQVKDLLDLIKQPKTDASVKAIFSKVM----VITRNLPDPGKAQ 543
Query: 538 ENFLILDQL--KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-AKHRLYDFLSTLSM 594
+ Q+ D + K L L+ S QA ++ K LG K FL +
Sbjct: 544 DFMKKFTQVLEDDEKIRKQLEVLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKF 603
Query: 595 ---KCSYLLFNKEHVKEILLEVAAQ---------KSSANAQFMQSCMDILGILARFSPLL 642
+ + + + E + ++ +V + Q +++ +++L +L+ P+
Sbjct: 604 LLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPIS 663
Query: 643 LGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 700
E E L+ LK ++E + E L + G I E S++ +L +G
Sbjct: 664 FHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKSKKGPP 723
Query: 701 RQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFE 758
RQAKYA+H + AI + + +++ L L+ HL L ++G IA A F
Sbjct: 724 RQAKYAIHCIHAIFSSKETQ-FAQIFEPLHKSLDPSNLEHLITPLVTIGHIALLAPDQFA 782
Query: 759 TR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLLKIYGIKTLVKSYLPVKDA 814
+S + FI +L T W ++ S ++KI IK +V+ L +K+
Sbjct: 783 APLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETMVKIQAIKMMVRWLLGMKNN 842
Query: 815 HIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ--WDHKIPVD 872
H + G L + + S G+++E + S D + LRLA+ A+++L+++ + I ++
Sbjct: 843 HSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLE 902
Query: 873 VFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA--CAFLFGITESKSPEFEEE-- 928
+ L Q +++F K+H+ + L +Y CA +K P E
Sbjct: 903 QYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALC-----AKDPVKERRAH 957
Query: 929 -KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKA 987
+Q L I + + + +V S PEY++PY +H AH PD + +D++
Sbjct: 958 ARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYTIHLLAHD--PDYVKVQDIEQ 1013
Query: 988 FELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIV---DAAKSKNS 1044
+ V L+F++ +L+ K+E+ S + I + +IK ++D DA ++
Sbjct: 1014 LKDVKECLWFVLEILMAKNEN--------NSHAFIRKMVENIKQTKDAQGPDDAKMNEKL 1065
Query: 1045 HAICDLGLSI 1054
+ +CD+ ++I
Sbjct: 1066 YTVCDVAMNI 1075
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Regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Plays a role in androgen-induced proliferative arrest in prostate cells. Homo sapiens (taxid: 9606) |
| >sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3 | Back alignment and function description |
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| >sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 | Back alignment and function description |
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| >sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1617 | ||||||
| 147777785 | 1922 | hypothetical protein VITISV_030148 [Viti | 0.972 | 0.818 | 0.645 | 0.0 | |
| 255585406 | 1735 | androgen induced inhibitor of proliferat | 0.974 | 0.908 | 0.633 | 0.0 | |
| 224139450 | 1417 | predicted protein [Populus trichocarpa] | 0.844 | 0.964 | 0.700 | 0.0 | |
| 356522079 | 1641 | PREDICTED: sister chromatid cohesion pro | 0.969 | 0.955 | 0.618 | 0.0 | |
| 356564452 | 1642 | PREDICTED: sister chromatid cohesion pro | 0.967 | 0.953 | 0.605 | 0.0 | |
| 449443672 | 1692 | PREDICTED: sister chromatid cohesion pro | 0.898 | 0.858 | 0.636 | 0.0 | |
| 224089565 | 1411 | predicted protein [Populus trichocarpa] | 0.795 | 0.911 | 0.675 | 0.0 | |
| 356557993 | 1656 | PREDICTED: sister chromatid cohesion pro | 0.971 | 0.948 | 0.581 | 0.0 | |
| 356532370 | 1648 | PREDICTED: sister chromatid cohesion pro | 0.970 | 0.952 | 0.576 | 0.0 | |
| 186530158 | 1607 | sister chromatid cohesion protein PDS5 [ | 0.954 | 0.960 | 0.569 | 0.0 |
| >gi|147777785|emb|CAN75734.1| hypothetical protein VITISV_030148 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 2104 bits (5452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1094/1696 (64%), Positives = 1299/1696 (76%), Gaps = 123/1696 (7%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K +QQL++VGSKLE PP+TKD LVKLLKQAATCL+EL+QSP ASILE++QP LNAIV
Sbjct: 56 MDQKRQQQLRDVGSKLENPPATKDALVKLLKQAATCLTELDQSPSASILESLQPSLNAIV 115
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
+P LLKHQD+DVKLLVATCICEITRITAPEAPYSDDVLKDIF+LIV TFSGL DT GP+F
Sbjct: 116 KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFRLIVSTFSGLSDTNGPAF 175
Query: 121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
GRRVVILETLA+YRSCVVMLDLECD+LVNEM+ TFF+VA DDHPESVL+SMQTIM+VLLE
Sbjct: 176 GRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFFSVARDDHPESVLTSMQTIMVVLLE 235
Query: 181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
ESED++EDLL +LS LGRNK+D ARRLAMNVIE CA KLE GIKQFLVSS+SGD+R
Sbjct: 236 ESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVIEHCAAKLEPGIKQFLVSSISGDNR 295
Query: 238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
+S IDYHEVIYD+YRC+PQILSGV PYLTGELLTD LDTRLKAV LVGDLFA+PG A
Sbjct: 296 SMNSEIDYHEVIYDIYRCAPQILSGVTPYLTGELLTDNLDTRLKAVKLVGDLFALPGLAI 355
Query: 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
+E F +FSEFLKRL DR+V VRMSVLEHVKSCLL++PSRA+APQI++ALCDRLLD+DEN
Sbjct: 356 SEAFQPIFSEFLKRLADRVVGVRMSVLEHVKSCLLSNPSRAEAPQIISALCDRLLDYDEN 415
Query: 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
VRKQVVAVICDVACH+L+SIPVET KLVAERLRDKSVLVK+YT+ERLA+I+ CLR +
Sbjct: 416 VRKQVVAVICDVACHSLSSIPVETXKLVAERLRDKSVLVKKYTLERLAEIYNLYCLRCCD 475
Query: 418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
GS+N +EF+WIPGKILRC YDKDF SDTIESVLC +LFPT FS+KD+V+HWVR+FSGFD+
Sbjct: 476 GSLNPSEFDWIPGKILRCFYDKDFRSDTIESVLCETLFPTEFSIKDKVKHWVRVFSGFDK 535
Query: 478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+E+KALEKILEQKQRLQQEMQRYLSL+QMHQDG+ PEIQKK+ +C R+MSR FA+PAKAE
Sbjct: 536 VEVKALEKILEQKQRLQQEMQRYLSLKQMHQDGEGPEIQKKVTYCLRIMSRLFADPAKAE 595
Query: 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
ENF ILDQLKD N+WKIL +L+D TSF QA + RDDLL+ILG KHRLYDFL TLS+KCS
Sbjct: 596 ENFQILDQLKDVNIWKILSSLIDPKTSFHQACSSRDDLLRILGEKHRLYDFLGTLSLKCS 655
Query: 598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE 657
YLLFNKEHVKE LLE A QKSS N Q++QSCM++L +LARFSPLLL G EE+LV+LLK++
Sbjct: 656 YLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAEEDLVHLLKDD 715
Query: 658 NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
NEIIKEG+LH+LAKAGGTIREQLA TSSSVDL+LERLCLEGSRRQAKYAVHALAAITKDD
Sbjct: 716 NEIIKEGVLHILAKAGGTIREQLAVTSSSVDLILERLCLEGSRRQAKYAVHALAAITKDD 775
Query: 718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 777
GLKSLSVLYKRLVDML++KTHLPAVLQSLGCIAQTAMPVFETRESEIE FIK +IL+CS+
Sbjct: 776 GLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQTAMPVFETRESEIEGFIKCEILKCSS 835
Query: 778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
I+GIKT+VKSYLPVKDAH+R GIDDLL ILK++L +GE+S
Sbjct: 836 --------------------IFGIKTMVKSYLPVKDAHLRLGIDDLLEILKNILLFGEIS 875
Query: 838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
+DIESS+VDKAHLRLA+AKA+LRL+R WDHKIPV VFHLTLRT E SFPQAKKLFLSKVH
Sbjct: 876 KDIESSAVDKAHLRLAAAKAILRLARHWDHKIPVGVFHLTLRTSESSFPQAKKLFLSKVH 935
Query: 898 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
QY+KDRLLDAKYACAF F I S+ EFEE+K NL DIIQM+HQ KARQ+S QSDA+S A
Sbjct: 936 QYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHNLGDIIQMYHQAKARQLSTQSDASSLA 995
Query: 958 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEAS--- 1014
YPE+I+PYLVH AHHSCPDIDECKDVKAFE +Y +L+ +SML+H DED K+EA
Sbjct: 996 -YPEFILPYLVHALAHHSCPDIDECKDVKAFEPIYWKLHIFLSMLVHGDEDTKAEAGADK 1054
Query: 1015 NKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSL 1074
KE IS IISIF+SIK SEDIVDAAKSKNSHA+CDLGLSI KRL + +D+ QG+ SS++L
Sbjct: 1055 EKEGISAIISIFQSIKLSEDIVDAAKSKNSHALCDLGLSIIKRLVQKQDDVQGLTSSITL 1114
Query: 1075 PSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEK 1134
P LYK EKKEGDDS+ASE QTWLADE VLTHFESLKLET+ +V E ++B ++
Sbjct: 1115 PPILYKLCEKKEGDDSVASEGQTWLADEXVLTHFESLKLETNGMVDEE----GVINBNDR 1170
Query: 1135 DGNEVPLGKMIQQLKSQGAKGGKAK-------KKKSSPAEVKV----------------- 1170
DGNE+PLGKMI++LKS+G K K K KKK + +V +
Sbjct: 1171 DGNELPLGKMIKRLKSRGTKSRKVKNKKSSPAKKKHAENDVDILKMVREINFDAMGMSSK 1230
Query: 1171 -----------------------PKRRRSLSA------------HGGFRTPKSNSKAPLR 1195
KRRRS P+S SK +R
Sbjct: 1231 FESSNGHEYSSHRKSKMGQKHEKKKRRRSTEVTPVTVPKRRRSSSAKSSLPRSASKGSVR 1290
Query: 1196 ASGGGSHHAGVSSFQSIDMDDDI-SESEVKISTKKKKFTSNESDSFASRFQGSRSFSSKR 1254
A H AGVSSFQS DMD ++ ++SE K+S K ESD S F+ + +F SKR
Sbjct: 1291 ALRDNLHQAGVSSFQSTDMDSEVHTDSEDKVSALKNIGEPAESDLLVSCFRRNSNFLSKR 1350
Query: 1255 KGKSADLGHDNEADEVGEADEGDLKNSDMLS-----------KSPVGSAKKRKRRSIAGL 1303
KGK +D G ++EA VGE + DL+ ++ KSP GS KKRKRRSIAGL
Sbjct: 1351 KGKGSDKGDNDEARIVGEDXDHDLRKPNVPMETDKIHTASNVKSPTGSTKKRKRRSIAGL 1410
Query: 1304 AKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 1363
AK T+K + DLI RIKVWWPMDKQFYEG +KSYDP +KHV+LYDD DVEVLRL
Sbjct: 1411 AKSTSKEGRSHAADLIDCRIKVWWPMDKQFYEGXVKSYDPKARKHVVLYDDGDVEVLRLA 1470
Query: 1364 KERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKSMKD-----KGKR 1418
+ERWEL++N KP K K NS K VS+ +KNK G++QNKK +K +GKR
Sbjct: 1471 RERWELVENVAKPAK--KLNSSKTPPSKGVSADQKNKFLNGSQQNKKPIKSSSSKVRGKR 1528
Query: 1419 TPKKSLKDRPKFA----SKSYFSEDEDSEKTDVSDPKPTTVSKVLETNSGDSQGKRADME 1474
TP+K+LK K + + F E E +DVS+P+P +SKV + NSGDS+ K +
Sbjct: 1529 TPRKNLKHVEKAGLESNTATEFCEVESRGSSDVSNPEPNAMSKVEDMNSGDSEEKLNERS 1588
Query: 1475 DENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKPAEEVGSVPQDEK 1534
++ LT EESDKE K +SE + VED E + +ES++ +K SE +P E+ + QD +
Sbjct: 1589 EKGLTGGEESDKEEKSVSEGKQVEDKEKRPSDTEESEKEEKPYSEGRPVEDKEGICQDAQ 1648
Query: 1535 ---------SDEEDKEEAESSKGSREEANEDGKSDSEGNEEINGDGSSPMNPEKSQNELP 1585
S+E + EE++ S EEAN++ +SDSE + N + S+P + +KS +
Sbjct: 1649 ESPEKKESYSEEREPEESKRDSPSGEEANKEEQSDSEETQAENLE-SNPTDXDKSSKKTS 1707
Query: 1586 KPVDADDAEISDDEPL 1601
P + +DA+ SDDEPL
Sbjct: 1708 DPSNTEDAKNSDDEPL 1723
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585406|ref|XP_002533398.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223526757|gb|EEF28984.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224139450|ref|XP_002323118.1| predicted protein [Populus trichocarpa] gi|222867748|gb|EEF04879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356522079|ref|XP_003529677.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356564452|ref|XP_003550468.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443672|ref|XP_004139601.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224089565|ref|XP_002308759.1| predicted protein [Populus trichocarpa] gi|222854735|gb|EEE92282.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356557993|ref|XP_003547294.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532370|ref|XP_003534746.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|186530158|ref|NP_001119390.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332008170|gb|AED95553.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1617 | ||||||
| TAIR|locus:2169058 | 1607 | AT5G47690 [Arabidopsis thalian | 0.709 | 0.714 | 0.661 | 0.0 | |
| TAIR|locus:2116787 | 873 | AT4G31880 [Arabidopsis thalian | 0.141 | 0.262 | 0.463 | 1.1e-66 | |
| RGD|1307094 | 1333 | Pds5a "PDS5, regulator of cohe | 0.454 | 0.551 | 0.249 | 1.9e-66 | |
| UNIPROTKB|F1N7G8 | 1449 | PDS5B "Uncharacterized protein | 0.342 | 0.382 | 0.268 | 2.3e-66 | |
| UNIPROTKB|Q5F3U9 | 1412 | PDS5B "Sister chromatid cohesi | 0.342 | 0.392 | 0.270 | 6.6e-66 | |
| UNIPROTKB|Q29RF7 | 1337 | PDS5A "Sister chromatid cohesi | 0.454 | 0.549 | 0.249 | 8.5e-66 | |
| UNIPROTKB|F1P3B8 | 1446 | PDS5B "Sister chromatid cohesi | 0.342 | 0.383 | 0.270 | 1e-65 | |
| ZFIN|ZDB-GENE-091217-2 | 1415 | pds5b "PDS5, regulator of cohe | 0.344 | 0.393 | 0.267 | 2.9e-65 | |
| MGI|MGI:2140945 | 1446 | Pds5b "PDS5, regulator of cohe | 0.342 | 0.383 | 0.267 | 5.3e-65 | |
| UNIPROTKB|E2R7R4 | 1337 | PDS5A "Uncharacterized protein | 0.454 | 0.549 | 0.249 | 7.6e-65 |
| TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3967 (1401.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 764/1155 (66%), Positives = 929/1155 (80%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K E+QLKE+GSKL+ P +KD L+KLLK+AA CLSEL QSPP ++L+++QPFL+A++
Sbjct: 1 MAQKPEEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVI 60
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
+P +L HQDKDVKLLVA+C+ EITRITAPEAPYSD+++KDIFQLIV F+GL D GPSF
Sbjct: 61 KPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSF 120
Query: 121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
GRRV+ILET+AKYRSCVVMLDLECD+LV E+++TF VA DDHPE V SSMQ IMIVLLE
Sbjct: 121 GRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLE 180
Query: 181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
ESED+QE LL+ILLS LGRN++D ARRLAM VIE CA K+E+ IKQFL+SSMSGDSR
Sbjct: 181 ESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDSR 240
Query: 238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
S IDYHEVIYD+YRC+PQ LSGV PYLTGELL D+L+TRLK VGLVG+LF++PG
Sbjct: 241 FSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGLVGELFSLPGRVI 300
Query: 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
+E+F S+F EFLKRLTDR+V VRM++L+H+K CLL+DP RA+A QI++ALCDRLLD+DEN
Sbjct: 301 SEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIISALCDRLLDYDEN 360
Query: 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
+RKQVVAVICDV+ AL SIPV+T+KLVAERLRDK++LVK YTMERL ++FR CLR +
Sbjct: 361 IRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLTELFRVYCLRCAD 420
Query: 418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
G ++ +F WIPGKILRCLYDKDF SDTIE +LC SLFP+ FSV+D+V+HW++IFSGFD+
Sbjct: 421 GKVDTGDFNWIPGKILRCLYDKDFRSDTIEYILCSSLFPSDFSVRDKVKHWIQIFSGFDK 480
Query: 478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+E KA EKILEQ+QR+QQEMQRYLS++Q Q DAPEIQKKILF FRVMSR+F++P K E
Sbjct: 481 VETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILFGFRVMSRAFSDPPKTE 540
Query: 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
+NFLILDQLKDAN+WKIL NLLD NTS QA RDD+LKIL KH LYDFLSTLS+KCS
Sbjct: 541 QNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSEKHSLYDFLSTLSIKCS 600
Query: 598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTXXXXXXXXXXX 657
YLLF+KE+VKEIL EV+ +KSS N +Q CMD LG+LA F P L G
Sbjct: 601 YLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPSLFDGAEEELISFLKDD 660
Query: 658 XXIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
++KEG L +LAKAGGTIRE L +SSVDLLLER+C+EG+R+QAKYAVHALA+ITKDD
Sbjct: 661 DEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRKQAKYAVHALASITKDD 720
Query: 718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRXXXXXXXXXXXXLRCSN 777
GLKSLSVLYKRLVDMLE+K + PAVLQ LGCIAQ AMPV+ETR L+ +
Sbjct: 721 GLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILKLKS 780
Query: 778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
+ +D K WDD+SE+C LKIYGIKTLVKSYLP KDA +R G+DDLLGILK++LS+GE+S
Sbjct: 781 ETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVS 840
Query: 838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
ED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP+++FHLTL+TPEI FP AKK+FL KVH
Sbjct: 841 EDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIPIEIFHLTLKTPEIPFPTAKKIFLGKVH 900
Query: 898 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
QYVKDR+L+ KYAC+FLF IT S E EE+K NLADIIQ +Q K R+IS Q+DANS
Sbjct: 901 QYVKDRVLEMKYACSFLFDITGSNVLESEEDKHNLADIIQHSYQTKVRKISAQTDANSVT 960
Query: 958 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKE 1017
YP +I+PYLVH AHHSCPD+++CKDVK +E++Y +LY I+SML+HK+ED K+E +KE
Sbjct: 961 LYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISMLLHKEEDGKTEDIDKE 1020
Query: 1018 XXX--XXXXXXXXXKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLP 1075
K SED+ DA KSKNSHAIC+LGLSI L++ E + QG + VSLP
Sbjct: 1021 REYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDLQGEITPVSLP 1080
Query: 1076 STLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHE--VVGSEIARHEALDDLE 1133
TLYKP EK EGD S E + WLADE+VL HF +LKLE+H V + + +E + D E
Sbjct: 1081 PTLYKPSEKVEGDKSQVGEEKLWLADETVLLHFRALKLESHADASVIPQTSENEVMIDGE 1140
Query: 1134 KDGNEVPLGKMIQQL 1148
DGNE+PLGK++++L
Sbjct: 1141 SDGNEIPLGKIVERL 1155
|
|
| TAIR|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-091217-2 pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2140945 Pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1617 | |||
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 3e-06 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 5e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 2e-05 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 3e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 8e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 9e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 9e-05 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 2e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 2e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-04 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 5e-04 | |
| PLN02976 | 1713 | PLN02976, PLN02976, amine oxidase | 5e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 6e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 6e-04 | |
| TIGR01651 | 600 | TIGR01651, CobT, cobaltochelatase, CobT subunit | 6e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 0.001 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.003 | |
| PLN02967 | 581 | PLN02967, PLN02967, kinase | 0.003 | |
| COG5406 | 1001 | COG5406, COG5406, Nucleosome binding factor SPN, S | 0.003 |
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 3e-06
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 18/151 (11%)
Query: 1450 PKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDE 1509
P P T SG A+ E+ +E + +E +
Sbjct: 46 PAPPA-----PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSG----SG 96
Query: 1510 SDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEING 1569
S+ V + E + ++ E+ +S E
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE--- 153
Query: 1570 DGSSPMNPEKSQNELPKPVDADDAEISDDEP 1600
+ S N+ P E S +EP
Sbjct: 154 ------SHNPSPNQQPSSFLQPSHEDSPEEP 178
|
Length = 413 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|215527 PLN02976, PLN02976, amine oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|215521 PLN02967, PLN02967, kinase | Back alignment and domain information |
|---|
| >gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1617 | |||
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 100.0 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 99.12 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 98.9 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.63 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.57 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.29 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.2 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.15 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.0 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.99 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.38 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.31 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.28 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.15 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.95 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 96.85 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.82 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 96.79 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.73 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.73 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.61 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 96.61 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 96.59 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.45 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 96.34 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.34 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.33 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.31 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.21 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.88 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.84 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 95.82 | |
| KOG4675 | 273 | consensus Uncharacterized conserved protein, conta | 95.42 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.38 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.35 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 95.17 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 95.03 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.83 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 94.83 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.67 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.67 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 94.6 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 94.57 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 94.51 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.38 | |
| PF09038 | 122 | 53-BP1_Tudor: Tumour suppressor p53-binding protei | 94.31 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.29 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.22 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 94.0 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.68 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.59 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.53 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 93.51 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 93.44 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 93.33 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 91.81 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 91.79 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.45 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.02 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 90.92 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 90.68 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 90.5 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 90.12 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 90.04 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 90.03 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 89.87 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.82 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 89.76 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 89.67 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 89.62 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 89.45 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 88.65 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 88.51 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 88.42 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 88.15 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 87.8 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 87.25 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 87.2 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 87.0 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 86.89 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 85.53 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 85.01 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 84.57 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 84.5 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 84.25 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 83.23 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 82.7 |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-136 Score=1318.56 Aligned_cols=1068 Identities=30% Similarity=0.464 Sum_probs=901.3
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCC
Q 000361 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1617)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1617)
..-|-+....|++++||++||++|+.||++++|++ .+.+++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34466666778999999999999999999999996 6899999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000361 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1617)
Q Consensus 90 daPy~d~~LkdIF~l~v~~f~~L~d~~~p~f~~~~~lLe~la~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~ 169 (1617)
||||++.||+|||++|++||.||.|+.+|||.||+||||+||.||.|++|.|.+|++++.+||++||++++.+||.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555555699999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCcchH
Q 000361 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1617)
Q Consensus 170 ~m~~IL~~vI~Ese~ip~~lLd~IL~~l~~~~~---~~a~~lA~~vi~~~~dkL~~~i~q~f~~~l~~~~-~~~~~~~~~ 245 (1617)
|.+||+.+|.|.+.||.++|++||.+|..++. ..|+.||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 456667799
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000361 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1617)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~sdd~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1617)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000361 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1617)
Q Consensus 326 ~~~~iL~s~p~~~~~~eii~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~V~~elL~~laeR~rDKK~~VR~eAm~~La 405 (1617)
++++||.+||+...+..+..+++.|+.|++++||..+|.++|+++.+.+..++. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999888889999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-hhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000361 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1617)
Q Consensus 406 ~LY~~-~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~-~lvE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 483 (1617)
++|+. ||..++.+...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 555666677888999999999999999998664 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000361 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1617)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~kl--nD~Ri~klLk~~id~ 561 (1617)
..|+++|.++|.+|+.||.+++..+.++ .++++...|..++..||||.......++|++. .+..+...+..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765433 77788889999999999999999999999653 467888899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000361 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 627 (1617)
Q Consensus 562 ~t~~~t~~~a~kELlkkL~~----~~~~~e~l~~Ll~R~S~li~Nk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 627 (1617)
..+|.++.-.+++++.+++. +..+..+.+.|+.|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 88888776556666666554 4557788899999999988877 777777765432111 111 112344
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000361 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1617)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--~~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKy 705 (1617)
...||.++|..+|.+|... +..++..+.+..+...+.+|+.+...|.......+...+.+...+.+++..|+|.|||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 5689999999999988876 46666666666666778899999888854444445566778899999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhccccccc-chHHHHHHHHHhhhcccccc
Q 000361 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKI 779 (1617)
Q Consensus 706 Avr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Iaq~ap~vfe~-~~~eI~~fiik~IL~~~~~~ 779 (1617)
|++|+.++...+.. .+.+++..+.+.+... .++.+.+.+||+|+.+.|..|.+ ....+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876422 3445666666665433 59999999999999999966655 57789999999998888887
Q ss_pred CCC-CCCCCCC---c-hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhhHhHhH
Q 000361 780 RND-TKACWDD---R-SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1617)
Q Consensus 780 ~~~-~~~~W~d---~-se~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEi~~~~~tp~~~ksrLR 851 (1617)
++. ....|+. . +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|+...+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 6677865 2 45688899999999999999866421 111122566777765 68999999889999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHH
Q 000361 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEK 929 (1617)
Q Consensus 852 LaAa~~lLKLAr~--~d~~i~~~~f~l~~~~~qD~~~~VR~~Fl~KL~k~L~~~~L~~kY~~lflla~~a~ep~~~~e~k 929 (1617)
+.|+.++||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+..... ..-+
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~-~~~~ 956 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKEL-LANK 956 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhh-hhHH
Confidence 9999999999976 578899999988888899999999999999999999999999999999988653311100 0001
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccCCchhhhHHHHhhhcCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCccc
Q 000361 930 QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDV 1009 (1617)
Q Consensus 930 ~~l~~~i~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIhlLAHH~~pd~ee~~d~~~~~~~~~~L~F~L~~L~~~~~~~ 1009 (1617)
....+-...+++.+.....+.++.. +...|||+.+|.+|++||| |++....++..|-.+..++||.++.|...+
T Consensus 957 ~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~--- 1030 (1266)
T KOG1525|consen 957 REEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN--- 1030 (1266)
T ss_pred HHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh---
Confidence 1111112222233333333333221 5688999999999999999 999888899999999999999999996431
Q ss_pred cccccccchH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCcccccCCC
Q 000361 1010 KSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE 1083 (1617)
Q Consensus 1010 ~~~~~~~eNi--SlLy~la~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~~~-k~w~lq~yPGkV~LP~~LF~p~~ 1083 (1617)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||++.||..+|.+..
T Consensus 1031 -------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1031 -------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred -------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence 232 2333444556677787643 3456799999999999998775 67999999999999999999876
Q ss_pred CCCCcchhhcccccccccchh
Q 000361 1084 KKEGDDSLASERQTWLADESV 1104 (1617)
Q Consensus 1084 s~~~~ea~~~~~k~yLpde~~ 1104 (1617)
+ ..-...++|+|+++-
T Consensus 1104 ~-----kn~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1104 D-----KNFINNKIYIPEETE 1119 (1266)
T ss_pred h-----hhhccccccCCchhc
Confidence 3 234568999999843
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 1e-17
Identities = 94/638 (14%), Positives = 201/638 (31%), Gaps = 138/638 (21%)
Query: 507 HQDGDAPEIQ---KKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNT 563
H D + E Q K IL F E+ F+ + + + D
Sbjct: 6 HMDFETGEHQYQYKDILSVF-------------EDAFV-----DNFDCKDVQ----DM-- 41
Query: 564 SFDQAFTGR--DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEIL----------L 611
+ D ++ A TL K ++ ++ V+E+L +
Sbjct: 42 -PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPI 98
Query: 612 EVAAQKSSANAQFMQSCMDIL-GILARFSPLLLGGTEEELVNLLKEENEIIKEG---ILH 667
+ ++ S + D L F+ + + + L++ ++ ++
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 668 --------VLAKAGGTIREQ--------------LAATSSSVDLL--LERLCLEGSRRQA 703
+A L +S +L L++L +
Sbjct: 157 GVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 704 KYAVHALAAITKDDGLKS-LSVL-----YKR--LV-DMLEEKTHLPAVLQSLGCIAQTAM 754
+ H+ + +++ L L Y+ LV ++ A +L C +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC--KI-- 268
Query: 755 PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA 814
+ TR ++ +F+ + + + + D + LLK + LP +
Sbjct: 269 -LLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVL 323
Query: 815 HIRPGIDDLLG-ILKSMLS---------YGEMSEDIESS--SVDKAHLR-LASAKAVLRL 861
P ++ ++ L+ +++ IESS ++ A R + +V
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 862 SRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK 921
IP + L S + ++K+H+Y L++ K I
Sbjct: 384 ----SAHIPTILLSLIWFDVIKSDVM---VVVNKLHKY---SLVE-KQPKESTISI---- 428
Query: 922 SPE-FEEEKQNLADIIQMHHQM-KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDI 979
P + E K L + +H + I D++ P Y+ Y HH +I
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH-LKNI 484
Query: 980 DECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE-- 1033
+ + + F +V+ F+ + H + S ++ + I + E
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 1034 --DIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVF 1069
I+D + IC + R++ M ++ +F
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLL-RIALMAEDE-AIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1617 | ||||
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 1e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.003 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 8e-04 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.003 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1617 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.54 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.4 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.4 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.29 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.1 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.86 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.74 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.61 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.58 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.32 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.99 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.49 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.34 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.13 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.67 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.51 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.46 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.21 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.2 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.19 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.16 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 95.67 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 95.44 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 95.0 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 93.3 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 92.5 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 91.92 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 90.68 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 89.16 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 88.78 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 87.75 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 85.33 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 84.72 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 84.19 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2e-09 Score=81.82 Aligned_cols=367 Identities=13% Similarity=0.145 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999864179994314874899999832021205898212798999987887512999999915899999999982
Q 000361 29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGT 108 (1617)
Q Consensus 29 rL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy~d~~LkdIF~l~i~q 108 (1617)
|.-.+.+.+..+.++....+.+....+...|++ +|.-++.+||..+..||..+..-. ...++..+...++..
T Consensus 20 R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~~------~~~~~~~l~~~L~~~ 91 (1207)
T d1u6gc_ 20 RFMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV------KEYQVETIVDTLCTN 91 (1207)
T ss_dssp HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_conf 999999999987230144576889999999999--967998799999999999999767------686699999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16998889987146999999998-432532101698-4289999999999732499825199999999999960234553
Q 000361 109 FSGLKDTGGPSFGRRVVILETLA-KYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQ 186 (1617)
Q Consensus 109 l~~L~d~~~p~f~q~~~lLe~lA-~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~ip 186 (1617)
+. +.+...-.-....|.++- ..-.. ...-. ...++..+...+.+.........+.....+++..++.-....-
T Consensus 92 l~---~~~~~~r~~~~~~L~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l 166 (1207)
T d1u6gc_ 92 ML---SDKEQLRDISSIGLKTVIGELPPA--SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL 166 (1207)
T ss_dssp TT---CSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HC---CCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56---896326599999999999966320--0231127889999999998763477778999999999999998756766
Q ss_pred ----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf ----889999999613798578999999999996554-----47999999998406999998874038899999984163
Q 000361 187 ----EDLLVILLSALGRNKNDTARRLAMNVIEQCAGK-----LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP 257 (1617)
Q Consensus 187 ----~~vLd~IL~~l~~~~~~~a~~lA~~ii~~~~dk-----L~~~i~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P 257 (1617)
..++..++..+.... ..-+.-|...+...+.. +...+...+..+.... .......+-.++-.|.+..|
T Consensus 167 ~~~~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~l~~l~~~~~ 243 (1207)
T d1u6gc_ 167 VNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND--SMSTTRTYIQCIAAISRQAG 243 (1207)
T ss_dssp TTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC--SSCSCTTHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 8779999999998808999-89999999999999987799879999999999870599--88999999999999998761
Q ss_pred HHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHH-----------------------
Q ss_conf 034----41121120123577768999999999986259999821004999999983-----------------------
Q 000361 258 QIL----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK----------------------- 310 (1617)
Q Consensus 258 ~lL----~~ViP~Le~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~----------------------- 310 (1617)
..+ ..++|.+..-+..++.++|..|...+..+...-+..+...++.++...+.
T Consensus 244 ~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~ 323 (1207)
T d1u6gc_ 244 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 323 (1207)
T ss_dssp GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 54677799999999988258617778999999999998674654455999999999987407300034678877655540
Q ss_pred --------------HHCCCCHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf --------------0059993399999999699782199999--867899999866079716799999999999653213
Q 000361 311 --------------RLTDRIVAVRMSVLEHVKSCLLTDPSRA--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL 374 (1617)
Q Consensus 311 --------------R~~Dks~~VR~~~v~~~~~iL~s~p~~~--~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~l 374 (1617)
-..|.+..||...+++...++.+.|... ...++.+.|..++.|.++.||.+++.++..+.....
T Consensus 324 ~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 403 (1207)
T d1u6gc_ 324 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 403 (1207)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 11013566788875220133899999999998689888999999999999999998459854899999999999997303
Q ss_pred CCC----------------------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 788----------------------9888999997603689369999999999999986
Q 000361 375 NSI----------------------PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1617)
Q Consensus 375 ~~V----------------------~~elL~~l~eR~RDKK~~VR~eAi~~L~~LY~~~ 411 (1617)
... -..++..+...++++...+|..++..+..+....
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~ 462 (1207)
T d1u6gc_ 404 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 462 (1207)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 21255515488876302699999876999999999864886567888999999999972
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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