Citrus Sinensis ID: 000378
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1605 | ||||||
| 449502736 | 1615 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.985 | 0.978 | 0.788 | 0.0 | |
| 449460596 | 1615 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.978 | 0.788 | 0.0 | |
| 255562613 | 1594 | nucleotide binding protein, putative [Ri | 0.976 | 0.983 | 0.787 | 0.0 | |
| 358345857 | 1604 | Vascular protein [Medicago truncatula] g | 0.982 | 0.983 | 0.745 | 0.0 | |
| 356511748 | 1595 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.980 | 0.750 | 0.0 | |
| 356563648 | 1595 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.980 | 0.748 | 0.0 | |
| 356496870 | 1583 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.981 | 0.738 | 0.0 | |
| 334185870 | 1614 | transducin/WD40 domain-containing protei | 0.965 | 0.959 | 0.727 | 0.0 | |
| 357518605 | 1644 | Vascular protein [Medicago truncatula] g | 0.980 | 0.957 | 0.712 | 0.0 | |
| 297816310 | 1579 | transducin family protein [Arabidopsis l | 0.954 | 0.970 | 0.717 | 0.0 |
| >gi|449502736|ref|XP_004161728.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226668 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 2612 bits (6770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1293/1639 (78%), Positives = 1421/1639 (86%), Gaps = 58/1639 (3%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+ HLDLRHVGRG KPLQPH AAFH +QAL+AVAIGTYI+E D LTG +I+S+DI
Sbjct: 1 MEWNTIHHLDLRHVGRG-LKPLQPHAAAFHSHQALVAVAIGTYIVECDALTGCKISSLDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+ VVRM+YSPTSGHAV+A+LEDCTIRSCDFD+EQ+ VLHSPEKKME IS DTEVHLALT
Sbjct: 60 GARVVRMSYSPTSGHAVIAMLEDCTIRSCDFDSEQTCVLHSPEKKMEQISSDTEVHLALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACHPRLP+LYVAYADGLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACHPRLPLLYVAYADGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDRRGTLLAWDVSIE+PSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSIEKPSMIG 239
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DG+LQVWKTRVI+NPNRPPMQA FFEPA IESID
Sbjct: 240 ITQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPPMQAXFFEPAVIESID 299
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IPRILSQQGGEAVYPLPR++AL+VHP+LNLA LLFAN +G D +KNRAAYTREGRKQLFA
Sbjct: 300 IPRILSQQGGEAVYPLPRIKALQVHPKLNLAALLFANMSGADTVKNRAAYTREGRKQLFA 359
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 395
VLQSARGSSASVLKEKLSS+G+SGILADHQLQAQLQEHHLKGHS LTISDIARKAFL+SH
Sbjct: 360 VLQSARGSSASVLKEKLSSLGASGILADHQLQAQLQEHHLKGHSSLTISDIARKAFLHSH 419
Query: 396 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 455
FMEGHAK+APISRLP+ITI DSKH LKD+PVCQPFHLELNFF++ENRVLHYPVRAFY+DG
Sbjct: 420 FMEGHAKNAPISRLPIITILDSKHHLKDVPVCQPFHLELNFFSKENRVLHYPVRAFYIDG 479
Query: 456 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 515
NL+AYNLCSG+DSIY+KLY++IPG VE++PK +V+S++Q+LFLV YEFSG TNEVVLY
Sbjct: 480 QNLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIVHSRKQRLFLVTYEFSGATNEVVLYW 539
Query: 516 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKG-VTLQEAADENNG 574
EN D+Q A+SK +TVKGRDAAFIGPNE+QFAILDDDKTGLALYIL G T QE ++N
Sbjct: 540 ENTDSQTANSKCTTVKGRDAAFIGPNENQFAILDDDKTGLALYILPGGKTSQE--NDNEK 597
Query: 575 VVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLS 634
V++ N ST+TN S++GP+ MFE+EVDRIF TP+ESTLMFA GDQIG+AKLVQG+R S
Sbjct: 598 VLEDNHSTETNNNSIRGPMPFMFETEVDRIFPTPLESTLMFASHGDQIGLAKLVQGHRNS 657
Query: 635 ARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASS 694
G+Y+ TK EG+KSIKLKV E++L+V WQET RG VAGVLTTQRVL+VSADLDILAS+
Sbjct: 658 TADGNYVPTKGEGRKSIKLKVNEIVLQVHWQETLRGLVAGVLTTQRVLMVSADLDILAST 717
Query: 695 STKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLL 754
K SLLW+GPAL+FSTATAISVLGWDGKVR ILSISMP AVLVGALNDRLL
Sbjct: 718 YAK---------SLLWIGPALVFSTATAISVLGWDGKVRTILSISMPYAVLVGALNDRLL 768
Query: 755 LANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLR 814
LANPTEINPRQKK +EI+SCLVGLLEPLLIGFATMQQ FEQKLDLSEILYQITSRFDSLR
Sbjct: 769 LANPTEINPRQKKVVEIRSCLVGLLEPLLIGFATMQQRFEQKLDLSEILYQITSRFDSLR 828
Query: 815 ITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 874
ITPRSLDILA GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR
Sbjct: 829 ITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 888
Query: 875 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRL 934
DYP+CPPTS LFHRFRQLGYACIK+GQFDSAKETFEVIAD +SILDLFICHLNPSA+RRL
Sbjct: 889 DYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNDSILDLFICHLNPSALRRL 948
Query: 935 AQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 994
AQ+LEE+G + ELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN
Sbjct: 949 AQKLEEDGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 1008
Query: 995 LKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVE-VTEKSLVKDFIP 1053
LK+IPQWELA EV+PYM+TDDG IPSI++DH+G+YLGS+KGRG+IVE V+E SLVK F P
Sbjct: 1009 LKAIPQWELAAEVMPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEDSLVKSFAP 1068
Query: 1054 AGAD-NKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEE 1112
AG + +K G+ + KS NKSK +SD DSK +LMGLETL Q SSAA DEQAKAEE
Sbjct: 1069 AGGNVDKATGLQTPLAKSISNKSKASSDGDSK-DNLMGLETLMKQ--SSAAADEQAKAEE 1125
Query: 1113 EFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLG 1172
EFKKTMYG A DGSSSDEE SKT+KL IRIRDKP+ S VDV KIKEAT QFKLGEG G
Sbjct: 1126 EFKKTMYGTANDGSSSDEENVSKTRKLHIRIRDKPVTSPTVDVKKIKEATMQFKLGEGFG 1185
Query: 1173 PPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSA-PGDLFGTESWVQPASVSKPA 1230
PP+ RTKSL + DL Q SQP +TAP SA P D FGT+S +QPA V +P+
Sbjct: 1186 PPISRTKSLTGSTPDLAQNLSQPPVTTA---LTAPIVSATPVDPFGTDSLMQPAPVLQPS 1242
Query: 1231 SAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANA 1290
+ G+ G +PIPEDFFQNTIPSLQ+AASLPPPGTYLS+ D S+GV S KV+ NQANA
Sbjct: 1243 TQGTGAGVAARPIPEDFFQNTIPSLQIAASLPPPGTYLSQLDPASRGVDSNKVSSNQANA 1302
Query: 1291 PAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQ-TPFPYQSQ-VLPAQVPPS 1348
P + GLPDGGVPPQ + QPA+P ESIGLPDGGVPPQS GQ T P Q V PAQ
Sbjct: 1303 PEVNVGLPDGGVPPQASQQPALPFESIGLPDGGVPPQSFGQPTAMPPSVQAVQPAQPSFP 1362
Query: 1349 TQPLDLSALGVPNSGDSGKSPANPASPP--TSVRPGQVPRGAAASVCFKTGLAHLEQNQL 1406
+QP+DLS LGVPNS DSGK P PP TSVRPGQVPRGAAAS+CFKTGLAHLEQN L
Sbjct: 1363 SQPIDLSVLGVPNSADSGKPP-----PPQATSVRPGQVPRGAAASICFKTGLAHLEQNHL 1417
Query: 1407 PDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAK 1466
DALSCFDEAFLALAKDHSRGAD+KAQATICAQYKIAVTLLQEI RLQKVQG S+A+SAK
Sbjct: 1418 SDALSCFDEAFLALAKDHSRGADIKAQATICAQYKIAVTLLQEIGRLQKVQG-SSALSAK 1476
Query: 1467 DEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELR 1526
DEM RLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELL SKAPASKQDELR
Sbjct: 1477 DEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLFSKAPASKQDELR 1536
Query: 1527 SLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICG 1586
SLIDMCVQRGL NKSIDP EDPS FCAATLSRLSTIGYDVCDLCGAKFSAL++PGCIICG
Sbjct: 1537 SLIDMCVQRGLLNKSIDPQEDPSMFCAATLSRLSTIGYDVCDLCGAKFSALTSPGCIICG 1596
Query: 1587 MGSIKRSDALAGPVPTPFG 1605
MGSIKRSDALA PVP+PFG
Sbjct: 1597 MGSIKRSDALAEPVPSPFG 1615
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460596|ref|XP_004148031.1| PREDICTED: uncharacterized protein LOC101204486 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2610 bits (6765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1292/1639 (78%), Positives = 1421/1639 (86%), Gaps = 58/1639 (3%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+ HLDLRHVGRG KPLQPH AAFH +QAL+AVAIGTYI+E D LTG +I+S+DI
Sbjct: 1 MEWNTIHHLDLRHVGRG-LKPLQPHAAAFHSHQALVAVAIGTYIVECDALTGCKISSLDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+ VVRM+YSPTSGHAV+A+LEDCTIRSCDFD+EQ+ VLHSPEKKME IS DTEVHLALT
Sbjct: 60 GARVVRMSYSPTSGHAVIAMLEDCTIRSCDFDSEQTCVLHSPEKKMEQISSDTEVHLALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACHPRLP+LYVAYADGLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACHPRLPLLYVAYADGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDRRGTLLAWDVSIE+PSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSIEKPSMIG 239
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DG+LQVWKTRVI+NPNRPPMQANFFEPA IESID
Sbjct: 240 ITQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPPMQANFFEPAVIESID 299
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IPRILSQQGGEAVYPLPR++AL+VHP+LNLA LLFAN +G D +KNRAAYTREGRKQLFA
Sbjct: 300 IPRILSQQGGEAVYPLPRIKALQVHPKLNLAALLFANMSGADTVKNRAAYTREGRKQLFA 359
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 395
VLQSARGSSASVLKEKLSS+ +SGILADH+LQAQLQEHHLKGHS LTISDIARKAFL+SH
Sbjct: 360 VLQSARGSSASVLKEKLSSLCASGILADHELQAQLQEHHLKGHSSLTISDIARKAFLHSH 419
Query: 396 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 455
FMEGHAK+APISRLP+ITI DSKH LKD+PVCQPFHLELNFF++ENRVLHYPVRAFY+DG
Sbjct: 420 FMEGHAKNAPISRLPIITILDSKHHLKDVPVCQPFHLELNFFSKENRVLHYPVRAFYIDG 479
Query: 456 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 515
NL+AYNLCSG+DSIY+KLY++IPG VE++PK +V+S++Q+LFLV YEFSG TNEVVLY
Sbjct: 480 QNLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIVHSRKQRLFLVTYEFSGATNEVVLYW 539
Query: 516 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKG-VTLQEAADENNG 574
EN D+Q A+SK +TVKGRDAAFIGPNE+QFAILDDDKTGLALYIL G T QE ++N
Sbjct: 540 ENTDSQTANSKCTTVKGRDAAFIGPNENQFAILDDDKTGLALYILPGGKTSQE--NDNEK 597
Query: 575 VVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLS 634
V++ N ST+TN S++GP+ MFE+EVDRIF TP+ESTLMFA GDQIG+AKLVQG+R S
Sbjct: 598 VLEDNHSTETNNNSIRGPMPFMFETEVDRIFPTPLESTLMFASHGDQIGLAKLVQGHRNS 657
Query: 635 ARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASS 694
G+Y+ TK EG+KSIKLKV E++L+V WQET RG VAGVLTTQRVL+VSADLDILAS+
Sbjct: 658 TADGNYVPTKGEGRKSIKLKVNEIVLQVHWQETLRGLVAGVLTTQRVLMVSADLDILAST 717
Query: 695 STKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLL 754
K SLLW+GPAL+FSTATAISVLGWDGKVR ILSISMP AVLVGALNDRLL
Sbjct: 718 YAK---------SLLWIGPALVFSTATAISVLGWDGKVRTILSISMPYAVLVGALNDRLL 768
Query: 755 LANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLR 814
LANPTEINPRQKK +EI+SCLVGLLEPLLIGFATMQQ FEQKLDLSEILYQITSRFDSLR
Sbjct: 769 LANPTEINPRQKKVVEIRSCLVGLLEPLLIGFATMQQRFEQKLDLSEILYQITSRFDSLR 828
Query: 815 ITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 874
ITPRSLDILA GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR
Sbjct: 829 ITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 888
Query: 875 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRL 934
DYP+CPPTS LFHRFRQLGYACIK+GQFDSAKETFEVIAD +SILDLFICHLNPSA+RRL
Sbjct: 889 DYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNDSILDLFICHLNPSALRRL 948
Query: 935 AQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 994
AQ+LEE+G + ELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN
Sbjct: 949 AQKLEEDGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 1008
Query: 995 LKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVE-VTEKSLVKDFIP 1053
LK+IPQWELA EV+PYM+TDDG IPSI++DH+G+YLGS+KGRG+IVE V+E SLVK F P
Sbjct: 1009 LKAIPQWELAAEVMPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEDSLVKSFAP 1068
Query: 1054 AGAD-NKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEE 1112
AG + +K G+ + KS NKSK +SD DSK +LMGLETL Q SSAA DEQAKAEE
Sbjct: 1069 AGGNVDKATGLQTPLAKSISNKSKASSDGDSK-DNLMGLETLMKQ--SSAAADEQAKAEE 1125
Query: 1113 EFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLG 1172
EFKKTMYG A DGSSSDEE SKT+KL IRIRDKP+ S VDV KIKEAT QFKLGEG G
Sbjct: 1126 EFKKTMYGTANDGSSSDEENVSKTRKLHIRIRDKPVTSPTVDVKKIKEATMQFKLGEGFG 1185
Query: 1173 PPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSA-PGDLFGTESWVQPASVSKPA 1230
PP+ RTKSL + DL Q SQP A +TAP SA P D FGT+S +QPA V + +
Sbjct: 1186 PPISRTKSLTGSTPDLAQNLSQPPATTA---LTAPIVSATPVDPFGTDSLMQPAPVLQTS 1242
Query: 1231 SAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANA 1290
+ G+ G +PIPEDFFQNTIPSLQ+AASLPPPGTYLS+ D S+GV S KV+ NQANA
Sbjct: 1243 TQGTGAGVAARPIPEDFFQNTIPSLQIAASLPPPGTYLSQLDPASRGVDSNKVSSNQANA 1302
Query: 1291 PAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQ-TPFPYQSQ-VLPAQVPPS 1348
P + GLPDGGVPPQ + QPA+P ESIGLPDGGVPPQS GQ T P Q V PAQ
Sbjct: 1303 PEVNVGLPDGGVPPQASQQPALPFESIGLPDGGVPPQSLGQPTAMPPSVQAVQPAQPSFP 1362
Query: 1349 TQPLDLSALGVPNSGDSGKSPANPASPP--TSVRPGQVPRGAAASVCFKTGLAHLEQNQL 1406
+QP+DLS LGVPNS DSGK P PP TSVRPGQVPRGAAAS+CFKTGLAHLEQN L
Sbjct: 1363 SQPIDLSVLGVPNSADSGKPP-----PPQATSVRPGQVPRGAAASICFKTGLAHLEQNHL 1417
Query: 1407 PDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAK 1466
DALSCFDEAFLALAKDHSRGAD+KAQATICAQYKIAVTLLQEI RLQKVQG S+A+SAK
Sbjct: 1418 SDALSCFDEAFLALAKDHSRGADIKAQATICAQYKIAVTLLQEIGRLQKVQG-SSALSAK 1476
Query: 1467 DEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELR 1526
DEM RLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELL SKAPASKQDELR
Sbjct: 1477 DEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLFSKAPASKQDELR 1536
Query: 1527 SLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICG 1586
SLIDMCVQRGL NKSIDP EDPS FCAATLSRLSTIGYDVCDLCGAKFSAL++PGCIICG
Sbjct: 1537 SLIDMCVQRGLLNKSIDPQEDPSMFCAATLSRLSTIGYDVCDLCGAKFSALTSPGCIICG 1596
Query: 1587 MGSIKRSDALAGPVPTPFG 1605
MGSIKRSDALA PVP+PFG
Sbjct: 1597 MGSIKRSDALAEPVPSPFG 1615
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562613|ref|XP_002522312.1| nucleotide binding protein, putative [Ricinus communis] gi|223538390|gb|EEF39996.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2589 bits (6711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1284/1631 (78%), Positives = 1402/1631 (85%), Gaps = 63/1631 (3%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEWATVQHLDLRHVGRG +KPLQPH AAFHP QALIA AIGTYIIEFD LTGS+++SIDI
Sbjct: 1 MEWATVQHLDLRHVGRGVYKPLQPHAAAFHPTQALIAAAIGTYIIEFDALTGSKLSSIDI 60
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRMAYSPTSGH+VVAILEDCTIRSCDFDTEQ+ VLHSPEK+ME IS DTEVHLALT
Sbjct: 61 GAPAVRMAYSPTSGHSVVAILEDCTIRSCDFDTEQTCVLHSPEKRMEQISSDTEVHLALT 120
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI
Sbjct: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAV YTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR GTLLAWDVS ERP+MIG
Sbjct: 181 RAYNIHTYAVAYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRHGTLLAWDVSTERPNMIG 240
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DG+LQVWKTRVI+NPNRPPMQANFFE A IESID
Sbjct: 241 ITQVGSQPITSIAWLPTLRLLVTVSKDGTLQVWKTRVILNPNRPPMQANFFESAGIESID 300
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IPRILSQ GGE N TGGDN+KNRAAYTREGRKQLFA
Sbjct: 301 IPRILSQ-GGET------------------------NVTGGDNLKNRAAYTREGRKQLFA 335
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGH-SHLTISDIARKAFLYS 394
VLQSARGSSAS+LKEKLSS+GSSGILADHQLQAQLQEHHLKG+ S LTISDIARKAFLYS
Sbjct: 336 VLQSARGSSASILKEKLSSLGSSGILADHQLQAQLQEHHLKGNQSQLTISDIARKAFLYS 395
Query: 395 HFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVD 454
HAKSAPISRLPL++I D+KH LKDIP C P HLELNFFN+ENRVLHYPVRAFY+D
Sbjct: 396 ---VCHAKSAPISRLPLVSILDTKHHLKDIPACLPLHLELNFFNKENRVLHYPVRAFYID 452
Query: 455 GINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLY 514
G+NL+ YNLCSG D+IY+KLY+++PG VE++PKH+VYS++Q LFLV+YEFSG+TNEVVLY
Sbjct: 453 GVNLMGYNLCSGVDNIYKKLYTSVPGNVEFHPKHIVYSRKQHLFLVIYEFSGSTNEVVLY 512
Query: 515 RENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNG 574
EN ++Q A+SK +TVKGRDAAFIGP+E+QFA LD+DKTGLALYIL G +AA E N
Sbjct: 513 WENTESQPANSKGNTVKGRDAAFIGPSENQFAFLDEDKTGLALYILPG-GASKAAGEKNL 571
Query: 575 VVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLS 634
+V+ NQS +TN S++GP+Q MFESEVDRIFSTP+ESTLMFA G QIG+AKL+QGYRL
Sbjct: 572 LVEENQSVETNANSLRGPMQFMFESEVDRIFSTPLESTLMFAIHGSQIGLAKLLQGYRLP 631
Query: 635 ARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASS 694
GHY+ TK+EGKKSIKLK E++L+V WQET RGYVAG+LTTQRVL+VSADLDILASS
Sbjct: 632 TSDGHYIPTKTEGKKSIKLKKNEIVLQVHWQETARGYVAGILTTQRVLMVSADLDILASS 691
Query: 695 STKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLL 754
STKFDKG PSFRSLLWVGPALLFSTATA+ VLGWDG VR I+SISMP AVL+GALNDRLL
Sbjct: 692 STKFDKGRPSFRSLLWVGPALLFSTATAVRVLGWDGIVRTIVSISMPYAVLIGALNDRLL 751
Query: 755 LANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLR 814
ANPTEINPRQKKG+EI+SCLVGLLEPLLIGFATMQQ FEQKLDLSE+LYQITSRFDSLR
Sbjct: 752 FANPTEINPRQKKGVEIRSCLVGLLEPLLIGFATMQQTFEQKLDLSEVLYQITSRFDSLR 811
Query: 815 ITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 874
ITPRSLDILA+GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF+TALSVLKDEFLRSR
Sbjct: 812 ITPRSLDILARGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFATALSVLKDEFLRSR 871
Query: 875 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRL 934
DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYES+LDLFICHLNPSAMRRL
Sbjct: 872 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESMLDLFICHLNPSAMRRL 931
Query: 935 AQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 994
AQ+LE+EGA+PELRRYCERILRVRS+GWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN
Sbjct: 932 AQKLEDEGADPELRRYCERILRVRSSGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 991
Query: 995 LKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPA 1054
LKSIPQWELA EV+PYM+TDDG +P+II+DH+G+YLGSIKGRG +VEV E SLVK F A
Sbjct: 992 LKSIPQWELAAEVMPYMKTDDGTVPAIITDHIGVYLGSIKGRGNVVEVREGSLVKAFKSA 1051
Query: 1055 GADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEF 1114
D+KPNG+ + KS+ N+SKG + +SK SLMGLETL QN SS+A DEQAKA+EEF
Sbjct: 1052 -VDDKPNGLPNPLAKSSSNESKGLHEGNSKGDSLMGLETLIKQNASSSAADEQAKAQEEF 1110
Query: 1115 KKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGPP 1174
KKTMYGAA SSSDEE SK +KLQIRIRDKP+ S+ VDVNKIKEATK FKLGEGLGPP
Sbjct: 1111 KKTMYGAATS-SSSDEEEPSKARKLQIRIRDKPVTSATVDVNKIKEATKTFKLGEGLGPP 1169
Query: 1175 MRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGS 1234
MRTKSL GSQDL Q+ SQP A + + +SSA DLFGT+S+ Q A VS+P
Sbjct: 1170 MRTKSLT-GSQDLSQMLSQPPAMSANAPTASTSSSAAVDLFGTDSFTQLAPVSQPGPTVM 1228
Query: 1235 SVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAAD 1294
VG +PIPEDFFQNTIPSLQVAASLPPPGT L+K DQ S+ G+ PN A AA
Sbjct: 1229 GVGVAARPIPEDFFQNTIPSLQVAASLPPPGTLLAKLDQTSR---QGQTVPNPVGASAAA 1285
Query: 1295 SGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDL 1354
GLPDGGVPPQ Q A+ +ESIGLPDGGVPPQ+S Q +P S+QPLDL
Sbjct: 1286 IGLPDGGVPPQTT-QQAVSLESIGLPDGGVPPQASSPGAVLPQPHAQAPPIPVSSQPLDL 1344
Query: 1355 SALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFD 1414
S LGVPNS DSGK P ASPP+SVRPGQVPRGAAASVCFK GLAHLEQNQLPDALSCFD
Sbjct: 1345 SILGVPNSVDSGKPPVKDASPPSSVRPGQVPRGAAASVCFKVGLAHLEQNQLPDALSCFD 1404
Query: 1415 EAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSR 1474
EAFLALAKD+SRGAD+KAQATICAQYKIAVTLLQEI RLQKVQGPS A+SAKDEMARLSR
Sbjct: 1405 EAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEISRLQKVQGPS-ALSAKDEMARLSR 1463
Query: 1475 HLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQ 1534
HLGSLPL KHRINCIRTAIKRNMEVQN+AY+KQMLELLLSKAP SKQDELRSL+DMCVQ
Sbjct: 1464 HLGSLPLLAKHRINCIRTAIKRNMEVQNFAYSKQMLELLLSKAPPSKQDELRSLVDMCVQ 1523
Query: 1535 RGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSD 1594
RG SNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALS PGCIICGMGSIKRSD
Sbjct: 1524 RGSSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSTPGCIICGMGSIKRSD 1583
Query: 1595 ALAGPVPTPFG 1605
ALAGPVP+PFG
Sbjct: 1584 ALAGPVPSPFG 1594
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345857|ref|XP_003636991.1| Vascular protein [Medicago truncatula] gi|355502926|gb|AES84129.1| Vascular protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2478 bits (6422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1217/1632 (74%), Positives = 1378/1632 (84%), Gaps = 55/1632 (3%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW+T+QHLDLRH+GRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWSTLQHLDLRHIGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRM+YSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E IS DTEVH+ALT
Sbjct: 60 GAPAVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKSEQISSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIK DLKK IVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKPDLKKAIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR+GTLLAWDVS ERPSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRQGTLLAWDVSTERPSMIG 239
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DG+LQVW+TRV +NPNRP QA+FFEPA+IESID
Sbjct: 240 IKQVGSQPIKSVAFLPTLRLLVTLSKDGNLQVWETRVTVNPNRPSTQASFFEPAAIESID 299
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IPRILSQQGGEAVYPLPR++A+E HP+ NLA L N T + KN+A+Y+REGRKQLFA
Sbjct: 300 IPRILSQQGGEAVYPLPRIKAIEFHPKSNLAAL---NVTSAETSKNKASYSREGRKQLFA 356
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 395
VLQSARGSSASV+KEKLS++GSSG+LADHQLQAQLQEHHLKGHS++TISDIARKAFLYSH
Sbjct: 357 VLQSARGSSASVIKEKLSALGSSGVLADHQLQAQLQEHHLKGHSNITISDIARKAFLYSH 416
Query: 396 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 455
FMEGH K +PISRLPLIT+ D+KH LKD PVC+P+HLELNFFN+ NRVLHYP RAFY+DG
Sbjct: 417 FMEGHMKISPISRLPLITVLDTKHHLKDFPVCEPYHLELNFFNKANRVLHYPSRAFYMDG 476
Query: 456 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 515
+NL+A++L SG+D IYRKLY++IPG VEY K++++SK+Q+LFLVVYEFSG+TNEVVLY
Sbjct: 477 LNLMAHSLSSGSDIIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVVYEFSGSTNEVVLYW 536
Query: 516 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 575
EN D Q +SKSSTVKGRDAAFIG NE+QFAILD+D+TGLALY L G T QE D N+ V
Sbjct: 537 ENTDVQTGNSKSSTVKGRDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKD-NDKV 595
Query: 576 VDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSA 635
+ NQ T+TNVGS++GP MFE+EVDRIFSTP++STLMFA G+QIG+ KL++GYRLS
Sbjct: 596 FEENQPTETNVGSIRGPTPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLST 655
Query: 636 RA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILAS 693
GHY+ TKS+GKKSIKLK E++L+V WQET RG VAG+LTT RVLIVSA LD+LA
Sbjct: 656 STANGHYISTKSDGKKSIKLKRNEIVLQVHWQETLRGNVAGILTTHRVLIVSAALDVLAG 715
Query: 694 SSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRL 753
+STK SLLWVGPALLFST A+S+LGWDGKVR +LSISMP AVLVGALNDRL
Sbjct: 716 TSTK---------SLLWVGPALLFSTTAAVSILGWDGKVRPVLSISMPYAVLVGALNDRL 766
Query: 754 LLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSL 813
LLA+PTEINPRQKKG+EIKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFDSL
Sbjct: 767 LLASPTEINPRQKKGVEIKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFDSL 826
Query: 814 RITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRS 873
RITPRSLDILAKG PVCGDLAVSLSQ+GPQFTQV+RG+YA+KALRFSTALSVLKDEFLRS
Sbjct: 827 RITPRSLDILAKGSPVCGDLAVSLSQSGPQFTQVMRGVYAVKALRFSTALSVLKDEFLRS 886
Query: 874 RDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRR 933
RDYP+CPPTS LFHRFRQL YACI++GQFDSAKETFE IADYE +LDLFICHLNPSAMRR
Sbjct: 887 RDYPRCPPTSHLFHRFRQLAYACIRFGQFDSAKETFETIADYEGMLDLFICHLNPSAMRR 946
Query: 934 LAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT 993
LAQ+LE+EG + ELRRYCERILR+RSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT
Sbjct: 947 LAQKLEDEGLDSELRRYCERILRIRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT 1006
Query: 994 NLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIP 1053
+K IPQWELA EV PYM+TDDG +PSII DH+G+YLGSIKGRG IVEV E SLVK F+P
Sbjct: 1007 TVKDIPQWELAAEVTPYMKTDDGTVPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKAFMP 1066
Query: 1054 AGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEE 1113
AG DNK NG+ SSVKS N+ + K S MGLE+L Q +S+A DEQAKAEEE
Sbjct: 1067 AGNDNKVNGLELSSVKSISNQPNVVG--NPKGDSSMGLESLNKQLANSSA-DEQAKAEEE 1123
Query: 1114 FKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGP 1173
FKK+MYG AADGSSSDEEG SK K++ I+IRDKPI+SS VDVNKIKEATKQFKLGEGL P
Sbjct: 1124 FKKSMYG-AADGSSSDEEGASKIKRIHIKIRDKPISSSTVDVNKIKEATKQFKLGEGLPP 1182
Query: 1174 PMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAG 1233
PMRT+S GSQDLGQ+ S P A G I S P DLFGT++ QP +S+P +
Sbjct: 1183 PMRTRS-NSGSQDLGQILSLPPATTG---IPTATVSTPVDLFGTDASTQPEMISQPTTGA 1238
Query: 1234 SSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAA 1293
G PIPEDFFQNTI S+ VAASLPP GT+LSK+ + G+ + PNQA+A A
Sbjct: 1239 VGGGVAIGPIPEDFFQNTISSVHVAASLPPAGTFLSKF---TPGIQTSNTTPNQASATEA 1295
Query: 1294 DSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLD 1353
GL GGV Q QP +P+ESIGLPDGGVPPQS Q Q Q+ PAQ S+QPLD
Sbjct: 1296 GFGL-QGGVSNQAIQQPVVPMESIGLPDGGVPPQSMPQAVVTPQPQLQPAQPQISSQPLD 1354
Query: 1354 LSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCF 1413
LS LGVPNS DSGK P + S P SV PGQVPRGA ASVCFKTGLAHLE N L DALSCF
Sbjct: 1355 LSVLGVPNSADSGKLPQS-GSAPVSVHPGQVPRGAPASVCFKTGLAHLELNHLSDALSCF 1413
Query: 1414 DEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLS 1473
DE+FLALAK+ SRG+D+KAQATICAQYKIAVTLL+EI RLQ+V GPS AISAKDEMARLS
Sbjct: 1414 DESFLALAKEQSRGSDIKAQATICAQYKIAVTLLREIGRLQRVHGPS-AISAKDEMARLS 1472
Query: 1474 RHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCV 1533
RHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELLLSKAP++KQ+E RSL+D+CV
Sbjct: 1473 RHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPSNKQEEFRSLVDLCV 1532
Query: 1534 QRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRS 1593
QRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++APGCI+CGMGSIKRS
Sbjct: 1533 QRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIKRS 1592
Query: 1594 DALAGPVPTPFG 1605
DA+A VP+PFG
Sbjct: 1593 DAIAASVPSPFG 1604
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511748|ref|XP_003524585.1| PREDICTED: uncharacterized protein LOC100805443 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2475 bits (6415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1228/1636 (75%), Positives = 1375/1636 (84%), Gaps = 72/1636 (4%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+QHLDLRHVGRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWTTLQHLDLRHVGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRM+YSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E IS DTEVH+ALT
Sbjct: 60 GAPAVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKTEQISSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW+FVGDR+GTLL WDVS ERP M+G
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWIFVGDRQGTLLVWDVSTERPIMVG 239
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DG+L VW+TRV +NPN PP QANFFEPA+IESID
Sbjct: 240 IKQVGSQPITSVAWLPMLRLLVTLSKDGNLHVWETRVTVNPNGPPTQANFFEPAAIESID 299
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IPRILSQQGGEA N T DN KN+A Y+REGRKQLFA
Sbjct: 300 IPRILSQQGGEA------------------------NATIADNSKNKARYSREGRKQLFA 335
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 395
VLQSARGSSASVLKEKLS++GSSG+LADHQLQAQLQEHHLKGH HLTISDIARKAFLYS
Sbjct: 336 VLQSARGSSASVLKEKLSALGSSGVLADHQLQAQLQEHHLKGHGHLTISDIARKAFLYS- 394
Query: 396 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 455
HAK +PISRLPLIT+ D+KH LKD PVC+PFHLELNFFN+ NRVLHYPVRA+Y+DG
Sbjct: 395 --VCHAKISPISRLPLITVLDNKHHLKDFPVCEPFHLELNFFNKANRVLHYPVRAYYMDG 452
Query: 456 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 515
+NL+A+NL SG+DSIYRKLY++IPG VEY K++++SK+Q LFLVVYEFSG TNEVVLY
Sbjct: 453 LNLMAHNLSSGSDSIYRKLYNSIPGNVEYRAKYLIHSKKQCLFLVVYEFSGATNEVVLYW 512
Query: 516 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 575
EN D Q+A+SKSSTVKGRDAAFIGPNE+QFAILDDDKTGL +Y L G QEA D N+ V
Sbjct: 513 ENSDAQVANSKSSTVKGRDAAFIGPNENQFAILDDDKTGLGVYTLPGGASQEAKD-NDKV 571
Query: 576 VDHN--QSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRL 633
+ N + +T+VGS++GP+ MFE+EVDRIFSTP++S+LMFA G+QIG+ K +QGYRL
Sbjct: 572 FEENPTATAETSVGSIRGPMPFMFETEVDRIFSTPLDSSLMFASHGNQIGIVKFIQGYRL 631
Query: 634 SARA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDIL 691
S GHY+ T SEGKKSIKLK E++L+V WQET RG+VAG+LTTQRVLIVSA LDIL
Sbjct: 632 STSTANGHYISTNSEGKKSIKLKRNEIVLQVHWQETLRGHVAGILTTQRVLIVSAALDIL 691
Query: 692 ASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALND 751
A +S FDKGLPSFRSLLWVGPALLFSTATAIS+LGWDGKVR+ILSISMP AVLVG+LND
Sbjct: 692 AGTSANFDKGLPSFRSLLWVGPALLFSTATAISILGWDGKVRSILSISMPYAVLVGSLND 751
Query: 752 RLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD 811
RLLLANPTEINPRQKK +EIKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFD
Sbjct: 752 RLLLANPTEINPRQKKRVEIKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFD 811
Query: 812 SLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL 871
S+RITPRSLDILA+G PVCGDLAV+LSQ+GPQFTQV+RG+YA+KAL FSTAL++LKDEFL
Sbjct: 812 SMRITPRSLDILARGSPVCGDLAVALSQSGPQFTQVMRGVYAVKALHFSTALNILKDEFL 871
Query: 872 RSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAM 931
RSRDYPKCPPTS LFHRFRQLGYACI++GQFDSAKETFEVIAD ES+LDLFICHLNPSAM
Sbjct: 872 RSRDYPKCPPTSHLFHRFRQLGYACIRFGQFDSAKETFEVIADNESMLDLFICHLNPSAM 931
Query: 932 RRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 991
RRLAQ+LEEEG + ELRRYC+RILR RSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT
Sbjct: 932 RRLAQKLEEEGLDSELRRYCDRILRARSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 991
Query: 992 PTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDF 1051
PT +K IPQWELA EV PYM+TDDG IPSII DH+G+YLGSIKGRG IVEV E SLVK F
Sbjct: 992 PTAVKDIPQWELAAEVTPYMKTDDGTIPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKAF 1051
Query: 1052 IPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAE 1111
+P G +NK NG+ +SSVKS N+S ++K SLMGLE+L Q+ +S++ DEQAKAE
Sbjct: 1052 MPTGNENKVNGLEASSVKSISNQSNVVG--NTKGDSLMGLESLN-QHLASSSADEQAKAE 1108
Query: 1112 EEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGL 1171
EEFKK+MYGAAADGSSSDEEG SK KKL+I+IRDKPIASS VDVNKIKEAT+QFKLGEGL
Sbjct: 1109 EEFKKSMYGAAADGSSSDEEGVSKIKKLRIKIRDKPIASSTVDVNKIKEATRQFKLGEGL 1168
Query: 1172 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1231
PPMR++S GSQDLGQ+ S P G + T S PGDLFGT++ Q +S+P +
Sbjct: 1169 APPMRSRSSSGGSQDLGQILSLPPPTTGSASSTV---STPGDLFGTDALTQSEPISQPTT 1225
Query: 1232 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAP 1291
G + PIPEDFFQNTIPSLQVA SLPP GT+LSKY + GV K PNQ +A
Sbjct: 1226 GAVGGGLKAGPIPEDFFQNTIPSLQVAQSLPPAGTFLSKY---TPGVEISKTTPNQVSAS 1282
Query: 1292 AADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1351
A+ GL GGV PQ QPA+P+ESIGLPDGGVPPQSS Q QSQ+ +Q S+QP
Sbjct: 1283 EANVGL-QGGVSPQTIQQPAVPIESIGLPDGGVPPQSSAQAVVMPQSQLQASQAQISSQP 1341
Query: 1352 LDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALS 1411
LDLS LGVPNS DSGK P S +V PGQVPRGAAASVCFKTGLAHLEQN L DALS
Sbjct: 1342 LDLSILGVPNSADSGKPPQT-GSQQIAVHPGQVPRGAAASVCFKTGLAHLEQNNLSDALS 1400
Query: 1412 CFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMAR 1471
CFDEAFLALAK+ SRG D+KAQATICAQYKIAVTLL+EI RLQKV GPS AISAKDEMAR
Sbjct: 1401 CFDEAFLALAKEQSRGIDIKAQATICAQYKIAVTLLREIGRLQKVHGPS-AISAKDEMAR 1459
Query: 1472 LSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDM 1531
LSRHLGSLPL KHRINCIRTAIKRNM+VQNYAY+KQMLELLLSKAP SKQDE RSLID+
Sbjct: 1460 LSRHLGSLPLLAKHRINCIRTAIKRNMDVQNYAYSKQMLELLLSKAPPSKQDEFRSLIDL 1519
Query: 1532 CVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIK 1591
CVQRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++ PGCI+CGMGSIK
Sbjct: 1520 CVQRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTVPGCIVCGMGSIK 1579
Query: 1592 RSDAL--AGPVPTPFG 1605
RSDAL AGPVP+PFG
Sbjct: 1580 RSDALAGAGPVPSPFG 1595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563648|ref|XP_003550073.1| PREDICTED: uncharacterized protein LOC100804284 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2453 bits (6357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1224/1636 (74%), Positives = 1367/1636 (83%), Gaps = 72/1636 (4%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+QHLDLRHVGRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWTTLQHLDLRHVGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRM+YSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E I DTEVH+ALT
Sbjct: 60 GAPAVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKTEQIFSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW+FVGDRRGTLL WDVS ERPSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWIFVGDRRGTLLVWDVSTERPSMIG 239
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DG+L VW+TRV +NPN PP QANFFEPA+IESID
Sbjct: 240 IKQVGSQPITSVAWLPMLRLLITLSKDGNLHVWETRVTVNPNGPPTQANFFEPAAIESID 299
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IPRILSQQGGEA N T DN KN+A Y+ +GRKQLFA
Sbjct: 300 IPRILSQQGGEA------------------------NATIADNSKNKARYSTDGRKQLFA 335
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 395
VLQSARGSSASVLKEKLS++GSSG+LADHQLQAQLQEHHLKGH HLTISDIARKAFLYS
Sbjct: 336 VLQSARGSSASVLKEKLSALGSSGVLADHQLQAQLQEHHLKGHGHLTISDIARKAFLYS- 394
Query: 396 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 455
HAK +PISRLPLIT+ D+KH LKD PVCQPFHLELNFFN+ NRVLHYPVRA+Y+DG
Sbjct: 395 --VCHAKISPISRLPLITVLDNKHHLKDFPVCQPFHLELNFFNKANRVLHYPVRAYYMDG 452
Query: 456 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 515
+NL+A+NL SG+DSIYRKLY++IPG VEY K++++SK+Q+LFLVVYEFSG TNEVVLY
Sbjct: 453 LNLMAHNLSSGSDSIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVVYEFSGATNEVVLYW 512
Query: 516 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 575
EN D Q+A+SKSSTVKGRDAAFIGPNE+QFAILDDDKTGL +Y L G QEA D N+ V
Sbjct: 513 ENSDAQVANSKSSTVKGRDAAFIGPNENQFAILDDDKTGLGVYTLPGGASQEAKD-NDKV 571
Query: 576 VDHN--QSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRL 633
+ N + +T+ GS++GP MFE+EVDRIFSTP++S+LMFA G+QIG+AKL+QGYRL
Sbjct: 572 FEENPTATAETSAGSIRGPTPFMFETEVDRIFSTPLDSSLMFASHGNQIGIAKLIQGYRL 631
Query: 634 SARA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDIL 691
S GHY+ T SEGKKSIKLK E++L+V WQET RG+VAG+LTTQRVLIVSA LDIL
Sbjct: 632 STSTANGHYISTNSEGKKSIKLKRNEIVLQVHWQETLRGHVAGILTTQRVLIVSAALDIL 691
Query: 692 ASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALND 751
A + FDKGLPSFRSLLWVGPALLFSTA AIS+LGWDGKVR+ILSISMP AVLVG+LND
Sbjct: 692 AGTYANFDKGLPSFRSLLWVGPALLFSTAAAISILGWDGKVRSILSISMPYAVLVGSLND 751
Query: 752 RLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD 811
RLLLANPTEINPRQKK +EIKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFD
Sbjct: 752 RLLLANPTEINPRQKKRVEIKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFD 811
Query: 812 SLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL 871
SLRITPRSLDILA+G PVCGDLAV+LSQ+GPQFTQV+RG+YA+KALRFSTAL++LKDEFL
Sbjct: 812 SLRITPRSLDILARGSPVCGDLAVALSQSGPQFTQVMRGVYAVKALRFSTALNILKDEFL 871
Query: 872 RSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAM 931
RSRDYPKCPPTS LFHRFRQLGYACI++GQFDSAKETFEVIADYES+LDLFICHLNPSAM
Sbjct: 872 RSRDYPKCPPTSHLFHRFRQLGYACIRFGQFDSAKETFEVIADYESMLDLFICHLNPSAM 931
Query: 932 RRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 991
RRLAQ+LEEEG + ELRRYC+RILR RSTGWTQGIFANF+AESMVPKGPEWGGGNWEIKT
Sbjct: 932 RRLAQKLEEEGLDSELRRYCDRILRARSTGWTQGIFANFSAESMVPKGPEWGGGNWEIKT 991
Query: 992 PTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDF 1051
PT +K IPQWELA EV PYM+TDDG IPSII DH+G+YLGSIKGRG IVEV E SLVK F
Sbjct: 992 PTAVKDIPQWELAAEVTPYMKTDDGTIPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKVF 1051
Query: 1052 IPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAE 1111
+P G +NK NG+ +SSVKS +S S ++K SLMGLE+ Q SS+A DEQAKAE
Sbjct: 1052 MPTGNENKVNGLEASSVKSISKQSNVVS--NTKGDSLMGLESHNQQLASSSA-DEQAKAE 1108
Query: 1112 EEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGL 1171
EEFKK++YGAAADGSSSDEEG SK KKL+I+IRDKPIASS VDVNKIKEAT+QFKLGEGL
Sbjct: 1109 EEFKKSLYGAAADGSSSDEEGVSKMKKLRIKIRDKPIASSTVDVNKIKEATRQFKLGEGL 1168
Query: 1172 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1231
PPMR++S GSQDLGQ+ S P G + + S PGDLFGT++ Q +S+P +
Sbjct: 1169 APPMRSRSSSGGSQDLGQILSLPPPTTG---LASSTVSTPGDLFGTDALTQSEPISQPTT 1225
Query: 1232 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAP 1291
G + PIPEDFFQNTIPSLQVA +LPP GT+LS Y + GV K PNQ +A
Sbjct: 1226 GALGGGLKPGPIPEDFFQNTIPSLQVAQTLPPAGTFLSNY---TPGVEINKTTPNQVSAF 1282
Query: 1292 AADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1351
+ GL GGVPPQ QP +P+ESIGLPDGGVPPQSS Q QSQ+ AQ S+QP
Sbjct: 1283 QVNVGL-QGGVPPQTIQQPVVPIESIGLPDGGVPPQSSAQAVVMPQSQLQAAQAQISSQP 1341
Query: 1352 LDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALS 1411
LDLS LGV NS DSGK P A +V PGQVPRGA ASVCFKTGLAHLEQN L DALS
Sbjct: 1342 LDLSILGVTNSADSGKPPQTGAQ-QIAVHPGQVPRGAPASVCFKTGLAHLEQNNLSDALS 1400
Query: 1412 CFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMAR 1471
CFDEAFLALAK+ SR D+KAQATICAQYKIAVTLLQEI RLQKV GPS AISAKDEM R
Sbjct: 1401 CFDEAFLALAKEQSREIDIKAQATICAQYKIAVTLLQEIGRLQKVHGPS-AISAKDEMGR 1459
Query: 1472 LSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDM 1531
LSRHLGSLPL KHRINCIRTAIKRNM+VQNYAY+KQMLELLLSKAP SKQDE RSLID+
Sbjct: 1460 LSRHLGSLPLLAKHRINCIRTAIKRNMDVQNYAYSKQMLELLLSKAPPSKQDEFRSLIDL 1519
Query: 1532 CVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIK 1591
CVQRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++APGCI+CGMGSIK
Sbjct: 1520 CVQRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIK 1579
Query: 1592 RSDAL--AGPVPTPFG 1605
RSDAL AGPVP+PFG
Sbjct: 1580 RSDALAGAGPVPSPFG 1595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496870|ref|XP_003517288.1| PREDICTED: uncharacterized protein LOC100787845 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2434 bits (6308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1206/1634 (73%), Positives = 1353/1634 (82%), Gaps = 80/1634 (4%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+QHLDLRHVGRG +PLQPH A FHP+QAL+AVAIGT+I+EFD LTGS+I+++DI
Sbjct: 1 MEWTTLQHLDLRHVGRG-VRPLQPHAATFHPHQALVAVAIGTFIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+PVVRM YSPT GH V+AIL+D TIRSCDFD EQ+ VLHSPEKK E IS DTEVHLALT
Sbjct: 60 GAPVVRMLYSPTRGHTVIAILQDSTIRSCDFDFEQTCVLHSPEKKTEQISSDTEVHLALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQ +VFFGFH+R+SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQSIVFFGFHKRLSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL GAGAFAFHPTLEW+FVGDRRGTLLAWDVS ERPS+IG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLNGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTERPSIIG 239
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DGSLQVWKTRVI+NPN PPM A+FF PA+IES+D
Sbjct: 240 LTQVGSQPITSVSWLTTLCLLVTLSRDGSLQVWKTRVIVNPNTPPMPASFFVPAAIESLD 299
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IPRILSQQGGEA N T GD +KN+ Y+RE RKQLF+
Sbjct: 300 IPRILSQQGGEA------------------------NVTSGDPLKNKTTYSRERRKQLFS 335
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 395
VLQSARGSSAS LKEKLS++GSSG+LADHQLQAQLQEHHLKGH+HLTI DI RKAFLYS
Sbjct: 336 VLQSARGSSASTLKEKLSALGSSGVLADHQLQAQLQEHHLKGHNHLTILDIGRKAFLYS- 394
Query: 396 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 455
+ KSAPISRLPLITI D+KH LKD PV QPFHLELNFFN+ENRVLHYPVRAFYVDG
Sbjct: 395 --VCNTKSAPISRLPLITILDTKHYLKDFPVIQPFHLELNFFNKENRVLHYPVRAFYVDG 452
Query: 456 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 515
NL+A+NL SG+DSIY+KLY++IP +VEY K+++YSK+Q LFLV YEFSGTTNEVVLYR
Sbjct: 453 PNLMAHNLSSGSDSIYKKLYNSIPRSVEYQAKYLIYSKKQHLFLVAYEFSGTTNEVVLYR 512
Query: 516 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 575
EN D ++++SKSSTVKGRDAAFIGPNE+QFAILDDDKTGLA+Y L G QE EN+ +
Sbjct: 513 ENTDAEISNSKSSTVKGRDAAFIGPNENQFAILDDDKTGLAVYTLPGGASQET-KENDKL 571
Query: 576 VDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSA 635
+ NQ T+T VGS+QGP MFE+EVDRI+STP++STLMFA G+QIG+ KL+QGYRLS
Sbjct: 572 FEENQPTETTVGSIQGPTPFMFETEVDRIYSTPLDSTLMFASHGNQIGLVKLIQGYRLST 631
Query: 636 RA----GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDIL 691
+ GHY+ TKSEGKKSI LK E++L+V WQET RG+VAG+LTTQRVLIVSA DIL
Sbjct: 632 SSSKSNGHYISTKSEGKKSINLKRNEIVLQVYWQETLRGHVAGILTTQRVLIVSAAFDIL 691
Query: 692 ASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALND 751
A +ST FDKGLPSFRSLLWVGPALLFSTATAIS+LGWDGKVR ILS S+P AVLVGALND
Sbjct: 692 AGTSTNFDKGLPSFRSLLWVGPALLFSTATAISILGWDGKVRTILSTSVPYAVLVGALND 751
Query: 752 RLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD 811
RLLLA+PTEINP+QKKG+EIKSCLVGLLEPLLIGFATMQQ FEQKLDLSEILYQITSRFD
Sbjct: 752 RLLLASPTEINPKQKKGVEIKSCLVGLLEPLLIGFATMQQSFEQKLDLSEILYQITSRFD 811
Query: 812 SLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL 871
SLRITPRSLDILA+G PVCGDLAVSLSQ GP FTQV+RG+YA+KALRFS+ALSVLKDEFL
Sbjct: 812 SLRITPRSLDILARGSPVCGDLAVSLSQLGPHFTQVMRGVYAVKALRFSSALSVLKDEFL 871
Query: 872 RSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAM 931
RSRDYP+CPPT LFHRFRQLGYACI++GQFD AKETFEV ADY+S+LDLFICHLNPSAM
Sbjct: 872 RSRDYPRCPPTCHLFHRFRQLGYACIRFGQFDRAKETFEVTADYKSMLDLFICHLNPSAM 931
Query: 932 RRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 991
RRLAQ+LE+E + ELRR+CE ILRVRS+GWTQGIFANFAAESMVPKGPEWGGG+WEIKT
Sbjct: 932 RRLAQKLEDEDLDSELRRHCEWILRVRSSGWTQGIFANFAAESMVPKGPEWGGGDWEIKT 991
Query: 992 PTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDF 1051
PTN K IPQWELA EV+PYM+TDDG IPSII DH+G+Y+GSIKGRG +VEV E SLVK
Sbjct: 992 PTNAKDIPQWELAAEVLPYMKTDDGAIPSIILDHIGVYVGSIKGRGNVVEVREDSLVKAV 1051
Query: 1052 IPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAE 1111
IPAG D K NG+ SSVK N+ VD+ G + L + +S++ DEQAKA
Sbjct: 1052 IPAGNDFKANGLEISSVKPISNQR-----VDNSQGGPLSLN----KQLASSSTDEQAKAA 1102
Query: 1112 EEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGL 1171
EEFKK+MYGAAA SSSDEEG SKTKK+++RIRDKPIASS VDVNKIKEAT +FKL GL
Sbjct: 1103 EEFKKSMYGAAAADSSSDEEGVSKTKKIRVRIRDKPIASSTVDVNKIKEATSKFKLSGGL 1162
Query: 1172 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1231
P R++S GSQDL Q+ S P AA G ++A S PGDLFGT+ + QP +S+P +
Sbjct: 1163 -TPTRSRSFTSGSQDLDQILSLPPAATG---VSARTVSTPGDLFGTDVFTQPEPISQPTT 1218
Query: 1232 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAP 1291
+S G + PIPEDFFQNTI SLQ AASL P GTYLSK+ + G SGK NQ +A
Sbjct: 1219 GVASRGNKVGPIPEDFFQNTISSLQAAASLAPAGTYLSKF---AAGAESGKETRNQVSAS 1275
Query: 1292 AADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1351
AD L G VPPQ+ QPA+P+ES GLPDGGVPPQSS Q SQ+ Q P S+QP
Sbjct: 1276 KADVSL-QGDVPPQVVQQPAVPIESGGLPDGGVPPQSSAQASAMPPSQL---QEPTSSQP 1331
Query: 1352 LDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALS 1411
LDLS GVPN+ DSGK P SPP+SVRPGQVPR AAASVCFKTGLAHLE N L DALS
Sbjct: 1332 LDLSIFGVPNASDSGKPPQT-GSPPSSVRPGQVPREAAASVCFKTGLAHLELNHLSDALS 1390
Query: 1412 CFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMAR 1471
CFDE+FLALAK+ SRG+D+KAQATICAQYKI VTLLQEI RLQKV GPS AISAKDEMAR
Sbjct: 1391 CFDESFLALAKEQSRGSDIKAQATICAQYKITVTLLQEIGRLQKVHGPS-AISAKDEMAR 1449
Query: 1472 LSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDM 1531
LSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELLLSKAP SKQ+E RSLID+
Sbjct: 1450 LSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPPSKQEEFRSLIDL 1509
Query: 1532 CVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIK 1591
CVQRGL+NKSIDPLEDPSQFCA TLSRLSTIGYDVCDLCG+KFSA++APGCIICGMGSIK
Sbjct: 1510 CVQRGLTNKSIDPLEDPSQFCAFTLSRLSTIGYDVCDLCGSKFSAVTAPGCIICGMGSIK 1569
Query: 1592 RSDALAGPVPTPFG 1605
RSDALAGPVP+PFG
Sbjct: 1570 RSDALAGPVPSPFG 1583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185870|ref|NP_190628.6| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332645163|gb|AEE78684.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2417 bits (6264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1215/1670 (72%), Positives = 1362/1670 (81%), Gaps = 121/1670 (7%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEWATVQHLDLRHVGRG KPLQPH AAFHP+QA+IAVA+G++I+EFD LTG +IASIDI
Sbjct: 1 MEWATVQHLDLRHVGRGVSKPLQPHTAAFHPSQAVIAVAVGSHIMEFDALTGCKIASIDI 60
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
SP VRM YSPTS +AVVAILEDCTIRSCDF+TEQ+ VLHSPEK+ E IS DTEVHLA+T
Sbjct: 61 GSPAVRMLYSPTSSNAVVAILEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVT 120
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGF +RMSVTVVGTVEGGRAPTKIKTDLKKPIVN+ACHPRLPVLYVAYA+GLI
Sbjct: 121 PLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNIACHPRLPVLYVAYAEGLI 180
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GA +FAFHPTLEW+FVGDRRGTLLAWDVS ERP+MIG
Sbjct: 181 RAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTLLAWDVSTERPNMIG 240
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DGSLQVWKTRVIINPNRP Q NFFEPA++ESID
Sbjct: 241 ITQVGSQPITSISWLPMLRVLVTVSKDGSLQVWKTRVIINPNRPSTQTNFFEPAAMESID 300
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 335
IP+ILSQQGGEAVYPLPR++ LEVHP+LNLA L+FAN G +N +NRAA TREGRKQLFA
Sbjct: 301 IPKILSQQGGEAVYPLPRIKTLEVHPKLNLAALIFANMVGNENTQNRAAQTREGRKQLFA 360
Query: 336 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 395
VLQSARGSSASVLKEKLSSMGSSGILA+HQLQA LQEH KG S LTISDIARKAFLYSH
Sbjct: 361 VLQSARGSSASVLKEKLSSMGSSGILAEHQLQALLQEH--KGQSQLTISDIARKAFLYSH 418
Query: 396 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 455
FMEGHAK+APISRLPLIT+ D+K QLKDIPVCQPFHLELNFFN+ NRVLHYPVR+FY++G
Sbjct: 419 FMEGHAKTAPISRLPLITVVDTKDQLKDIPVCQPFHLELNFFNKPNRVLHYPVRSFYIEG 478
Query: 456 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 515
+NL+A+NLCSG D+IY+KLY++IPG VEY+ KH+VYS+++ LFLVV+EFSG TNEVVLY
Sbjct: 479 LNLMAHNLCSGTDNIYKKLYTSIPGNVEYHSKHIVYSRKRHLFLVVFEFSGATNEVVLYW 538
Query: 516 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 575
EN +QL +SK ST KG DAAFIGPN+DQFAILD+DKTGL++YIL +T E +E N +
Sbjct: 539 ENTGSQLPNSKGSTAKGCDAAFIGPNDDQFAILDEDKTGLSMYILPKLTTMEE-NEKNLL 597
Query: 576 VDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSA 635
+ NQ + + +QGP Q MFE+EVDR+FSTPIESTLMFAC+G QIG+AKL QGYRLSA
Sbjct: 598 SEENQKKEADPSGIQGPQQFMFETEVDRVFSTPIESTLMFACNGTQIGLAKLFQGYRLSA 657
Query: 636 RAGHYLQTKSEGKKSIKLKVTEVMLK------------------------------VAWQ 665
GHY+ T+ EG+KSIKLK E+ L+ V WQ
Sbjct: 658 SDGHYISTQGEGRKSIKLKKHEIALQSFYSLPFNVVYIWPVLFEIKTIMFRKLTRHVQWQ 717
Query: 666 ETQRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISV 725
ET RGYVAG+LTTQRVL+VS LLWVGPALLFST TA+ +
Sbjct: 718 ETPRGYVAGILTTQRVLMVS----------------------LLWVGPALLFSTTTAVCL 755
Query: 726 LGWDGKVRNILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIG 785
LGWDGKVR ILSIS P A LVGALNDRLLLA+PT+I+P+QKKGIEIKSCLVGLLEPLLIG
Sbjct: 756 LGWDGKVRTILSISTPYAALVGALNDRLLLAHPTDISPKQKKGIEIKSCLVGLLEPLLIG 815
Query: 786 FATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFT 845
F+TMQQ FEQK+DLSEILYQIT+RFDSLRITPRSLDILA+ PVCGDLAVSL+QAGPQF
Sbjct: 816 FSTMQQTFEQKVDLSEILYQITTRFDSLRITPRSLDILARSAPVCGDLAVSLAQAGPQFN 875
Query: 846 QVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSA 905
QVLR YAIKALRFSTALSVLKDEFLRSRDYPKCPPTS LF RFRQLGYACIKYGQFDSA
Sbjct: 876 QVLRCAYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSLLFQRFRQLGYACIKYGQFDSA 935
Query: 906 KETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQG 965
KETFEVI DYES+LDLFICHLNPSAMRRLAQ+LEEE +PELRRYCERILRVRSTGWTQG
Sbjct: 936 KETFEVIGDYESMLDLFICHLNPSAMRRLAQKLEEESGDPELRRYCERILRVRSTGWTQG 995
Query: 966 IFANFAAESMVPKGPEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDH 1025
IFANFAAESMVPKGPEWGGGNWEIKTPT++KSIP+WELA EV+PYM+ +DG IPSI++DH
Sbjct: 996 IFANFAAESMVPKGPEWGGGNWEIKTPTDMKSIPKWELAGEVMPYMKNEDGTIPSIVADH 1055
Query: 1026 VGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKV 1085
+G+YLG +KGR +VE+ E SLV +KP G+ S+ K + +
Sbjct: 1056 IGVYLGCVKGRVNVVEIKEDSLV---------SKPGGL---SLLGKPVSDKPLALPAGES 1103
Query: 1086 GSLMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRD 1145
S+MGLE+L QN + DEQAKA EEFKKTMYGA DGSSSDEEG +K KKLQIRIR+
Sbjct: 1104 SSMMGLESLGKQNVA----DEQAKAAEEFKKTMYGATGDGSSSDEEGVTKPKKLQIRIRE 1159
Query: 1146 KPIASSAVDVNKIKEATKQFKLGEGLGPPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNIT 1204
KP S+ VDVNK+KEA K FKLG+GLG M RTKS+ GSQDLGQ+ SQPS++ T
Sbjct: 1160 KP-TSTTVDVNKLKEAAKTFKLGDGLGLTMSRTKSINAGSQDLGQMLSQPSSS-TVATTT 1217
Query: 1205 APAS-SAPGDLFGTESWV-QPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLP 1262
AP+S SAP D F SW QP VS+PA G + PIPEDFFQNTIPS++VA +LP
Sbjct: 1218 APSSASAPVDPFAMSSWTQQPQPVSQPAPPGVAA-----PIPEDFFQNTIPSVEVAKTLP 1272
Query: 1263 PPGTYLSKYDQVSQGVASGKVAPNQA-NAPAADSGLPDGGV----PPQIAPQPAIPVESI 1317
PPGTYLSK DQ ++ + + PNQA N P D GLPDGGV P Q + QP P +++
Sbjct: 1273 PPGTYLSKMDQAARAAIAAQGGPNQANNTPLPDIGLPDGGVPQQYPQQTSQQPGAPFQTV 1332
Query: 1318 GLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPT 1377
GLPDGGV Q +P Q+QV P+QVP STQPLDLS LGVPN+GDSGK P P SPP
Sbjct: 1333 GLPDGGVRQQ------YPGQNQV-PSQVPVSTQPLDLSVLGVPNTGDSGKPPGQPQSPPA 1385
Query: 1378 SVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATIC 1437
SVRPGQVPRGAAA VCFKTGLAHLEQNQLPDALSCFDEAFLALAKD SRGAD+KAQATIC
Sbjct: 1386 SVRPGQVPRGAAAPVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDQSRGADIKAQATIC 1445
Query: 1438 AQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRN 1497
AQYKIAVTLL+EILRLQ+VQG S A+SAKDEMARLSRHL SLPL KHRINCIRTAIKRN
Sbjct: 1446 AQYKIAVTLLREILRLQRVQGAS-ALSAKDEMARLSRHLASLPLLAKHRINCIRTAIKRN 1504
Query: 1498 MEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLS 1557
MEVQNY Y+KQMLELLLSKAPASKQ+ELR L+D+CVQRG SNKSIDPLEDPSQ C+ATLS
Sbjct: 1505 MEVQNYGYSKQMLELLLSKAPASKQEELRGLVDLCVQRGTSNKSIDPLEDPSQLCSATLS 1564
Query: 1558 RLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALAGPVP--TPFG 1605
RLSTIGYDVCDLCGAKF+ALS+PGCIICGMGSIKRSDALAGP P TPFG
Sbjct: 1565 RLSTIGYDVCDLCGAKFAALSSPGCIICGMGSIKRSDALAGPAPVSTPFG 1614
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518605|ref|XP_003629591.1| Vascular protein [Medicago truncatula] gi|355523613|gb|AET04067.1| Vascular protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2380 bits (6169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1194/1675 (71%), Positives = 1358/1675 (81%), Gaps = 101/1675 (6%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW+T+QHLDLRH+GRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWSTLQHLDLRHIGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRMAYSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E IS DTEVH+ALT
Sbjct: 60 GAPAVRMAYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKSEQISSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIK DLKK IVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKPDLKKAIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR+GTLLAWDVS ERPSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRQGTLLAWDVSTERPSMIG 239
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DG+LQVW+TRV +NPNRP QA+FFEPA+IESID
Sbjct: 240 IKQVGSQPIKSVAFLPTLRLLVTLSKDGNLQVWETRVTVNPNRPSTQASFFEPAAIESID 299
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFA-----NFTGGDNIKNRAAYTREGR 330
IPRILSQQGGEAVYPLPR++A+E HP+ NLA L+FA N T + KN+A+Y+REGR
Sbjct: 300 IPRILSQQGGEAVYPLPRIKAIEFHPKSNLAALVFAVACYVNVTSAETSKNKASYSREGR 359
Query: 331 KQLFAVLQSARGSSASVLKEKLSSMG------SSGIL-----------------ADHQLQ 367
KQLFAVLQSARGSS ++ L S+ S GI+ H L
Sbjct: 360 KQLFAVLQSARGSSDMLMVRVLCSICYKGKTFSLGIIWGVSRPSASSSTPRASSKRHCLL 419
Query: 368 AQLQEHHLK-----------GHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFD 416
+++ EH HS++TISDIARK HFMEGH K +PISRLPLIT+ D
Sbjct: 420 SEI-EHDTYICLWGSFAACCNHSNITISDIARK-----HFMEGHMKISPISRLPLITVLD 473
Query: 417 SKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYS 476
+KH LKD PVC+P+HLELNFFN+ NRVLHYP RAFY+DG+NL+A++L SG+D IYRKLY+
Sbjct: 474 TKHHLKDFPVCEPYHLELNFFNKANRVLHYPSRAFYMDGLNLMAHSLSSGSDIIYRKLYN 533
Query: 477 TIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKG---- 532
+IPG VEY K++++SK+Q+LFLVVYEFSG+TNEVVLY EN D Q +SKSSTVKG
Sbjct: 534 SIPGNVEYRAKYLIHSKKQRLFLVVYEFSGSTNEVVLYWENTDVQTGNSKSSTVKGISSR 593
Query: 533 RDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGP 592
RDAAFIG NE+QFAILD+D+TGLALY L G T QE D N+ V + NQ T+TNVGS++GP
Sbjct: 594 RDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKD-NDKVFEENQPTETNVGSIRGP 652
Query: 593 LQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSARA--GHYLQTKSEGKKS 650
MFE+EVDRIFSTP++STLMFA G+QIG+ KL++GYRLS GHY+ TKS+GKKS
Sbjct: 653 TPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLSTSTANGHYISTKSDGKKS 712
Query: 651 IKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLW 710
IKLK E++L+V WQET RG VAG+LTT RVLIVSA LD+LA +STK SLLW
Sbjct: 713 IKLKRNEIVLQVHWQETLRGNVAGILTTHRVLIVSAALDVLAGTSTK---------SLLW 763
Query: 711 VGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIE 770
VGPALLFST A+S+LGWDGKVR +LSISMP AVLVGALNDRLLLA+PTEINPRQKKG+E
Sbjct: 764 VGPALLFSTTAAVSILGWDGKVRPVLSISMPYAVLVGALNDRLLLASPTEINPRQKKGVE 823
Query: 771 IKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVC 830
IKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFDSLRITPRSLDILAKG PVC
Sbjct: 824 IKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGSPVC 883
Query: 831 GDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFR 890
GDLAVSLSQ+GPQFTQV+RG+YA+KALRFSTALSVLKDEFLRSRDYP+CPPTS LFHRFR
Sbjct: 884 GDLAVSLSQSGPQFTQVMRGVYAVKALRFSTALSVLKDEFLRSRDYPRCPPTSHLFHRFR 943
Query: 891 QLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRY 950
QL YACI++GQFDSAKETFE IADYE +LDLFICHLNPSAMRRLAQ+LE+EG + ELRRY
Sbjct: 944 QLAYACIRFGQFDSAKETFETIADYEGMLDLFICHLNPSAMRRLAQKLEDEGLDSELRRY 1003
Query: 951 CERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTNLKSIPQWELATEVVPY 1010
CERILR+RSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT +K IPQWELA EV PY
Sbjct: 1004 CERILRIRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTTVKDIPQWELAAEVTPY 1063
Query: 1011 MRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKS 1070
M+TDDG +PSII DH+G+YLGSIKGRG IVEV E SLVK F+PAG DNK NG+ SSVKS
Sbjct: 1064 MKTDDGTVPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKAFMPAGNDNKVNGLELSSVKS 1123
Query: 1071 TYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDE 1130
N+ + K S MGLE+L Q +S+A DEQAKAEEEFKK+MYG AADGSSSDE
Sbjct: 1124 ISNQPNVVG--NPKGDSSMGLESLNKQLANSSA-DEQAKAEEEFKKSMYG-AADGSSSDE 1179
Query: 1131 EGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGPPMRTKSLIPGSQDLGQL 1190
EG SK K++ I+IRDKPI+SS VDVNKIKEATKQFKLGEGL PPMRT+S GSQDLGQ+
Sbjct: 1180 EGASKIKRIHIKIRDKPISSSTVDVNKIKEATKQFKLGEGLPPPMRTRS-NSGSQDLGQI 1238
Query: 1191 SSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQN 1250
S P G I S P DLFGT++ QP +S+P + G PIPEDFFQN
Sbjct: 1239 LSLPPVTTG---IPTATVSTPVDLFGTDASTQPEMISQPTTGAVGGGVAIGPIPEDFFQN 1295
Query: 1251 TIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQP 1310
TI S+ VAASLPP GT+LSK+ + G+ + PNQA+A A GL GGV Q QP
Sbjct: 1296 TISSVHVAASLPPAGTFLSKF---TPGIQTSNTTPNQASATEAGFGL-QGGVSNQAIQQP 1351
Query: 1311 AIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPA 1370
+P+ESIGLPDGGVPPQS Q Q Q+ PAQ S+QPLDLS LGVPNS DSGK P
Sbjct: 1352 VVPMESIGLPDGGVPPQSMPQAVVTPQPQLQPAQPQISSQPLDLSVLGVPNSADSGKLPQ 1411
Query: 1371 NPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADV 1430
+ S P SV PGQVPRGA ASVCFKTGLAHLE N L DALSCFDE+FLALAK+ SRG+D+
Sbjct: 1412 S-GSAPVSVHPGQVPRGAPASVCFKTGLAHLELNHLSDALSCFDESFLALAKEQSRGSDI 1470
Query: 1431 KAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCI 1490
KAQATICAQYKIAVTLL+EI RLQ+V GPS AISAKDEMARLSRHLGSLPL KHRINCI
Sbjct: 1471 KAQATICAQYKIAVTLLREIGRLQRVHGPS-AISAKDEMARLSRHLGSLPLLAKHRINCI 1529
Query: 1491 RTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQ 1550
RTAIKRNMEVQNYAY+KQMLELLLSKAP++KQ+E RSL+D+CVQRGL+NKSIDPLEDPSQ
Sbjct: 1530 RTAIKRNMEVQNYAYSKQMLELLLSKAPSNKQEEFRSLVDLCVQRGLTNKSIDPLEDPSQ 1589
Query: 1551 FCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALAGPVPTPFG 1605
FC+ATLSRLSTIGYDVCDLCGAKFSA++APGCI+CGMGSIKRSDA+A VP+PFG
Sbjct: 1590 FCSATLSRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIKRSDAIAASVPSPFG 1644
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816310|ref|XP_002876038.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321876|gb|EFH52297.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2355 bits (6102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1186/1652 (71%), Positives = 1335/1652 (80%), Gaps = 120/1652 (7%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEWATVQHLDLRHVGRG KPLQPH AAFHP+QA+IAVA+G++I+EFD LTG +IASIDI
Sbjct: 1 MEWATVQHLDLRHVGRGVSKPLQPHTAAFHPSQAVIAVAVGSHIMEFDALTGCKIASIDI 60
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
SP VRM YSPTS +AVVAILEDCTIRSCDF+TEQ+ VLHSPEK+ E IS DTEVHLA+T
Sbjct: 61 GSPAVRMLYSPTSSNAVVAILEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVT 120
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGF +RMSVTVVGTVEGGRAPTKIKTDLKKPIVN+ACHPRLPVLYVAYA+GLI
Sbjct: 121 PLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNIACHPRLPVLYVAYAEGLI 180
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GA +FAFHPTLEW+FVGDRRGTLLAWDVS ERP+MIG
Sbjct: 181 RAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTLLAWDVSTERPNMIG 240
Query: 241 M-------------------------DGSLQVWKTRVIINPNRPPMQANFFEPASIESID 275
+ DGSLQVWKTRVIINPNRP Q NFFEPA++ESID
Sbjct: 241 ITQVGSQPITSISWLSMLRVLVTVSKDGSLQVWKTRVIINPNRPSTQTNFFEPAAMESID 300
Query: 276 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYT------REG 329
+PRILSQQGGEAVYPLPR++ LEVHP+LNLA L+FA +KN + + R
Sbjct: 301 VPRILSQQGGEAVYPLPRIKTLEVHPKLNLAALIFA-------VKNTSYWHSSLRTWRVM 353
Query: 330 RKQLFAVLQSARGSSASV--------LKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 381
R L+ + S+S+ L+EKLSSMGSSGILA+HQLQA LQEHH KG S L
Sbjct: 354 RTLKIEQLRLGKEGSSSLQFCKVLGDLQEKLSSMGSSGILAEHQLQALLQEHHHKGQSQL 413
Query: 382 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNREN 441
TISDIARKAFLYS GHAK+APISRLPLIT+ D+K QLKDIP PFHLELNFFN+ N
Sbjct: 414 TISDIARKAFLYS----GHAKTAPISRLPLITVVDAKDQLKDIP---PFHLELNFFNKPN 466
Query: 442 RVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVV 501
RVLHYPVRAFY++G+NL+A+NLCSG D+IY+KLY++IPG VEY+ KH+VYS+++ LFLVV
Sbjct: 467 RVLHYPVRAFYIEGLNLMAHNLCSGTDNIYKKLYTSIPGNVEYHSKHIVYSRKRHLFLVV 526
Query: 502 YEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 561
+EFSG TNEVVLY EN +QL +SK ST KG DAAFIGPN+DQFAILD+DKTGL++YIL
Sbjct: 527 FEFSGATNEVVLYWENTGSQLPNSKGSTAKGCDAAFIGPNDDQFAILDEDKTGLSMYILP 586
Query: 562 GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQ 621
T E +E N + + NQ+ + + +QGP Q MFE+EVDR+FSTPIESTLMFAC+G Q
Sbjct: 587 KYTTMEE-NEKNLLSEENQNKEADASGIQGPQQFMFETEVDRVFSTPIESTLMFACNGTQ 645
Query: 622 IGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRV 681
IG+AKL QGYRLSA GHY+ T+ EG+KSIKLK E+ L+V WQET RGYVAG+LTTQRV
Sbjct: 646 IGLAKLFQGYRLSASDGHYISTQGEGRKSIKLKKHEIALQVQWQETPRGYVAGILTTQRV 705
Query: 682 LIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMP 741
L+VS LLWVGPALLFST TA+ +LGWDGKVR ILSIS P
Sbjct: 706 LMVS----------------------LLWVGPALLFSTTTAVCLLGWDGKVRTILSISTP 743
Query: 742 NAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSE 801
A LVGALNDRLLLANPT+I+P+QKKGIEIKSCLVGLLEPLLIGF+TMQQ FEQK+DLSE
Sbjct: 744 YAALVGALNDRLLLANPTDISPKQKKGIEIKSCLVGLLEPLLIGFSTMQQTFEQKVDLSE 803
Query: 802 ILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFST 861
ILYQIT+RFDSLRITPRSLDILA+ PVCGDLAVSL+QAGPQF QVLR YAIKALRFST
Sbjct: 804 ILYQITTRFDSLRITPRSLDILARSAPVCGDLAVSLAQAGPQFNQVLRCAYAIKALRFST 863
Query: 862 ALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDL 921
ALSVLKDEFLRSRDYPKCPPTS LF RFRQLGYACIKYGQFDSAKETFEVI DYES+LDL
Sbjct: 864 ALSVLKDEFLRSRDYPKCPPTSLLFQRFRQLGYACIKYGQFDSAKETFEVIGDYESMLDL 923
Query: 922 FICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPE 981
FICHLNPSAMRRLAQ+LEEE +PELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPE
Sbjct: 924 FICHLNPSAMRRLAQKLEEESGDPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPE 983
Query: 982 WGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVE 1041
WGGGNWEIKTPT++KSIP+WELA EV+PYM+ +DG IPSI++DH+G+YLG +KGR +VE
Sbjct: 984 WGGGNWEIKTPTDMKSIPKWELAGEVMPYMKNEDGTIPSIVADHIGVYLGCVKGRVNVVE 1043
Query: 1042 VTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSS 1101
+ E SLV +KP G+ S+ K + + SLMGLE+L QN +
Sbjct: 1044 IKEDSLV---------SKPGGL---SLLGKPVSDKPLALPAGESSSLMGLESLGKQNVA- 1090
Query: 1102 AADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEA 1161
DEQAKA EEFKKTMYGAA DGSSSDEEG +K KKLQIRIR+KP S+ VDVNK+KEA
Sbjct: 1091 ---DEQAKAAEEFKKTMYGAAGDGSSSDEEGVTKPKKLQIRIREKP-TSTTVDVNKLKEA 1146
Query: 1162 TKQFKLGEGLGPPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESW 1220
K FKLG+GLG M RTKS+ GSQDLGQ+ SQPS++ ++SAP D F SW
Sbjct: 1147 AKTFKLGDGLGLTMSRTKSINTGSQDLGQMLSQPSSSTAATTTAPGSASAPVDPFAMGSW 1206
Query: 1221 V-QPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQ---VSQ 1276
QP VS+PA G + PIPEDFFQNTIPS++VA +LPPPGTYLSK DQ +Q
Sbjct: 1207 TQQPQPVSQPAPPGVAA-----PIPEDFFQNTIPSVEVAKTLPPPGTYLSKMDQAAIAAQ 1261
Query: 1277 GVASGKVAPNQA-NAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFP 1335
GV PNQA N D GLPDGG+P Q + QP P +++GLPDGGVP Q GQT
Sbjct: 1262 GV------PNQANNTTLPDIGLPDGGIPQQTSQQPGAPFQTVGLPDGGVPQQYPGQT--- 1312
Query: 1336 YQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFK 1395
+ P+QVP STQPLDLS LGVPN+GDSGK P P SPP SVRPGQVPRGAAA VCFK
Sbjct: 1313 ----LGPSQVPVSTQPLDLSVLGVPNTGDSGKPPGQPQSPPASVRPGQVPRGAAAPVCFK 1368
Query: 1396 TGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQK 1455
TGLAHLEQNQLPDALSCFDEAFLALAKD SRGAD+KAQATICAQYKIAVTLL+EILRLQ+
Sbjct: 1369 TGLAHLEQNQLPDALSCFDEAFLALAKDQSRGADIKAQATICAQYKIAVTLLREILRLQR 1428
Query: 1456 VQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLS 1515
VQG S A+SAKDEMARLSRHL SLPL KHRINCIRTAIKRNMEVQNY Y+KQMLELLLS
Sbjct: 1429 VQGAS-ALSAKDEMARLSRHLASLPLLAKHRINCIRTAIKRNMEVQNYGYSKQMLELLLS 1487
Query: 1516 KAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFS 1575
KAPAS+Q+ELR L+D+CVQRG SNKSIDPLEDPSQ C+ATLSRLSTIGYDVCDLCGAKF+
Sbjct: 1488 KAPASRQEELRGLVDLCVQRGTSNKSIDPLEDPSQLCSATLSRLSTIGYDVCDLCGAKFA 1547
Query: 1576 ALSAPGCIICGMGSIKRSDALAGPVP--TPFG 1605
ALS+PGCIICGMGSIKRSDALAGP P TPFG
Sbjct: 1548 ALSSPGCIICGMGSIKRSDALAGPAPVSTPFG 1579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1605 | ||||||
| DICTYBASE|DDB_G0278661 | 1340 | DDB_G0278661 "WD40 repeat-cont | 0.310 | 0.372 | 0.226 | 2e-15 | |
| DICTYBASE|DDB_G0289571 | 943 | DDB_G0289571 [Dictyostelium di | 0.117 | 0.200 | 0.258 | 1.6e-06 | |
| FB|FBgn0038642 | 950 | Muc91C "Mucin 91C" [Drosophila | 0.131 | 0.222 | 0.285 | 0.00015 |
| DICTYBASE|DDB_G0278661 DDB_G0278661 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 130/574 (22%), Positives = 233/574 (40%)
Query: 419 HQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTI 478
H P+ L + FF +YP + DG + +Y +G I +KL T
Sbjct: 576 HLNHSFPLVSKLPLPMGFFFEPENTFNYPSEITFFDGTYVKSYLPLNG---ITKKLIDTP 632
Query: 479 ----------PGTVEYYPK--HMVYSKRQQLFLVVYEFSGTTNEVVLYRENV-DTQ-LAD 524
G E K +++ QLF ++Y+ + L + + D Q L +
Sbjct: 633 IMVNSASGMGSGGGEDISKGKKFLFNNEFQLFALIYDSFSVAAQAQLSKYLIMDLQGLVN 692
Query: 525 SKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDT 584
+ G D FIG N+ Q IL GL + K TL + GV S+
Sbjct: 693 QQGD---GSDCVFIGNNQ-QILIL-----GLDGKLAKVATLSK-----QGV-----SSFK 733
Query: 585 NVGSVQGPLQLMFESEVDRIFSTPI--ESTLMFACDGDQ-IGMAKLVQGYRLSARAGHYL 641
N V P + + STP+ +++ C + +K V S + + +
Sbjct: 734 NFTLV--P-------RITSVHSTPLGGNKVVLYFCQEKSCLVFSKNVNQSDPSCKDNYMV 784
Query: 642 QTKSEGKKSI-KLKVTEVMLKVAWQETQRG--YVAGVLTTQRVLIVSADLDILAS--SST 696
+G I +L+ E + ++ WQ + ++ +LT QR++I ++ L I+ S
Sbjct: 785 DI--DGDNGILQLQPNEKVFQIEWQSDPKSSQHICAILTNQRIIITNSRLRIINQIHSPP 842
Query: 697 KFDKGLPS-FRSLLWVGPALLFSTATAISVLGWDGKV--RNILSISMPNAVLVGALNDRL 753
+ S F+S+ W+ LL++T+T + + + I ++S+ +L L DR+
Sbjct: 843 NHHQSTSSYFQSIFWLEWTLLYTTSTHLMYMTLQNNQAPKPISTLSISPIILSTILPDRM 902
Query: 754 LLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFE-QKLDLSEILYQITSRFDS 812
+ P K ++ +G+LE L+IG ++ + + +K LS L I + D
Sbjct: 903 IFGYQGLQVPG-KNETTVRCQAIGILECLIIGLLSLPPFIQYEKKYLSSCLQNIVQKLDY 961
Query: 813 LRITPRSLDILAKGPPVCGDLAVSLS------QAGPQFTQVLRGIYAIKALRFSTALSVL 866
RI+ LD L + DLA SLS Q+ + R + K ++ A L
Sbjct: 962 TRISKHVLDKLRERSFT--DLAYSLSNDMKISQSKQSSLEKFRMAWISK--QYEAANRHL 1017
Query: 867 KDEFLRSRDYPKCPPT-----SQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDL 921
EF R T ++L R G C+ G + AK+ F+ ++++ +L +
Sbjct: 1018 SIEFNRISIIKNPNDTEKRQFNKLKENMRDFGRECMNAGHYLLAKDCFQKLSEHIYLLQI 1077
Query: 922 FICHLNPSAMRRLAQRLEEEGANPELRRYCERIL 955
I + ++ + + E G + L C++ L
Sbjct: 1078 SILLNDRDSVIAIKRDAELRGDDHVLLAACDKYL 1111
|
|
| DICTYBASE|DDB_G0289571 DDB_G0289571 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 53/205 (25%), Positives = 95/205 (46%)
Query: 1361 NSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLAL 1420
N D+ S +NP SP + + + K + +E +A+ D+ L
Sbjct: 685 NFTDTASSNSNPTSPISQ------KLNSESIEYMKKCINQMENGNFKEAILDLDQCIKIL 738
Query: 1421 AKDHSRGADV-KAQATICAQYKIAVTLLQEILRLQK-VQGPSAA--ISAKDE-MARLSRH 1475
+ HS + + + C YK+ + LL EI ++K ++ S +S+ E +A LS+
Sbjct: 739 LQVHSNNLSIIQNEINFCVGYKVTLNLLIEIKEIEKKIEQESNKDEVSSYYETIALLSKF 798
Query: 1476 LGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP--ASKQDELRSL-IDMC 1532
L +PLQT HR+ C + A+K N+ N+ A +++E++L K K+ E + + C
Sbjct: 799 LVDIPLQTNHRLVCAKMAVKYNLISNNFGIAGKLIEIILQKGINLGDKEKEQYEIQLQQC 858
Query: 1533 VQRGLSNKSIDPLEDPSQFCAATLS 1557
+N S+ PS C ++ S
Sbjct: 859 RDNQFNNSSLPMYICPS--CKSSTS 881
|
|
| FB|FBgn0038642 Muc91C "Mucin 91C" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 0.00015, P = 0.00015
Identities = 66/231 (28%), Positives = 88/231 (38%)
Query: 1173 PPMRTKSL-IPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSK--- 1228
PP ++ P S G S PS++ G AP+SS + S+ PA+ S
Sbjct: 255 PPSQSYGAPAPPSSKYGPPKSAPSSSYGAPRPAAPSSSYGAPAPPSSSYGAPAAPSSSYG 314
Query: 1229 -PASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTY-LSKYDQVSQGVASGKVAPN 1286
PA+ SS GA P + PS A PP +Y S G + +
Sbjct: 315 APAAPSSSYGAPAAP-SSSYGAPAPPSKSYGAPAPPSSSYGAPAAPSKSYGAPAPPSSSY 373
Query: 1287 QANAPAADS-GLPDXXXXXXXXXXXXXXXESIGLPDGGVPPQSS-GQTPFPYQSQVLPAQ 1344
A AP + S G P +S G P PP SS G P +S PA
Sbjct: 374 GAPAPPSSSYGAP--APPSPSYGAPAPPSKSYGAP---APPSSSYGAPAAPSKSYGAPA- 427
Query: 1345 VPPSTQ---PLD-LSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAAS 1391
PPS+ P S+ G P++ S P PA P S G P+ +S
Sbjct: 428 -PPSSSYGAPAPPSSSYGAPSAPSSSYGPPKPAPAPPSSSYGAPPQAPVSS 477
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1605 1560 0.00080 125 3 11 22 0.41 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 631 (67 KB)
Total size of DFA: 596 KB (2266 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 144.88u 0.09s 144.97t Elapsed: 00:00:06
Total cpu time: 144.88u 0.09s 144.97t Elapsed: 00:00:06
Start: Sat May 11 05:49:32 2013 End: Sat May 11 05:49:38 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1605 | |||
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 8e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-05 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-04 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 5e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 0.002 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.004 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.004 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-06
Identities = 42/195 (21%), Positives = 54/195 (27%), Gaps = 8/195 (4%)
Query: 1194 PSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIP 1253
A G APASS P E +PA+ + PA+ + A P + P
Sbjct: 591 APGAAGGEGPPAPASSGPP-----EEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
Query: 1254 SLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPD---GGVPPQIAPQP 1310
+ P D A A A PA P G P Q AP P
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705
Query: 1311 AIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPA 1370
A + D P + Q P G P +PA
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765
Query: 1371 NPASPPTSVRPGQVP 1385
A+P + P
Sbjct: 766 PAAAPAAAPPPSPPS 780
|
Length = 824 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-05
Identities = 48/250 (19%), Positives = 70/250 (28%), Gaps = 33/250 (13%)
Query: 1173 PPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASA 1232
P + PG ++P G PA+ A G P +++PA A
Sbjct: 2742 PAVPAGPATPGGP---ARPARPPTTAGPPAPAPPAAPAAG---------PPRRLTRPAVA 2789
Query: 1233 GSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPA 1292
S + P P D L AA+LPP + + ++ AP P
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP---LPPPTSAQPTAPPPPPGPP 2846
Query: 1293 ADSGLPDGGVPP-----------QIAPQPA----IPVESIGLPDGGVPPQSSGQTPFPYQ 1337
S G V P A +PA PV + P +S+ P
Sbjct: 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARP---AVSRSTESFALPPD 2903
Query: 1338 SQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTG 1397
P Q P P P PP + G + +
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963
Query: 1398 LAHLEQNQLP 1407
L L ++
Sbjct: 2964 LGALVPGRVA 2973
|
Length = 3151 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 72/306 (23%), Positives = 100/306 (32%), Gaps = 46/306 (15%)
Query: 1120 GAAADGSSSDEEGTSKTKKL-QIRIRDKPIASSAVDVNKIKEATKQFKL----------- 1167
G ++D S +EEG+S K + Q P S D +++ Q +L
Sbjct: 124 GESSDSRSVNEEGSSDPKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQV 183
Query: 1168 ------GEGLGPPMRTKSLIP--GSQDLGQLSSQPSAAGGDGNITAPA-------SSAPG 1212
PP + +P GS Q + QP I+AP+ S P
Sbjct: 184 PPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPP 243
Query: 1213 DLFGTESWVQPASVSKPASA-GSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSK- 1270
T S P + + SS G P+P Q LQ +S PP L++
Sbjct: 244 LQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHAL-QQGPVFLQHPSSNPPQPFGLAQS 302
Query: 1271 -----------YDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGL 1319
+ + P Q P + LP P I P P P+ +
Sbjct: 303 QVPPLPLPSQAQPHSHTPPSQSALQPQQ---PPREQPLPPAPSMPHIKPPPTTPIPQLPN 359
Query: 1320 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1379
PP G +PFP LP PP+ +PL P S P S P
Sbjct: 360 QSHKHPPHLQGPSPFPQMPSNLPP--PPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQS 417
Query: 1380 RPGQVP 1385
P Q P
Sbjct: 418 VPAQPP 423
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 5e-05
Identities = 56/226 (24%), Positives = 79/226 (34%), Gaps = 29/226 (12%)
Query: 1172 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1231
GPP P + +L+ A+ + + P+ P D PA+V PA+
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD--------PPAAVLAPAA 2816
Query: 1232 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPG---TYLSKYDQVSQGVASGKVAPNQA 1288
A + P+P S Q A PPPG L V+ G + P+++
Sbjct: 2817 ALPPAASPAGPLP------PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870
Query: 1289 NA--PAADSGLPDGGVP-------PQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ 1339
A PAA + P + + P E P PPQ Q P P Q Q
Sbjct: 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
Query: 1340 VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVP 1385
P P PL A +G S A P ++ PG+V
Sbjct: 2931 PPPPPPPRPQPPL---APTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
|
Length = 3151 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.0 bits (110), Expect = 8e-05
Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 21/237 (8%)
Query: 5 TVQHLDLRHVGRGDHKPLQPHEA-----AFHPNQALIAVAIGT--YIIEFDTLTGSRIAS 57
TV+ DL G+ L+ H AF P+ L+A I +D TG +++
Sbjct: 135 TVKLWDLSTPGKLIRT-LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 58 IDI-NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVH 116
+ PV +A+SP G + + D TIR +D +L S V
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL--WDLSTGKLLRSTLSGHSDSVV----- 246
Query: 117 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176
+ +P ++ G + + + + + ++++A P +L +
Sbjct: 247 SSFSPDGSLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304
Query: 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVS 232
DG +R +++ T + +L L + + +F P L G GT+ WD+
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPV--SSLSFSPDGSLLVSGGSDDGTIRLWDLR 359
|
Length = 466 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 32/192 (16%), Positives = 47/192 (24%), Gaps = 8/192 (4%)
Query: 1204 TAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPP 1263
AP ++ S P ++PA+ + P+ AA P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAG---AAAAPAEASAAPAPG 646
Query: 1264 PGTYLSKYDQVSQGVASGKVAPNQAN----APAADSGLPDGGVPPQIAPQPAIPVESIGL 1319
V+ AS A APAA P P A +
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP-AQPAPAP 705
Query: 1320 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1379
Q+ P Q+ + P+ + D +PA P PP
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765
Query: 1380 RPGQVPRGAAAS 1391
S
Sbjct: 766 PAAAPAAAPPPS 777
|
Length = 824 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-04
Identities = 53/243 (21%), Positives = 73/243 (30%), Gaps = 37/243 (15%)
Query: 1205 APASSAPGDLFGTESWVQPASVSKP-ASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPP 1263
PA + G G +V P A A ++VGA P T + A+L P
Sbjct: 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVP------AVTAVTGAAGAALAP 412
Query: 1264 PGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPV----ESIGL 1319
+ A+ AP A AP A + D +S
Sbjct: 413 KA--------AAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464
Query: 1320 PDGGVPPQSSGQTPFPYQSQVLPAQ---VPPSTQPLDLSALGV-----PNSGDSGKSPAN 1371
PP SG P A P + P + V P + +PA
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524
Query: 1372 PASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVK 1431
A P RP P AAA+ + G A AL A + ++ D A
Sbjct: 525 AAPPAPEARP---PTPAAAAPAARAGGA-------AAALDVLRNAGMRVSSDRGARAAAA 574
Query: 1432 AQA 1434
A+
Sbjct: 575 AKP 577
|
Length = 830 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 45/229 (19%), Positives = 68/229 (29%), Gaps = 26/229 (11%)
Query: 1172 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1231
P + +++ P + P GD AP S P D + P
Sbjct: 2579 EPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD---------THAPDPPPP 2629
Query: 1232 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQ---- 1287
+ S + P+ T+P + P PG G A+ +P Q
Sbjct: 2630 SPSPAANE----PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685
Query: 1288 -----ANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLP 1342
P PP P+PA P P + +P + P
Sbjct: 2686 RAARPTVGSLTSLADPP---PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742
Query: 1343 AQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAAS 1391
A P + P + +PA PA+P P ++ R A AS
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP-PRRLTRPAVAS 2790
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 51/226 (22%), Positives = 76/226 (33%), Gaps = 33/226 (14%)
Query: 1173 PPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKP-AS 1231
P + + S S + P AA P +++P + QP + P
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 1232 AGSSVGAQGQPIPEDFFQNTIPSLQ----VAASLPPPGTYLSKYDQVSQGVASGKVAPNQ 1287
S+ G P + PS AA PP L++ VS+ S + P+Q
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR-PAVSRSTESFALPPDQ 2904
Query: 1288 ANAPAADSGLPDGGVPPQIAPQ------PAIPVESIGLPDGGVPPQS--------SGQTP 1333
P P PPQ PQ P P P + P + SG P
Sbjct: 2905 PERPPQ----PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
Query: 1334 FPYQSQVLPAQVP-PSTQPLDLSALGVPNSGDSGKSPANPASPPTS 1378
P+ ++P +V P + VP S ++PA+ P T
Sbjct: 2961 QPWLGALVPGRVAVPRFR--------VPQPAPSREAPASSTPPLTG 2998
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 46/190 (24%), Positives = 65/190 (34%), Gaps = 31/190 (16%)
Query: 1205 APASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPP 1264
A +S+P + + A+ + GS + + P P P V+A+ PP
Sbjct: 2673 AAQASSP-----PQRPRRRAA---RPTVGS-LTSLADPPPPPPTPEPAPHALVSATPLPP 2723
Query: 1265 GTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIA--PQPAIPVESIGLPDG 1322
G ++ Q S + + P PA G PP A P PA P P
Sbjct: 2724 GPAAAR--QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
Query: 1323 GVPP-------QSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASP 1375
+ +S P P+ PA V L +A SPA P P
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA-----------SPAGPLPP 2830
Query: 1376 PTSVRPGQVP 1385
PTS +P P
Sbjct: 2831 PTSAQPTAPP 2840
|
Length = 3151 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 49/251 (19%), Positives = 75/251 (29%), Gaps = 28/251 (11%)
Query: 1168 GEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVS 1227
G G GP T + P +Q ++ +AA A ++AP + +
Sbjct: 369 GGGAGPA--TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR 426
Query: 1228 KPASAGSSVGAQ---GQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVA 1284
PA + Q P + AA+ P + VA+ A
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA--------AGPRPVAAAAAA 478
Query: 1285 PNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ----- 1339
APAA D PP P + PD + P P +
Sbjct: 479 APARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAF 538
Query: 1340 ----VLPAQVP---PSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVP-RGAAAS 1391
PA P + + A P + SG P ++P RG A
Sbjct: 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAA--RLPVRGLAQQ 596
Query: 1392 VCFKTGLAHLE 1402
+ ++ LA +E
Sbjct: 597 LARQSELAGVE 607
|
Length = 700 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (95), Expect = 0.004
Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 17/232 (7%)
Query: 28 AFHPNQALIAVAIGTYIIEFDTL--TGSRIASIDINS-PVVRMAYSPTSGHAVVAILEDC 84
+F P+ +L+A I L + S + ++ +S V+ +A+SP G + + D
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDG 306
Query: 85 TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144
T+R D +T + + + +S L+ +P ++ G ++ + G
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSS-----LSFSPDGSLLVSGGSDDGTIRLWDLRTG 361
Query: 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204
+ +++++ P V+ DG +R +++ T ++ L D +
Sbjct: 362 ---KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL--DGHTSRVT 416
Query: 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGM-DGSLQVWKTRVIIN 255
+ F P + L G T+ WD+ S+ DG + K+ +
Sbjct: 417 SLDF--SPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 61/215 (28%)
Query: 28 AFHPNQALIAVAI--GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCT 85
AF P+ +++ + T I +D TG + ++ GH
Sbjct: 100 AFSPDGRILSSSSRDKT-IKVWDVETGKCLTTL--------------RGH-------TDW 137
Query: 86 IRSCDFDTEQSFVLHSPEKKMESISVDTEVHL-ALTPLQPVVFFGFHRRMSVTVVGTVEG 144
+ S F + +FV S S D + L L + V H
Sbjct: 138 VNSVAFSPDGTFVASS--------SQDGTIKLWDLRTGKCVATLTGH------------- 176
Query: 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204
+ ++A P L + +DG I+ +++ T TL+ G
Sbjct: 177 -----------TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----G 221
Query: 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI 239
+ AF P L G GT+ WD+
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1605 | |||
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| PF06957 | 422 | COPI_C: Coatomer (COPI) alpha subunit C-terminus; | 100.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.91 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.9 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.89 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.88 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.88 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.88 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.87 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.86 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.86 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.86 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.85 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.84 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.84 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.84 | |
| PTZ00421 | 493 | coronin; Provisional | 99.83 | |
| PTZ00420 | 568 | coronin; Provisional | 99.82 | |
| PTZ00421 | 493 | coronin; Provisional | 99.81 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.8 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.8 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.78 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.75 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.75 | |
| PTZ00420 | 568 | coronin; Provisional | 99.74 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.73 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.73 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.72 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.71 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.71 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.7 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.7 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.7 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.68 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.67 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.66 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.66 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.66 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.62 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.62 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.62 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.62 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.62 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.62 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.6 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.59 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.59 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.57 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.57 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.57 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.56 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.53 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.53 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.51 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.5 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.5 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.48 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.46 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.46 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.46 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.45 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.45 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.45 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.45 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.44 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.44 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.43 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.43 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.42 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.42 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.42 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.41 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.4 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.4 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.38 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.38 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.37 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.36 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.35 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.35 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.34 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.34 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.34 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.33 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.33 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.33 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.32 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.32 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.29 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.29 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.27 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.25 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.24 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.23 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.23 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.23 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.22 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.22 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.2 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.19 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.18 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.17 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.16 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.16 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.15 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.14 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.14 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.13 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.11 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.1 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.07 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.07 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.06 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.05 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.04 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.04 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.04 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.04 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.04 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.03 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.02 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.02 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.01 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.01 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.0 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.98 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 98.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.96 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.96 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.96 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.95 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.95 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.94 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.93 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.9 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.88 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.85 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.83 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 98.82 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.82 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.8 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.78 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.78 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.75 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.72 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.7 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.65 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.62 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.62 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.6 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.59 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.57 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.55 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.5 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.48 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.47 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.45 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.44 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.42 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.36 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.36 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.33 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.32 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.3 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.26 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.23 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.2 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.19 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.17 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.14 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.13 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.13 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.12 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.12 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.11 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.08 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.07 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 97.97 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.95 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.89 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.88 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.86 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 97.86 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 97.84 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.83 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.76 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.75 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.73 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.71 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 97.69 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.67 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.67 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.66 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.61 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.58 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.58 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.55 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.53 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.5 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.49 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.48 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.43 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 97.42 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 97.41 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.36 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.35 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.26 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.24 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.24 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.22 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.22 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.21 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 97.2 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.14 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.14 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.1 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.06 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.98 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.95 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.86 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.62 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.49 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.45 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.44 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.44 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.4 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.34 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 95.93 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 95.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.84 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.84 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 95.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.78 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.74 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 95.7 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.68 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.68 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 95.58 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 95.55 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.53 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.42 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 95.35 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.27 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.25 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.16 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.15 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 94.95 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.71 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.7 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 94.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.46 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 94.46 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.41 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.38 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.19 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 93.97 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 93.92 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.79 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 93.73 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 93.55 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.48 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.15 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 93.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.9 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.89 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 92.88 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.83 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 92.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.63 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.38 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 92.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.19 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 92.13 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.09 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.03 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.76 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.72 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 91.25 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.16 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.12 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 91.07 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.02 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 90.73 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 90.5 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 90.33 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.23 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 90.13 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 90.08 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 89.88 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 89.78 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 89.53 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.9 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.77 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 88.77 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.4 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.31 | |
| PRK10115 | 686 | protease 2; Provisional | 88.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.1 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.09 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 87.98 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.66 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 87.43 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 87.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 87.18 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.15 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 87.02 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 86.69 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 86.21 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 85.82 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 85.39 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 85.27 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 84.8 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 84.48 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 83.78 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 83.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 83.66 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 83.61 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.5 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 83.12 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 81.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 81.07 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 81.04 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 81.04 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 81.01 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 80.54 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 80.18 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 80.13 |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-168 Score=1485.59 Aligned_cols=1096 Identities=19% Similarity=0.270 Sum_probs=915.3
Q ss_pred CCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-
Q 000378 20 KPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1605)
Q Consensus 20 ~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~- 96 (1605)
+-.+|-+++|||...|+.+ =-...|.+||-.-|..|.- .+|..||..++|.| ++-..|+|..|..||.|+..+.+-
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceeh
Confidence 3459999999999999999 4577999999999999988 99999999999999 778999999999999999998643
Q ss_pred -----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeee
Q 000378 97 -----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 97 -----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~ 164 (1605)
.+.|+|+.-.|- +|.|-|| |- || -.+++-|.++.||.- =|-|-.|
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTI-------rI--WN----wqsr~~iavltGHnH----------YVMcAqF 143 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTI-------RI--WN----WQSRKCIAVLTGHNH----------YVMCAQF 143 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeE-------EE--Ee----ccCCceEEEEecCce----------EEEeecc
Confidence 788999988765 7999999 77 77 779999999999999 9999999
Q ss_pred ecCCCeEEEEecCceEEEEecc-----------------------------cceEEEEEeeccccccccceeEeecCCce
Q 000378 165 HPRLPVLYVAYADGLIRAYNIH-----------------------------TYAVHYTLQLDNTIKLLGAGAFAFHPTLE 215 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i~-----------------------------t~~v~~tL~~~~~~~~~g~~a~Af~P~g~ 215 (1605)
||---.++|||-|-+||.|||. +..|++.|.+ |.-||...|||||+.
T Consensus 144 hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG----HDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 144 HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG----HDRGVNWAAFHPTLP 219 (1202)
T ss_pred CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc----cccccceEEecCCcc
Confidence 9999999999999999999985 4467888999 999999999999999
Q ss_pred EEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCcccccccccCCccccccceeeccCCCcceecCCccc
Q 000378 216 WLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVR 295 (1605)
Q Consensus 216 ~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~~~il~~~~g~~vyp~p~~~ 295 (1605)
.+++|++|+-+|+|.+++. .+|+. |.||= -. -++.
T Consensus 220 liVSG~DDRqVKlWrmnet-----------KaWEv------------------------Dtcrg--H~--------nnVs 254 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNET-----------KAWEV------------------------DTCRG--HY--------NNVS 254 (1202)
T ss_pred eEEecCCcceeeEEEeccc-----------cceee------------------------hhhhc--cc--------CCcc
Confidence 9999999999999999864 36753 33331 11 2456
Q ss_pred ccccccccchhhhhhhhccCCccccchhhHhHhhhhHHHHHHhhccCCchHHHHhhhccCCCcccccchHHHHHHHHHHh
Q 000378 296 ALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHL 375 (1605)
Q Consensus 296 ~~~~h~~~n~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s~~~~~~~~l~~~~s~g~~~~h~~q~~~~~~~~ 375 (1605)
.++|||+-||-- ++ ...| .|.|.-- +|.
T Consensus 255 svlfhp~q~lIl---Sn------sEDk----------sirVwDm----------~kR----------------------- 282 (1202)
T KOG0292|consen 255 SVLFHPHQDLIL---SN------SEDK----------SIRVWDM----------TKR----------------------- 282 (1202)
T ss_pred eEEecCccceeE---ec------CCCc----------cEEEEec----------ccc-----------------------
Confidence 789999988754 11 1111 1111000 000
Q ss_pred cCCcceeehhhhHHHhhhccccccccCCCCCcccceEEeecCCCCCCCCCcccccccccccccc--CCceeeeee-----
Q 000378 376 KGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNR--ENRVLHYPV----- 448 (1605)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~l~~~~~~d~~~~~~d~pv~~~~h~eln~f~~--dngvl~fp~----- 448 (1605)
.+. +.|=.+| |==-|..+||+||+|++ |+||+||++
T Consensus 283 --t~v--------~tfrren---------------------------dRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 283 --TSV--------QTFRREN---------------------------DRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred --cce--------eeeeccC---------------------------CeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 000 0011111 22234578999999999 999999999
Q ss_pred -------eEEEEeCceEEEEecccCcccceeeccccCCCCccccccccccccccceEEEEEeecCceeEEE-EEEeccCc
Q 000378 449 -------RAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVV-LYRENVDT 520 (1605)
Q Consensus 449 -------~afyi~g~nL~aynL~sG~~s~~~sL~~~i~G~~~~~pk~l~ys~~~~~fLV~~e~~g~t~elv-l~r~~~~a 520 (1605)
.+||++++.|+.|||.+..+..+.+|+. +|.+|.+|+.|+|||+++++|++...++++|||| ++.+..+.
T Consensus 326 a~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~--~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~ 403 (1202)
T KOG0292|consen 326 AYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRR--PGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGV 403 (1202)
T ss_pred eEEEcCCEEEEEccceEEeeeccccccceeEeccC--CCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCccccc
Confidence 5699999999999999999999999999 9999999999999999999999999999999999 55553443
Q ss_pred -c-ccCCCCccccCCceEEECCCCCeEEEEeCCCCeEEEEEcCCcchhhhccccCccccCCCCCCCCCCcccCCcccccc
Q 000378 521 -Q-LADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFE 598 (1605)
Q Consensus 521 -k-~~~skg~~~~G~dA~FIG~nd~qfAILd~dg~~l~Vy~l~~~~~~~~~~~~~~v~~~~~~~~~~~~s~kgP~~f~f~ 598 (1605)
+ +..-|+ .|.+|+||++| ||||||.+.+++.|++|.|+.+ ++++-|..
T Consensus 404 ~~~~~~~k~---tG~~a~fvarN--rfavl~k~~~~v~ik~l~N~vt---------------------kkl~~~~~---- 453 (1202)
T KOG0292|consen 404 SDGKDVKKG---TGEGALFVARN--RFAVLDKSNEQVVIKNLKNKVT---------------------KKLLLPES---- 453 (1202)
T ss_pred CCchhhhcC---CCCceEEEEec--ceEEEEecCcceEEecccchhh---------------------hcccCccc----
Confidence 2 344457 69999999999 9999999999999999999998 77776644
Q ss_pred cccccccccCccceeEEeccCCeEEEEeeccccccCcC-ccceeeeccCCeeeeeecCCCcEEEEEeccccCccEEEEEe
Q 000378 599 SEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSAR-AGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLT 677 (1605)
Q Consensus 599 ~~V~riFsTPl~~vL~f~~~g~~I~~sKl~~g~rlsts-~~~~i~tk~e~k~~~~L~~nE~V~qV~WQ~~~~g~vaAILT 677 (1605)
++. |||+++|+.|+.+ +++ .+||+|++ ++...++.+- |+||+|++| +..+|+|+
T Consensus 454 --~~~---------IF~ag~g~lll~~--------~~~v~lfdvQq~---~~~~si~~s~-vkyvvws~d--m~~vAll~ 508 (1202)
T KOG0292|consen 454 --TDD---------IFYAGTGNLLLRS--------PDSVTLFDVQQK---KKVGSIKVSK-VKYVVWSND--MSRVALLS 508 (1202)
T ss_pred --ccc---------eeeccCccEEEEc--------CCeEEEEEeecc---eEEEEEecCc-eeEEEEcCc--cchhhhcc
Confidence 777 9999999999998 888 99999999 9999999988 999999999 89999999
Q ss_pred cceEEEEecccchhhcccccCCCCCCCcceeeec-cceeEeechhhheeeccCCCcceEEeccCCceEEEEeecCceEEe
Q 000378 678 TQRVLIVSADLDILASSSTKFDKGLPSFRSLLWV-GPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLLLA 756 (1605)
Q Consensus 678 ~qRVlIvnanL~ii~s~~~~~~~g~~~IkS~~W~-gpaLLyST~thV~yl~wdG~~~~I~SLs~p~~~Lvg~l~DRlL~a 756 (1605)
||.|+|++++|+++|++||++ ||||..|+ .++|||+|++||||...|||.|+|+|||-| +|++ +++++++||
T Consensus 509 Kh~i~i~~kkL~l~~sihEti-----riksgawde~gVfiYtT~nHikYal~~GD~GIikTLd~~-iyit-kv~gn~V~c 581 (1202)
T KOG0292|consen 509 KHTITIADKKLELLCSIHETI-----RIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTLDKP-IYIT-KVKGNKVFC 581 (1202)
T ss_pred cceEEEEecchhheecchhee-----EeeeceeccCceEEEEehhhhhhhhccCCcceEEecccc-eEEE-EeeCCEEEE
Confidence 999999999999999999999 99999999 689999999999999999999999999999 9999 999999999
Q ss_pred cCCCCCCCCCcceEEeecccchhhhHHHHHHhhhhhhhhhccHHHHHHHHHhcccccccCHHHHHHHHcCCCCccchhhh
Q 000378 757 NPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVS 836 (1605)
Q Consensus 757 ~~~~~~Prqk~~veI~~~~vgLlEpLl~G~atl~~~~e~k~dl~~~L~~IisrfDSsrvs~~~Ld~L~k~g~~~~dLA~s 836 (1605)
++|+..|+ .++|++ +| |+||+|+|.++|++ +|+ +|+ ++.+|+|.+|+||||+| |||||+
T Consensus 582 l~rd~~~~---~~~IDp-----tE-y~FKlALi~k~yde------Vl~-lI~--ns~LvGqaiIaYLqKkg--ypeiAL- 640 (1202)
T KOG0292|consen 582 LNRDGEIE---CLTIDP-----TE-YRFKLALLNKKYDE------VLH-LIK--NSNLVGQAIIAYLQKKG--YPEIAL- 640 (1202)
T ss_pred EecCCCeE---EEeech-----HH-HHHHHHHHhhhhHH------HHH-HHH--hcCcccHHHHHHHHhcC--Ccceee-
Confidence 99999999 999999 99 99999999999999 888 999 99999999999999999 999999
Q ss_pred hhccCCcchh--hhhHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 000378 837 LSQAGPQFTQ--VLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIAD 914 (1605)
Q Consensus 837 la~~~pqf~q--~~R~~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~~ 914 (1605)
||+| .+||.+|++|||+|+|++.+|. +|+| +.|+| ||.+||++|||++||+|||++++
T Consensus 641 ------~FVkD~~tRF~LaLe~gnle~ale~akk-----ldd~------d~w~r---Lge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 641 ------HFVKDERTRFELALECGNLEVALEAAKK-----LDDK------DVWER---LGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ------eeecCcchheeeehhcCCHHHHHHHHHh-----cCcH------HHHHH---HHHHHHHhcchHHHHHHHHHhhh
Confidence 9999 9999999999999999999999 9999 99999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCHHHHHH--------HHHhhhhhcCCCchhhhHHHhhhccCCCC-CCCCCC
Q 000378 915 YESILDLFICHLNPSAMRRLAQRLEEEGANPELRRY--------CERILRVRSTGWTQGIFANFAAESMVPKG-PEWGGG 985 (1605)
Q Consensus 915 fe~ll~L~i~~gn~~aLrrma~~aE~~~~D~elr~~--------~eRil~~rs~G~~q~~~A~~~A~s~~p~G-~e~~~~ 985 (1605)
|++|+|||+|+||-|||++|++|||- |+|....++ .||+.+++..|.++ +||++|++ || .|.+
T Consensus 701 fekLsfLYliTgn~eKL~Km~~iae~-r~D~~~~~qnalYl~dv~ervkIl~n~g~~~--laylta~~---~G~~~~a-- 772 (1202)
T KOG0292|consen 701 FEKLSFLYLITGNLEKLSKMMKIAEI-RNDATGQFQNALYLGDVKERVKILENGGQLP--LAYLTAAA---HGLEDQA-- 772 (1202)
T ss_pred hhheeEEEEEeCCHHHHHHHHHHHHh-hhhhHHHHHHHHHhccHHHHHHHHHhcCccc--HHHHHHhh---cCcHHHH--
Confidence 99999999999999999999999997 999999998 89999999999999 99999999 99 7777
Q ss_pred cceeecCCCCCCcccccccccccccccCCCCCCCceeecccceeccccccccceeEEehhhhccccccCCCCCCCCCCCC
Q 000378 986 NWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHS 1065 (1605)
Q Consensus 986 ~~~I~~~~~~~~~~q~~~~~e~~p~m~~~~~~~p~i~~~~~~~y~g~~~~r~~~~ev~e~~l~~~~~~~~~~~~~~~~~~ 1065 (1605)
.++++..+. ..+.+ +|++|.-.. +.||++|.+. ++||..-++.++||++|+..-...+-++++.+
T Consensus 773 -e~l~ee~~~-~~~~l---P~~~~~a~l-l~pP~p~~~l------~nwPLl~~s~~~fe~~~~~~~~~~av~~~~e~--- 837 (1202)
T KOG0292|consen 773 -EKLGEELEK-QVPSL---PEVDPNASL-LQPPVPIMPL------ENWPLLSVSKGTFEGALLSRSSSLAVDRDDEG--- 837 (1202)
T ss_pred -HHHHHhhcc-ccCCC---CCCCCcccc-cCCCCccccc------cCCchhhhhhhhhhHhhhhhcccCcccccccc---
Confidence 788877765 22222 333444322 4445555444 78999999999999999876421111111111
Q ss_pred CcccccccCCCCCCCCCcccccccchhhhhhccCCCchhHHHHHHHHHHHhhhccccCCCCCCcccccccccceeeeccc
Q 000378 1066 SSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRD 1145 (1605)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~a~a~~~~~~~~y~~~~~~~s~eeE~~~~~~k~~i~i~~ 1145 (1605)
+.|+...| ++....|-. .+ .+|+..+.+||+..|| ++++.+
T Consensus 838 -------------~~g~e~~~--------------------~e~~l~ed~-~~---~~d~~g~~~~dE~~gW--dv~d~~ 878 (1202)
T KOG0292|consen 838 -------------DWGEEGWD--------------------VELMLGEDG-IL---FNDGAGEVGEDEGGGW--DVGDLD 878 (1202)
T ss_pred -------------cccccchh--------------------hhhcccccc-cc---ccccccccCcccccCc--Cccccc
Confidence 01110000 000000100 01 1222223333334479 777766
Q ss_pred ccccc---cccchhhHHHHhhhccccCCCCCCc-cccc------CCCCccccccccCCCCCCCCCCCCcCCCCCCCCCcc
Q 000378 1146 KPIAS---SAVDVNKIKEATKQFKLGEGLGPPM-RTKS------LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLF 1215 (1605)
Q Consensus 1146 ~~~~~---~~vdv~~~~~a~~~~~~~~~~~p~~-~~~s------~~~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1605)
.|... ..+|.+.+. --..|..|.. .+|| +++|+||+|
T Consensus 879 l~pe~~~~~~~~~~~~~------~p~~~~~~~~W~~nS~L~adhvaAGsf~tA--------------------------- 925 (1202)
T KOG0292|consen 879 LPPEEDTPKGADDGEFV------VPAQGMSVSIWSNNSPLAADHVAAGSFETA--------------------------- 925 (1202)
T ss_pred CCcccccccccccccee------cCCCCCcchhccccCcchhhhhhcCchHHH---------------------------
Confidence 63222 223333322 0001111111 4666 899999999
Q ss_pred CccccccCCCCCCCCCCCccccccCCCCCccccccCCccccccccCCCCcccccccccccccccCCCcCCCCCCCCCCcC
Q 000378 1216 GTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADS 1295 (1605)
Q Consensus 1216 ~~~~l~~~~~~~~~~~~~~~~g~~~~pipedff~~t~~~~~~~~~~p~~~~~l~~~~q~~~g~~~~~~~~n~~~~~~~~~ 1295 (1605)
|++|.+| +|+ .+|.|++-.|+.+|. . +++
T Consensus 926 -~~lL~dq------------vgv-------------------v~f~p~Kt~fl~iy~------------~-------sR~ 954 (1202)
T KOG0292|consen 926 -MRLLHDQ------------VGV-------------------VNFGPLKTHFLKIYA------------G-------SRT 954 (1202)
T ss_pred -HHHHHhh------------hcc-------------------eecccHHhhhhhhcc------------c-------cce
Confidence 9999999 899 999999999999998 5 888
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCC
Q 000378 1296 GLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASP 1375 (1605)
Q Consensus 1296 ~lp~ggvppq~~~qp~~~~~~igLpdgGvppq~~~~~~~p~q~~~~~~~~~~~~~Pl~l~v~~~p~~~~s~~~p~~~~s~ 1375 (1605)
++| +.++.+ +.++..|+..+. .
T Consensus 955 ~l~----------------------------------------------~~~~~~-~~~~~~R~~se~-----------~ 976 (1202)
T KOG0292|consen 955 YLR----------------------------------------------ATPCLP-VSLYPVRNWSET-----------S 976 (1202)
T ss_pred ecc----------------------------------------------CCCCcc-cccccccccccc-----------h
Confidence 988 333444 334444454552 1
Q ss_pred CCCCCCCCCCCCchh-HHHHHHHHHHHhcCChHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHHHHHHchHHHH
Q 000378 1376 PTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLLQEI 1450 (1605)
Q Consensus 1376 p~~v~p~~vPr~l~~-~~~LK~Gyk~~t~GKF~EAl~~Fr~IL~----~vV~s~~E~~EvkelI~iCREYilALsLL~EL 1450 (1605)
..+.+| .++..++. ..+|++||+++|.|||.||+++||+||+ .+|++++|++|++++|+||||||+||+| |+
T Consensus 977 ~~~~~P-~v~~~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~--E~ 1053 (1202)
T KOG0292|consen 977 SKQGLP-AVGFKLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSV--EL 1053 (1202)
T ss_pred hhccCC-cccccHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhhee--ee
Confidence 234446 88898886 6699999999999999999999999999 8899999999999999999999999999 99
Q ss_pred HHhhccCCCCccccchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC-chHHHHHHHHH
Q 000378 1451 LRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLI 1529 (1605)
Q Consensus 1451 eRr~~L~~~~d~~kn~~R~LELAAYFThc~LQp~HriLaLRsAM~~a~K~KNY~TAAsFArRLLel~p-~~~aeqARKIL 1529 (1605)
+||+ ++++ ++.|+||||||||||+|||.|++||||+||+.+||+|||+||++||+|||+++| +++++|+||++
T Consensus 1054 ~Rr~-l~~~-----~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~ 1127 (1202)
T KOG0292|consen 1054 ERRK-LKKP-----NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIK 1127 (1202)
T ss_pred eecc-cCCc-----hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 9999 7322 456999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHhcCCCCcccC--CCCCCceeecccceeccC-CCccccCCCCceecCCC-CCCCccccceeecCCCCCC
Q 000378 1530 DMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLCGAKFSALS-APGCIICGMGSIKRSDALA 1597 (1605)
Q Consensus 1530 ~~CEqnptDaveId--~~enpF~ICaaSltPIY~-~p~V~CPyCGAkY~p~y-G~lC~VC~L~eIG~~~~~~ 1597 (1605)
++||+||+|+++|+ ++ |||+||++||+|||+ .|.++||||||+|++.+ |.+|+||++++||+ |+.+
T Consensus 1128 ~a~eknp~Da~~l~yd~~-n~f~iC~~t~~Piy~g~p~~~cp~cga~y~~~~~g~iCtvc~V~~ig~-~~~G 1197 (1202)
T KOG0292|consen 1128 QAAEKNPTDAYELNYDPH-NPFVICGATYVPIYRGRPDVSCPYCGACFVPSSKGNICTVCDVGVIGA-DASG 1197 (1202)
T ss_pred HHhhcCcccccccCcccC-CCeeEecccceeeecCCCCcCCCcccceeccccCCceeeeeeeeeecC-cccc
Confidence 99999999999999 88 999999999999999 99999999999999999 99999999999999 5543
|
|
| >PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-76 Score=686.40 Aligned_cols=277 Identities=21% Similarity=0.367 Sum_probs=225.5
Q ss_pred cccc------CCCCccccccccCCCCCCCCCCCCcCCCCCCCCCccCccccccCCCCCCCCCCCccccccCCCCCccccc
Q 000378 1176 RTKS------LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQ 1249 (1605)
Q Consensus 1176 ~~~s------~~~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~pipedff~ 1249 (1605)
.+|| +++|+||+| |++|||| +|+
T Consensus 119 ~~nS~laadhvAAGsFetA----------------------------m~LLnrQ------------iGi----------- 147 (422)
T PF06957_consen 119 VRNSSLAADHVAAGSFETA----------------------------MQLLNRQ------------IGI----------- 147 (422)
T ss_dssp HHH--SHHHHHHCT-HHHH----------------------------HHHHHHH------------C-B-----------
T ss_pred HHcCCcHHHHHHhCCHHHH----------------------------HHHHHHH------------hCc-----------
Confidence 4666 899999999 9999999 899
Q ss_pred cCCccccccccCCCCcccccccccccccccCCCcCCCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCC
Q 000378 1250 NTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSS 1329 (1605)
Q Consensus 1250 ~t~~~~~~~~~~p~~~~~l~~~~q~~~g~~~~~~~~n~~~~~~~~~~lp~ggvppq~~~qp~~~~~~igLpdgGvppq~~ 1329 (1605)
+||.|++..|+++|. + ++++||
T Consensus 148 --------vnF~PLk~~Fl~~y~------------~-------s~~~l~------------------------------- 169 (422)
T PF06957_consen 148 --------VNFEPLKPLFLEVYQ------------A-------SRTYLP------------------------------- 169 (422)
T ss_dssp -----------GGGHHHHHHHHC------------C-------TEEEE--------------------------------
T ss_pred --------cccHHHHHHHHHHHH------------h-------hceecc-------------------------------
Confidence 999999999999998 6 899998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchh-HHHHHHHHHHHhcCChHH
Q 000378 1330 GQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPD 1408 (1605)
Q Consensus 1330 ~~~~~p~q~~~~~~~~~~~~~Pl~l~v~~~p~~~~s~~~p~~~~s~p~~v~p~~vPr~l~~-~~~LK~Gyk~~t~GKF~E 1408 (1605)
+.+++|||.++++|++++ +.++..+| .++++++. .++||.|||+||+|||+|
T Consensus 170 ---------------~~~~~p~l~~~~~r~~~~-----------~~~~~~lP-~i~~~l~~L~~~Lk~gyk~~t~gKF~e 222 (422)
T PF06957_consen 170 ---------------ALPSLPPLPSYIRRNWDE-----------SNPKNGLP-AIPLSLSSLEERLKEGYKLFTAGKFEE 222 (422)
T ss_dssp ---------------SSTTTS-EEEEEBCTTTT-----------SSSCCG-B-B----HHHHHHHHHHHHHHHHTT-HHH
T ss_pred ---------------cCCCCCCccccccCCccc-----------cccccCCC-cCcCCHHHHHHHHHHHHHHHhcCCHHH
Confidence 667889999999999998 44555677 78888886 779999999999999999
Q ss_pred HHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHHHHHHchHHHHHHhhccCCCCccccchHHHHHHHHHhcCCCCchh
Q 000378 1409 ALSCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTK 1484 (1605)
Q Consensus 1409 Al~~Fr~IL~----~vV~s~~E~~EvkelI~iCREYilALsLL~ELeRr~~L~~~~d~~kn~~R~LELAAYFThc~LQp~ 1484 (1605)
|+..||+||| ++|++++|++|++++|.||||||+||+| |++||+ +++. + +.++||+||||||||||+|||.
T Consensus 223 A~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~i--El~Rr~-l~~~-~-~~~~kR~lELAAYFThc~LQp~ 297 (422)
T PF06957_consen 223 AIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSI--ELERRE-LPKD-P-VEDQKRNLELAAYFTHCKLQPS 297 (422)
T ss_dssp HHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHH--HHHHCT-S-TT-T-HHHHHHHHHHHHHHCCS---HH
T ss_pred HHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh-cccc-c-hhhHHHHHHHHHHHhcCCCcHH
Confidence 9999999999 8899999999999999999999999999 999999 7433 2 3567799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHhcCCCCcccC--CCCCCceeecccceeccC
Q 000378 1485 HRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST 1561 (1605)
Q Consensus 1485 HriLaLRsAM~~a~K~KNY~TAAsFArRLLel~p-~~~aeqARKIL~~CEqnptDaveId--~~enpF~ICaaSltPIY~ 1561 (1605)
|++|+||+||+++||+|||+||++||||||+++| +++++|||||+++|||+++|+++|| ++ |||+||++||||||+
T Consensus 298 H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa~~i~yD~~-npF~ICa~s~tPIY~ 376 (422)
T PF06957_consen 298 HLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNPTDAHEIDYDER-NPFDICAASYTPIYR 376 (422)
T ss_dssp HHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BSS--S--TT-S-EEEBTTT--EEET
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCceecCCCCC-CCceeeecccccccC
Confidence 9999999999999999999999999999999999 9999999999999999999999999 88 999999999999999
Q ss_pred -CCccccCCCCceecCCC-CCCCccccceeecCCCC
Q 000378 1562 -IGYDVCDLCGAKFSALS-APGCIICGMGSIKRSDA 1595 (1605)
Q Consensus 1562 -~p~V~CPyCGAkY~p~y-G~lC~VC~L~eIG~~~~ 1595 (1605)
+++|+||||||+|+++| |++|+||+||+||+ |+
T Consensus 377 G~~~v~CP~cgA~y~~~~kG~lC~vC~l~~IG~-~a 411 (422)
T PF06957_consen 377 GSPSVKCPYCGAKYHPEYKGQLCPVCELSEIGA-DA 411 (422)
T ss_dssp TS-EEE-TTT--EEEGGGTTSB-TTTTTBBTT----
T ss_pred CCCCeeCCCCCCccChhhCCCCCCCCcceeeCC-cc
Confidence 99999999999999999 99999999999999 55
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-50 Score=468.78 Aligned_cols=405 Identities=20% Similarity=0.284 Sum_probs=298.9
Q ss_pred ceEEEEecccC-----cccceeeccccCCCCccccccccccccccceEEEEEeecCceeEEEEEEeccCccccCCCCccc
Q 000378 456 INLVAYNLCSG-----ADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTV 530 (1605)
Q Consensus 456 ~nL~aynL~sG-----~~s~~~sL~~~i~G~~~~~pk~l~ys~~~~~fLV~~e~~g~t~elvl~r~~~~ak~~~skg~~~ 530 (1605)
..|+.||+..+ -+....+++. .|+.+..|++|+|||+.+.++| ++++.|+++ .. .+. .....|
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~--lg~~~~~p~~ls~npngr~v~V---~g~geY~iy--t~-~~~-r~k~~G--- 69 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKE--LGSCEIYPQSLSHNPNGRFVLV---CGDGEYEIY--TA-LAW-RNKAFG--- 69 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EE--EEE-SS--SEEEE-TTSSEEEE---EETTEEEEE--ET-TTT-EEEEEE---
T ss_pred CceEEEECcCCCccCCCceeeEEecc--CCCCCcCCeeEEECCCCCEEEE---EcCCEEEEE--Ec-cCC-cccccC---
Confidence 46888999988 4445566666 7899999999999999998888 456655554 31 111 112236
Q ss_pred cCCceEEECCCCCeEEEEeCCCCeEEE-EEcCCcchhhhccccCccccCCCCCCCCCCcccCCcccccccccccccccCc
Q 000378 531 KGRDAAFIGPNEDQFAILDDDKTGLAL-YILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPI 609 (1605)
Q Consensus 531 ~G~dA~FIG~nd~qfAILd~dg~~l~V-y~l~~~~~~~~~~~~~~v~~~~~~~~~~~~s~kgP~~f~f~~~V~riFsTPl 609 (1605)
+|.++||+++| +|||++++ ..+.| +++.++.+ ++++.|.. +++||+
T Consensus 70 ~g~~~vw~~~n--~yAv~~~~-~~I~I~kn~~~~~~---------------------k~i~~~~~------~~~If~--- 116 (443)
T PF04053_consen 70 SGLSFVWSSRN--RYAVLESS-STIKIYKNFKNEVV---------------------KSIKLPFS------VEKIFG--- 116 (443)
T ss_dssp E-SEEEE-TSS--EEEEE-TT-S-EEEEETTEE-TT--------------------------SS-------EEEEE----
T ss_pred ceeEEEEecCc--cEEEEECC-CeEEEEEcCccccc---------------------eEEcCCcc------cceEEc---
Confidence 79999999988 89999996 55888 67776655 77887755 899776
Q ss_pred cceeEEeccCCeEEEEeeccccccCcCccceeeeccCCeeeeeecCCCcEEEEEeccccCccEEEEEecceEEEEecccc
Q 000378 610 ESTLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLD 689 (1605)
Q Consensus 610 ~~vL~f~~~g~~I~~sKl~~g~rlsts~~~~i~tk~e~k~~~~L~~nE~V~qV~WQ~~~~g~vaAILT~qRVlIvnanL~ 689 (1605)
|.|+.....+.| ..||++++ +..-++..+. |++|.|+++ |.++||+|++.++|.+.+++
T Consensus 117 -G~LL~~~~~~~i--------------~~yDw~~~---~~i~~i~v~~-vk~V~Ws~~--g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 117 -GNLLGVKSSDFI--------------CFYDWETG---KLIRRIDVSA-VKYVIWSDD--GELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -SSSEEEEETTEE--------------EEE-TTT-----EEEEESS-E--EEEEE-TT--SSEEEEE-S-SEEEEEE-HH
T ss_pred -CcEEEEECCCCE--------------EEEEhhHc---ceeeEEecCC-CcEEEEECC--CCEEEEEeCCeEEEEEecch
Confidence 323333222333 34778877 8888888877 999999999 99999999999999999999
Q ss_pred ------------hhhcccc-cCCCCCCCcceeeeccceeEeechhhheeeccCCCcceEEeccCCceEEEEeec-CceEE
Q 000378 690 ------------ILASSST-KFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALN-DRLLL 755 (1605)
Q Consensus 690 ------------ii~s~~~-~~~~g~~~IkS~~W~gpaLLyST~thV~yl~wdG~~~~I~SLs~p~~~Lvg~l~-DRlL~ 755 (1605)
.++.+|| .. +|+|++|++-++||||.+||+| +.+|++++|++|+.| .||+|.++ +..+|
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~-----~IkSg~W~~d~fiYtT~~~lkY-l~~Ge~~~i~~ld~~-~yllgy~~~~~~ly 248 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISE-----RIKSGCWVEDCFIYTTSNHLKY-LVNGETGIIAHLDKP-LYLLGYLPKENRLY 248 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S-------SEEEEETTEEEEE-TTEEEE-EETTEEEEEEE-SS---EEEEEETTTTEEE
T ss_pred hcccccccCchhceEEEEEecc-----eeEEEEEEcCEEEEEcCCeEEE-EEcCCcceEEEcCCc-eEEEEEEccCCEEE
Confidence 9999999 77 9999999988999999999999 999999999999998 99999998 34567
Q ss_pred ecCCCCCCCCCcceEEeecccchhhhHHHHHHhhhhhhhhhccHHHHHHHHHhccccccc-------CHHHHHHHHcCCC
Q 000378 756 ANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRI-------TPRSLDILAKGPP 828 (1605)
Q Consensus 756 a~~~~~~Prqk~~veI~~~~vgLlEpLl~G~atl~~~~e~k~dl~~~L~~IisrfDSsrv-------s~~~Ld~L~k~g~ 828 (1605)
+.+++.++. ..+|+. .| |.|+.|.+++.|+. +++ +++ .+..+ +++++.+|+++|
T Consensus 249 ~~Dr~~~v~---~~~ld~-----~~-~~fk~av~~~d~~~------v~~-~i~--~~~ll~~i~~~~~~~i~~fL~~~G- 309 (443)
T PF04053_consen 249 LIDRDGNVI---SYELDL-----SE-LEFKTAVLRGDFEE------VLR-MIA--ASNLLPNIPKDQGQSIARFLEKKG- 309 (443)
T ss_dssp EE-TT--EE---EEE--H-----HH-HHHHHHHHTT-HHH------------H--HHHTGGG--HHHHHHHHHHHHHTT-
T ss_pred EEECCCCEE---EEEECH-----HH-HHHHHHHHcCChhh------hhh-hhh--hhhhcccCChhHHHHHHHHHHHCC-
Confidence 778888877 666766 99 99999999999999 666 666 67778 999999999999
Q ss_pred CccchhhhhhccCCcchh--hhhHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHH
Q 000378 829 VCGDLAVSLSQAGPQFTQ--VLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAK 906 (1605)
Q Consensus 829 ~~~dLA~sla~~~pqf~q--~~R~~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ak 906 (1605)
|+|+|+ +|++ ..||++|+++||+++|++++++ ++.| +.|.+ ||.+||++|++++|+
T Consensus 310 -~~e~AL-------~~~~D~~~rFeLAl~lg~L~~A~~~a~~-----~~~~------~~W~~---Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 310 -YPELAL-------QFVTDPDHRFELALQLGNLDIALEIAKE-----LDDP------EKWKQ---LGDEALRQGNIELAE 367 (443)
T ss_dssp --HHHHH-------HHSS-HHHHHHHHHHCT-HHHHHHHCCC-----CSTH------HHHHH---HHHHHHHTTBHHHHH
T ss_pred -CHHHHH-------hhcCChHHHhHHHHhcCCHHHHHHHHHh-----cCcH------HHHHH---HHHHHHHcCCHHHHH
Confidence 999999 8888 9999999999999999999988 8888 89999 999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCHHHHHH--------HHHhhhhhcCCCchhhhHHHhhhccCCC
Q 000378 907 ETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRY--------CERILRVRSTGWTQGIFANFAAESMVPK 978 (1605)
Q Consensus 907 e~fq~~~~fe~ll~L~i~~gn~~aLrrma~~aE~~~~D~elr~~--------~eRil~~rs~G~~q~~~A~~~A~s~~p~ 978 (1605)
+|||+++||++|++||.++||.++|++|++++++ ++|..++|+ .+||..+.++|.+| +|+|+|++ +
T Consensus 368 ~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~-~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~--~A~~~A~t---y 441 (443)
T PF04053_consen 368 ECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEE-RGDINIAFQAALLLGDVEECVDLLIETGRLP--EAALFART---Y 441 (443)
T ss_dssp HHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHT-HHHHHHHHHHTT-HH--HHHHHHHH---T
T ss_pred HHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHH-ccCHHHHHHHHHHcCCHHHHHHHHHHcCCch--HHHHHHHh---c
Confidence 9999999999999999999999999999999997 999999998 78999999999999 99999999 6
Q ss_pred CC
Q 000378 979 GP 980 (1605)
Q Consensus 979 G~ 980 (1605)
||
T Consensus 442 ~~ 443 (443)
T PF04053_consen 442 GP 443 (443)
T ss_dssp T-
T ss_pred CC
Confidence 64
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=333.68 Aligned_cols=679 Identities=20% Similarity=0.251 Sum_probs=474.9
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEE
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|+..+-..++.+.-. -.+|+++.|=+--.|+.+ |.|-.|++|+-.|+.|+-. -.|++.+.+||-.||.- .+.+.
T Consensus 40 WnyetqtmVksfeV~---~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P-~vLts 115 (794)
T KOG0276|consen 40 WNYETQTMVKSFEVS---EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP-YVLTS 115 (794)
T ss_pred Eecccceeeeeeeec---ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCC-eEEec
Confidence 666665677777322 358999999999999999 9999999999999999999 89999999999999766 78899
Q ss_pred ecCCcEEeeccCCC----ce---------EEEeCCCc-cccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 81 LEDCTIRSCDFDTE----QS---------FVLHSPEK-KMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~----q~---------~v~~sp~~-~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
+.|.+||+||-+.+ |+ +|+|+|.. .+.+ .|=|+|| |- |. .-+..+.-|++||
T Consensus 116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV-------KV--Ws----lgs~~~nfTl~gH 182 (794)
T KOG0276|consen 116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV-------KV--WS----LGSPHPNFTLEGH 182 (794)
T ss_pred CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE-------EE--EE----cCCCCCceeeecc
Confidence 99999999999885 44 89999855 3444 6889999 65 99 8888888899999
Q ss_pred CCCcccccccCCCceEeeee--cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCC
Q 000378 146 RAPTKIKTDLKKPIVNLACH--PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~--P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~d 223 (1605)
.- .|.++-+- +|-|.|.+|++|.+|++||.||-+-.-||.+ |..-|.++-|||.+-++.+||.|
T Consensus 183 ek----------GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG----Ht~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 183 EK----------GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG----HTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred cc----------CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc----ccccceEEEecCCCcEEEEecCC
Confidence 88 99999998 5669999999999999999999998889999 99999999999999999999999
Q ss_pred CeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCcccccccccCCccccccceeeccCCCcceecCCccccccccccc
Q 000378 224 GTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRL 303 (1605)
Q Consensus 224 gtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~~~il~~~~g~~vyp~p~~~~~~~h~~~ 303 (1605)
||++||--.|-|---.=.-|.=.||-. --|++.
T Consensus 249 GTvriWhs~Ty~lE~tLn~gleRvW~I-----------------------------------------------~~~k~~ 281 (794)
T KOG0276|consen 249 GTVRIWNSKTYKLEKTLNYGLERVWCI-----------------------------------------------AAHKGD 281 (794)
T ss_pred ccEEEecCcceehhhhhhcCCceEEEE-----------------------------------------------eecCCC
Confidence 999999887533110000122233432 222222
Q ss_pred chhhhhhhhccCCccccchhhHhHhhhhHHHHHHhhccCCchHHHHhhhccCCCcc-cccchHHHHHHHHHHhcCCccee
Q 000378 304 NLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSG-ILADHQLQAQLQEHHLKGHSHLT 382 (1605)
Q Consensus 304 n~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s~~~~~~~~l~~~~s~g-~~~~h~~q~~~~~~~~~~~~~~~ 382 (1605)
|.-++=|-. |-. .+...|+ |-+-+|-++| |+=. +|+.+.
T Consensus 282 ~~i~vG~De----------------g~i-~v~lgre----------eP~vsMd~~gKIiwa-------------~~~ei~ 321 (794)
T KOG0276|consen 282 GKIAVGFDE----------------GSV-TVKLGRE----------EPAVSMDSNGKIIWA-------------VHSEIQ 321 (794)
T ss_pred CeEEEeccC----------------CcE-EEEccCC----------CCceeecCCccEEEE-------------cCceee
Confidence 221100000 000 0001111 1122333333 2100 111110
Q ss_pred ehhhhHHHhhhccccccccCCCCCcccceEEeecCCCCCCCCCccccccccccccccCCceeeeeeeEEEEeCceEEEEe
Q 000378 383 ISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYN 462 (1605)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~~~~p~~~l~~~~~~d~~~~~~d~pv~~~~h~eln~f~~dngvl~fp~~afyi~g~nL~ayn 462 (1605)
- .-+-+|.+.+ +
T Consensus 322 ~-------------------------~~~ks~~~~~-------------------------------------------e 333 (794)
T KOG0276|consen 322 A-------------------------VNLKSVGAQK-------------------------------------------E 333 (794)
T ss_pred e-------------------------eeceeccCcc-------------------------------------------c
Confidence 0 0011111110 1
Q ss_pred cccCcccceeeccccCCCCccccccccccccccceEEEEEeecCceeEEEEEEeccCccccCCCCccccCCceEEECCCC
Q 000378 463 LCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNE 542 (1605)
Q Consensus 463 L~sG~~s~~~sL~~~i~G~~~~~pk~l~ys~~~~~fLV~~e~~g~t~elvl~r~~~~ak~~~skg~~~~G~dA~FIG~nd 542 (1605)
..-| +..=.+++. .|+.+..|.+|-+||+-|++.|+ +-+|.++|-. +.- -...-| +|.+=+|....
T Consensus 334 v~Dg-ErL~LsvKe--Lgs~eiyPq~L~hsPNGrfV~Vc-----gdGEyiIyTa-la~-RnK~fG---~~~eFvw~~ds- 399 (794)
T KOG0276|consen 334 VTDG-ERLPLSVKE--LGSVEIYPQTLAHSPNGRFVVVC-----GDGEYIIYTA-LAL-RNKAFG---SGLEFVWAADS- 399 (794)
T ss_pred ccCC-ccccchhhh--ccccccchHHhccCCCCcEEEEe-----cCccEEEEEe-eeh-hhcccc---cceeEEEcCCC-
Confidence 1111 222233444 89999999999999999977665 3457777753 211 111226 68898888872
Q ss_pred CeEEEEeCCCCeEEEEEcCCcchhhhccccCccccCCCCCCCCCCcccCCcccccccccccccccCccceeEEeccCCeE
Q 000378 543 DQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQI 622 (1605)
Q Consensus 543 ~qfAILd~dg~~l~Vy~l~~~~~~~~~~~~~~v~~~~~~~~~~~~s~kgP~~f~f~~~V~riFsTPl~~vL~f~~~g~~I 622 (1605)
|-|||-+.+++..-.+++... ++++.++- .++|||-| |+=....+.|
T Consensus 400 ne~avRes~~~vki~knfke~-----------------------ksi~~~~~------~e~i~gg~----Llg~~ss~~~ 446 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIFKNFKEH-----------------------KSIRPDMS------AEGIFGGP----LLGVRSSDFL 446 (794)
T ss_pred CeEEEEecCCceEEEecceec-----------------------cccccccc------eeeecCCc----eEEEEeCCeE
Confidence 379999999884333333322 78887755 88999844 4444555566
Q ss_pred EEEeeccccccCcCccceeeeccCCeeeeeecCCCcEEEEEeccccCccEEEEEecceEEEEecccchhhcccc----cC
Q 000378 623 GMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSST----KF 698 (1605)
Q Consensus 623 ~~sKl~~g~rlsts~~~~i~tk~e~k~~~~L~~nE~V~qV~WQ~~~~g~vaAILT~qRVlIvnanL~ii~s~~~----~~ 698 (1605)
||= |-... +--+.|+. .++.|.|+.+ |..++|.+.-...|.-=|=+++.+-.+ -.
T Consensus 447 ~fy--------------dW~~~-~lVrrI~v----~~k~v~w~d~--g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~ 505 (794)
T KOG0276|consen 447 CFY--------------DWESG-ELVRRIEV----TSKHVYWSDN--GELVAIAGDDSFYILKFNADAVANAVEQGIEVT 505 (794)
T ss_pred EEE--------------Ecccc-eEEEEEee----ccceeEEecC--CCEEEEEecCceeEEEecHHHHHHHHhcCCCCc
Confidence 662 21111 11222322 2678999999 999999999996665444444444333 22
Q ss_pred CCC-----------CCCcceeeeccceeEeechhhheeeccCCCcceEEeccCCceEEEEe-ecCceEEecCCCCCCCCC
Q 000378 699 DKG-----------LPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGA-LNDRLLLANPTEINPRQK 766 (1605)
Q Consensus 699 ~~g-----------~~~IkS~~W~gpaLLyST~thV~yl~wdG~~~~I~SLs~p~~~Lvg~-l~DRlL~a~~~~~~Prqk 766 (1605)
+.| ..+++...|+|=.+||+|++.=-+-+.-|++-.|.-++.+ .||.|- -+|..+|..+++-+.
T Consensus 506 eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~-mylLgy~~~~~rvYL~Dke~nV--- 581 (794)
T KOG0276|consen 506 EEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRI-MYLLGYVANDNRVYLHDKELNV--- 581 (794)
T ss_pred chhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccc-hhheeeeecCCEEEEeecccce---
Confidence 222 3678999999999999999977777788999999999988 666654 467777776654433
Q ss_pred cceEEeecccchhhhHHHHHHhhhhhhhhhccHHHHHHHHHhcccccccCHHHHHHHHcCCCCccchhhhhhccCCcchh
Q 000378 767 KGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQ 846 (1605)
Q Consensus 767 ~~veI~~~~vgLlEpLl~G~atl~~~~e~k~dl~~~L~~IisrfDSsrvs~~~Ld~L~k~g~~~~dLA~sla~~~pqf~q 846 (1605)
.-.+-+. |-|.+.-+.|.+-||.. .++|.+|=. -.-.++...|-+.| +.|-|+.++.. +
T Consensus 582 ---i~y~l~l---~vleyqt~vmrrd~~~a---~~vLp~I~k-----~~rt~va~Fle~~g--~~e~AL~~s~D-----~ 640 (794)
T KOG0276|consen 582 ---ISYKILL---EVLEYQTLVLRRDLEVA---DGVLPTIPK-----EIRTKVAHFLESQG--MKEQALELSTD-----P 640 (794)
T ss_pred ---EeEeeeh---HHHHHHHHhhhcccccc---ccccccCch-----hhhhhHHhHhhhcc--chHhhhhcCCC-----h
Confidence 2233334 44446688899888872 125554443 23356777888877 99988866543 3
Q ss_pred hhhHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhHHHHHHHHHHcC
Q 000378 847 VLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHL 926 (1605)
Q Consensus 847 ~~R~~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~~fe~ll~L~i~~g 926 (1605)
.-||++|++-|+++.|.+++.+ .+.+ .=|. +||++|++.|++..|+|||++..||..|+-||-+.|
T Consensus 641 d~rFelal~lgrl~iA~~la~e-----~~s~------~Kw~---~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g 706 (794)
T KOG0276|consen 641 DQRFELALKLGRLDIAFDLAVE-----ANSE------VKWR---QLGDAALSAGELPLASECFLRARDLGSLLLLYTSSG 706 (794)
T ss_pred hhhhhhhhhcCcHHHHHHHHHh-----hcch------HHHH---HHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcC
Confidence 5699999999999999999988 5555 3344 599999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHH--------HHHhhhhhcCCCchhhhHHHhhhccCC
Q 000378 927 NPSAMRRLAQRLEEEGANPELRRY--------CERILRVRSTGWTQGIFANFAAESMVP 977 (1605)
Q Consensus 927 n~~aLrrma~~aE~~~~D~elr~~--------~eRil~~rs~G~~q~~~A~~~A~s~~p 977 (1605)
|.+.|..+++.+++++ -.-+.|. .+=...+-+++-+| +|.|.|++..|
T Consensus 707 ~~~~l~~la~~~~~~g-~~N~AF~~~~l~g~~~~C~~lLi~t~r~p--eAal~ArtYlp 762 (794)
T KOG0276|consen 707 NAEGLAVLASLAKKQG-KNNLAFLAYFLSGDYEECLELLISTQRLP--EAALFARTYLP 762 (794)
T ss_pred ChhHHHHHHHHHHhhc-ccchHHHHHHHcCCHHHHHHHHHhcCcCc--HHHHHHhhhCh
Confidence 9999999999988754 3344554 33344668899999 99999999555
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-25 Score=265.87 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=184.2
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEE
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~ 87 (1605)
.+.+ ||++ +|-+..|+|+-++|.+ |-|++|+||...|-+-+.+ -+|-.||+-+.||| .|+..|++++|+|-|
T Consensus 444 ~~~L~GH~G----PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 444 SRTLYGHSG----PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTAR 518 (707)
T ss_pred eEEeecCCC----ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceee
Confidence 3445 9999 9999999999999999 9999999999999999888 99999999999999 999999999999999
Q ss_pred eeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccc
Q 000378 88 SCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1605)
Q Consensus 88 ~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d 154 (1605)
+|..+.-++ ||.|+|..-+++ +|+|.|| |+ |. ..++..|-.|.||+.
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tV-------Rl--WD----v~~G~~VRiF~GH~~------- 578 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTV-------RL--WD----VSTGNSVRIFTGHKG------- 578 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceE-------EE--EE----cCCCcEEEEecCCCC-------
Confidence 999998555 999999999999 5999999 99 99 999999999999999
Q ss_pred cCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 155 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 155 ~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
||.+|||||+|.+|++|++||+|.+||+.+|..+-++.+ |.+-+.++-|+.||.+||||+.|.++.+||+...
T Consensus 579 ---~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~----Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 579 ---PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG----HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc----ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999754
Q ss_pred CCe
Q 000378 235 RPS 237 (1605)
Q Consensus 235 ~~~ 237 (1605)
+-.
T Consensus 652 ~~~ 654 (707)
T KOG0263|consen 652 IEL 654 (707)
T ss_pred ccc
Confidence 433
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=244.09 Aligned_cols=228 Identities=18% Similarity=0.235 Sum_probs=197.0
Q ss_pred CCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCC-CCceEEEEecCCcEEeeccC
Q 000378 16 RGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPT-SGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 16 ~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~-~g~~laa~~~D~tI~~wd~~ 92 (1605)
-|++| .+....||.|+.+||+ ||++.+++|.+-++..+.+ .+|...|..+.|+|- ++..||++++|+|||+|+++
T Consensus 172 ~gd~r--Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTR--PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCC--cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 34443 4678999999999999 9999999999999988888 999999999999997 47899999999999999999
Q ss_pred CCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc
Q 000378 93 TEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI 159 (1605)
Q Consensus 93 ~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV 159 (1605)
++.+ .|+|+|+|+++. +|=|.+- |+ |+ ..+...+=-.|||+. +|
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW-------Rl--WD----~~tk~ElL~QEGHs~----------~v 306 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW-------RL--WD----LETKSELLLQEGHSK----------GV 306 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccch-------hh--cc----cccchhhHhhccccc----------cc
Confidence 9644 899999999999 6999999 99 99 888777766999999 99
Q ss_pred eEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCC--e
Q 000378 160 VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP--S 237 (1605)
Q Consensus 160 ~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~--~ 237 (1605)
-++||||||-++++|+-|.+-|+||+-||.-+-.|.+ |.--|-+++|+|+|..|+|||.|+|.++||+--.+. .
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g----H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG----HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCcEEEEecc----cccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999973333 1
Q ss_pred eee----------------------eccceeEEEEEEeeCCCCCcccccccccCCccccccc
Q 000378 238 MIG----------------------MDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIP 277 (1605)
Q Consensus 238 m~g----------------------~~g~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~~ 277 (1605)
|-+ .|+++.+|-+| +-.||+.=.=-+-.|-|+||.
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~-----~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR-----TWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCC-----CcccchhhcCCccceEEEEec
Confidence 111 16788888765 455555544445557777764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=239.44 Aligned_cols=255 Identities=22% Similarity=0.206 Sum_probs=195.5
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCc--eeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeecc-CCC---
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGS--RIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF-DTE--- 94 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~--~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~-~~~--- 94 (1605)
.|.|+.|||||..||+ +.++.|++|+..++. .+.. .+|...|..++||| ||+.|++++.|++||+||+ +..
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEE
Confidence 7899999999999999 799999999998777 5555 69999999999999 9999999999999999999 332
Q ss_pred ce---------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeee
Q 000378 95 QS---------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 95 q~---------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~ 164 (1605)
++ +++|+|+|+.+. +|.|++| |. |+ ..+++.+++++||.+ +|.+++|
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tv-------ri--Wd----~~~~~~~~~l~~hs~----------~is~~~f 296 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTV-------RI--WD----VRTGECVRKLKGHSD----------GISGLAF 296 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCCCcE-------EE--Ee----ccCCeEEEeeeccCC----------ceEEEEE
Confidence 11 999999998777 7999999 77 99 888999999999999 9999999
Q ss_pred ecCCCeEEEEecCceEEEEecccce--EEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeec
Q 000378 165 HPRLPVLYVAYADGLIRAYNIHTYA--VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMD 242 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i~t~~--v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~ 242 (1605)
+||+.+|++|+.||+||+||+.++. +.-+++.+.... .+.++.|||+|+.|+++..|+++++|++...+.-+.-..
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA--PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC--ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 9999999999999999999999999 455777733322 599999999999999999999999999995544333221
Q ss_pred cceeEEEE-EEeeCCCCCcccccccccCCccccccc--eeeccCCCcceecCCcccccccccccchhh
Q 000378 243 GSLQVWKT-RVIINPNRPPMQANFFEPASIESIDIP--RILSQQGGEAVYPLPRVRALEVHPRLNLAV 307 (1605)
Q Consensus 243 g~~~~w~~-rv~~~~~~~~~~a~~~~~a~~es~d~~--~il~~~~g~~vyp~p~~~~~~~h~~~n~~~ 307 (1605)
=...++.. |++..++..-. -.-++.-.|+.-|+. .++-..-|.+ .+.+..+-.||..|+-+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i-~sg~~d~~v~~~~~~s~~~~~~l~~h~---~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLI-YSGSEDGSVYVWDSSSGGILQRLEGHS---KAAVSDLSSHPTENLIA 438 (456)
T ss_pred cCCcceeEecccccCCCCeE-EEEeCCceEEEEeCCccchhhhhcCCC---CCceeccccCCCcCeee
Confidence 11112211 22222222111 112233334444443 2222223333 66778888899988876
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=239.89 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=183.6
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|.+.+-..|+.+ ||.. +|..++|||+|++|++ +.|.+-++||+.|++.+-- =+|+.+|..+||.| ||.++++
T Consensus 246 w~~~~e~~l~~l~gH~~----RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~t 320 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLA----RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAAT 320 (459)
T ss_pred eccCCCcchhhhhcchh----hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeec
Confidence 888998888999 9998 9999999999999999 9999999999999999988 89999999999999 9999999
Q ss_pred EecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 80 ILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
|+.|..=|+||+-|.+- .|+|||+|-.+| +|+|.++ |- |+ .--+..+-|+-+|+
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~-------kV--WD----LR~r~~ly~ipAH~ 387 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTC-------KV--WD----LRMRSELYTIPAHS 387 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcE-------EE--ee----ecccccceeccccc
Confidence 99999999999988633 999999999999 5999999 66 98 44444477899999
Q ss_pred CCcccccccCCCceEeeeec-CCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCe
Q 000378 147 APTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgt 225 (1605)
+ =|..+-|+| -|.+|++||.|+++|+|.-.++...-+|++ |-.-|-+++++||++++++++.|+|
T Consensus 388 n----------lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG----He~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 388 N----------LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG----HEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred c----------hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC----CccceEEEEeccCCceEEEeccCce
Confidence 9 899999999 899999999999999999999999999999 9999999999999999999999999
Q ss_pred EEeee
Q 000378 226 LLAWD 230 (1605)
Q Consensus 226 l~~W~ 230 (1605)
+|+|-
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=220.03 Aligned_cols=204 Identities=20% Similarity=0.191 Sum_probs=176.8
Q ss_pred Cccccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccC--CcceeeeeecCCC-Cc
Q 000378 1 MEWATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDI--NSPVVRMAYSPTS-GH 75 (1605)
Q Consensus 1 m~W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~--~~~v~~lA~SP~~-g~ 75 (1605)
|-|++.+...-|.+ ||+- -|-|+|||||.+-|.+ |-|++|++||.+++|+....+. ..=|..+.|||.. --
T Consensus 88 rlWDl~~g~~t~~f~GH~~----dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTK----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEecCCcEEEEEEecCC----ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 46999887666667 9999 9999999999999999 9999999999999999999666 5778999999964 47
Q ss_pred eEEEEecCCcEEeeccCCCc------------eEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeee
Q 000378 76 AVVAILEDCTIRSCDFDTEQ------------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1605)
Q Consensus 76 ~laa~~~D~tI~~wd~~~~q------------~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~ 142 (1605)
+|+++++|.|+|+||+.+.| +.|++||||-..+ +..|+++ -| |+ ..+.+-+.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~-------~L--wd----L~~~k~lysl 230 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA-------ML--WD----LNEGKNLYSL 230 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE-------EE--EE----ccCCceeEec
Confidence 99999999999999999842 2899999999998 7888988 55 99 8888888777
Q ss_pred ecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeec---cccccccce--eEeecCCceEE
Q 000378 143 EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLD---NTIKLLGAG--AFAFHPTLEWL 217 (1605)
Q Consensus 143 eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~---~~~~~~g~~--a~Af~P~g~~l 217 (1605)
++ .+ +|.+|+|+|+-+||+.|.+ -.||+||..+..++.+|..| ++.+..++. ++||++||+.|
T Consensus 231 ~a-~~----------~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 231 EA-FD----------IVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred cC-CC----------eEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 54 45 7999999999999999994 45999999999999999884 233444444 78999999999
Q ss_pred EEecCCCeEEeeecCC
Q 000378 218 FVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 218 ~~G~~dgtl~~W~vs~ 233 (1605)
|.|..|+.|.+|||..
T Consensus 299 f~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeecCCcEEEEEeec
Confidence 9999999999999863
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=230.97 Aligned_cols=195 Identities=18% Similarity=0.250 Sum_probs=169.2
Q ss_pred ccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEec-cCCceeee-ccCCcceeeeeecCCCCceEEEEecCCc
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDT-LTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~-~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
.++.+ ||.. .|++++|||||+.|++ +.|.+|++||+ ..|+-+.+ .+|...|.+++|+| +|+.|++|+.|+|
T Consensus 195 ~~~~l~~h~~----~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 195 LLRELSGHTR----GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGT 269 (456)
T ss_pred hhcccccccc----ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCc
Confidence 44555 7777 9999999999999999 99999999999 55577777 79999999999999 5599999999999
Q ss_pred EEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEecccccccee--EEeeeecCCCCcc
Q 000378 86 IRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVT--VVGTVEGGRAPTK 150 (1605)
Q Consensus 86 I~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~--~vgt~eG~~~~~~ 150 (1605)
||+||+.+... +++|++|+..+. +|.|++| +. |+ ..+.. .+.++.++..
T Consensus 270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i-------~v--wd----~~~~~~~~~~~~~~~~~--- 333 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI-------RV--WD----LETGSKLCLKLLSGAEN--- 333 (456)
T ss_pred EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE-------EE--EE----CCCCceeeeecccCCCC---
Confidence 99999998432 899999999999 5779999 66 99 66666 5667888877
Q ss_pred cccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccce---eEeecCCceEEEEecCCCeEE
Q 000378 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG---AFAFHPTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 151 ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~---a~Af~P~g~~l~~G~~dgtl~ 227 (1605)
-+ ||.++.|||++..|++++.|+++|+||+.++.+.-+..+ |..++. +.-+++.|+|+.+|+.|+.|+
T Consensus 334 ----~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 334 ----SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG----HSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred ----CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc----cCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 12 699999999999999999999999999999999888888 877643 344589999999999999999
Q ss_pred eeecCCC
Q 000378 228 AWDVSIE 234 (1605)
Q Consensus 228 ~W~vs~~ 234 (1605)
+||+++.
T Consensus 405 ~~~~~s~ 411 (456)
T KOG0266|consen 405 VWDSSSG 411 (456)
T ss_pred EEeCCcc
Confidence 9999953
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=192.70 Aligned_cols=190 Identities=26% Similarity=0.309 Sum_probs=166.7
Q ss_pred ccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEe
Q 000378 12 RHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1605)
Q Consensus 12 ~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~ 88 (1605)
+.+ +|.. .|.|++|+|++.+|++ +.++.|.+||..++..+.. ..+..++..+.|+| ++..|++++.|++|++
T Consensus 3 ~~~~~h~~----~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLKGHTG----GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRL 77 (289)
T ss_pred hHhcccCC----CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEE
Confidence 445 6777 8999999999999999 5599999999999987666 77888899999999 6789999999999999
Q ss_pred eccCCCc------------eEEEeCCCcccccccc-CceeEeccCCCcceEEeccccccceeEEeeeecCCCCccccccc
Q 000378 89 CDFDTEQ------------SFVLHSPEKKMESISV-DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL 155 (1605)
Q Consensus 89 wd~~~~q------------~~v~~sp~~~~~~~s~-d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~ 155 (1605)
||+.+.+ .++.++|+++.+.++. |+.+ + +|+ ..+.+.+..+.+|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i-------~--~~~----~~~~~~~~~~~~~~~-------- 136 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI-------K--VWD----VETGKCLTTLRGHTD-------- 136 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeE-------E--EEE----CCCcEEEEEeccCCC--------
Confidence 9998731 1889999988888655 8888 4 488 666777777887877
Q ss_pred CCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 156 kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+|.+++++|++.+|++++.||.|++||+.++....++.. |...+.+++|+|+++.+++|+.||.|++||+..
T Consensus 137 --~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 137 --WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred --cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec----CccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 999999999999999999999999999999999888887 888999999999999999999999999999975
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=192.07 Aligned_cols=196 Identities=24% Similarity=0.315 Sum_probs=167.6
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeeeec-CceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAI-GTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~-g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|+......++.+ +|.. .+.+++|+|++.+|+++. ++.|.+||..++..+.. ..+...+..++|+| ++..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 152 (289)
T cd00200 78 WDLETGECVRTLTGHTS----YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVAS 152 (289)
T ss_pred EEcCcccceEEEeccCC----cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEE
Confidence 555554445555 5555 799999999999999965 99999999998888877 45888999999999 5888888
Q ss_pred EecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 80 ILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
++.|+.|++||+.+.+. ++.++|+++.+. ++.|+.| +. |+ ..+...+.++++|.
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i-------~i--~d----~~~~~~~~~~~~~~ 219 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI-------KL--WD----LSTGKCLGTLRGHE 219 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE-------EE--EE----CCCCceecchhhcC
Confidence 88899999999986321 899999997776 4668888 44 88 66677777777777
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeE
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 226 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl 226 (1605)
. +|.+++++|++.++++++.||.|++||+.++....+++. |...+.+++|+|++.+|++|+.||+|
T Consensus 220 ~----------~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 220 N----------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred C----------ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc----cCCcEEEEEECCCCCEEEEecCCCeE
Confidence 7 999999999999999999999999999999999988887 88899999999999999999999999
Q ss_pred Eeee
Q 000378 227 LAWD 230 (1605)
Q Consensus 227 ~~W~ 230 (1605)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-22 Score=223.59 Aligned_cols=205 Identities=20% Similarity=0.204 Sum_probs=174.2
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccC-Cceeee-ccCCcceeeeeecCCCCceEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLT-GSRIAS-IDINSPVVRMAYSPTSGHAVV 78 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~t-G~~~~~-l~~~~~v~~lA~SP~~g~~la 78 (1605)
|++.+..-++.+ ||.+ .|..++|+..|++||+ |-|-.|++||-.+ -..|.+ ++|.-.|.+++|=| -|..|+
T Consensus 135 ~D~~tg~~e~~LrGHt~----sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~il 209 (406)
T KOG0295|consen 135 FDTETGELERSLRGHTD----SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHIL 209 (406)
T ss_pred EEccchhhhhhhhcccc----ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeee
Confidence 677777778888 9999 7999999999999999 8898899999887 455666 99999999999999 579999
Q ss_pred EEecCCcEEeeccCCC---ce---------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 79 AILEDCTIRSCDFDTE---QS---------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~---q~---------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
+.+.|.|||.||++|. .+ .|.-+-||+++| .|.|-++ +.|+.. .+.-+.+ +.+|
T Consensus 210 S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl-------~vW~~~----t~~~k~~--lR~h 276 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL-------RVWVVA----TKQCKAE--LREH 276 (406)
T ss_pred ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE-------EEEEec----cchhhhh--hhcc
Confidence 9999999999999995 33 566678999998 5888888 775554 3322443 4555
Q ss_pred CCCcccccccCCCceEeeeecC---------------CCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEee
Q 000378 146 RAPTKIKTDLKKPIVNLACHPR---------------LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 210 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~P~---------------~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af 210 (1605)
-- ||-++|+-|. +|+|.|||.|++||+|||+||..++||-+ |..+|+.+||
T Consensus 277 Eh----------~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g----hdnwVr~~af 342 (406)
T KOG0295|consen 277 EH----------PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG----HDNWVRGVAF 342 (406)
T ss_pred cc----------ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec----ccceeeeeEE
Confidence 55 9999998764 37999999999999999999999999999 9999999999
Q ss_pred cCCceEEEEecCCCeEEeeecCCCCCeeee
Q 000378 211 HPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240 (1605)
Q Consensus 211 ~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g 240 (1605)
||.|+.|++..+|+||++||+..- .-|+-
T Consensus 343 ~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~ 371 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVWDLKNL-QCMKT 371 (406)
T ss_pred cCCCeEEEEEecCCcEEEEEeccc-eeeec
Confidence 999999999999999999999843 33443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=235.29 Aligned_cols=186 Identities=18% Similarity=0.216 Sum_probs=164.3
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccC-----------Ccee--------------------e-eccCCcceeeeee
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLT-----------GSRI--------------------A-SIDINSPVVRMAY 69 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~t-----------G~~~--------------------~-~l~~~~~v~~lA~ 69 (1605)
.|.|+.||+|+.+||. =.|..|++|-... .+++ . -.+|+.||.+..|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 7899999999999999 6789999998552 1122 1 2799999999999
Q ss_pred cCCCCceEEEEecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccce
Q 000378 70 SPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSV 136 (1605)
Q Consensus 70 SP~~g~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~ 136 (1605)
|| +...|++.++|+|||+|.++|... .|.|+|-|-+-+ +|.|.|. |+ |-+ ..-
T Consensus 460 sP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA-------rL--Ws~----d~~ 525 (707)
T KOG0263|consen 460 SP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA-------RL--WST----DHN 525 (707)
T ss_pred cc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee-------ee--eec----ccC
Confidence 99 777999999999999999999644 688999999999 6889888 88 773 335
Q ss_pred eEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceE
Q 000378 137 TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW 216 (1605)
Q Consensus 137 ~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~ 216 (1605)
+++-.+-||-+ -|.|++|||..-.+|+||.|.++|+||+.+|.+.=.+.+ |-..|.|++|||+|++
T Consensus 526 ~PlRifaghls----------DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----H~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 526 KPLRIFAGHLS----------DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG----HKGPVTALAFSPCGRY 591 (707)
T ss_pred Cchhhhccccc----------ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC----CCCceEEEEEcCCCce
Confidence 56656889999 999999999999999999999999999999999888888 9999999999999999
Q ss_pred EEEecCCCeEEeeecCCCCC
Q 000378 217 LFVGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 217 l~~G~~dgtl~~W~vs~~~~ 236 (1605)
|++|+.||+|++||+...++
T Consensus 592 LaSg~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSL 611 (707)
T ss_pred EeecccCCcEEEEEcCCCcc
Confidence 99999999999999997544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-21 Score=228.20 Aligned_cols=197 Identities=21% Similarity=0.325 Sum_probs=171.4
Q ss_pred ccccccccccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 2 EWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 2 ~W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
||...++-.=| -||.. ++.|++.||||+++|+ +.|+-||+||...|-=+.+ .+|.+.|..+.|+- +|++|++
T Consensus 336 eWqsEsYVlKQ-QgH~~----~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 336 EWQSESYVLKQ-QGHSD----RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred Eeeccceeeec-ccccc----ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 78777653222 26888 9999999999999999 9999999999998866666 99999999999999 9999999
Q ss_pred EecCCcEEeeccCCC---ce----------EEEeCCCcccccc-ccC-ceeEeccCCCcceEEeccccccceeEEeeeec
Q 000378 80 ILEDCTIRSCDFDTE---QS----------FVLHSPEKKMESI-SVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~---q~----------~v~~sp~~~~~~~-s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG 144 (1605)
.|-|||||.||+.-- +| ||+-.|.|...-+ +-| =+| .||- ..+++.+.++.|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I---------fvWS----~qTGqllDiLsG 476 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI---------FVWS----VQTGQLLDILSG 476 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE---------EEEE----eecCeeeehhcC
Confidence 999999999999763 22 8888888887754 334 344 6799 999999999999
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccc--eEEEEEeeccccccccceeEeecCCceEEEEecC
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY--AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~--~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~ 222 (1605)
|-. ||.+|+|+|++.+|||||||.|||+|||-.. ++- ||+. ..-|-+|+|||||+-|+|..-
T Consensus 477 HEg----------PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE-tl~i-----~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 477 HEG----------PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE-TLEI-----RSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred CCC----------cceeeEEccccCeEEeccccceEEEEEeeccCceee-eEee-----ccceeEEEEcCCCCeEEEEEe
Confidence 999 9999999999999999999999999999766 666 8876 556889999999999999999
Q ss_pred CCeEEeeecCC
Q 000378 223 RGTLLAWDVSI 233 (1605)
Q Consensus 223 dgtl~~W~vs~ 233 (1605)
||-|-+||+-.
T Consensus 541 dgqItf~d~~~ 551 (893)
T KOG0291|consen 541 DGQITFFDIKE 551 (893)
T ss_pred cceEEEEEhhh
Confidence 99999999863
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=219.66 Aligned_cols=212 Identities=18% Similarity=0.194 Sum_probs=175.1
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCC----CC
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPT----SG 74 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~----~g 74 (1605)
|+..+-..+-+. ||.. +|.|++|||||+.||+ +-|..|.+||+.||..+-. -+|...+++|||-|- ..
T Consensus 142 WD~~TeTp~~t~KgH~~----WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 142 WDLDTETPLFTCKGHKN----WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC 217 (480)
T ss_pred eccCCCCcceeecCCcc----EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc
Confidence 777776677777 9999 9999999999999999 8999999999999988766 899999999999731 44
Q ss_pred ceEEEEecCCcEEeeccCCCce------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeee
Q 000378 75 HAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1605)
Q Consensus 75 ~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~ 142 (1605)
..||+.+-|++||.||+..++- ||-.--||-+-.+|-|+|| |. |. ...+....++
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI-------kv--w~----a~dG~~~r~l 284 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI-------KV--WR----ALDGKLCREL 284 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE-------EE--EE----ccchhHHHhh
Confidence 5899999999999999987422 8887778887778999988 54 66 3333333333
Q ss_pred ecCCC-------------------Ccccc--------------------------------------------------c
Q 000378 143 EGGRA-------------------PTKIK--------------------------------------------------T 153 (1605)
Q Consensus 143 eG~~~-------------------~~~ik--------------------------------------------------~ 153 (1605)
.||.. +|+-| |
T Consensus 285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT 364 (480)
T ss_pred cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh
Confidence 33321 11111 2
Q ss_pred ccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 154 d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
-|.+=|..+.||||+.++||||-|..||+||..||+-+-+|++ |-+.|.-+|++-|-+.|++||.|.||++|+|.+
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG----Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG----HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh----ccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 2333678899999999999999999999999999999999999 999999999999999999999999999999986
Q ss_pred CC
Q 000378 234 ER 235 (1605)
Q Consensus 234 ~~ 235 (1605)
-.
T Consensus 441 kK 442 (480)
T KOG0271|consen 441 KK 442 (480)
T ss_pred ee
Confidence 54
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=229.83 Aligned_cols=189 Identities=10% Similarity=0.102 Sum_probs=161.9
Q ss_pred CCceeEeCCC-cceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce---
Q 000378 23 QPHEAAFHPN-QALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1605)
Q Consensus 23 ~v~~~aF~P~-gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~--- 96 (1605)
.+.+++|+|. +.+||+ +.|++|++||..+|..+.. -+|...|.+|+|+|.++..|++|+.|++|++||+.+.+.
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 6889999984 678888 8899999999999988877 689999999999998999999999999999999987422
Q ss_pred --------EEEe-CCCccccc-cccCceeEeccCCCcceEEecccccccee-EEeeeecCCCCcccccccCCCceEeeee
Q 000378 97 --------FVLH-SPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVT-VVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 97 --------~v~~-sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~-~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
++.| +++|..++ +|.|++| +. |+ ....+ .+.++.||.. +|.+|+|+
T Consensus 614 ~~~~~~v~~v~~~~~~g~~latgs~dg~I-------~i--wD----~~~~~~~~~~~~~h~~----------~V~~v~f~ 670 (793)
T PLN00181 614 IKTKANICCVQFPSESGRSLAFGSADHKV-------YY--YD----LRNPKLPLCTMIGHSK----------TVSYVRFV 670 (793)
T ss_pred EecCCCeEEEEEeCCCCCEEEEEeCCCeE-------EE--EE----CCCCCccceEecCCCC----------CEEEEEEe
Confidence 7788 46788888 5889999 55 88 43333 4557788887 99999997
Q ss_pred cCCCeEEEEecCceEEEEecccc------eEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeee
Q 000378 166 PRLPVLYVAYADGLIRAYNIHTY------AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI 239 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t~------~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~ 239 (1605)
++..|++|+.|++||+||+.++ ..+.++.+ |...+.+++|+|++.+|++|+.||++++|+.....|.++
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g----h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG----HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC----CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 7889999999999999999753 45668888 999999999999999999999999999999887666543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=205.18 Aligned_cols=221 Identities=19% Similarity=0.204 Sum_probs=182.4
Q ss_pred cccccc--cCCCCCCCCCceeEeCCCcceeee--ecCceEEEEec-----cCCceeee-ccCCcceeeeeecCCCCceEE
Q 000378 9 LDLRHV--GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDT-----LTGSRIAS-IDINSPVVRMAYSPTSGHAVV 78 (1605)
Q Consensus 9 ~~l~~~--g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~-----~tG~~~~~-l~~~~~v~~lA~SP~~g~~la 78 (1605)
+.++.. ||.+ .|-+++-.+.+.-+.+ +-|+.|++|+. .+|..... .+|.-+|.-++.|+ ||+...
T Consensus 5 l~l~~tl~gh~d----~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~al 79 (315)
T KOG0279|consen 5 LVLRGTLEGHTD----WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFAL 79 (315)
T ss_pred heeeeeecCCCc----eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEE
Confidence 555555 8999 9999999999655444 89999999984 44555555 88999999999999 999999
Q ss_pred EEecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 79 AILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
+++.|+++|+||+.+.++ +|+||||.++|- +|+|.|| ++ |+ ....-.+ |+..+
T Consensus 80 S~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi-------kl--wn----t~g~ck~-t~~~~ 145 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI-------KL--WN----TLGVCKY-TIHED 145 (315)
T ss_pred eccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCccee-------ee--ee----ecccEEE-EEecC
Confidence 999999999999999533 999999999987 7999999 88 99 7776666 43333
Q ss_pred --CCCcccccccCCCceEeeeecC--CCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEec
Q 000378 146 --RAPTKIKTDLKKPIVNLACHPR--LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 146 --~~~~~ik~d~kkpV~~LA~~P~--~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~ 221 (1605)
++ =|.++-|||+ .|+++++|||+++|+||+.|.++.-++-+ |...+.++++||||-..++|+
T Consensus 146 ~~~~----------WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g----h~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 146 SHRE----------WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG----HSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred CCcC----------cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc----ccccEEEEEECCCCCEEecCC
Confidence 77 8999999998 89999999999999999999999989999 999999999999999999999
Q ss_pred CCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCcccccc
Q 000378 222 RRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPPMQANF 265 (1605)
Q Consensus 222 ~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~~~a~~ 265 (1605)
+||.+.|||+...+- |--+++...|= -....||++-..|-.
T Consensus 212 kdg~~~LwdL~~~k~-lysl~a~~~v~--sl~fspnrywL~~at 252 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKN-LYSLEAFDIVN--SLCFSPNRYWLCAAT 252 (315)
T ss_pred CCceEEEEEccCCce-eEeccCCCeEe--eEEecCCceeEeecc
Confidence 999999999986554 44444433221 233456666554433
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-20 Score=228.73 Aligned_cols=206 Identities=10% Similarity=0.091 Sum_probs=166.8
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCC-Ccceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHP-NQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P-~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|++.+...++.+ +|.. .|.+++||| ++.+||+ +.|++|++||..+|..+..+.....|..++|++.+|+.||+
T Consensus 560 Wd~~~~~~~~~~~~H~~----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 560 WDVARSQLVTEMKEHEK----RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAF 635 (793)
T ss_pred EECCCCeEEEEecCCCC----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEE
Confidence 777776777777 8888 899999997 7889988 88999999999999998887777889999998779999999
Q ss_pred EecCCcEEeeccCCCc-------------eEEEeCCCccccccccCceeEeccCCCcceEEeccc--cccceeEEeeeec
Q 000378 80 ILEDCTIRSCDFDTEQ-------------SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH--RRMSVTVVGTVEG 144 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q-------------~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~--~~~s~~~vgt~eG 144 (1605)
|+.|++|++||+.+.+ .++.|++...++.+|.|++| ++ |+--. .....+.+.+++|
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~i-------ki--Wd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTL-------KL--WDLSMSISGINETPLHSFMG 706 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEE-------EE--EeCCCCccccCCcceEEEcC
Confidence 9999999999997632 17788744444447899999 77 87110 0112356778999
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccc---------cccccceeEeecCCce
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNT---------IKLLGAGAFAFHPTLE 215 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~---------~~~~g~~a~Af~P~g~ 215 (1605)
|.. .|..++|+|++++|++|+.||.|++|+..+..+..+...++. -|...|.+++|+|++.
T Consensus 707 h~~----------~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 707 HTN----------VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred CCC----------CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 998 999999999999999999999999999887765533322111 1334689999999999
Q ss_pred EEEEecCCCeEEeeec
Q 000378 216 WLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 216 ~l~~G~~dgtl~~W~v 231 (1605)
.|++|+.||+|++|++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=213.41 Aligned_cols=196 Identities=18% Similarity=0.189 Sum_probs=182.6
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeec---------
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYS--------- 70 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~S--------- 70 (1605)
|++.....++.+ ||+. .|.|+.|--+| +|++ |-|++|++|+++.|+-+.. .+|+.-|+.||.|
T Consensus 232 Wd~~~~~~~~~lsgHT~----~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtga 306 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTA----SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGA 306 (480)
T ss_pred EEccCceEEEEeccCcc----ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccc
Confidence 999998999999 9999 99999998777 4555 9999999999999999999 8999999999998
Q ss_pred --------------------------CCCCceEEEEecCCcEEeeccCC-Cce------------EEEeCCCccccc-cc
Q 000378 71 --------------------------PTSGHAVVAILEDCTIRSCDFDT-EQS------------FVLHSPEKKMES-IS 110 (1605)
Q Consensus 71 --------------------------P~~g~~laa~~~D~tI~~wd~~~-~q~------------~v~~sp~~~~~~-~s 110 (1605)
++.|..||+||.|.|+.+|+-.- +|+ .|.||||++++| +|
T Consensus 307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence 33456899999999999999755 333 999999999999 79
Q ss_pred cCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceE
Q 000378 111 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 190 (1605)
Q Consensus 111 ~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v 190 (1605)
=|..| || |+ -.+++.+.+|.||-+ +|-.+|.|-|..+|+|+|.|-+++.|+|.+-..
T Consensus 387 FDkSV-------kL--W~----g~tGk~lasfRGHv~----------~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 387 FDKSV-------KL--WD----GRTGKFLASFRGHVA----------AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred cccce-------ee--ee----CCCcchhhhhhhccc----------eeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 99999 99 99 789999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 191 HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 191 ~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
.+-|-+ |..-|.+|-++|||+-+++|..|.-+++|.
T Consensus 444 ~~DLpG----h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 444 KQDLPG----HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cccCCC----CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999 999999999999999999999999999994
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=214.83 Aligned_cols=192 Identities=15% Similarity=0.185 Sum_probs=156.7
Q ss_pred cCCCCCCCCCceeEeCC-Ccceeee-ecCceEEEEeccCCce-------eee-ccCCcceeeeeecCCCCceEEEEecCC
Q 000378 15 GRGDHKPLQPHEAAFHP-NQALIAV-AIGTYIIEFDTLTGSR-------IAS-IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P-~gallA~-a~g~~I~l~d~~tG~~-------~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
||.+ .|.+++||| |+.+||+ +.|++|++||..++.. +.. .+|...|..|+|+|.++++|++++.|+
T Consensus 73 GH~~----~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 73 GQEG----PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred CCCC----CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 7888 899999999 8888888 8999999999987632 333 679999999999997678999999999
Q ss_pred cEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccc
Q 000378 85 TIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI 151 (1605)
Q Consensus 85 tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i 151 (1605)
+|++||+.+.+. ++.|+|+|..++ +|.|++| +. |+ ..+.+.+.++.+|..
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~I-------rI--wD----~rsg~~v~tl~~H~~---- 211 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL-------NI--ID----PRDGTIVSSVEAHAS---- 211 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEE-------EE--EE----CCCCcEEEEEecCCC----
Confidence 999999988532 899999999998 5889999 66 99 777888888999986
Q ss_pred ccccCCCc-eEeeeecCCCeEEEEe----cCceEEEEecccceEEE-EEeeccccccccceeEeecCCceEEEEec-CCC
Q 000378 152 KTDLKKPI-VNLACHPRLPVLYVAY----ADGLIRAYNIHTYAVHY-TLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRG 224 (1605)
Q Consensus 152 k~d~kkpV-~~LA~~P~~~vL~~a~----~dg~IR~w~i~t~~v~~-tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dg 224 (1605)
.+ ..+.|+|++..|++++ .||.|++||+.+....+ +...| +..++....|+|++.+|++|+ .||
T Consensus 212 ------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d---~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 212 ------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD---QSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred ------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC---CCCceEEEEEcCCCCEEEEEEeCCC
Confidence 33 4567888877777643 58999999999876433 34442 224566678999999999877 599
Q ss_pred eEEeeecCCCCC
Q 000378 225 TLLAWDVSIERP 236 (1605)
Q Consensus 225 tl~~W~vs~~~~ 236 (1605)
+|++||+....+
T Consensus 283 ~Iriwdl~~~~~ 294 (493)
T PTZ00421 283 NIRCFELMNERL 294 (493)
T ss_pred eEEEEEeeCCce
Confidence 999999987654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=214.77 Aligned_cols=256 Identities=11% Similarity=0.106 Sum_probs=183.9
Q ss_pred cccccc-cCCCCCCCCCceeEeCCC-cceeee-ecCceEEEEeccCCce--------eee-ccCCcceeeeeecCCCCce
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPN-QALIAV-AIGTYIIEFDTLTGSR--------IAS-IDINSPVVRMAYSPTSGHA 76 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~-gallA~-a~g~~I~l~d~~tG~~--------~~~-l~~~~~v~~lA~SP~~g~~ 76 (1605)
..+..+ ||.. .|.+++|||+ +.+||+ +.|++|++||..++.. +.+ .+|...|..++|+|.+..+
T Consensus 65 ~~v~~L~gH~~----~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 65 PPVIKLKGHTS----SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred ceEEEEcCCCC----CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence 445666 8888 9999999997 789998 9999999999987642 112 5788999999999955567
Q ss_pred EEEEecCCcEEeeccCCCce-----------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeec
Q 000378 77 VVAILEDCTIRSCDFDTEQS-----------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1605)
Q Consensus 77 laa~~~D~tI~~wd~~~~q~-----------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG 144 (1605)
||+++.|++|++||+.+.+. ++.|+|+|..+++ +.|++| +. |+ ..+...+.+++|
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~I-------rI--wD----~Rsg~~i~tl~g 207 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHM-------HI--ID----PRKQEIASSFHI 207 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEE-------EE--EE----CCCCcEEEEEec
Confidence 78999999999999988532 8899999999984 678999 66 99 777888888999
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEecC----ceEEEEeccc-ceEEEEEeeccccccccceeEeecCCceEEEE
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD----GLIRAYNIHT-YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFV 219 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~d----g~IR~w~i~t-~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~ 219 (1605)
|...- .-+-|+...|+|++..|++++.| ++|++||+.+ ..++.++.+|. +...+-.+.++++|..+++
T Consensus 208 H~g~~-----~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 208 HDGGK-----NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred ccCCc-----eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEE
Confidence 98810 00123344567999999987767 4899999995 67776776643 2333345667889999999
Q ss_pred ecCCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCcccccccccCC---ccccccceeeccCCCcceec----CC
Q 000378 220 GDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPPMQANFFEPAS---IESIDIPRILSQQGGEAVYP----LP 292 (1605)
Q Consensus 220 G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~~~a~~~~~a~---~es~d~~~il~~~~g~~vyp----~p 292 (1605)
|+.|++|++|++..+.-..+ .-|+ ..-|.+.=-|-|-+ |-.-.|.|+|-.....+|.| +|
T Consensus 281 GkGD~tIr~~e~~~~~~~~l------~~~~-------s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl~~~~~i~pisf~vP 347 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGSIRKV------NEYK-------SCSPFRSFGFLPKQICDVYKCEIGRVYKNENNSSIRPISFYVP 347 (568)
T ss_pred EECCCeEEEEEccCCcEEee------cccc-------cCCCccceEEccccccCchhhhHhHHhhhcCCCeEEEEEEEec
Confidence 99999999999976532111 1111 11122222233333 44555677766654556777 47
Q ss_pred ccccccccc
Q 000378 293 RVRALEVHP 301 (1605)
Q Consensus 293 ~~~~~~~h~ 301 (1605)
|.+.=+||-
T Consensus 348 Rk~~~~Fq~ 356 (568)
T PTZ00420 348 RKNPTKFQE 356 (568)
T ss_pred cCCchhccc
Confidence 876444553
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=207.00 Aligned_cols=230 Identities=15% Similarity=0.221 Sum_probs=166.9
Q ss_pred EEEEeccCCceee----eccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCc-------------------eEEEe
Q 000378 44 IIEFDTLTGSRIA----SIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ-------------------SFVLH 100 (1605)
Q Consensus 44 I~l~d~~tG~~~~----~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q-------------------~~v~~ 100 (1605)
..++...+|+.-. ..+|..+|..++|||.+++.||++++|++|++||+.++. .+++|
T Consensus 54 ~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f 133 (493)
T PTZ00421 54 AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF 133 (493)
T ss_pred EEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe
Confidence 3444445555333 267899999999999889999999999999999996531 18999
Q ss_pred CCCc-cccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCc
Q 000378 101 SPEK-KMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1605)
Q Consensus 101 sp~~-~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg 178 (1605)
+|++ .+++ +|.|++| ++ |+ ..+...+.++++|.+ +|.+|+|+|++.+|++|+.||
T Consensus 134 ~P~~~~iLaSgs~DgtV-------rI--WD----l~tg~~~~~l~~h~~----------~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 134 HPSAMNVLASAGADMVV-------NV--WD----VERGKAVEVIKCHSD----------QITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred CcCCCCEEEEEeCCCEE-------EE--EE----CCCCeEEEEEcCCCC----------ceEEEEEECCCCEEEEecCCC
Confidence 9986 4666 6889999 66 99 778888888999998 999999999999999999999
Q ss_pred eEEEEecccceEEEEEeeccccccccc-eeEeecCCceEEE-Ee---cCCCeEEeeecCCC-CCe-e-------------
Q 000378 179 LIRAYNIHTYAVHYTLQLDNTIKLLGA-GAFAFHPTLEWLF-VG---DRRGTLLAWDVSIE-RPS-M------------- 238 (1605)
Q Consensus 179 ~IR~w~i~t~~v~~tL~~~~~~~~~g~-~a~Af~P~g~~l~-~G---~~dgtl~~W~vs~~-~~~-m------------- 238 (1605)
+||+||+.++.+++++.. |.... ..+.|+|++..|+ +| +.||+|++||+... .|. .
T Consensus 191 ~IrIwD~rsg~~v~tl~~----H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~ 266 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEA----HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPF 266 (493)
T ss_pred EEEEEECCCCcEEEEEec----CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEE
Confidence 999999999999999988 76543 4677899988887 45 36899999998621 110 0
Q ss_pred ---------e-ee-ccceeEEEEEE---e-eCC--CCCcccccccccCC---ccccccceeeccCCCcceec----CCcc
Q 000378 239 ---------I-GM-DGSLQVWKTRV---I-INP--NRPPMQANFFEPAS---IESIDIPRILSQQGGEAVYP----LPRV 294 (1605)
Q Consensus 239 ---------~-g~-~g~~~~w~~rv---~-~~~--~~~~~~a~~~~~a~---~es~d~~~il~~~~g~~vyp----~p~~ 294 (1605)
+ |- ||++.+|..+= + .+. ...|.+.-.|-|-. |..--|.|++-- ...+|.| +||.
T Consensus 267 ~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l-~~~~i~pis~~vpRk 345 (493)
T PTZ00421 267 FDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYAL-TYHSLYTIQMLLPRK 345 (493)
T ss_pred EcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEe-cCCeEEEEEEEeccC
Confidence 1 11 67899998871 0 010 11123333333332 445556666643 4566777 4787
Q ss_pred c-cccccc
Q 000378 295 R-ALEVHP 301 (1605)
Q Consensus 295 ~-~~~~h~ 301 (1605)
. +-+||.
T Consensus 346 ~~~~~fq~ 353 (493)
T PTZ00421 346 QADSELQV 353 (493)
T ss_pred CCcccccc
Confidence 5 335553
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=199.58 Aligned_cols=197 Identities=17% Similarity=0.229 Sum_probs=178.5
Q ss_pred ccccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEE
Q 000378 2 EWATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVV 78 (1605)
Q Consensus 2 ~W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~la 78 (1605)
||-... +.-|.+ ||-+ +|.|++|-|-..++|+ |.|++|++||..||....+ .+|-..|..+|+|+ .--.|-
T Consensus 136 eWHapw-Kl~rVi~gHlg----WVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlF 209 (460)
T KOG0285|consen 136 EWHAPW-KLYRVISGHLG----WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLF 209 (460)
T ss_pred cccCcc-eehhhhhhccc----eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEE
Confidence 566655 778888 9999 9999999999999999 9999999999999998888 77999999999997 556999
Q ss_pred EEecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 79 AILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
++++|+.||-||+...+. |+.-+|-...+. +++|.++ |. |+ --++-.|-++.||
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~-------Rv--WD----iRtr~~V~~l~GH 276 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI-------RV--WD----IRTRASVHVLSGH 276 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE-------EE--ee----ecccceEEEecCC
Confidence 999999999999998543 777778777776 6999999 77 99 6677778789999
Q ss_pred CCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCe
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgt 225 (1605)
+. ||.++.|-|-.|-+++||-|++||+||+..|.-..||+- |-..|+|++.||..-..++++.|.
T Consensus 277 ~~----------~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~----hkksvral~lhP~e~~fASas~dn- 341 (460)
T KOG0285|consen 277 TN----------PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH----HKKSVRALCLHPKENLFASASPDN- 341 (460)
T ss_pred CC----------cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec----ccceeeEEecCCchhhhhccCCcc-
Confidence 99 999999999999999999999999999999999999999 999999999999988888888875
Q ss_pred EEeeecC
Q 000378 226 LLAWDVS 232 (1605)
Q Consensus 226 l~~W~vs 232 (1605)
|+-|+++
T Consensus 342 ik~w~~p 348 (460)
T KOG0285|consen 342 IKQWKLP 348 (460)
T ss_pred ceeccCC
Confidence 7889998
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=203.99 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=173.4
Q ss_pred ccccccc----cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEe
Q 000378 8 HLDLRHV----GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAIL 81 (1605)
Q Consensus 8 ~~~l~~~----g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~ 81 (1605)
-++|||- |.....--.|-|++|+.+|-+||+ +.|..+++|+ .+|..+++ -.|-+||.+|-++- +|..|++++
T Consensus 218 q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~ 295 (524)
T KOG0273|consen 218 QLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNK-KGTYILSGG 295 (524)
T ss_pred hhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcC-CCCEEEecc
Confidence 3778876 233323358999999999999999 9999999999 88999999 78999999999999 888999999
Q ss_pred cCCcEEeeccCCCce-----------------------------------------------------EEEeCCCccccc
Q 000378 82 EDCTIRSCDFDTEQS-----------------------------------------------------FVLHSPEKKMES 108 (1605)
Q Consensus 82 ~D~tI~~wd~~~~q~-----------------------------------------------------~v~~sp~~~~~~ 108 (1605)
-|+|+-+||..+++. ++-|+|-|..++
T Consensus 296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLa 375 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLA 375 (524)
T ss_pred CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEE
Confidence 999999999977422 788889999999
Q ss_pred -cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC---------eEEEEecCc
Q 000378 109 -ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP---------VLYVAYADG 178 (1605)
Q Consensus 109 -~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~---------vL~~a~~dg 178 (1605)
.|.|+|+ |+ |+ .....-+--+.+|.- -|...-.||++| +|++++-|+
T Consensus 376 S~SdD~Tl-------ki--Ws----~~~~~~~~~l~~Hsk----------ei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 376 SCSDDGTL-------KI--WS----MGQSNSVHDLQAHSK----------EIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred EecCCCee-------Ee--ee----cCCCcchhhhhhhcc----------ceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 5888999 88 99 666666656888886 888888888887 489999999
Q ss_pred eEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 179 ~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+||+||+..|..+++|.. |-..|.++||+|+|+.|++||.||.+++|+..+
T Consensus 433 tV~lwdv~~gv~i~~f~k----H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 433 TVKLWDVESGVPIHTLMK----HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred eEEEEEccCCceeEeecc----CCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 999999999999999999 999999999999999999999999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=188.34 Aligned_cols=194 Identities=18% Similarity=0.205 Sum_probs=166.0
Q ss_pred ccccc-cCCCCCCCCCceeEeCCC-cceeee-ecCceEEEEeccCCc----eeee-ccCCcceeeeeecCCCCceEEEEe
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPN-QALIAV-AIGTYIIEFDTLTGS----RIAS-IDINSPVVRMAYSPTSGHAVVAIL 81 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~-gallA~-a~g~~I~l~d~~tG~----~~~~-l~~~~~v~~lA~SP~~g~~laa~~ 81 (1605)
.++.+ ||.+ ++-.+||||- |.+||+ +.|+.|++|+...|. +.-. =+|--.|.++|||| .|..||+++
T Consensus 6 ~~~~~~gh~~----r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKD----RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASAS 80 (312)
T ss_pred eEEeecCCCC----cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEee
Confidence 34555 8888 9999999999 999999 999999999966321 2111 36889999999999 888999999
Q ss_pred cCCcEEeeccCCC--------------ceEEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 82 EDCTIRSCDFDTE--------------QSFVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 82 ~D~tI~~wd~~~~--------------q~~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
.|+|+-+|-=.+. --||+||++|.++|+ |+|..| |+|--- ...+...++.+++|+
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV---------WiWe~d-eddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV---------WIWEID-EDDEFECIAVLQEHT 150 (312)
T ss_pred ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE---------EEEEec-CCCcEEEEeeecccc
Confidence 9999999976641 119999999999995 999999 999822 334667777899999
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecc---cceEEEEEeeccccccccceeEeecCCceEEEEecCC
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH---TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~---t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~d 223 (1605)
- .|.-+.+||---+|+|+|-|.+||+|.-. +.+-..||.+ |.+-|-+++|+|+|+-|+++|.|
T Consensus 151 q----------DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g----~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 151 Q----------DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG----HENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred c----------cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC----ccceEEEEEecCCCceEEEecCC
Confidence 9 99999999999999999999999999877 4455569999 99999999999999999999999
Q ss_pred CeEEeeecC
Q 000378 224 GTLLAWDVS 232 (1605)
Q Consensus 224 gtl~~W~vs 232 (1605)
+|+++|..-
T Consensus 217 ~tv~Iw~~~ 225 (312)
T KOG0645|consen 217 GTVSIWRLY 225 (312)
T ss_pred cceEeeeec
Confidence 999999854
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-18 Score=186.91 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=174.4
Q ss_pred ccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEe
Q 000378 12 RHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1605)
Q Consensus 12 ~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~ 88 (1605)
|++ ||.+ -|.|+-|++|.++|.+ |-|..+++||..|.-|.-. .-.+.=|-..|||| +|..||.|.-|.-.-.
T Consensus 49 r~LkGH~~----Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLN----KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSI 123 (343)
T ss_pred EEeccccc----ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEE
Confidence 667 9999 9999999999999999 9999999999999999888 55667789999999 9999999999977777
Q ss_pred eccCCC--c------------e----EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcc
Q 000378 89 CDFDTE--Q------------S----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1605)
Q Consensus 89 wd~~~~--q------------~----~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ 150 (1605)
+++.+. . + |.-|-+|+.++-.|.|+|. .+ |. .-++..+..+.||..
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TC-------al--WD----ie~g~~~~~f~GH~g--- 187 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTC-------AL--WD----IETGQQTQVFHGHTG--- 187 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceE-------EE--EE----cccceEEEEecCCcc---
Confidence 777653 1 1 7788899999988999999 67 99 999999988999999
Q ss_pred cccccCCCceEeeeec-CCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEee
Q 000378 151 IKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 151 ik~d~kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
.|.+|+++| ++.+.+||+-|++.++||+-.+...-|+.+ |-.-|.++.|+|+|.-+++||+|+|.+++
T Consensus 188 -------DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g----hesDINsv~ffP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 188 -------DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG----HESDINSVRFFPSGDAFATGSDDATCRLY 256 (343)
T ss_pred -------cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc----cccccceEEEccCCCeeeecCCCceeEEE
Confidence 999999999 999999999999999999999988889999 99999999999999999999999999999
Q ss_pred ecCC
Q 000378 230 DVSI 233 (1605)
Q Consensus 230 ~vs~ 233 (1605)
|+-.
T Consensus 257 DlRa 260 (343)
T KOG0286|consen 257 DLRA 260 (343)
T ss_pred eecC
Confidence 9974
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=185.13 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=173.6
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEe
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~ 88 (1605)
-|.+ ||++ -+.|--|-+|+.+|-.|.|.++-+||..||.++.. .+|.+-|.+|+++|-++.+.|+|+-|.+.|+
T Consensus 138 ~r~l~gHtg----ylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 138 SRELAGHTG----YLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred eeeecCccc----eeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence 3455 8999 89999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eccCCC---ce---------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccccccc
Q 000378 89 CDFDTE---QS---------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL 155 (1605)
Q Consensus 89 wd~~~~---q~---------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~ 155 (1605)
||+-.+ |+ +|.|.|+|--++ +|.|.+. |+ |. .-+...+.+++.-. .
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc-------Rl--yD----lRaD~~~a~ys~~~--------~ 272 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC-------RL--YD----LRADQELAVYSHDS--------I 272 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCCeeeecCCCcee-------EE--Ee----ecCCcEEeeeccCc--------c
Confidence 999885 33 999999999999 5888999 88 77 55666665666222 3
Q ss_pred CCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEee
Q 000378 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 156 kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
--||+++|||-.|.+|++||.|.++-.||.--++.+..|.+ |-+-|.++.-+|||.-|++||=|-+|++|
T Consensus 273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G----HeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG----HENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec----cCCeeEEEEECCCCcEEEecchhHheeec
Confidence 45999999999999999999999999999999999999999 99999999999999999999999999999
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=168.72 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=143.1
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceee-e-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEE-E
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIA-V-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-A 79 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA-~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~la-a 79 (1605)
|++.+...++.+..+. .|++++|+|||+.|+ + +.+..|.+||..+|+.+..+.....+..++|+| +|+.++ +
T Consensus 16 ~d~~t~~~~~~~~~~~----~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~ 90 (300)
T TIGR03866 16 IDTATLEVTRTFPVGQ----RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIA 90 (300)
T ss_pred EECCCCceEEEEECCC----CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEE
Confidence 6665555566663333 578999999999774 4 567899999999999888765555678899999 666664 4
Q ss_pred EecCCcEEeeccCCCc-----------eEEEeCCCcccccccc-CceeEeccCCCcceEEeccccccceeEEeeeecCCC
Q 000378 80 ILEDCTIRSCDFDTEQ-----------SFVLHSPEKKMESISV-DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q-----------~~v~~sp~~~~~~~s~-d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~ 147 (1605)
...|++|++||+.+.+ .+++++|||+.+..+. ++.+ .++|. ..+.+.+.++..+
T Consensus 91 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--------~~~~d----~~~~~~~~~~~~~-- 156 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNM--------AHFID----TKTYEIVDNVLVD-- 156 (300)
T ss_pred cCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCe--------EEEEe----CCCCeEEEEEEcC--
Confidence 5578999999998742 1678999999888543 3222 12345 3444444332211
Q ss_pred CcccccccCCCceEeeeecCCCeEEEEe-cCceEEEEecccceEEEEEeec-ccccccc--ceeEeecCCceEEEEe-cC
Q 000378 148 PTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHYTLQLD-NTIKLLG--AGAFAFHPTLEWLFVG-DR 222 (1605)
Q Consensus 148 ~~~ik~d~kkpV~~LA~~P~~~vL~~a~-~dg~IR~w~i~t~~v~~tL~~~-~~~~~~g--~~a~Af~P~g~~l~~G-~~ 222 (1605)
..+.+++|+||+..|++++ .||.|++||+.+++...++... +.++..+ ...++|+|||+.++++ ..
T Consensus 157 ---------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 157 ---------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred ---------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 1347899999999997665 5999999999999887666541 1122222 2368999999997754 45
Q ss_pred CCeEEeeecCCC
Q 000378 223 RGTLLAWDVSIE 234 (1605)
Q Consensus 223 dgtl~~W~vs~~ 234 (1605)
+++|.+||+.+-
T Consensus 228 ~~~i~v~d~~~~ 239 (300)
T TIGR03866 228 ANRVAVVDAKTY 239 (300)
T ss_pred CCeEEEEECCCC
Confidence 778999998643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=200.15 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=173.2
Q ss_pred cCCCCCCCCCceeEeCC-Ccceeee-ecCceEEEEeccC-Cceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeec
Q 000378 15 GRGDHKPLQPHEAAFHP-NQALIAV-AIGTYIIEFDTLT-GSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P-~gallA~-a~g~~I~l~d~~t-G~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd 90 (1605)
||.. .|.|+-|.| .+.||.+ +.|+.|+||++-. |+.+++ ++|..+|..++||. +|..+.+++.|++||+||
T Consensus 212 gH~k----gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 212 GHTK----GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWD 286 (503)
T ss_pred CCcc----ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeec
Confidence 8888 999999999 9999999 9999999999998 777777 99999999999999 888899999999999999
Q ss_pred cCCCce-----------EEEeCCCc--cccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCC
Q 000378 91 FDTEQS-----------FVLHSPEK--KMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK 157 (1605)
Q Consensus 91 ~~~~q~-----------~v~~sp~~--~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kk 157 (1605)
..|+|- ||-|+||+ ..+++.+|+.| +. |. --++++|...--|-.
T Consensus 287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki-------~~--wD----iRs~kvvqeYd~hLg---------- 343 (503)
T KOG0282|consen 287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKI-------RQ--WD----IRSGKVVQEYDRHLG---------- 343 (503)
T ss_pred cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcE-------EE--Ee----ccchHHHHHHHhhhh----------
Confidence 999754 99999998 34457888999 77 99 889999988888888
Q ss_pred CceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccc----------------------------------
Q 000378 158 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL---------------------------------- 203 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~---------------------------------- 203 (1605)
+|-.+-|-|.+.-.++.|+|+.+|+|+.....++ .++.|+.+|.-
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i-k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPI-KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEEcCCCccc-hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence 9999999999999999999999999999999999 89999988876
Q ss_pred -----------cceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 204 -----------GAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 204 -----------g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+..-+.|||||+.|++||.||.+.+||-.+
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 334789999999999999999999999753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=194.80 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=142.9
Q ss_pred eCCCcceeeeec-------CceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC------
Q 000378 29 FHPNQALIAVAI-------GTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE------ 94 (1605)
Q Consensus 29 F~P~gallA~a~-------g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~------ 94 (1605)
.+.++.++|+.| ...|++|+..+...+.. .+|..+|..++|||.+++.||+|+.|++|++||+.++
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 566677777733 35789999776655555 7899999999999977899999999999999998652
Q ss_pred ----------c----eEEEeCCCcccc-c-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCC
Q 000378 95 ----------Q----SFVLHSPEKKME-S-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 95 ----------q----~~v~~sp~~~~~-~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkp 158 (1605)
+ .+|+|+|++..+ + +|.|++| +. |+ ..+...+-++. |.. +
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI-------rI--WD----l~tg~~~~~i~-~~~----------~ 169 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV-------NI--WD----IENEKRAFQIN-MPK----------K 169 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE-------EE--EE----CCCCcEEEEEe-cCC----------c
Confidence 0 189999999865 4 5789999 66 99 66665554554 334 7
Q ss_pred ceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeE-----eecCCceEEEEecCC----CeEEee
Q 000378 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAF-----AFHPTLEWLFVGDRR----GTLLAW 229 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~-----Af~P~g~~l~~G~~d----gtl~~W 229 (1605)
|.+++|||+|.+|++++.|+.||+||+.++....++.+ |..++.+. .|+|++..|++++.| ++|++|
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g----H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI----HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec----ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 99999999999999999999999999999999989988 88765432 467999998865544 489999
Q ss_pred ecC-CCCC
Q 000378 230 DVS-IERP 236 (1605)
Q Consensus 230 ~vs-~~~~ 236 (1605)
|+. ...|
T Consensus 246 Dlr~~~~p 253 (568)
T PTZ00420 246 DLKNTTSA 253 (568)
T ss_pred ECCCCCCc
Confidence 988 3443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=176.86 Aligned_cols=211 Identities=18% Similarity=0.239 Sum_probs=154.6
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|.+.+..=.|++.|.++ ||+.+...||++.||+++..+|++||+.+++.-++ -+|..-|.++.|-- ||+.+..
T Consensus 25 Wqa~tG~C~rTiqh~ds---qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyT 100 (311)
T KOG0315|consen 25 WQALTGICSRTIQHPDS---QVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYT 100 (311)
T ss_pred eehhcCeEEEEEecCcc---ceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEe
Confidence 77888888889977774 99999999999999999999999999999998544 66778899999998 9999999
Q ss_pred EecCCcEEeeccCCC--ce----------EEEeCCCccccccccC--ceeEec----------c-----CCC--------
Q 000378 80 ILEDCTIRSCDFDTE--QS----------FVLHSPEKKMESISVD--TEVHLA----------L-----TPL-------- 122 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~--q~----------~v~~sp~~~~~~~s~d--~~ih~a----------~-----t~~-------- 122 (1605)
|++|||+|.||+-.- |. -|+|..+++.+ |.| +.||+= + |++
T Consensus 101 gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLi--s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d 178 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELI--SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD 178 (311)
T ss_pred cCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEE--eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC
Confidence 999999999999762 11 33333333333 333 344210 0 011
Q ss_pred -----------cceEEeccccccceeEEeeeecCCCCccccccc-----CCCceEeeeecCCCeEEEEecCceEEEEecc
Q 000378 123 -----------QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL-----KKPIVNLACHPRLPVLYVAYADGLIRAYNIH 186 (1605)
Q Consensus 123 -----------~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~-----kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~ 186 (1605)
+..||+ .+ +|-..|.|+.-. ..=|..--+|||+..||++|+|.++++||+.
T Consensus 179 gsml~a~nnkG~cyvW~----l~---------~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWR----LL---------NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CcEEEEecCCccEEEEE----cc---------CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 223444 11 233323332222 2256666788999999999999999999999
Q ss_pred cceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 187 TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 187 t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
++ ..-.+++ +=|--=+---|||-||+.||||+.|++.++||++...
T Consensus 246 ~~-~kle~~l--~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 246 DF-FKLELVL--TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred Cc-eeeEEEe--ecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 99 3333333 1154456678999999999999999999999999654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=195.71 Aligned_cols=212 Identities=16% Similarity=0.210 Sum_probs=179.4
Q ss_pred ccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceee--e---ccCCcceeeeeecCCCCceEEEEecCC
Q 000378 12 RHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIA--S---IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 12 ~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~--~---l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
+.+ ||.+ .|-++.-.-+|-+||+ |=|+.|++|-...+|-.. + .+|.+.|-.+|+|--+-..+|+++.||
T Consensus 359 ~ii~GH~e----~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 359 QIIPGHTE----AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred EEEeCchh----heeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 345 8999 8999997778899999 999999999553333322 2 899999999999863338999999999
Q ss_pred cEEeeccCC--Cce-------------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeee
Q 000378 85 TIRSCDFDT--EQS-------------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1605)
Q Consensus 85 tI~~wd~~~--~q~-------------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~ 142 (1605)
|||+|++.. +.. ||+++|+.+.+| +|-|.+. +. |+ .-....+||+
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta-------Ki--W~----le~~~l~~vL 501 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA-------KI--WD----LEQLRLLGVL 501 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce-------ee--ec----ccCceEEEEe
Confidence 999999987 211 999999999999 5999999 88 88 6678888999
Q ss_pred ecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecC
Q 000378 143 EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1605)
Q Consensus 143 eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~ 222 (1605)
.||+- -|+++-|+|-.++|+++|.|+|||+|+|+||..+-||.+ |...|--..|--+|+-|++++.
T Consensus 502 sGH~R----------Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG----H~~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 502 SGHTR----------GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG----HTSAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred eCCcc----------ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC----ccceeEeeeeeeCCcEEEeccC
Confidence 99998 999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCeEEeeecCCCCCeeeeecc-ceeEEEEEEeeC
Q 000378 223 RGTLLAWDVSIERPSMIGMDG-SLQVWKTRVIIN 255 (1605)
Q Consensus 223 dgtl~~W~vs~~~~~m~g~~g-~~~~w~~rv~~~ 255 (1605)
||-||+|++.+..=-|- +|+ +=.||-.-|..+
T Consensus 568 dGliKlWnikt~eC~~t-lD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMT-LDAHNDRVWALSVSPL 600 (775)
T ss_pred CCcEEEEeccchhhhhh-hhhccceeEEEeecCc
Confidence 99999999997643332 333 445665544433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-16 Score=164.66 Aligned_cols=207 Identities=18% Similarity=0.167 Sum_probs=150.6
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceeee--ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|++.....++.+..+. .+..++|||+|+.|++ +.+..|++||..+++.+..+.....+..++|+| +|+.++++
T Consensus 58 ~d~~~~~~~~~~~~~~----~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~ 132 (300)
T TIGR03866 58 IDLATGEVIGTLPSGP----DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNT 132 (300)
T ss_pred EECCCCcEEEeccCCC----CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEE
Confidence 5555544444442222 4678999999998766 357899999999988877777666788999999 99999988
Q ss_pred ecCC-cEEeeccCCCce-----------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 81 LEDC-TIRSCDFDTEQS-----------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 81 ~~D~-tI~~wd~~~~q~-----------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
..|+ .++.||..+.+. +++|+|||+.+.+ +.|++| +. |+ ..+.+.+.++..+.
T Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v-------~i--~d----~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 133 SETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTV-------SV--ID----VATRKVIKKITFEI 199 (300)
T ss_pred ecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEE-------EE--EE----cCcceeeeeeeecc
Confidence 8875 577889876321 6889999998854 346777 44 88 66776666554332
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEE-ecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEec-CCC
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVA-YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRG 224 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a-~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dg 224 (1605)
.. +..+ .-...+++++||+..++++ ..++.|.+||+.++++...+.. ...+.+++|+|+|++|++++ .+|
T Consensus 200 ~~--~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~ 271 (300)
T TIGR03866 200 PG--VHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-----GQRVWQLAFTPDEKYLLTTNGVSN 271 (300)
T ss_pred cc--cccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-----CCCcceEEECCCCCEEEEEcCCCC
Confidence 10 0000 0113468899999998775 3466899999999998855533 34678999999999999874 699
Q ss_pred eEEeeecCCCC
Q 000378 225 TLLAWDVSIER 235 (1605)
Q Consensus 225 tl~~W~vs~~~ 235 (1605)
+|.+||+...+
T Consensus 272 ~i~v~d~~~~~ 282 (300)
T TIGR03866 272 DVSVIDVAALK 282 (300)
T ss_pred eEEEEECCCCc
Confidence 99999998644
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-17 Score=187.28 Aligned_cols=192 Identities=19% Similarity=0.159 Sum_probs=170.3
Q ss_pred ccccc-cCCCCCCCCCceeEeCCCcceeee--ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCc
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
-||.+ +|.- +||..-|||++..+.+ +.|+.++.||+.|+-.... .+|.+-|...+++|+.+|++++|++|++
T Consensus 102 iLR~~~ah~a----pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 102 ILRQLYAHQA----PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred HHHHHhhccC----ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 35666 7777 9999999999888777 8899999999999987423 9999999999999999999999999999
Q ss_pred EEeeccCCCce------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccccc
Q 000378 86 IRSCDFDTEQS------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 86 I~~wd~~~~q~------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
||+||.-++.+ .|+|-|.|.+++...+..| |- |+ ++.|+.-++..++
T Consensus 178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~v-------kV--WD------------l~~G~qll~~~~~ 236 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSV-------KV--WD------------LTTGGQLLTSMFN 236 (487)
T ss_pred EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeE-------EE--EE------------ecCCceehhhhhc
Confidence 99999988622 8889999998877777777 55 88 6678888888888
Q ss_pred ccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 154 d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
|-|-|+||.+.-++.-|+||+-||-+|+||+.|+.+++.+.- .++|=++|-+||.+.+++|-.+|.+.+=+..
T Consensus 237 -H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 237 -HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----PGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred -ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----ccceeeEEecCCCceEEEecccceeeeehhh
Confidence 889999999999999999999999999999999999988776 6788899999999999999999999998665
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=185.30 Aligned_cols=218 Identities=22% Similarity=0.274 Sum_probs=189.4
Q ss_pred ccccccccccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 2 EWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 2 ~W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
+|-.+-++.-+..||.- +|-.+-|||+-++.|+ +-|.+|+.||--||...++ -+|...|..|+|+. .|..||+
T Consensus 93 ~wipRp~l~~~l~g~r~----~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~t 167 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRS----SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLAT 167 (406)
T ss_pred hcCCCCCchhhhhcccc----ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEe
Confidence 35555555555557766 8999999999999999 5999999999999999888 89999999999999 7889999
Q ss_pred EecCCcEEeeccCCCce-------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 80 ILEDCTIRSCDFDTEQS-------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~-------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
.+.|-+|++||+++.+. +|.|-|-|-++. .|.|.+| +. |. ..++.-|-|+.||
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti-------k~--We----~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI-------KA--WE----CDTGYCVKTFPGH 234 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce-------eE--Ee----cccceeEEeccCc
Confidence 99999999999998311 999999998887 7999999 88 88 8899999999999
Q ss_pred CCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCC------------
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT------------ 213 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~------------ 213 (1605)
+. =|+.++-+-||..+|++|.|.++|+|=+.|.+-+--|++ |--.|-+++|.|.
T Consensus 235 ~e----------wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~----hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 235 SE----------WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE----HEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred hH----------hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc----cccceEEEEecccccCcchhhccCC
Confidence 99 899999999999999999999999999999976666777 8888899988653
Q ss_pred ---ceEEEEecCCCeEEeeecCCCCCee--eee---------------------ccceeEEEEE
Q 000378 214 ---LEWLFVGDRRGTLLAWDVSIERPSM--IGM---------------------DGSLQVWKTR 251 (1605)
Q Consensus 214 ---g~~l~~G~~dgtl~~W~vs~~~~~m--~g~---------------------~g~~~~w~~r 251 (1605)
|+.+++||+|+||++|||++.+=-| .|- |++|.||..+
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred CCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 4799999999999999999875432 222 6899999875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=188.33 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=159.1
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC-----
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE----- 94 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~----- 94 (1605)
.|..+.|.|+|+.|.+ +--.+.+||+.. +..--. ..|..+|..|.||+ +|..+++|..|+.||.||.+-.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhhHHh
Confidence 7889999999999999 777799999973 333333 89999999999999 9999999999999999998752
Q ss_pred ---c----eEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeec
Q 000378 95 ---Q----SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 95 ---q----~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P 166 (1605)
+ ++++|||..-... .|.|++| +. |+ |++.+.-.+ +.||.- -|++++.||
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~i-------ki--Wd-f~~~kee~v---L~GHgw----------dVksvdWHP 232 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTI-------KI--WD-FRMPKEERV---LRGHGW----------DVKSVDWHP 232 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeE-------EE--Ee-ccCCchhhe---eccCCC----------CcceeccCC
Confidence 1 2999998665555 5888999 77 88 444443333 499999 999999999
Q ss_pred CCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 167 ~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.-..+||||.|.+|++||-.+|.-++||.. |-.-|-++-|.|++-||++||+|.++++.|+.
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHG----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhh----ccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 999999999999999999999999999999 99999999999999999999999999999997
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=182.73 Aligned_cols=142 Identities=17% Similarity=0.293 Sum_probs=122.9
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeeec----cCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC---
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASI----DINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--- 94 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l----~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--- 94 (1605)
=|+|+-|||||.++|+ +.|+.|.+||..||.++-.+ .|...|.+|+||| |+..++..+.|.|+|+||+.+.
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceE
Confidence 6999999999999999 99999999999999998885 5999999999999 8989999999999999999985
Q ss_pred ce------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEe
Q 000378 95 QS------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 95 q~------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~L 162 (1605)
++ -++.- .+.++.+|.+|++ .. ++ +....++.++.||-- +|++|
T Consensus 271 ~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~i-------n~--ln----~~d~~~~~~i~GHnK----------~ITaL 326 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTI-------NY--LN----PSDPSVLKVISGHNK----------SITAL 326 (603)
T ss_pred EEeecCCchhceEEEEEEe-CCeEEEEEcCcEE-------EE--ec----ccCCChhheeccccc----------ceeEE
Confidence 22 22222 5666767888888 44 56 666667778899877 99999
Q ss_pred eeecCCCeEEEEecCceEEEEecccce
Q 000378 163 ACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1605)
Q Consensus 163 A~~P~~~vL~~a~~dg~IR~w~i~t~~ 189 (1605)
+.|||+..||+||.||.|-=||+.+|.
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCcc
Confidence 999999999999999999999987664
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-17 Score=194.15 Aligned_cols=191 Identities=19% Similarity=0.206 Sum_probs=170.0
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeee--ecCceEEEEeccCCcee----------eeccCCcceeeeeecCCCCceE
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRI----------ASIDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~----------~~l~~~~~v~~lA~SP~~g~~l 77 (1605)
++.. ||.. .|-|+|++..|+-+-+ |-|++||+|+...-+.. ....|..-|+.+|+|| +-..+
T Consensus 404 ~a~~~gH~~----svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLi 478 (775)
T KOG0319|consen 404 VAQANGHTN----SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLI 478 (775)
T ss_pred hhhhccccc----ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceE
Confidence 4444 8999 9999999999986655 99999999996641111 1157899999999999 66799
Q ss_pred EEEecCCcEEeeccCCCce------------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeec
Q 000378 78 VAILEDCTIRSCDFDTEQS------------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG 144 (1605)
|.|++|.|.|+||+..-+. ||-|+|..+.+++ |.|+|| |. |. -.++..++|+||
T Consensus 479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv-------KI--W~----is~fSClkT~eG 545 (775)
T KOG0319|consen 479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV-------KI--WS----ISTFSCLKTFEG 545 (775)
T ss_pred EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE-------EE--EE----eccceeeeeecC
Confidence 9999999999999996322 9999999999995 899999 88 99 999999999999
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCC
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg 224 (1605)
|+. .|--..|--++..|.|+.+||+|++|||.|.+-..||-. |-.-|-||+-+|.+..++||+.||
T Consensus 546 H~~----------aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 546 HTS----------AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----HNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred ccc----------eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----ccceeEEEeecCccceeEecCCCe
Confidence 999 999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eEEeeecCC
Q 000378 225 TLLAWDVSI 233 (1605)
Q Consensus 225 tl~~W~vs~ 233 (1605)
+|-+|-=.+
T Consensus 612 ~i~~wkD~T 620 (775)
T KOG0319|consen 612 RIIFWKDVT 620 (775)
T ss_pred EEEEeecCc
Confidence 999995443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-17 Score=188.54 Aligned_cols=189 Identities=20% Similarity=0.282 Sum_probs=172.4
Q ss_pred CCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 16 RGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 16 ~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
|-. .|+++.||+||.++++ +-|..||.|+..-.-...+ ..+...|.-|||||.|. ..++.+.|++||+||+.-
T Consensus 137 HDs----~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 137 HDS----PVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hcc----cceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccC
Confidence 666 8999999999999999 8889999999886666666 55668999999999776 778999999999999987
Q ss_pred Cce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCce
Q 000378 94 EQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV 160 (1605)
Q Consensus 94 ~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~ 160 (1605)
-+. ||.++|.+..++ +|.|..| ++ |+ ..|+.-|-|+.+|+. -|.
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV-------Kl--WD----prSg~cl~tlh~HKn----------tVl 268 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV-------KL--WD----PRSGSCLATLHGHKN----------TVL 268 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEccCCcee-------Ee--ec----CCCcchhhhhhhccc----------eEE
Confidence 211 999999999999 6999988 99 99 999999999999999 999
Q ss_pred EeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEeeecCCCCC
Q 000378 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs~~~~ 236 (1605)
+|-|.|.+++|+++|.|-++|+|||.+-..++++++ |---|.+++.||=-+-|| +|+-||.|..|++..+.|
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~----Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG----HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc----chhhheeeccccccccceeeccCCCceEEEecccccc
Confidence 999999999999999999999999999999999999 999999999999999998 899999999999995555
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-17 Score=182.08 Aligned_cols=192 Identities=19% Similarity=0.273 Sum_probs=168.1
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|+.+...-++.+ ||++ .|-|+-| +-++|++ |-|.+|++||+.||.-+-+ +.|+..|-.+-||- ..+++
T Consensus 222 WD~n~~~c~~~L~GHtG----SVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvt 292 (499)
T KOG0281|consen 222 WDKNSLECLKILTGHTG----SVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVT 292 (499)
T ss_pred eccccHHHHHhhhcCCC----cEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEE
Confidence 888887778888 9999 8988888 5568888 9999999999999999999 99999999999998 79999
Q ss_pred EecCCcEEeeccCCCce---------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeec
Q 000378 80 ILEDCTIRSCDFDTEQS---------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~---------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG 144 (1605)
.+.|-+|+.||.+.... .|-|+ |+-+..+|+|.|| |- |. ..+...|-|+.|
T Consensus 293 cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-~kyIVsASgDRTi-------kv--W~----~st~efvRtl~g 358 (499)
T KOG0281|consen 293 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTI-------KV--WS----TSTCEFVRTLNG 358 (499)
T ss_pred ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-cceEEEecCCceE-------EE--Ee----ccceeeehhhhc
Confidence 99999999999987421 55564 3344447999999 66 99 999999999999
Q ss_pred CCCCcccccccCCCceEeeee-cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCC
Q 000378 145 GRAPTKIKTDLKKPIVNLACH-PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~-P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~d 223 (1605)
|+- ++||. =++.+++|||.|.+||+|||+.|+-+--|++ |---|+++-| |-+-+++|.-|
T Consensus 359 HkR-------------GIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeG----HEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 359 HKR-------------GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG----HEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred ccc-------------cceehhccCeEEEecCCCceEEEEeccccHHHHHHhc----hHHhhhheee--cCceeeecccc
Confidence 987 55666 6999999999999999999999999999999 9999999999 67899999999
Q ss_pred CeEEeeecC-CCCC
Q 000378 224 GTLLAWDVS-IERP 236 (1605)
Q Consensus 224 gtl~~W~vs-~~~~ 236 (1605)
|+|++||+- -+.|
T Consensus 420 GkikvWdl~aaldp 433 (499)
T KOG0281|consen 420 GKIKVWDLQAALDP 433 (499)
T ss_pred ceEEEEecccccCC
Confidence 999999998 3444
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-17 Score=181.52 Aligned_cols=203 Identities=21% Similarity=0.327 Sum_probs=169.0
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee---------ccCCcceeeeeecCCCCceEEEEecCCcEEeeccC
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS---------IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~---------l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
-|+|+-|||||++|++ |+|..|-+||-.||+..-- +-+.++|-.|.||- |..+||+|+.||-||.|-+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEe
Confidence 6999999999999999 9999999999999987643 56788999999999 88999999999999999998
Q ss_pred CCce-------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCC
Q 000378 93 TEQS-------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 93 ~~q~-------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkp 158 (1605)
|++- |+-||-|+-.+- +|-|-+| |. |+.++++.+..+.||+. =
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tv-------Ri------HGlKSGK~LKEfrGHsS----------y 350 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTV-------RI------HGLKSGKCLKEFRGHSS----------Y 350 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceE-------EE------eccccchhHHHhcCccc----------c
Confidence 8632 999998886654 7889888 55 78999999988999999 9
Q ss_pred ceEeeeecCCCeEEEEecCceEEEEecccceEEEEEee---c---cccccc------------------------cce--
Q 000378 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---D---NTIKLL------------------------GAG-- 206 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~---~---~~~~~~------------------------g~~-- 206 (1605)
|...-|++||--+.+||.||+||.||..|.+-+-|+.- | |++|+. =|+
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsf 430 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSF 430 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeee
Confidence 99999999999999999999999999988765444332 1 112221 111
Q ss_pred -----------eEeecCCceEEEEecCCCeEEeeecC---CCCCe------eeee--------------ccceeEEE
Q 000378 207 -----------AFAFHPTLEWLFVGDRRGTLLAWDVS---IERPS------MIGM--------------DGSLQVWK 249 (1605)
Q Consensus 207 -----------a~Af~P~g~~l~~G~~dgtl~~W~vs---~~~~~------m~g~--------------~g~~~~w~ 249 (1605)
+-+.||-|||+.+-+.|+.+.-+-+. -||+- .||| ||.++.|+
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 44569999999999999999988876 44443 4788 78888887
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-16 Score=187.91 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=160.9
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC-ceEEE
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-QSFVL 99 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q~~v~ 99 (1605)
-+-|.-|| ++.++..+.+++|.+||..+|..+.+ .+|.+.|.+++|.- .+..|++|+.|.|||.||..+. .+++.
T Consensus 210 ~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l 287 (537)
T KOG0274|consen 210 VVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSL 287 (537)
T ss_pred hhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence 57788999 88888889999999999999999999 89999999999987 7899999999999999999885 44444
Q ss_pred e----------CCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC
Q 000378 100 H----------SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 100 ~----------sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~ 169 (1605)
. .-+.....+|.|.+| +. |+ ...+..+.++.||.+ ||+++.++ ++
T Consensus 288 ~gh~stv~~~~~~~~~~~sgs~D~tV-------kV--W~----v~n~~~l~l~~~h~~----------~V~~v~~~--~~ 342 (537)
T KOG0274|consen 288 QGHTSSVRCLTIDPFLLVSGSRDNTV-------KV--WD----VTNGACLNLLRGHTG----------PVNCVQLD--EP 342 (537)
T ss_pred cCCCceEEEEEccCceEeeccCCceE-------EE--Ee----ccCcceEEEeccccc----------cEEEEEec--CC
Confidence 3 233344446788888 55 98 889999999999999 99999999 99
Q ss_pred eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 170 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
.|++|+.||+|+.||+.+++.+++|++ |..-|.++.|.+. ..+++|+-|++|++||+.+.
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~sl~g----H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKSLSG----HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeeeecC----CcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence 999999999999999999999999999 9999999998877 88999999999999999977
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=172.53 Aligned_cols=213 Identities=18% Similarity=0.207 Sum_probs=180.0
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEE
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~ 87 (1605)
+.++ .|.+ .|-|++.||+-.|+|+ +.|-.-.+||..||-.+-. .+|..+|..++||- ||..||.|.-||-|+
T Consensus 57 ~~tF~~H~~----svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 57 LVTFDKHTD----SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVL 131 (399)
T ss_pred eeehhhcCC----ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEE
Confidence 4566 8999 9999999999999999 8888899999999997777 99999999999999 999999999999999
Q ss_pred eeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccc
Q 000378 88 SCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1605)
Q Consensus 88 ~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d 154 (1605)
+|+..++.. -+-.+|-+.++. +|.|+.+ |+|. ..+.....++.||..
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv---------Wmw~----ip~~~~~kv~~Gh~~------- 191 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV---------WMWQ----IPSQALCKVMSGHNS------- 191 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE---------EEEE----CCCcceeeEecCCCC-------
Confidence 999999522 345689999988 6999999 9999 777788888999999
Q ss_pred cCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEee-----cccccccc-------------------------
Q 000378 155 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-----DNTIKLLG------------------------- 204 (1605)
Q Consensus 155 ~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~-----~~~~~~~g------------------------- 204 (1605)
|+.+=-|.|||..+++||.||+||+||..||++++++.. ++-|-+.-
T Consensus 192 ---~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 192 ---PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred ---CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence 999999999999999999999999999999999999882 22222220
Q ss_pred --------------------ceeEeecCCceEEEEecCCCeEEeeecCCCCCeeee-----e----------------cc
Q 000378 205 --------------------AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG-----M----------------DG 243 (1605)
Q Consensus 205 --------------------~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g-----~----------------~g 243 (1605)
|-+++++-+.-.-++|+-||||.|||....|+.-|= + +|
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g 348 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANG 348 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCc
Confidence 114445667777789999999999999976665442 2 68
Q ss_pred ceeEEEEE
Q 000378 244 SLQVWKTR 251 (1605)
Q Consensus 244 ~~~~w~~r 251 (1605)
.+..|-.|
T Consensus 349 ~v~~wDaR 356 (399)
T KOG0296|consen 349 KVRQWDAR 356 (399)
T ss_pred eEEeeecc
Confidence 88888877
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=169.92 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=173.8
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeecc-CCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~-~~~~v~~lA~SP~~g~~laa 79 (1605)
|++.+...+-.+ ||.+ .|-|+.||+||.+||+ ..+.-|++|++.||.....++ -..-+.=|.+-| .+|+|+|
T Consensus 91 W~~~~ge~~~eltgHKD----SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illA 165 (399)
T KOG0296|consen 91 WDISTGEFAGELTGHKD----SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLA 165 (399)
T ss_pred EEccCCcceeEecCCCC----ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEe
Confidence 888886655556 9999 9999999999999999 899999999999999888865 777788899999 9999999
Q ss_pred EecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEecc-----ccc--------
Q 000378 80 ILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGF-----HRR-------- 133 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~-----~~~-------- 133 (1605)
|+.||.|--|.+..+.. |=-|.||||.+. ++.|++| + ||+=+ |+.
T Consensus 166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti-------~--~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI-------I--VWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE-------E--EEecCCCceeEEecccccCcC
Confidence 99999999999998422 556779999998 5888998 3 37611 111
Q ss_pred --------------------------cceeEEeeeec--------CC---------------------------------
Q 000378 134 --------------------------MSVTVVGTVEG--------GR--------------------------------- 146 (1605)
Q Consensus 134 --------------------------~s~~~vgt~eG--------~~--------------------------------- 146 (1605)
.++++|.-..| +.
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc
Confidence 13444432222 00
Q ss_pred -CCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCe
Q 000378 147 -APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1605)
Q Consensus 147 -~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgt 225 (1605)
...|-+=.|.-+|..|-|-+ .++|++|.+||.||+||.-||+.++|..+ |-.+|.+||++|+.+.|+|+|.|++
T Consensus 317 ~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G----H~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 317 ASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG----HQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred cchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec----CchheeEEEEcCCCcEEEEecCCCe
Confidence 00122345677899999999 89999999999999999999999999999 9999999999999999999999999
Q ss_pred EEeeecC
Q 000378 226 LLAWDVS 232 (1605)
Q Consensus 226 l~~W~vs 232 (1605)
.+++.|+
T Consensus 392 a~VF~v~ 398 (399)
T KOG0296|consen 392 ALVFEVP 398 (399)
T ss_pred EEEEecC
Confidence 9999885
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-16 Score=186.08 Aligned_cols=193 Identities=19% Similarity=0.182 Sum_probs=170.3
Q ss_pred cccccccccccc-c-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceE
Q 000378 2 EWATVQHLDLRH-V-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 2 ~W~~~~~~~l~~-~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~l 77 (1605)
-|...+...++. + ||.+ .|.+++|..=+.+|.+ +.|++|++||..||+=+.+ .+|...|..|..=+ -.+
T Consensus 232 ~~~~~~~~~i~~~l~GH~g----~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~ 304 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFG----GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLL 304 (537)
T ss_pred EeecccceEEEeeccCCCC----CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceE
Confidence 477777777777 6 9999 9999999987777777 9999999999999999999 67999999998877 788
Q ss_pred EEEecCCcEEeeccCCCce------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 78 VAILEDCTIRSCDFDTEQS------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
++|+.|+|||+||+.+.+- +|.++ +..+..+|.|++| + ||+ ..+++.+-++.||
T Consensus 305 ~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v-------~--VW~----~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTV-------K--VWD----PRTGKCLKSLSGH 370 (537)
T ss_pred eeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceE-------E--EEE----hhhceeeeeecCC
Confidence 8999999999999997522 77777 7777888999999 5 499 7799999999999
Q ss_pred CCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccc-eEEEEEeeccccccccceeEeecCCceEEEEecCCC
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~-~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg 224 (1605)
.. .|.+|++.+- ..+++|+.|++||+||+.+. .-++||++ |...+..+.+ .++.|.+++.||
T Consensus 371 ~~----------~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~----h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 371 TG----------RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG----HTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred cc----------eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC----Cccccccccc--ccceeEeccccc
Confidence 99 9999987665 99999999999999999999 88889999 9998866655 678999999999
Q ss_pred eEEeeecC
Q 000378 225 TLLAWDVS 232 (1605)
Q Consensus 225 tl~~W~vs 232 (1605)
+|++||..
T Consensus 434 ~Ik~WD~~ 441 (537)
T KOG0274|consen 434 TIKLWDAE 441 (537)
T ss_pred cEEEeecc
Confidence 99999987
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=187.51 Aligned_cols=204 Identities=18% Similarity=0.270 Sum_probs=168.9
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|+-+-+..|--+ .|-+ +|++++|||+|.++.+ +.|-.|++|+-.+-+-+-+ ++|-+-|..+.|.+ .--.|++
T Consensus 36 WDYRM~tli~rFdeHdG----pVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlS 110 (1202)
T KOG0292|consen 36 WDYRMGTLIDRFDEHDG----PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILS 110 (1202)
T ss_pred ehhhhhhHHhhhhccCC----ccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEE
Confidence 655555555556 8889 9999999999999999 8899999999998877777 99999999999995 3349999
Q ss_pred EecCCcEEeeccCCCce------------EEEeCC-CccccccccCceeEeccCCCcceEEe--ccccccc---------
Q 000378 80 ILEDCTIRSCDFDTEQS------------FVLHSP-EKKMESISVDTEVHLALTPLQPVVFF--GFHRRMS--------- 135 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~------------~v~~sp-~~~~~~~s~d~~ih~a~t~~~l~vw~--~~~~~~s--------- 135 (1605)
.|.|.|||.||--+..- |-.|+| |.-+..+|=|-|| |- |+ |..+.+.
T Consensus 111 ASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV-------RV--WDisGLRkk~~~pg~~e~~~ 181 (1202)
T KOG0292|consen 111 ASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV-------RV--WDISGLRKKNKAPGSLEDQM 181 (1202)
T ss_pred ccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE-------EE--EeecchhccCCCCCCchhhh
Confidence 99999999999977532 788999 7777778999999 76 65 3333221
Q ss_pred -------------eeEEe-eeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEE--EEEeeccc
Q 000378 136 -------------VTVVG-TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH--YTLQLDNT 199 (1605)
Q Consensus 136 -------------~~~vg-t~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~--~tL~~~~~ 199 (1605)
--+|. .+|||.- .|.-.||||-.|+++||++|++|++|.+.-...- =|..+
T Consensus 182 ~~~~~~~dLfg~~DaVVK~VLEGHDR----------GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg--- 248 (1202)
T KOG0292|consen 182 RGQQGNSDLFGQTDAVVKHVLEGHDR----------GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG--- 248 (1202)
T ss_pred hccccchhhcCCcCeeeeeeeccccc----------ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc---
Confidence 11222 3677766 9999999999999999999999999998765432 28899
Q ss_pred cccccceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 200 IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 200 ~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
|-+.|.++-|||.-+.|.+-+.|++|++||+.--
T Consensus 249 -H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 249 -HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred -ccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 9999999999999999999999999999999743
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=177.59 Aligned_cols=222 Identities=17% Similarity=0.171 Sum_probs=184.3
Q ss_pred cccccccc------cccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCC---ceeeeccCCcceeeeeecC
Q 000378 3 WATVQHLD------LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTG---SRIASIDINSPVVRMAYSP 71 (1605)
Q Consensus 3 W~~~~~~~------l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG---~~~~~l~~~~~v~~lA~SP 71 (1605)
|.+.|+.. +..+ .|.+ +|+-++.-.+|+.|++ |.|++||+|++..+ |.-.+=.|.+-|.+|||-.
T Consensus 52 W~~~~d~~~~s~~~~asme~HsD----WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a 127 (735)
T KOG0308|consen 52 WSVTQDSNEPSTPYIASMEHHSD----WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA 127 (735)
T ss_pred eccccccCCcccchhhhhhhhHh----HHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecc
Confidence 88888754 5566 7999 9999999999999999 99999999999876 3333378999999999954
Q ss_pred CCCceEEEEecCCcEEeeccCCC--ce---------------------EEEeCCCccccccccCceeEeccCCCcceEEe
Q 000378 72 TSGHAVVAILEDCTIRSCDFDTE--QS---------------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFF 128 (1605)
Q Consensus 72 ~~g~~laa~~~D~tI~~wd~~~~--q~---------------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~ 128 (1605)
.+...+|+|+-|..|.+||+.+. ++ ++|-+|.|.++ .|.+++- -+-+|.
T Consensus 128 k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i-vsGgtek-------~lr~wD 199 (735)
T KOG0308|consen 128 KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII-VSGGTEK-------DLRLWD 199 (735)
T ss_pred cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE-EecCccc-------ceEEec
Confidence 48889999999999999999964 22 66667777666 4555444 345599
Q ss_pred ccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeE
Q 000378 129 GFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAF 208 (1605)
Q Consensus 129 ~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~ 208 (1605)
..+.+.+--+.||++ -|+.|-.++||..+.|||.||+||+||+-.-.-+.|++. |.-||-|+
T Consensus 200 ----prt~~kimkLrGHTd----------NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v----H~e~VWaL 261 (735)
T KOG0308|consen 200 ----PRTCKKIMKLRGHTD----------NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV----HKEGVWAL 261 (735)
T ss_pred ----cccccceeeeecccc----------ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe----ccCceEEE
Confidence 889998866999999 999999999999999999999999999987777779888 99999999
Q ss_pred eecCCceEEEEecCCCeEEeeecCCCCCeeeee-----------------------ccceeEEEEEEee
Q 000378 209 AFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGM-----------------------DGSLQVWKTRVII 254 (1605)
Q Consensus 209 Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~-----------------------~g~~~~w~~rv~~ 254 (1605)
.-+|....+.+|+|||-|..=|+...+-+..=+ |+.+.-|+.++..
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 999999999999999999999988642221111 6788888887765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=178.85 Aligned_cols=197 Identities=19% Similarity=0.227 Sum_probs=168.9
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcE
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
+..+ -|.+ -++|++-||++.++.+ |.|-+||+||=..+=...- -+|.-.|-.+||+|-|-.+.|++|-|.||
T Consensus 90 V~~FeAH~D----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 90 VKTFEAHSD----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred eEEeecccc----ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 3344 5788 8999999999999999 9999999999876543333 89999999999999999999999999999
Q ss_pred EeeccCCCce------------EEEeCCCc---cccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccc
Q 000378 87 RSCDFDTEQS------------FVLHSPEK---KMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI 151 (1605)
Q Consensus 87 ~~wd~~~~q~------------~v~~sp~~---~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i 151 (1605)
|.|.+-...+ ||-|-|-| -++.++.|.+| +- |. -.+-+-|.|+|||..
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti-------Kv--WD----yQtk~CV~TLeGHt~---- 228 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI-------KV--WD----YQTKSCVQTLEGHTN---- 228 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE-------EE--ee----cchHHHHHHhhcccc----
Confidence 9999976322 99998877 66668889998 66 99 888889999999999
Q ss_pred ccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 152 KTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 152 k~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
-|..+-|||..|+.++||+||++|+||-.||..-=||-. -+.-|-|+|-+++...+++|.+.|.+-+ .+
T Consensus 229 ------Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~----gleRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 229 ------NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY----GLERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred ------cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc----CCceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 999999999999999999999999999999988766655 5566779999999999999999998754 55
Q ss_pred CCCCCeee
Q 000378 232 SIERPSMI 239 (1605)
Q Consensus 232 s~~~~~m~ 239 (1605)
.-+-|.|.
T Consensus 298 greeP~vs 305 (794)
T KOG0276|consen 298 GREEPAVS 305 (794)
T ss_pred cCCCCcee
Confidence 66666653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=161.89 Aligned_cols=187 Identities=14% Similarity=0.204 Sum_probs=150.4
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee--------------------------------------------
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-------------------------------------------- 57 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-------------------------------------------- 57 (1605)
.++++.||+||.+|++ +-|-.|.|||.++|+...+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY 95 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY 95 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE
Confidence 7899999999999999 6777999999988876543
Q ss_pred -ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC----------ceEEEeCCCccccccccCc-eeEeccCCCcce
Q 000378 58 -IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE----------QSFVLHSPEKKMESISVDT-EVHLALTPLQPV 125 (1605)
Q Consensus 58 -l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~----------q~~v~~sp~~~~~~~s~d~-~ih~a~t~~~l~ 125 (1605)
-+|...|++|+-|| -+++.++++.|.|||+||+-++ .++.||+|+|-+.|++.++ .| ++
T Consensus 96 F~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~I-------kL- 166 (311)
T KOG1446|consen 96 FPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELI-------KL- 166 (311)
T ss_pred cCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeE-------EE-
Confidence 36788999999999 5599999999999999999864 3399999999999976665 77 77
Q ss_pred EEeccccccc-eeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccccc
Q 000378 126 VFFGFHRRMS-VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204 (1605)
Q Consensus 126 vw~~~~~~~s-~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g 204 (1605)
++ .|+- ..+-.|+.=.- .-+.-...|-|||||..+......+.|.+-|-=+|+++.|+++ |...
T Consensus 167 -yD---~Rs~dkgPF~tf~i~~-------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~----~~~~ 231 (311)
T KOG1446|consen 167 -YD---LRSFDKGPFTTFSITD-------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG----YPNA 231 (311)
T ss_pred -EE---ecccCCCCceeEccCC-------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee----ccCC
Confidence 55 1221 11111211110 1133688999999999999999999999999999999999999 5443
Q ss_pred c---eeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 205 A---GAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 205 ~---~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
= ....|+||++.+++|+.||||++|++.+
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 3 5778999999999999999999999943
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-16 Score=186.90 Aligned_cols=190 Identities=15% Similarity=0.231 Sum_probs=166.2
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|+..--..+-.+ ||.. .+.|+-||++.+|||+ +-+++||+||..+++...+ ++|-..+.+++|+| -|...|+
T Consensus 55 ~~i~kp~~i~S~~~hes----pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~ 129 (825)
T KOG0267|consen 55 WAIGKPNAITSLTGHES----PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFAS 129 (825)
T ss_pred ccccCCchhheeeccCC----cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEecc
Confidence 444444444555 7888 9999999999999999 8888999999999999999 89999999999999 8888899
Q ss_pred EecCCcEEeeccCC-C-------ce----EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 80 ILEDCTIRSCDFDT-E-------QS----FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~-~-------q~----~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
|+.|+-++.||.-- + ++ ++.|+|+|+..+ +.+|.++ +. |+ ...++..-++++|.
T Consensus 130 gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv-------ki--~d----~~agk~~~ef~~~e 196 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV-------KI--WD----LTAGKLSKEFKSHE 196 (825)
T ss_pred ccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee-------ee--ec----cccccccccccccc
Confidence 99999999999873 1 11 889999999998 5667888 77 99 77788887899999
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCC
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg 224 (1605)
. +|.+|-|||--=+|++||.|++||+||+.|++++--... -..||+|.+|.|||+.+.+|....
T Consensus 197 ~----------~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~----~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 197 G----------KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP----ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred c----------cccccccCchhhhhccCCCCceeeeeccceeEEeeccCC----ccCCceeeeecCCceeeecCchhh
Confidence 9 999999999999999999999999999999999954444 389999999999999999998654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=164.61 Aligned_cols=201 Identities=12% Similarity=0.129 Sum_probs=158.3
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeec
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd 90 (1605)
||-. +||+++|.-||..||+ |.|+++.+|.+..++.+-. -+|++.|.-++++|.....+++.+.|.+|++||
T Consensus 18 ~~~~----~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 18 GHVQ----KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhhh----cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5666 9999999999999999 9999999999998866655 789999999999998999999999999999999
Q ss_pred cCCCce-----------EEEeCCCccccc-cccCceeEecc-CCCc------------ceEE-------ecccccc----
Q 000378 91 FDTEQS-----------FVLHSPEKKMES-ISVDTEVHLAL-TPLQ------------PVVF-------FGFHRRM---- 134 (1605)
Q Consensus 91 ~~~~q~-----------~v~~sp~~~~~~-~s~d~~ih~a~-t~~~------------l~vw-------~~~~~~~---- 134 (1605)
+...+. .+.+||+|++++ ++.|..|-.=. ..-| -..| |-.-+.-
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 987533 889999999998 46664441111 0000 1112 2111100
Q ss_pred ----ceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEee
Q 000378 135 ----SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 210 (1605)
Q Consensus 135 ----s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af 210 (1605)
+-++|.++..|.. ---++.|+|+|..+|+||+|.++-|||++.-.-.=.+.. +.=+|+.+.|
T Consensus 174 LsypsLkpv~si~AH~s----------nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR----ldwpVRTlSF 239 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPS----------NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR----LDWPVRTLSF 239 (313)
T ss_pred EeccccccccccccCCc----------ceEEEEECCCCceEeeccccceeeccChhHhhhheeecc----ccCceEEEEe
Confidence 3355556666665 566778889999999999999999999998766657777 7889999999
Q ss_pred cCCceEEEEecCCCeEEeeecCC
Q 000378 211 HPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 211 ~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
|=||++|++||.|.-|-|=.|.+
T Consensus 240 S~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred ccCcceeeccCccceEEeEeccc
Confidence 99999999999999986655543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-15 Score=176.33 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=158.4
Q ss_pred CCCceeEeCCCcceeeeecCceEE-EEeccCCceeeeccCC-cceeeeeecCCCCceEEEEecC-CcEEeeccCCC----
Q 000378 22 LQPHEAAFHPNQALIAVAIGTYII-EFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILED-CTIRSCDFDTE---- 94 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~a~g~~I~-l~d~~tG~~~~~l~~~-~~v~~lA~SP~~g~~laa~~~D-~tI~~wd~~~~---- 94 (1605)
..|-|++||+--.+||++...-+. ||+.-.-..|-.+-++ -++..|+|+- .|+.||-||.- |-+-.|+..+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceee
Confidence 489999999999999997776666 9997766667778888 8899999998 78899999887 78889998876
Q ss_pred --c------eEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 95 --Q------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 95 --q------~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
| +|++|||||..++ +++|+-| |. |+ .+++.-.-|++-|++ .|+.+-|+
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKV-------Kv--Wn----~~SgfC~vTFteHts----------~Vt~v~f~ 401 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKV-------KV--WN----TQSGFCFVTFTEHTS----------GVTAVQFT 401 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcE-------EE--Ee----ccCceEEEEeccCCC----------ceEEEEEE
Confidence 2 2999999999999 5888999 77 99 888777779999999 99999999
Q ss_pred cCCCeEEEEecCceEEEEecccceEEEEEee-----------cccc-----------------------------ccccc
Q 000378 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-----------DNTI-----------------------------KLLGA 205 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~-----------~~~~-----------------------------~~~g~ 205 (1605)
-++.+|.++|-||+|||||+..|..-=|++. |++= |-+.|
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 9999999999999999999988876555554 2111 33367
Q ss_pred eeEeecCCceEEEEecCCCeEEeeecC
Q 000378 206 GAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 206 ~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.+++|+|+|..|++||=|.|+++|++=
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEee
Confidence 788899999999999999999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=165.76 Aligned_cols=202 Identities=14% Similarity=0.175 Sum_probs=168.5
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|++.+.-+|-.+.|-- -|.++||+-|...|.+ +.++-+++||...-.--+. -+|...|..+-|-- .-|.+.+
T Consensus 86 w~a~tgdelhsf~hkh----ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLS 160 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHKH----IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhh----eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEe
Confidence 8888888888887777 7999999999999999 8899999999764333332 67888888888876 4478888
Q ss_pred EecCCcEEeeccCCC---ce--------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCC
Q 000378 80 ILEDCTIRSCDFDTE---QS--------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~---q~--------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
..+|+|||+||..|. |+ +..+|+||+++-++-++.| +- |. .++..++--.
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV-------~F--wd----aksf~~lKs~------ 221 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSV-------KF--WD----AKSFGLLKSY------ 221 (334)
T ss_pred eccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCcee-------EE--ec----cccccceeec------
Confidence 899999999999985 22 8889999999988888888 55 87 7777666222
Q ss_pred cccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEE-eeccccccccceeEeecCCceEEEEecCCCeEE
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL-QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL-~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~ 227 (1605)
|+---|.+-..||+..+++.|.+|+.++-||.+||+.+-.. .+ |-..|-|+-|+||||.-++||.||||+
T Consensus 222 -----k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg----h~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 222 -----KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG----HFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred -----cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccC----CCCceEEEEECCCCceeeccCCCceEE
Confidence 23334788889999999999999999999999999999653 66 999999999999999999999999999
Q ss_pred eeecCCCCCe
Q 000378 228 AWDVSIERPS 237 (1605)
Q Consensus 228 ~W~vs~~~~~ 237 (1605)
|||+.+-.+.
T Consensus 293 lWQt~~~~~~ 302 (334)
T KOG0278|consen 293 LWQTTPGKTY 302 (334)
T ss_pred EEEecCCCch
Confidence 9999977665
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=173.40 Aligned_cols=193 Identities=17% Similarity=0.229 Sum_probs=147.8
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCce--eee---ccC--CcceeeeeecCCCCceEEEEecCCcE
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSR--IAS---IDI--NSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~--~~~---l~~--~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
||+- .|.+++|-|+|+.|++ |.|-+|+.||-. |-- ... |.. +-.+.+++||| .|+.|++.+-...+
T Consensus 165 hgtk----~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 165 HGTK----IVSALAVDPSGARFVSGSLDYTVKFWDFQ-GMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQA 238 (641)
T ss_pred CCce----EEEEeeecCCCceeeeccccceEEEEecc-cccccchhhhccCcccccccceeeecC-CCCeEEEEecCcce
Confidence 5666 8999999999999999 999999999954 321 111 332 45689999999 55577777778889
Q ss_pred EeeccCCCce------------------------EEEeCCCccccc--cccCceeEeccCCCcceEEeccccccceeEEe
Q 000378 87 RSCDFDTEQS------------------------FVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG 140 (1605)
Q Consensus 87 ~~wd~~~~q~------------------------~v~~sp~~~~~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vg 140 (1605)
|+.|++-.+. |..|+|+.+-+- .|.|+++ |. |++-.-.+-..|+-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl-------Ri--Wdv~~~k~q~qVik 309 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL-------RI--WDVNNTKSQLQVIK 309 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE-------EE--EecCCchhheeEEe
Confidence 9999986422 888999988665 4888999 98 87433333444444
Q ss_pred e-eecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccc--cceeEeecCCceEE
Q 000378 141 T-VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL--GAGAFAFHPTLEWL 217 (1605)
Q Consensus 141 t-~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~--g~~a~Af~P~g~~l 217 (1605)
| .+|+ .+-||++-||+||++++|.|-.||.|-+|+.-+-.+..+.-. ---|.. ++.|++||+||+.|
T Consensus 310 ~k~~~g---------~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v-k~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 310 TKPAGG---------KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV-KDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred eccCCC---------cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe-eeccCCCCceeEEEeccccchh
Confidence 4 2221 234999999999999999999999999999766665543322 112666 89999999999999
Q ss_pred EEecCCCeEEeeecC
Q 000378 218 FVGDRRGTLLAWDVS 232 (1605)
Q Consensus 218 ~~G~~dgtl~~W~vs 232 (1605)
++=+-|++|++||+.
T Consensus 380 lSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLR 394 (641)
T ss_pred hhccCCCceeeeecc
Confidence 999999999999998
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=157.83 Aligned_cols=192 Identities=19% Similarity=0.320 Sum_probs=152.5
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCc--eeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeec
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGS--RIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~--~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd 90 (1605)
||.- .|+++||||+|++||+ |+|.++.+|---.|. -+.+ -+|-.-|-.+|||+ +|..||..+.|.+|-.|.
T Consensus 59 ~hkr----sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 59 GHKR----SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWE 133 (312)
T ss_pred cchh----eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEE
Confidence 5666 8999999999999999 999999999855432 2333 68999999999999 999999999999999999
Q ss_pred cCC--C---------ce----EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccc
Q 000378 91 FDT--E---------QS----FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1605)
Q Consensus 91 ~~~--~---------q~----~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d 154 (1605)
.+- | ++ .|.++|-...+. .|=|.|| |. |.-+. ..+=.-+.|+.||..
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI-------k~--~~~~~-dddW~c~~tl~g~~~------- 196 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI-------KV--YRDED-DDDWECVQTLDGHEN------- 196 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE-------EE--EeecC-CCCeeEEEEecCccc-------
Confidence 983 2 22 888999777777 6889999 87 66222 334455779999999
Q ss_pred cCCCceEeeeecCCCeEEEEecCceEEEEe-------cccceEEEEEee----------c--------------ccccc-
Q 000378 155 LKKPIVNLACHPRLPVLYVAYADGLIRAYN-------IHTYAVHYTLQL----------D--------------NTIKL- 202 (1605)
Q Consensus 155 ~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~-------i~t~~v~~tL~~----------~--------------~~~~~- 202 (1605)
-|++++|+|.|.-|++++.|++||+|- +|.+++ |.+-- | |++|+
T Consensus 197 ---TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~-Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~ 272 (312)
T KOG0645|consen 197 ---TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRAL-YDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLL 272 (312)
T ss_pred ---eEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccce-EeeeecccceEeccCCCEEEEEEecCCCCCchHHHH
Confidence 899999999999999999999999998 444432 32222 2 22222
Q ss_pred --------ccceeEeecCC-ceEEEEecCCCeEEeeecC
Q 000378 203 --------LGAGAFAFHPT-LEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 203 --------~g~~a~Af~P~-g~~l~~G~~dgtl~~W~vs 232 (1605)
.-|.++++.|. .-.|++|++||++++|.+-
T Consensus 273 ~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 273 AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 24679999995 6778899999999999863
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-12 Score=149.11 Aligned_cols=518 Identities=18% Similarity=0.192 Sum_probs=311.3
Q ss_pred ceeEeCCCcceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-Cce------
Q 000378 25 HEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT-EQS------ 96 (1605)
Q Consensus 25 ~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~-~q~------ 96 (1605)
--+.=.|-|.-++=-.|+.|++-+...+....+ .+|..+|+=--||| .|-.||+|..-|+||.||... ++.
T Consensus 22 ~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~ 100 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQ 100 (603)
T ss_pred eEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeee
Confidence 345667889999889999999999998888888 99999999999999 799999999999999999987 322
Q ss_pred -------EEEeCCCccccccccCce---eE----------------------eccCCCcceEEeccccccceeEEeeeec
Q 000378 97 -------FVLHSPEKKMESISVDTE---VH----------------------LALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1605)
Q Consensus 97 -------~v~~sp~~~~~~~s~d~~---ih----------------------~a~t~~~l~vw~~~~~~~s~~~vgt~eG 144 (1605)
-+.+++|++-|++..+|. +| ++|.|.|| |+-+-.- +-..|.-+||
T Consensus 101 v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP--fRi~T~s-dDn~v~ffeG 177 (603)
T KOG0318|consen 101 VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP--FRIATGS-DDNTVAFFEG 177 (603)
T ss_pred ecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc--eEEEecc-CCCeEEEeeC
Confidence 778889999888644422 22 45566666 5511111 1122223443
Q ss_pred CCCCcccc---cccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEec
Q 000378 145 GRAPTKIK---TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 145 ~~~~~~ik---~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~ 221 (1605)
+|-|.| .+|.|=|.++-|+|||...++++.||.|-+||-.||+-.+-|.. .--|-+++.|++++||+.-+++-|
T Consensus 178 --PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 178 --PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred --CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEec
Confidence 667776 58999999999999999999999999999999999999988873 444999999999999999999999
Q ss_pred CCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCcccccccccCCccccccceeeccCCCcceecCCccccccccc
Q 000378 222 RRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHP 301 (1605)
Q Consensus 222 ~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~~~il~~~~g~~vyp~p~~~~~~~h~ 301 (1605)
.|.|+++|||++. +++ +-| +|-.. || +|-...|.+=-++..+-+-=
T Consensus 255 aDkt~KIWdVs~~--slv------~t~-----------~~~~~------v~---------dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 255 ADKTIKIWDVSTN--SLV------STW-----------PMGST------VE---------DQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred CCceEEEEEeecc--ceE------EEe-----------ecCCc------hh---------ceEEEEEEeCCeEEEEEcCc
Confidence 9999999999976 221 211 11111 11 12222333322222222111
Q ss_pred ccchhhhhhhhccCCccccchhhHhHhhhhHHHHHHhhccCCchHHHHhhhccCCCcccccchHHHHHHHHHHhcCCcce
Q 000378 302 RLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 381 (1605)
Q Consensus 302 ~~n~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s~~~~~~~~l~~~~s~g~~~~h~~q~~~~~~~~~~~~~~ 381 (1605)
-+|+-- ++|.-=.+...-|.|+-..|
T Consensus 301 ~in~ln------------------------------------------------------~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 301 TINYLN------------------------------------------------------PSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred EEEEec------------------------------------------------------ccCCChhheecccccceeEE
Confidence 111100 11111111122355666677
Q ss_pred eehhhhHHHhhhccccccccCCCCCcccceEEeecCCCCCCCCCccccccccccccccCCceeeeee----eEEEE-eCc
Q 000378 382 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPV----RAFYV-DGI 456 (1605)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~~~~~~p~~~l~~~~~~d~~~~~~d~pv~~~~h~eln~f~~dngvl~fp~----~afyi-~g~ 456 (1605)
|.+.=. -+||+-=.|||--. -|.+-..-| ++.---| .|+|.-+.. ..|.+ -+-
T Consensus 327 tv~~d~--~~i~SgsyDG~I~~-----------W~~~~g~~~-~~~g~~h--------~nqI~~~~~~~~~~~~t~g~Dd 384 (603)
T KOG0318|consen 327 TVSPDG--KTIYSGSYDGHINS-----------WDSGSGTSD-RLAGKGH--------TNQIKGMAASESGELFTIGWDD 384 (603)
T ss_pred EEcCCC--CEEEeeccCceEEE-----------EecCCcccc-ccccccc--------cceEEEEeecCCCcEEEEecCC
Confidence 777655 45555556776322 222111111 1000112 234433333 23444 344
Q ss_pred eEEEEecccCcccceeeccccCCCCccccccccccccccceEEEEEeecCceeEEEEEEeccCccccCCCCccccCCceE
Q 000378 457 NLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAA 536 (1605)
Q Consensus 457 nL~aynL~sG~~s~~~sL~~~i~G~~~~~pk~l~ys~~~~~fLV~~e~~g~t~elvl~r~~~~ak~~~skg~~~~G~dA~ 536 (1605)
.|+-.++.-+...-.... ....+|+-+--++.....+|++. .+|+|+++....-+ ...+ .-.+|+
T Consensus 385 ~l~~~~~~~~~~t~~~~~------~lg~QP~~lav~~d~~~avv~~~-----~~iv~l~~~~~~~~-~~~~---y~~s~v 449 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVV------KLGSQPKGLAVLSDGGTAVVACI-----SDIVLLQDQTKVSS-IPIG---YESSAV 449 (603)
T ss_pred eEEEEecccCccccccee------ecCCCceeEEEcCCCCEEEEEec-----CcEEEEecCCccee-eccc---cccceE
Confidence 556555543333222211 24567887777766544444431 36888887544322 2233 345777
Q ss_pred EECCCCCeEEEEeCCCCeEEEEEcCCcchhhhccccCccccCCCCCCCCCCcccCCcccccccccccccccCccceeEEe
Q 000378 537 FIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFA 616 (1605)
Q Consensus 537 FIG~nd~qfAILd~dg~~l~Vy~l~~~~~~~~~~~~~~v~~~~~~~~~~~~s~kgP~~f~f~~~V~riFsTPl~~vL~f~ 616 (1605)
-+-++.+-+||=.+|++ |-||.|++....+- ..+ ..-+|| ++. +=|.
T Consensus 450 Av~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee----~~~-----------~~h~a~--------iT~---------vayS 496 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGK-VHVYSLSGDELKEE----AKL-----------LEHRAA--------ITD---------VAYS 496 (603)
T ss_pred EEcCCCCEEEEecccce-EEEEEecCCcccce----eee-----------ecccCC--------ceE---------EEEC
Confidence 78888788999999999 99999998654221 111 222333 444 6677
Q ss_pred ccCCeEEEEeeccccccCcC-ccceeeeccCCeeeeeecCCCcEEEEEeccccCccEEEEEe-cceEEEEe--cccchhh
Q 000378 617 CDGDQIGMAKLVQGYRLSAR-AGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLT-TQRVLIVS--ADLDILA 692 (1605)
Q Consensus 617 ~~g~~I~~sKl~~g~rlsts-~~~~i~tk~e~k~~~~L~~nE~V~qV~WQ~~~~g~vaAILT-~qRVlIvn--anL~ii~ 692 (1605)
.+|.-|-.+ +.+-+ ..|++..+ |-+..--+.-..+|.-|.|+.+.. ..|==+ ...|+|-+ +-.+.
T Consensus 497 pd~~yla~~------Da~rkvv~yd~~s~-~~~~~~w~FHtakI~~~aWsP~n~--~vATGSlDt~Viiysv~kP~~~-- 565 (603)
T KOG0318|consen 497 PDGAYLAAG------DASRKVVLYDVASR-EVKTNRWAFHTAKINCVAWSPNNK--LVATGSLDTNVIIYSVKKPAKH-- 565 (603)
T ss_pred CCCcEEEEe------ccCCcEEEEEcccC-ceecceeeeeeeeEEEEEeCCCce--EEEeccccceEEEEEccChhhh--
Confidence 777777776 22333 67777777 223333333345699999998844 222111 22333332 22222
Q ss_pred cccccCCCCCCCcceeeeccceeEeech
Q 000378 693 SSSTKFDKGLPSFRSLLWVGPALLFSTA 720 (1605)
Q Consensus 693 s~~~~~~~g~~~IkS~~W~gpaLLyST~ 720 (1605)
+.-+.-|-.- +.++.|+...-|-||-
T Consensus 566 -i~iknAH~~g-Vn~v~wlde~tvvSsG 591 (603)
T KOG0318|consen 566 -IIIKNAHLGG-VNSVAWLDESTVVSSG 591 (603)
T ss_pred -eEeccccccC-ceeEEEecCceEEecc
Confidence 1111222333 8899999544444443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=173.22 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=165.5
Q ss_pred ccccc-ccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQ-HLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~-~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|.+.. ..-||+. ||.- .|..++|+.+|.-+-+ |.|++|++||+.||..+.....+-.+.-+-|.|++-|++++
T Consensus 242 W~vy~~~~~lrtf~gH~k----~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 242 WNVYDDRRCLRTFKGHRK----PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLV 317 (503)
T ss_pred EEEecCcceehhhhcchh----hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEE
Confidence 55555 4678888 9999 9999999999998888 99999999999999999999999999999999966699999
Q ss_pred EecCCcEEeeccCCC---ce---------EEEeCCCcccccc-ccCceeE-----------------------eccCCCc
Q 000378 80 ILEDCTIRSCDFDTE---QS---------FVLHSPEKKMESI-SVDTEVH-----------------------LALTPLQ 123 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~---q~---------~v~~sp~~~~~~~-s~d~~ih-----------------------~a~t~~~ 123 (1605)
|..|+.|+.||+-+. |. .+.|-|+|+..-. |.|+++- |++.|-.
T Consensus 318 G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~ 397 (503)
T KOG0282|consen 318 GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG 397 (503)
T ss_pred ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC
Confidence 999999999999885 22 7889999988764 5556661 2233333
Q ss_pred ceEEeccccccceeEEe--------------eeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccce
Q 000378 124 PVVFFGFHRRMSVTVVG--------------TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1605)
Q Consensus 124 l~vw~~~~~~~s~~~vg--------------t~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~ 189 (1605)
. ||..-- -...++ .+|||+.+- ==..+.|||||.+|++|+.||.+-+||-.|-.
T Consensus 398 ~--~~~aQs--~dN~i~ifs~~~~~r~nkkK~feGh~vaG--------ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 398 K--WFAAQS--MDNYIAIFSTVPPFRLNKKKRFEGHSVAG--------YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred C--eehhhc--cCceEEEEecccccccCHhhhhcceeccC--------ceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 3 331110 011111 244444410 02468899999999999999999999999999
Q ss_pred EEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEeee
Q 000378 190 VHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWD 230 (1605)
Q Consensus 190 v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~ 230 (1605)
...+|+. |...+..+.|||...-.+ +++-||.|++|+
T Consensus 466 l~~~lka----h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLKA----HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhcccc----CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999 999999999999987655 999999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=164.06 Aligned_cols=200 Identities=19% Similarity=0.215 Sum_probs=167.6
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|++.+++-||+- ||=- .|.|++.||+-..|++ +-|++|++||.+|-..+.+ .+|..+|.++.+.|+|+ -|++
T Consensus 220 wDLe~nkvIR~YhGHlS----~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit 294 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLS----GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVIT 294 (460)
T ss_pred EechhhhhHHHhccccc----eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-ceEE
Confidence 999999999999 8888 9999999999999999 9999999999998888888 78999999999999999 4679
Q ss_pred EecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 80 ILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
++.|.||||||+...++ |++-+|.--+.| .|.| .| +- |. .-.+..+++++||.
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-ni-------k~--w~----~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NI-------KQ--WK----LPEGEFLQNLSGHN 360 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cc-------ee--cc----CCccchhhcccccc
Confidence 99999999999998766 555556666665 4555 55 66 77 77888998999999
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceE---EEEEeecccc-ccccceeEeecCCceEEEEecC
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV---HYTLQLDNTI-KLLGAGAFAFHPTLEWLFVGDR 222 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v---~~tL~~~~~~-~~~g~~a~Af~P~g~~l~~G~~ 222 (1605)
+ =|.+|+...|+ ||++|++.|+|-+||-.+|-. .-|.-.-.++ .-.|+.|-.|--+|--|.+|..
T Consensus 361 ~----------iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 361 A----------IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred c----------eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC
Confidence 9 88888888665 899999999999999877632 2122111122 2358889999999999999999
Q ss_pred CCeEEeeecC
Q 000378 223 RGTLLAWDVS 232 (1605)
Q Consensus 223 dgtl~~W~vs 232 (1605)
|.||++|-=+
T Consensus 430 dKtIk~~keD 439 (460)
T KOG0285|consen 430 DKTIKMYKED 439 (460)
T ss_pred CcceEEEecc
Confidence 9999999766
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=167.64 Aligned_cols=197 Identities=18% Similarity=0.184 Sum_probs=156.9
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeecc--CCcceeeeeecCCCCceEEEEecCCcEEeecc
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASID--INSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~--~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~ 91 (1605)
||.. .|..+.||||.+.|.+ +.+.-+.+||+.||-...... ++.+|.+.||-| ||..+|+|+.|++|.-||+
T Consensus 267 gh~~----~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 267 GHSQ----PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred cccC----ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecC
Confidence 9999 9999999999999988 999999999999999988844 559999999999 9988999999999999999
Q ss_pred CCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcc--cccccC
Q 000378 92 DTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK--IKTDLK 156 (1605)
Q Consensus 92 ~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~--ik~d~k 156 (1605)
|-+-. +++-++||++.- ...|..| ++ ++ +-++.-+|.++-|.+-|. |-.|-|
T Consensus 342 Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i-------~l--~~----~e~~~dr~lise~~~its~~iS~d~k 408 (519)
T KOG0293|consen 342 DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKI-------RL--YN----REARVDRGLISEEQPITSFSISKDGK 408 (519)
T ss_pred CcchhhcccccccceeEEEEEcCCCcEEEEEecccce-------ee--ec----hhhhhhhccccccCceeEEEEcCCCc
Confidence 87411 889999999876 3677777 55 44 444444433333333222 223333
Q ss_pred CCceEeeee--------------------------------cCCCeEEEEecCceEEEEecccceEEEEEeecccccccc
Q 000378 157 KPIVNLACH--------------------------------PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204 (1605)
Q Consensus 157 kpV~~LA~~--------------------------------P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g 204 (1605)
--++||+++ -+..+++|||+|+.|++||-.+|..+-+|.+ |.--
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG----Hs~~ 484 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG----HSKT 484 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC----Ccce
Confidence 334444322 3457899999999999999999999999999 9999
Q ss_pred ceeEeecCC-ceEEEEecCCCeEEeeecCC
Q 000378 205 AGAFAFHPT-LEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 205 ~~a~Af~P~-g~~l~~G~~dgtl~~W~vs~ 233 (1605)
|.++|+.|. -+++|++++||||+||-.+.
T Consensus 485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999996 56777999999999998773
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=162.28 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=156.9
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEecc---------------CCc---eeee-ccCCcceeeeeecCCCCceEEEEec
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTL---------------TGS---RIAS-IDINSPVVRMAYSPTSGHAVVAILE 82 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~---------------tG~---~~~~-l~~~~~v~~lA~SP~~g~~laa~~~ 82 (1605)
.++|++|||||.++|+ |.|+.||++|+. |.. .|++ -+|-..|.-|.|-| .-++|++|+.
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILiS~sr 192 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILISGSR 192 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheEEeccC
Confidence 7899999999999999 999999999986 333 3666 89999999999999 7789999999
Q ss_pred CCcEEeeccCCC---ce-----------EEEeCCCccccccccC-ceeEeccCCCcceEEeccccccceeEEe---eeec
Q 000378 83 DCTIRSCDFDTE---QS-----------FVLHSPEKKMESISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVG---TVEG 144 (1605)
Q Consensus 83 D~tI~~wd~~~~---q~-----------~v~~sp~~~~~~~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vg---t~eG 144 (1605)
|+|||++|+.-- +. |+-|+|-|+.+.+..| -++ |+ ++ .++..--- .=.+
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~-------rl--Yd----v~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL-------RL--YD----VNTYQCFVSANPDDQ 259 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce-------eE--Ee----ccceeEeeecCcccc
Confidence 999999999752 11 9999999999998888 444 55 55 44332211 2467
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccc-ccceeEeecCCceEEEEecCC
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL-LGAGAFAFHPTLEWLFVGDRR 223 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~-~g~~a~Af~P~g~~l~~G~~d 223 (1605)
|++ .|.++-+|+-+..-++||-||-||+||-.++.-+-|+.. -|. .-|.+.-|.-+|+.|.+.+.|
T Consensus 260 ht~----------ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~---AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 260 HTG----------AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN---AHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred ccc----------ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh---hcCCceeeeEEEccCCeEEeecCCc
Confidence 777 999999999999999999999999999888776534332 122 357789999999999999999
Q ss_pred CeEEeeecCCCCCeee
Q 000378 224 GTLLAWDVSIERPSMI 239 (1605)
Q Consensus 224 gtl~~W~vs~~~~~m~ 239 (1605)
-+++||.+++.|+-.-
T Consensus 327 S~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKE 342 (430)
T ss_pred ceeeeeeecCCceEEE
Confidence 9999999999998543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-15 Score=166.33 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=164.0
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-----
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----- 96 (1605)
.|-|+-.- |++++--.-|++|++||..+=....+ .+|..+|--+-|-- .+|++|+.|.||+.||..|+.+
T Consensus 199 gVYClQYD-D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 199 GVYCLQYD-DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred ceEEEEec-chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHh
Confidence 67777763 44444338899999999886666666 99999999999965 6999999999999999999644
Q ss_pred ----EEEeC--CCccccccccCceeEeccCCCcceEEeccccccceeEEe---eeecCCCCcccccccCCCceEeeeecC
Q 000378 97 ----FVLHS--PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG---TVEGGRAPTKIKTDLKKPIVNLACHPR 167 (1605)
Q Consensus 97 ----~v~~s--p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vg---t~eG~~~~~~ik~d~kkpV~~LA~~P~ 167 (1605)
.|+|- .+|-|+.-|.|.+| + ||. ..+...+. .+-||++ .|..+-|+-.
T Consensus 275 hHceaVLhlrf~ng~mvtcSkDrsi-------a--VWd----m~sps~it~rrVLvGHrA----------aVNvVdfd~k 331 (499)
T KOG0281|consen 275 HHCEAVLHLRFSNGYMVTCSKDRSI-------A--VWD----MASPTDITLRRVLVGHRA----------AVNVVDFDDK 331 (499)
T ss_pred hhcceeEEEEEeCCEEEEecCCcee-------E--EEe----ccCchHHHHHHHHhhhhh----------heeeeccccc
Confidence 45544 57777777999999 4 598 55555442 2789999 9999999654
Q ss_pred CCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC-----------CC-
Q 000378 168 LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-----------ER- 235 (1605)
Q Consensus 168 ~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~-----------~~- 235 (1605)
.+++||-|++||.|++.|++-.-||-+ |--|+-|+-|. |+.+++||.|.||++||++- +-
T Consensus 332 --yIVsASgDRTikvW~~st~efvRtl~g----HkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv 403 (499)
T KOG0281|consen 332 --YIVSASGDRTIKVWSTSTCEFVRTLNG----HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 403 (499)
T ss_pred --eEEEecCCceEEEEeccceeeehhhhc----ccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhh
Confidence 999999999999999999999999999 99999999995 89999999999999999872 11
Q ss_pred --------Ceeee-eccceeEEEEEEeeCCCCCc
Q 000378 236 --------PSMIG-MDGSLQVWKTRVIINPNRPP 260 (1605)
Q Consensus 236 --------~~m~g-~~g~~~~w~~rv~~~~~~~~ 260 (1605)
-...| .||.++||..--.++|.-|.
T Consensus 404 RciRFd~krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 404 RCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred hheeecCceeeeccccceEEEEecccccCCcccc
Confidence 11222 28999999998888885543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=170.25 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=153.6
Q ss_pred CCce-eEeCCCcce-eee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-----
Q 000378 23 QPHE-AAFHPNQAL-IAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT----- 93 (1605)
Q Consensus 23 ~v~~-~aF~P~gal-lA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~----- 93 (1605)
.+.+ +||-+..+. |.+ +-|+.|.+|...++.-+-+ .+|-..|++++--- ++ +|++||+|+|.|.|=...
T Consensus 59 ~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~~~l~~~l 136 (745)
T KOG0301|consen 59 FIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRIGELVYSL 136 (745)
T ss_pred eeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cC-ceEecccccceEEecchhhhccc
Confidence 3444 888875553 444 9999999999999999988 99999999998543 33 599999999999997654
Q ss_pred --Cce---EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC
Q 000378 94 --EQS---FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1605)
Q Consensus 94 --~q~---~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~ 168 (1605)
|+. .|+.-|+++++.+|+|.+| |+ |+ ..+.+.||.||.+ =||+||+-|++
T Consensus 137 ~gH~asVWAv~~l~e~~~vTgsaDKtI-------kl--Wk------~~~~l~tf~gHtD----------~VRgL~vl~~~ 191 (745)
T KOG0301|consen 137 QGHTASVWAVASLPENTYVTGSADKTI-------KL--WK------GGTLLKTFSGHTD----------CVRGLAVLDDS 191 (745)
T ss_pred CCcchheeeeeecCCCcEEeccCccee-------ee--cc------CCchhhhhccchh----------heeeeEEecCC
Confidence 222 8899999999999999999 99 99 3677889999999 99999999998
Q ss_pred CeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 169 PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 169 ~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.+| |++.||.||+|++ +|++++..-+ |...+.++...++.+.+++.+.|+|+++|...
T Consensus 192 ~fl-ScsNDg~Ir~w~~-~ge~l~~~~g----htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 192 HFL-SCSNDGSIRLWDL-DGEVLLEMHG----HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CeE-eecCCceEEEEec-cCceeeeeec----cceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 765 7788999999999 9999999999 99999999988888889999999999999987
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-14 Score=159.83 Aligned_cols=202 Identities=18% Similarity=0.234 Sum_probs=164.2
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeec-CCCC-ceEEEEecCCcEEeeccCCCce--
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYS-PTSG-HAVVAILEDCTIRSCDFDTEQS-- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~S-P~~g-~~laa~~~D~tI~~wd~~~~q~-- 96 (1605)
.|.++--. +++|.+ +.|+.+++||.. |+.+-. .+|++++-++++= +++. ..+++++.|.||+||-++-+..
T Consensus 107 WVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 107 WVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred hhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 55555444 677777 999999999954 655555 9999999877764 4333 5899999999999999987422
Q ss_pred --------------EEEeCCCccccc-cccCceeEeccCCCcceEEecccc------------------c----cceeEE
Q 000378 97 --------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHR------------------R----MSVTVV 139 (1605)
Q Consensus 97 --------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~------------------~----~s~~~v 139 (1605)
||.-+++|.+.. +|-|+++ +. |+ +.. + .++.++
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l-------ki--Ws-~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML-------KI--WS-VETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred hHHhHhcccccceeEEEecCCCCeEEeeccccee-------ee--cc-cCCCccccccccchhhhhhhhhhhcccccCce
Confidence 888889998876 7999999 77 77 111 1 156777
Q ss_pred eeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEE
Q 000378 140 GTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFV 219 (1605)
Q Consensus 140 gt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~ 219 (1605)
-|++||++ ||-++-|++ ..++||+|||.+||-||+.+|..+-++.. --...+++++|....|++
T Consensus 254 vtl~GHt~----------~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-----~ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 254 VTLEGHTE----------PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-----NKSLNCISYSPLSKLLAS 317 (423)
T ss_pred EEeccccc----------ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-----CcceeEeecccccceeee
Confidence 78999999 999999998 99999999999999999999999977776 234569999999999999
Q ss_pred ecCCCeEEeeecCCCCCeeeee---------------------------ccceeEEEEEEe
Q 000378 220 GDRRGTLLAWDVSIERPSMIGM---------------------------DGSLQVWKTRVI 253 (1605)
Q Consensus 220 G~~dgtl~~W~vs~~~~~m~g~---------------------------~g~~~~w~~rv~ 253 (1605)
|+.|.-|++||=-+...+|.-. ||++.+|-+|-.
T Consensus 318 gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 9999999999987777776544 799999999943
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=167.46 Aligned_cols=179 Identities=19% Similarity=0.252 Sum_probs=148.3
Q ss_pred eeEeCCCcceeeeecCceEEEEeccCCceeeeccC-CcceeeeeecCCCCceEEEEecCCcEEeeccCCC-ce-------
Q 000378 26 EAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI-NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-QS------- 96 (1605)
Q Consensus 26 ~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~-~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q~------- 96 (1605)
=+.|| .+..||||.|+.|.+|++.+|.....-+. ...|.++.|+| +|..||+|..|++|.+||..+. ++
T Consensus 182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 35677 67799999999999999999997777333 89999999999 9999999999999999998773 22
Q ss_pred -----EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeE
Q 000378 97 -----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1605)
Q Consensus 97 -----~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL 171 (1605)
|++.+ +...+.++.|+.| .+|. -|..-..++++.||+- -|-.|++++|+..|
T Consensus 260 ~~rvg~laW~-~~~lssGsr~~~I---------~~~d---vR~~~~~~~~~~~H~q----------eVCgLkws~d~~~l 316 (484)
T KOG0305|consen 260 ASRVGSLAWN-SSVLSSGSRDGKI---------LNHD---VRISQHVVSTLQGHRQ----------EVCGLKWSPDGNQL 316 (484)
T ss_pred CceeEEEecc-CceEEEecCCCcE---------EEEE---Eecchhhhhhhhcccc----------eeeeeEECCCCCee
Confidence 66666 4444446777777 2233 2333344446889999 99999999999999
Q ss_pred EEEecCceEEEEecccceEEEEEeeccccccccceeEeecCC-ceEEEEec--CCCeEEeeecCC
Q 000378 172 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-LEWLFVGD--RRGTLLAWDVSI 233 (1605)
Q Consensus 172 ~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~-g~~l~~G~--~dgtl~~W~vs~ 233 (1605)
|||+.|+.+.+||.++-.+++++.. |.+-|-|+||+|- ...||+|+ .|++|++|++.+
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~~~~----H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFTFTE----HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred ccCCCccceEeccCCCccccEEEec----cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 9999999999999999999999999 9999999999995 55777654 999999999983
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=160.71 Aligned_cols=199 Identities=17% Similarity=0.249 Sum_probs=167.4
Q ss_pred CCCCceeEeCCCcceeeee-cCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEE
Q 000378 21 PLQPHEAAFHPNQALIAVA-IGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~a-~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v 98 (1605)
|-.|+|++=+|+|-+|+.+ +-+.|-+|...||..+.+ ..|--+|.-|-||- ||..+++|+.||.|+.|++ +-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l-----~~ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLL-----TD 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEE-----Ee
Confidence 4469999999999999997 999999999999999999 89999999999999 8889999999999999999 66
Q ss_pred EeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee--cCCCeEEEEec
Q 000378 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH--PRLPVLYVAYA 176 (1605)
Q Consensus 99 ~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~--P~~~vL~~a~~ 176 (1605)
+++++.. ..+ +| .+ .+.+|+= ||+.|-+. +-.+.||++|.
T Consensus 155 lv~a~~~-------~~~-------~p--~~------------~f~~Htl----------sITDl~ig~Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 155 LVSADND-------HSV-------KP--LH------------IFSDHTL----------SITDLQIGSGGTNARLYTASE 196 (476)
T ss_pred ecccccC-------CCc-------cc--ee------------eeccCcc----------eeEEEEecCCCccceEEEecC
Confidence 6665544 123 33 12 2335555 99999998 56789999999
Q ss_pred CceEEEEecccceEEEEEeeccccccc-----------------------------------------------------
Q 000378 177 DGLIRAYNIHTYAVHYTLQLDNTIKLL----------------------------------------------------- 203 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~~tL~~~~~~~~~----------------------------------------------------- 203 (1605)
|++||+||+..|..+-|+..|-+||+.
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred CceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 999999999999999999888888876
Q ss_pred --cceeEeecCCceEEEEecCCCeEEeeecC----CCCCe-eeeeccceeE---EEEEEeeCCCCCcccc
Q 000378 204 --GAGAFAFHPTLEWLFVGDRRGTLLAWDVS----IERPS-MIGMDGSLQV---WKTRVIINPNRPPMQA 263 (1605)
Q Consensus 204 --g~~a~Af~P~g~~l~~G~~dgtl~~W~vs----~~~~~-m~g~~g~~~~---w~~rv~~~~~~~~~~a 263 (1605)
.|.|+|.+=||-.|++||+||++++||+. .-+=. |-|---+||. ||+-...+-++|.|..
T Consensus 277 ~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~ 346 (476)
T KOG0646|consen 277 ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPN 346 (476)
T ss_pred CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCc
Confidence 35599999999999999999999999998 22222 6777778998 9888877777777654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-14 Score=156.22 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=161.3
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccC
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
||.+ +|-.+-|.+|+..|.+ +-|++|..||+.||+++.- ..|...|++|+=+--+-..|.+++.|+|+|+||.-
T Consensus 88 gHsg----AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 88 GHSG----AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred cccc----eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 8999 9999999999999999 9999999999999999999 88999999999332122889999999999999998
Q ss_pred ------C-----CceEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCce
Q 000378 93 ------T-----EQSFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV 160 (1605)
Q Consensus 93 ------~-----~q~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~ 160 (1605)
| ++++|.|..++.... +.-|+.| |- |. .--....-+++||++ ||+
T Consensus 164 ~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i-------kv--Wd----~r~~d~~~~lsGh~D----------tIt 220 (338)
T KOG0265|consen 164 KKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI-------KV--WD----LRKNDGLYTLSGHAD----------TIT 220 (338)
T ss_pred ccchhhccccceeEEEEEecccccceeeccccCce-------ee--ec----cccCcceEEeecccC----------cee
Confidence 3 255999998887665 5778888 66 98 433344457999999 999
Q ss_pred EeeeecCCCeEEEEecCceEEEEecccceEEEE-Eee-ccccccccce--eEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT-LQL-DNTIKLLGAG--AFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~t-L~~-~~~~~~~g~~--a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
+|..+|++-.|-+=|-|.++|.||+.-+++.+. +.+ ...+|..... ..+.+|++.-+..|+.|+-+.+||...-
T Consensus 221 ~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 221 GLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 999999999999999999999999999888775 443 1233444333 4578999999999999999999997643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=153.60 Aligned_cols=250 Identities=17% Similarity=0.221 Sum_probs=192.2
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeecc
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~ 91 (1605)
||.+ -|.++.|||+|-.||+ +.|+.|.||++-..|+=-- .+|.+.|--+-|.+ ||..|++.+.|.||+.||.
T Consensus 45 gh~g----eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 45 GHKG----EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCcc----eEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEec
Confidence 7777 8999999999999999 9999999999887776554 79999999999999 8889999999999999999
Q ss_pred CCCce-----------EEEeCCCcc---ccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccC
Q 000378 92 DTEQS-----------FVLHSPEKK---MES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLK 156 (1605)
Q Consensus 92 ~~~q~-----------~v~~sp~~~---~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~k 156 (1605)
.|++. -+++ |-.+ ++. +|.|+|+ |+ |+ .-+...+.|+|. |
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~-------kl--~D----~R~k~~~~t~~~-----------k 174 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTL-------KL--WD----IRKKEAIKTFEN-----------K 174 (338)
T ss_pred ccceeeehhccccceeeecC-ccccCCeEEEecCCCceE-------EE--Ee----ecccchhhcccc-----------c
Confidence 99755 1222 4443 333 5888999 88 88 444444544432 4
Q ss_pred CCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCC
Q 000378 157 KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~ 236 (1605)
-++.++.|.-.+--..+|.-|+.|+.||+-.....|+|.+ |...|..+.-+|+|.-+-+=+-|.|+++||+-+--|
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG----h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG----HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeec----ccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 4799999999999999999999999999999999999999 999999999999999999999999999999986555
Q ss_pred ee--eee-cc---ceeEEEEEEeeCCCCCcccccccccCCccccccceeeccCCCcceecCCc----ccccccccccch
Q 000378 237 SM--IGM-DG---SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPR----VRALEVHPRLNL 305 (1605)
Q Consensus 237 ~m--~g~-~g---~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~~~il~~~~g~~vyp~p~----~~~~~~h~~~n~ 305 (1605)
+- +.| .| +.+-=..|+--.||..-.-|-+- +..+ -|+.-++-..+|=||- |..+-|||+--+
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~-----dr~v--yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA-----DRFV--YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccc-----cceE--EEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence 42 344 22 22222335555566544333321 1111 2455667778899986 556778887543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=145.10 Aligned_cols=231 Identities=12% Similarity=0.123 Sum_probs=143.3
Q ss_pred ccccccCCCCCCCCCceeEeCCCcceeeee--cCceEEEEecc-CCcee--eeccCCcceeeeeecCCCCceEEEEe-cC
Q 000378 10 DLRHVGRGDHKPLQPHEAAFHPNQALIAVA--IGTYIIEFDTL-TGSRI--ASIDINSPVVRMAYSPTSGHAVVAIL-ED 83 (1605)
Q Consensus 10 ~l~~~g~~~~~~~~v~~~aF~P~gallA~a--~g~~I~l~d~~-tG~~~--~~l~~~~~v~~lA~SP~~g~~laa~~-~D 83 (1605)
.++++..++ .++.++|||||++|+++ -+..|..||.. +|+.. ...........|+|+| +|+.|.+.+ .|
T Consensus 27 ~~~~~~~~~----~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~ 101 (330)
T PRK11028 27 LLQVVDVPG----QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNA 101 (330)
T ss_pred eeeEEecCC----CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCC
Confidence 445554455 78999999999998773 36889999986 55532 2234445678999999 666666655 48
Q ss_pred CcEEeeccCC-C---c-----------eEEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 84 CTIRSCDFDT-E---Q-----------SFVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 84 ~tI~~wd~~~-~---q-----------~~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
+.|..||+++ + + .+++++|+|+.+-+ ..+++| +||. ..+...+ ..+.
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v---------~v~d----~~~~g~l---~~~~ 165 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRI---------RLFT----LSDDGHL---VAQE 165 (330)
T ss_pred CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEE---------EEEE----ECCCCcc---cccC
Confidence 9999999973 1 0 16678999988853 334666 5577 3221111 1000
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEEec-CceEEEEeccc--ceE--EEEEeecc-c-cccccceeEeecCCceEEEE
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHT--YAV--HYTLQLDN-T-IKLLGAGAFAFHPTLEWLFV 219 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~-dg~IR~w~i~t--~~v--~~tL~~~~-~-~~~~g~~a~Af~P~g~~l~~ 219 (1605)
. ..++.....-.+.++||||++.||++.+ ++.|++||+.. ++. .-++..=+ . -+-.....++|||||++|+|
T Consensus 166 ~-~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 166 P-AEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred C-CceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 0 0000111123578999999999999987 99999999983 433 22332100 0 01111235899999999999
Q ss_pred ecC-CCeEEeeecCCCC--CeeeeeccceeEEEEEEeeCCCCCcccc
Q 000378 220 GDR-RGTLLAWDVSIER--PSMIGMDGSLQVWKTRVIINPNRPPMQA 263 (1605)
Q Consensus 220 G~~-dgtl~~W~vs~~~--~~m~g~~g~~~~w~~rv~~~~~~~~~~a 263 (1605)
+.+ +++|.+|++.... -..+|.-..- .|-.-+.++|+..-+-+
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEE
Confidence 875 7999999997543 3445541110 11123456666655543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=157.70 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=161.6
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceee------------------------
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIA------------------------ 56 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~------------------------ 56 (1605)
|+..- ..++++ .|.+ +|-++-|.-+|-+|++ ++|++|++||+.||....
T Consensus 262 w~~~G-~l~~tl~~Hkg----PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~ 336 (524)
T KOG0273|consen 262 WNKDG-NLISTLGQHKG----PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSS 336 (524)
T ss_pred EecCc-hhhhhhhccCC----ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecC
Confidence 44444 456666 6888 8999999999999999 999999999998774321
Q ss_pred ---------------e---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC------ce------EEEeCCCcc-
Q 000378 57 ---------------S---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE------QS------FVLHSPEKK- 105 (1605)
Q Consensus 57 ---------------~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~------q~------~v~~sp~~~- 105 (1605)
+ ++|..+|+.|-|.| .|..|++.+.|+|+|+|..... |. .+-.||.|.
T Consensus 337 td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 337 TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred CCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence 1 56888999999999 7889999999999999996553 11 445556654
Q ss_pred --------ccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEec
Q 000378 106 --------MES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1605)
Q Consensus 106 --------~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~ 176 (1605)
+++ .|.|++| ++ |+ ..++..+-+|-.|++ ||-+|||||++..||+|+-
T Consensus 416 ~~n~~~~~~l~sas~dstV-------~l--wd----v~~gv~i~~f~kH~~----------pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTV-------KL--WD----VESGVPIHTLMKHQE----------PVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred cCCCcCCceEEEeecCCeE-------EE--EE----ccCCceeEeeccCCC----------ceEEEEecCCCcEEEecCC
Confidence 333 5777788 88 99 889999999999999 9999999999999999999
Q ss_pred CceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
||.|-+|++++|+..=..+. -.|+--+-|+-+|.-|...-.||.+++-|+
T Consensus 473 dg~V~iws~~~~~l~~s~~~-----~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQG-----TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CCeeEeccccchheeEeecC-----CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999999998877777 345788899999988887778888887664
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-12 Score=134.71 Aligned_cols=203 Identities=24% Similarity=0.360 Sum_probs=156.2
Q ss_pred ccccc-ccccccc-cCCCCCCCCCceeEeCCCcceeeee--cCceEEEEeccCCceeee-ccCCcceeeeeecCCCCc-e
Q 000378 3 WATVQ-HLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVA--IGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGH-A 76 (1605)
Q Consensus 3 W~~~~-~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a--~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~-~ 76 (1605)
|+... ...+..+ +|.. .|.+++|+|++..++++ .+..|++||..+++.+.. ..|...|..++|+| +|. .
T Consensus 139 ~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 213 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSE----SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLL 213 (466)
T ss_pred EEecCCCeEEEEEecCcc----cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceE
Confidence 44443 3344444 6777 88899999999988884 399999999999888888 55899999999998 665 5
Q ss_pred EEEEecCCcEEeeccCCCce----------E-E-EeCCCccccc-cccCceeEeccCCCcceEEecccccccee-EEeee
Q 000378 77 VVAILEDCTIRSCDFDTEQS----------F-V-LHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVT-VVGTV 142 (1605)
Q Consensus 77 laa~~~D~tI~~wd~~~~q~----------~-v-~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~-~vgt~ 142 (1605)
+++++.|++|++||..+... . + .|+|++..+. .+.|+++ +. |. ..... .+-++
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~--~~----~~~~~~~~~~~ 280 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI-------RL--WD----LRSSSSLLRTL 280 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcE-------EE--ee----ecCCCcEEEEE
Confidence 55569999999998764322 2 2 6889985555 6888888 65 76 22111 23234
Q ss_pred ecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEe-c
Q 000378 143 EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVG-D 221 (1605)
Q Consensus 143 eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G-~ 221 (1605)
.+|.. +|.+++|+|++..+++++.|+.+++||+.+........ ...|...+..++|.|++.+++++ .
T Consensus 281 ~~~~~----------~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (466)
T COG2319 281 SGHSS----------SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGS 348 (466)
T ss_pred ecCCc----------cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeec
Confidence 77766 99999999999999999999999999999999887665 22377778999995555777766 7
Q ss_pred CCCeEEeeecCCCC
Q 000378 222 RRGTLLAWDVSIER 235 (1605)
Q Consensus 222 ~dgtl~~W~vs~~~ 235 (1605)
.|+++.+|++....
T Consensus 349 ~d~~~~~~~~~~~~ 362 (466)
T COG2319 349 DDGTIRLWDLRTGK 362 (466)
T ss_pred CCCcEEeeecCCCc
Confidence 88999999999776
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=146.49 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=134.2
Q ss_pred CCceeEeCCCcceeeee--cCceEEEEeccC-Cc---eeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCc-
Q 000378 23 QPHEAAFHPNQALIAVA--IGTYIIEFDTLT-GS---RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ- 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a--~g~~I~l~d~~t-G~---~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q- 95 (1605)
.|..++|+|+|++|.++ .+..|.+||..+ |. .+..+......+.++++|++...+++.+.+++|++||+++..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 68899999999999883 377999999864 32 223233345678899999444566888889999999997621
Q ss_pred -----------------eEEEeCCCcccccc-cc-CceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccC
Q 000378 96 -----------------SFVLHSPEKKMESI-SV-DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLK 156 (1605)
Q Consensus 96 -----------------~~v~~sp~~~~~~~-s~-d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~k 156 (1605)
.+++|+|||+.+-. .. +++| .||.=-....+.+.++++..+.. ..+ ..
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v---------~v~~~~~~~~~~~~~~~~~~~p~--~~~--~~ 227 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSV---------DVWQLKDPHGEIECVQTLDMMPA--DFS--DT 227 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEE---------EEEEEeCCCCCEEEEEEEecCCC--cCC--CC
Confidence 16899999999874 32 5777 44651000012344555533211 000 11
Q ss_pred CCceEeeeecCCCeEEEEec-CceEEEEecccceEEEEEeeccccc-cccceeEeecCCceEEEEecC-CCeEEeeecCC
Q 000378 157 KPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTYAVHYTLQLDNTIK-LLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSI 233 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a~~-dg~IR~w~i~t~~v~~tL~~~~~~~-~~g~~a~Af~P~g~~l~~G~~-dgtl~~W~vs~ 233 (1605)
+-...+++||++.+||++.. ++.|.+|++.+....-++.. .+. ..+...|+|+|||++|+|+.+ +++|.+|+++.
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~--~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG--HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE--EEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 12346899999999999954 78999999975432223433 001 125678999999999997764 99999999986
Q ss_pred CCC
Q 000378 234 ERP 236 (1605)
Q Consensus 234 ~~~ 236 (1605)
++=
T Consensus 306 ~~g 308 (330)
T PRK11028 306 ETG 308 (330)
T ss_pred CCC
Confidence 553
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=166.20 Aligned_cols=218 Identities=20% Similarity=0.312 Sum_probs=168.4
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEE
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|...+++.+|+++ .+ -++|..|=|.++.+.+ .-.+.+-+||...+..+.. -.|.+-+++|+.+| |+.-.+.|
T Consensus 399 Wn~~t~kciRTi~-~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~ 472 (888)
T KOG0306|consen 399 WNRDTLKCIRTIT-CG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTG 472 (888)
T ss_pred EEccCcceeEEec-cc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEe
Confidence 5555555555552 22 3455555555555555 3334555555555544444 45788899999999 88899999
Q ss_pred ecCCcEEeeccCC--C----c----------e--------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccc
Q 000378 81 LEDCTIRSCDFDT--E----Q----------S--------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMS 135 (1605)
Q Consensus 81 ~~D~tI~~wd~~~--~----q----------~--------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s 135 (1605)
+.|.|||+||+.- . | + ||.+||||+.+++ ==|.|| + ||| ..+
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV-------k--Vyf----lDt 539 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTV-------K--VYF----LDT 539 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeE-------E--EEE----ecc
Confidence 9999999999854 1 1 1 9999999999996 467899 3 377 777
Q ss_pred eeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCce
Q 000378 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE 215 (1605)
Q Consensus 136 ~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~ 215 (1605)
-+.-=+++||+= ||.|+-.|||+..+++||+|..|++|-++=|.-|=.+.. |...|-++-|-|.-.
T Consensus 540 lKFflsLYGHkL----------PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA----HdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 540 LKFFLSLYGHKL----------PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA----HDDSVMSVQFLPKTH 605 (888)
T ss_pred eeeeeeeccccc----------ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc----ccCceeEEEEcccce
Confidence 777668999999 999999999999999999999999999999999988888 999999999999888
Q ss_pred EEEEecCCCeEEeeecCCCCCeeee-ecc-ceeEEEEEEeeC
Q 000378 216 WLFVGDRRGTLLAWDVSIERPSMIG-MDG-SLQVWKTRVIIN 255 (1605)
Q Consensus 216 ~l~~G~~dgtl~~W~vs~~~~~m~g-~~g-~~~~w~~rv~~~ 255 (1605)
..|+.++||.++=||-.- =-||= .+| ..+||..-|..|
T Consensus 606 ~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred eEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCC
Confidence 888999999999998651 11221 245 778999887765
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=154.21 Aligned_cols=207 Identities=17% Similarity=0.216 Sum_probs=167.4
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeC-CCcc--eeee-ecCceEEEEeccCCceeee-----ccCCcceeeeeecCC
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFH-PNQA--LIAV-AIGTYIIEFDTLTGSRIAS-----IDINSPVVRMAYSPT 72 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~-P~ga--llA~-a~g~~I~l~d~~tG~~~~~-----l~~~~~v~~lA~SP~ 72 (1605)
|+..- +..-++ ||++ ++.+++++ +|.. +|++ |-|++|+||--.-|.--.. -+|-++|.+++-.+
T Consensus 130 Wd~~G-k~~~~~~Ght~----~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~- 203 (423)
T KOG0313|consen 130 WDLKG-KSIKTIVGHTG----PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS- 203 (423)
T ss_pred EecCC-ceEEEEecCCc----ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-
Confidence 55444 444445 9999 88877665 4544 3555 9999999998777654333 49999999999999
Q ss_pred CCceEEEEecCCcEEeeccCCC--ce-----------------------------------EEEeCCCccccccccCcee
Q 000378 73 SGHAVVAILEDCTIRSCDFDTE--QS-----------------------------------FVLHSPEKKMESISVDTEV 115 (1605)
Q Consensus 73 ~g~~laa~~~D~tI~~wd~~~~--q~-----------------------------------~v~~sp~~~~~~~s~d~~i 115 (1605)
+|.++++|++|++|++|++.++ .+ .|.|++.+.....|=|-||
T Consensus 204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTI 283 (423)
T KOG0313|consen 204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTI 283 (423)
T ss_pred CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceE
Confidence 9999999999999999994432 00 8889997777778889888
Q ss_pred EeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccc---eEEE
Q 000378 116 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY---AVHY 192 (1605)
Q Consensus 116 h~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~---~v~~ 192 (1605)
|- |. .-++.-+.++.+. |++.+++.||...+|++|+.|+.||+||=.++ .|..
T Consensus 284 -------k~--WD----letg~~~~~~~~~-----------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 284 -------KV--WD----LETGGLKSTLTTN-----------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred -------EE--EE----eecccceeeeecC-----------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 54 99 6666666555543 56999999999999999999999999998765 4666
Q ss_pred EEeeccccccccceeEeecCCceEEE-EecCCCeEEeeecCCCCCeeeeecc
Q 000378 193 TLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIERPSMIGMDG 243 (1605)
Q Consensus 193 tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs~~~~~m~g~~g 243 (1605)
+|.+ |-+=|.++-.||+-+..| +|+.|+|+++||+-...-+|.-|+|
T Consensus 340 s~~g----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 340 SLIG----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred eeec----chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 9999 999999999999999988 9999999999999988877877743
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=161.09 Aligned_cols=200 Identities=16% Similarity=0.225 Sum_probs=172.0
Q ss_pred cccccccccccc-c-CCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceE
Q 000378 3 WATVQHLDLRHV-G-RGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 3 W~~~~~~~l~~~-g-~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~l 77 (1605)
|+...++.++.+ + |.. +|-|++|. +-.|.+ +-+..|..+|..++..... .+|.--|+-|+||+ |+..+
T Consensus 244 wD~~~~k~~~~~~~~h~~----rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~l 316 (484)
T KOG0305|consen 244 WDVKEQKKTRTLRGSHAS----RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQL 316 (484)
T ss_pred EehhhccccccccCCcCc----eeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCee
Confidence 888888999999 5 677 99999999 556666 8888999999998877766 67999999999999 99999
Q ss_pred EEEecCCcEEeeccCCCce------------EEEeCC-Cccccc---cccCceeEeccCCCcceEEeccccccceeEEee
Q 000378 78 VAILEDCTIRSCDFDTEQS------------FVLHSP-EKKMES---ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT 141 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q~------------~v~~sp-~~~~~~---~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt 141 (1605)
|+|+.|..+.+||..+.++ .++++| ....+| ++.|++| +. |+ ..+++.+..
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i-------~f--wn----~~~g~~i~~ 383 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI-------KF--WN----TNTGARIDS 383 (484)
T ss_pred ccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE-------EE--EE----cCCCcEecc
Confidence 9999999999999955322 778886 455566 3788899 77 99 888888877
Q ss_pred eecCCCCcccccccCCCceEeeeecCC--CeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEE
Q 000378 142 VEGGRAPTKIKTDLKKPIVNLACHPRL--PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFV 219 (1605)
Q Consensus 142 ~eG~~~~~~ik~d~kkpV~~LA~~P~~--~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~ 219 (1605)
+.-+.- |.+|+++|.. =+...||.++.|++|+.-+....-.|.+ |..-|..+|.+|||+.|+|
T Consensus 384 vdtgsQ-----------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g----H~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 384 VDTGSQ-----------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG----HTSRVLYLALSPDGETIVT 448 (484)
T ss_pred cccCCc-----------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC----CcceeEEEEECCCCCEEEE
Confidence 766665 9999999998 4556789999999999999888888888 9999999999999999999
Q ss_pred ecCCCeEEeeecCCCCCe
Q 000378 220 GDRRGTLLAWDVSIERPS 237 (1605)
Q Consensus 220 G~~dgtl~~W~vs~~~~~ 237 (1605)
|+.|.||++|.+-.++|.
T Consensus 449 ~a~DETlrfw~~f~~~~~ 466 (484)
T KOG0305|consen 449 GAADETLRFWNLFDERPK 466 (484)
T ss_pred ecccCcEEeccccCCCCc
Confidence 999999999999977554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-13 Score=149.77 Aligned_cols=227 Identities=16% Similarity=0.249 Sum_probs=165.4
Q ss_pred cccccc-----cccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCC-----ceeee-ccCCcceeeeee
Q 000378 3 WATVQH-----LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTG-----SRIAS-IDINSPVVRMAY 69 (1605)
Q Consensus 3 W~~~~~-----~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG-----~~~~~-l~~~~~v~~lA~ 69 (1605)
|...|| +++..+ ||++ .|.|+|||.||+.||+ +.|+.|++||...= +-++. +..+ -..+++|
T Consensus 66 ~k~~q~~f~Hpl~~~~LKgH~~----~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~F 140 (420)
T KOG2096|consen 66 WKAKQPTFVHPLNVSVLKGHKK----EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVF 140 (420)
T ss_pred hcccCCCcccchhhhhhhccCC----ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEE
Confidence 555554 567777 9999 9999999999999999 99999999997531 11222 4444 5689999
Q ss_pred cCCCCceEEEEecCCcEEeeccCCCc------eE------------------EEeCCCccccc-cccCceeEeccCCCcc
Q 000378 70 SPTSGHAVVAILEDCTIRSCDFDTEQ------SF------------------VLHSPEKKMES-ISVDTEVHLALTPLQP 124 (1605)
Q Consensus 70 SP~~g~~laa~~~D~tI~~wd~~~~q------~~------------------v~~sp~~~~~~-~s~d~~ih~a~t~~~l 124 (1605)
+|+-..++++.-...+++.+-.+-.. ++ +----.++.|. .|.|++| .+
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i-------~l 213 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI-------CL 213 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcE-------EE
Confidence 99666777777777888887765421 11 11113455666 6889999 55
Q ss_pred eEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecc--------cceEEEEEee
Q 000378 125 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH--------TYAVHYTLQL 196 (1605)
Q Consensus 125 ~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~--------t~~v~~tL~~ 196 (1605)
|. .+ +..++++.---. .-.--|.||+|.+|+++.----|+.|.+- .-...+.|.+
T Consensus 214 --w~----lk-Gq~L~~idtnq~----------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 214 --WD----LK-GQLLQSIDTNQS----------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred --Ee----cC-Cceeeeeccccc----------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 99 44 666665433222 22335889999999999988889999863 2234467888
Q ss_pred ccccccccceeEeecCCceEEEEecCCCeEEeeecCC-----CCCeee--e-e----ccceeEEEEEEeeCCCCCccccc
Q 000378 197 DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-----ERPSMI--G-M----DGSLQVWKTRVIINPNRPPMQAN 264 (1605)
Q Consensus 197 ~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~-----~~~~m~--g-~----~g~~~~w~~rv~~~~~~~~~~a~ 264 (1605)
|..+|-++||+|+-+-.++-|+||++++||... +-|-+. | + -|.--+ |.-+.||.....++
T Consensus 277 ----H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~---RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 277 ----HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV---RLELSPSGDSLAVS 349 (420)
T ss_pred ----chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce---EEEeCCCCcEEEee
Confidence 999999999999999999999999999999882 334332 2 1 255554 99999999888877
Q ss_pred c
Q 000378 265 F 265 (1605)
Q Consensus 265 ~ 265 (1605)
|
T Consensus 350 ~ 350 (420)
T KOG2096|consen 350 F 350 (420)
T ss_pred c
Confidence 6
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=162.02 Aligned_cols=188 Identities=14% Similarity=0.191 Sum_probs=163.6
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEecc-------CCce-e-----eeccCCcceeeeeecCCCCceEEEE
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTL-------TGSR-I-----ASIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~-------tG~~-~-----~~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
-|.+ .+-.++-+|||+-+++ |.|++|+.||-. |.+| + .++++..-|-++++|| ||..||++
T Consensus 452 AHdg----aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVs 526 (888)
T KOG0306|consen 452 AHDG----AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVS 526 (888)
T ss_pred cccc----ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEE
Confidence 4777 8899999999999999 999999999842 2222 3 3489999999999999 99999999
Q ss_pred ecCCcEEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCC
Q 000378 81 LEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~ 147 (1605)
+-|+|+|.+-+||-+- |+--|||++.+. .|.|..| +- |- ..=+.-=--+-+|-+
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnV-------Ki--WG----LdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNV-------KI--WG----LDFGDCHKSFFAHDD 593 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCce-------EE--ec----cccchhhhhhhcccC
Confidence 9999999999999422 899999999999 5999999 77 75 222222224789999
Q ss_pred CcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEE
Q 000378 148 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 148 ~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~ 227 (1605)
.|.++-|-|+....++++-||-||=||-..+.-+-+|.+ |..-|.|+|-+|+|..+|++|||.+|+
T Consensus 594 ----------Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~----H~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 594 ----------SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG----HHSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred ----------ceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc----chheeeeeEEcCCCCeEEeccCCceeE
Confidence 999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eeecCCC
Q 000378 228 AWDVSIE 234 (1605)
Q Consensus 228 ~W~vs~~ 234 (1605)
+|-...+
T Consensus 660 lwE~tde 666 (888)
T KOG0306|consen 660 LWERTDE 666 (888)
T ss_pred eeeccCc
Confidence 9976543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-13 Score=146.29 Aligned_cols=196 Identities=16% Similarity=0.206 Sum_probs=160.8
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|+......|++- |||. -|--++-+.|..-+|+ +.|+.|.+||+.||+.++- -+|.+.|+.++|+- +..+|++
T Consensus 44 WNp~rg~liktYsghG~----EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~S 118 (307)
T KOG0316|consen 44 WNPLRGALIKTYSGHGH----EVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVAS 118 (307)
T ss_pred ecccccceeeeecCCCc----eeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEe
Confidence 665555677777 9999 9999999999999999 9999999999999999999 89999999999998 7789999
Q ss_pred EecCCcEEeeccCCC-----ce-----------------------------------------------EEEeCCCcccc
Q 000378 80 ILEDCTIRSCDFDTE-----QS-----------------------------------------------FVLHSPEKKME 107 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~-----q~-----------------------------------------------~v~~sp~~~~~ 107 (1605)
|+.|++||+||--.+ |. ||-||+|+.-.
T Consensus 119 gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 119 GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCS 198 (307)
T ss_pred ccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEE
Confidence 999999999997653 11 88888888755
Q ss_pred c-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecc
Q 000378 108 S-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 186 (1605)
Q Consensus 108 ~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~ 186 (1605)
- .|=|+++ || -. ..+++.++.-.||.+ +.-|.|- .+.-+...+++||+||.|-+||+.
T Consensus 199 La~~l~stl-------rL--lD----k~tGklL~sYkGhkn-~eykldc-------~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 199 LASSLDSTL-------RL--LD----KETGKLLKSYKGHKN-MEYKLDC-------CLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred EEeecccee-------ee--cc----cchhHHHHHhccccc-ceeeeee-------eecccceeEEeccCCceEEEEEec
Confidence 4 4777888 76 56 778999988999999 3333331 223778889999999999999999
Q ss_pred cceEEEEEeecccccccc-ceeEeecCCceEEEEecCCCeEEee
Q 000378 187 TYAVHYTLQLDNTIKLLG-AGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 187 t~~v~~tL~~~~~~~~~g-~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
+.+++-.|.- |..- +..++|||+.+-+++....+ ++.|
T Consensus 258 d~~~~sk~~~----~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 258 DETQISKLSV----VSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred cceeeeeecc----CCceeEEeeecccCccceeEecCCc-eece
Confidence 9999966665 5544 78999999999988765433 4444
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=146.86 Aligned_cols=192 Identities=21% Similarity=0.263 Sum_probs=147.7
Q ss_pred CCceeEeCCC-cceeee-ecCceEEEEeccC-Cceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-
Q 000378 23 QPHEAAFHPN-QALIAV-AIGTYIIEFDTLT-GSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1605)
Q Consensus 23 ~v~~~aF~P~-gallA~-a~g~~I~l~d~~t-G~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~- 96 (1605)
.+.+++|||. .-+||+ |||++|+.||+.. |.-+.. ..|..||-.++||- ||..+.+|+.|+..++||+.+.|+
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q~~ 107 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQVS 107 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCCee
Confidence 8999999994 344434 9999999999876 566555 89999999999999 889999999999999999999877
Q ss_pred ----------EEEeCCCc--cccc-cccCceeEeccCCCcceEEecccccc---------------------ceeEEeee
Q 000378 97 ----------FVLHSPEK--KMES-ISVDTEVHLALTPLQPVVFFGFHRRM---------------------SVTVVGTV 142 (1605)
Q Consensus 97 ----------~v~~sp~~--~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~---------------------s~~~vgt~ 142 (1605)
++.+=+.. ..++ +|=|.|+ |- |+ .. ..-+|+|-
T Consensus 108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTl-------Kf--WD----~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTL-------KF--WD----TRSSNPVATLQLPERVYAADVLYPMAVVATA 174 (347)
T ss_pred eeeecccceeEEEEecCCCcceeEecccccce-------ee--cc----cCCCCeeeeeeccceeeehhccCceeEEEec
Confidence 12222222 2445 5888888 66 65 21 22233332
Q ss_pred ecC-------CCCcc---cccccCCCceEeeeecCCCeEEEEecCceEEEEecccc--eEEEEEeeccccccc-------
Q 000378 143 EGG-------RAPTK---IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY--AVHYTLQLDNTIKLL------- 203 (1605)
Q Consensus 143 eG~-------~~~~~---ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~--~v~~tL~~~~~~~~~------- 203 (1605)
+-| .+||. |+--||--+||+||++|...-+.||-||-+-+-+|..+ ..-+|+.- |..
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC----HR~~~~~~~~ 250 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC----HRSTNSVNDD 250 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE----eccCCCCCCc
Confidence 222 23333 33457778999999999999999999999999999988 67778776 552
Q ss_pred --cceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 204 --GAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 204 --g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.|.++||||.-.+|+|.+.|||+.+||-.
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecch
Confidence 46799999999999999999999999976
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=144.30 Aligned_cols=162 Identities=17% Similarity=0.099 Sum_probs=137.0
Q ss_pred CCCCceeEeCCCcceeee-ecCceEEEEeccCCc--eeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-
Q 000378 21 PLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGS--RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~--~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~- 96 (1605)
+..|++++.||+|.-|.+ .-+.+|.+||+.+.. ...+.+-.-+|.+++--| ||..|+|+-.-|+.+.|++-++|+
T Consensus 124 ~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTA 202 (311)
T ss_pred CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcc
Confidence 459999999999999999 667899999998772 233367778999999999 999999999999999999988644
Q ss_pred -----------------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccce-eEEeeeecCCCCcccccccCC
Q 000378 97 -----------------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSV-TVVGTVEGGRAPTKIKTDLKK 157 (1605)
Q Consensus 97 -----------------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~-~~vgt~eG~~~~~~ik~d~kk 157 (1605)
..+||||++.+++ |+|.|+ +- |+ .... +.--.++||--
T Consensus 203 s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv-------~i--wn----~~~~~kle~~l~gh~r---------- 259 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV-------KI--WN----TDDFFKLELVLTGHQR---------- 259 (311)
T ss_pred ccceEhhheecccceEEEEEECCCCcEEEeecCCceE-------EE--Ee----cCCceeeEEEeecCCc----------
Confidence 6789999999995 999999 65 88 5544 22225899976
Q ss_pred CceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEee
Q 000378 158 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 210 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af 210 (1605)
=|+.-|||-||..|++|+.|+++|+|++.++...-.-++ |.-++-|.|.
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g----h~K~~vc~~l 308 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG----HHKAAVCVAL 308 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCC----cccccEEEEe
Confidence 899999999999999999999999999999997766677 7777766664
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9e-13 Score=152.09 Aligned_cols=226 Identities=18% Similarity=0.188 Sum_probs=165.9
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee----ccCCcceeeeeecCCCCceEEEEecCC
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
.+.+ -|.+ -|-=+.|||||++||+ +-|++..+|++.-..++.. .+|..+|--++|||+|. .|++...|.
T Consensus 217 ~qil~~htd----EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e 291 (519)
T KOG0293|consen 217 WQILQDHTD----EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDE 291 (519)
T ss_pred hhhHhhCCC----cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-eEEecCchH
Confidence 3444 5888 8999999999999999 9999999999988877554 89999999999999665 666666666
Q ss_pred cEEeeccCCCc-------e------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcc
Q 000378 85 TIRSCDFDTEQ-------S------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1605)
Q Consensus 85 tI~~wd~~~~q-------~------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ 150 (1605)
.+++||.+|+- . |+++-|||.-.- +|.|+++ .. |. ..+..++.-||.+.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i-------~~--wd-----lDgn~~~~W~gvr~--- 354 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTI-------IM--WD-----LDGNILGNWEGVRD--- 354 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcE-------EE--ec-----CCcchhhccccccc---
Confidence 79999999951 1 888999997655 7999888 44 76 56777888899987
Q ss_pred cccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecc---------------------ccccc------
Q 000378 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDN---------------------TIKLL------ 203 (1605)
Q Consensus 151 ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~---------------------~~~~~------ 203 (1605)
.-|..||.++||.+|+.-..|.-||+||..+-.-.-.++++- .||+=
T Consensus 355 ------~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 355 ------PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred ------ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 259999999999999999999999999998766553333322 22211
Q ss_pred ------cc--------eeEeecCCceEEEEecCCCeEEeeecCCCCCe--eeeeccceeEEEEEEeeCCCCCcccccccc
Q 000378 204 ------GA--------GAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS--MIGMDGSLQVWKTRVIINPNRPPMQANFFE 267 (1605)
Q Consensus 204 ------g~--------~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~--m~g~~g~~~~w~~rv~~~~~~~~~~a~~~~ 267 (1605)
|. .||+.+- -..+++||.|+.|+||+.....|- +.|=-+++- =|.-||-.|.|-|+...
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~-~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN----cVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGN-DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN----CVSWNPADPEMFASASD 503 (519)
T ss_pred HHHHhhcccccceEEEeccCCCC-cceEEecCCCceEEEEEccCCceeEeecCCcceee----EEecCCCCHHHhhccCC
Confidence 11 0444432 245566777777777766655442 223333333 36779999999998765
Q ss_pred cC
Q 000378 268 PA 269 (1605)
Q Consensus 268 ~a 269 (1605)
.-
T Consensus 504 Dg 505 (519)
T KOG0293|consen 504 DG 505 (519)
T ss_pred CC
Confidence 43
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=152.62 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=125.7
Q ss_pred CCceeEeCCCcceeee-ecC---ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEe-cCCcEEe--eccCCCc
Q 000378 23 QPHEAAFHPNQALIAV-AIG---TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL-EDCTIRS--CDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g---~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~-~D~tI~~--wd~~~~q 95 (1605)
.+.+.+|||||+.||. +.+ ..|.+||..||...............+||| ||..|+.++ .|+.+.+ ||+++.+
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCC
Confidence 6889999999999998 544 479999999997655544444566899999 887777765 6886555 5665532
Q ss_pred -----------eEEEeCCCcccccccc--CceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEe
Q 000378 96 -----------SFVLHSPEKKMESISV--DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 96 -----------~~v~~sp~~~~~~~s~--d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~L 162 (1605)
....|||||+.+..++ ++.. +.|.++ ..... +..+ +|.. .++
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~-------~I~~~~----~~~~~-~~~l-~~~~------------~~~ 338 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSP-------QVYRMS----ASGGG-ASLV-GGRG------------YSA 338 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEECCCCCc-------eEEEEE----CCCCC-eEEe-cCCC------------CCc
Confidence 1789999999887433 3555 665555 22111 1111 2211 357
Q ss_pred eeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 163 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 163 A~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
++|||+..||.++.|++++ ||+.++... .+.. + + -..+.+|+|||++|+.++.+|...+|++.
T Consensus 339 ~~SpDG~~ia~~~~~~i~~-~Dl~~g~~~-~lt~--~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 339 QISADGKTLVMINGDNVVK-QDLTSGSTE-VLSS--T-F--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred cCCCCCCEEEEEcCCCEEE-EECCCCCeE-EecC--C-C--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 8999999999998888886 999999865 3332 1 1 12578899999999999889999988864
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=144.94 Aligned_cols=200 Identities=18% Similarity=0.203 Sum_probs=158.8
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|-......|-+. ||++ .|-|+.-.=+.+.|.+ |.|.+|+|||+.||+.+..+..+.+|.++-||+ +|+.+++.
T Consensus 37 w~s~nGerlGty~GHtG----avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~ 111 (327)
T KOG0643|consen 37 WYSLNGERLGTYDGHTG----AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILAS 111 (327)
T ss_pred EEecCCceeeeecCCCc----eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEE
Confidence 555555777788 9999 9999999999999999 999999999999999999999999999999999 88877765
Q ss_pred e-----cCCcEEeeccCC-------Cc------------eEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccc
Q 000378 81 L-----EDCTIRSCDFDT-------EQ------------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMS 135 (1605)
Q Consensus 81 ~-----~D~tI~~wd~~~-------~q------------~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s 135 (1605)
. .-|.|.+.|+.. +. +.++++|-+++|- +-+|+.| .- |. ..+
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~i-------s~--~d----a~~ 178 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSI-------SI--YD----ART 178 (327)
T ss_pred ehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcE-------EE--EE----ccc
Confidence 4 447899999873 12 1566666666554 4556777 55 76 444
Q ss_pred ee-EEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccc------------
Q 000378 136 VT-VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL------------ 202 (1605)
Q Consensus 136 ~~-~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~------------ 202 (1605)
++ .|...+ +|.+.|.+|-++||.....+||-|.+.++||+.|.+++=|..-|--+..
T Consensus 179 g~~~v~s~~----------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vil 248 (327)
T KOG0643|consen 179 GKELVDSDE----------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVIL 248 (327)
T ss_pred Cceeeechh----------hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEe
Confidence 43 232233 3444999999999999999999999999999999998876654422221
Q ss_pred ---------------------------------------ccceeEeecCCceEEEEecCCCeEEeee
Q 000378 203 ---------------------------------------LGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 203 ---------------------------------------~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
+.+.++||||+|.--.+|+.||.+++--
T Consensus 249 gGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 249 GGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 1567999999999999999999998753
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-13 Score=156.26 Aligned_cols=237 Identities=17% Similarity=0.248 Sum_probs=190.9
Q ss_pred ccccccCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccC-Cceee-----eccCCcceeeeeecCCCCceEEEEecC
Q 000378 10 DLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLT-GSRIA-----SIDINSPVVRMAYSPTSGHAVVAILED 83 (1605)
Q Consensus 10 ~l~~~g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~t-G~~~~-----~l~~~~~v~~lA~SP~~g~~laa~~~D 83 (1605)
-++++.||. -|-+++.|-.-+.+-++.-+-||+||... |.|-+ .+.-++.+.+.-.+| ||.+|++|.+-
T Consensus 412 q~~tL~HGE----vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGea 486 (705)
T KOG0639|consen 412 QINTLAHGE----VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEA 486 (705)
T ss_pred hhhhhccCc----EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEecccc
Confidence 456678998 88999999999999998888999999653 33333 366788899999999 99999999999
Q ss_pred CcEEeeccCCCce--------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCC
Q 000378 84 CTIRSCDFDTEQS--------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 84 ~tI~~wd~~~~q~--------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
.|+-+||+.+..+ .++-|||.+..- -.+||.| .||+ .-.-+.|.+|.||.+
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI---------~vwD----Lhnq~~VrqfqGhtD- 552 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNI---------AVWD----LHNQTLVRQFQGHTD- 552 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcE---------EEEE----cccceeeecccCCCC-
Confidence 9999999998633 578899998665 4788888 5699 778889999999999
Q ss_pred cccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccc--ccceeEeecCCceEEEEecCCCeE
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL--LGAGAFAFHPTLEWLFVGDRRGTL 226 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~--~g~~a~Af~P~g~~l~~G~~dgtl 226 (1605)
-+.|+-.++||--|-+|+-|+++|-||+.++..+ |. |. .-|-++.+.|+++||+||=..+-+
T Consensus 553 ---------GascIdis~dGtklWTGGlDntvRcWDlregrql---qq----hdF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 553 ---------GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL---QQ----HDFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred ---------CceeEEecCCCceeecCCCccceeehhhhhhhhh---hh----hhhhhhheecccCCCccceeeecccCcE
Confidence 9999999999999999999999999999998765 33 32 346688999999999999999987
Q ss_pred EeeecCCCCCeeeee----------------------ccceeEEEEEEeeCCCCCcccccccccCC---ccccccce---
Q 000378 227 LAWDVSIERPSMIGM----------------------DGSLQVWKTRVIINPNRPPMQANFFEPAS---IESIDIPR--- 278 (1605)
Q Consensus 227 ~~W~vs~~~~~m~g~----------------------~g~~~~w~~rv~~~~~~~~~~a~~~~~a~---~es~d~~~--- 278 (1605)
-+--.+-+.--|.+. |--|-+||| |.-|++|++.. |-|-||-+
T Consensus 617 evlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt---------PyGasiFqskE~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 617 EVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT---------PYGASIFQSKESSSVLSCDISFDDK 687 (705)
T ss_pred EEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccC---------ccccceeeccccCcceeeeeccCce
Confidence 666555555566666 345667776 99999998766 55556542
Q ss_pred eeccCCCc---ceec
Q 000378 279 ILSQQGGE---AVYP 290 (1605)
Q Consensus 279 il~~~~g~---~vyp 290 (1605)
.+--++|| +||-
T Consensus 688 yIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 688 YIVTGSGDKKATVYE 702 (705)
T ss_pred EEEecCCCcceEEEE
Confidence 33457787 6764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=162.16 Aligned_cols=205 Identities=18% Similarity=0.200 Sum_probs=166.7
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccC-------Cc-----------eeee-ccCCcceeee
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLT-------GS-----------RIAS-IDINSPVVRM 67 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~t-------G~-----------~~~~-l~~~~~v~~l 67 (1605)
..|-+. .|.+ .|.|+-|||||++||+ |.|+.|.+|+-.+ |+ ...+ -+|..-|.-+
T Consensus 60 k~l~~m~~h~~----sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 60 KHLCTMDDHDG----SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred hhheeeccccC----ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence 444444 6777 8999999999999999 9999999999873 22 3333 7899999999
Q ss_pred eecCCCCceEEEEecCCcEEeeccCCCce------------EEEeCCCcccccc-ccCceeEeccCCCcceEEecccccc
Q 000378 68 AYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRM 134 (1605)
Q Consensus 68 A~SP~~g~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~ 134 (1605)
+||| ++..||+++.|.+|.+||-.|... -|.|.|-|+++|. |.|++| -||+ .+
T Consensus 136 ~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrti---------kvwr----t~ 201 (942)
T KOG0973|consen 136 NWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTL---------KVWR----TS 201 (942)
T ss_pred ccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceE---------EEEE----cc
Confidence 9999 888999999999999999988421 6889999999995 999999 4598 77
Q ss_pred ceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEec----CceEEEEecccceEEEEEeeccccccccceeEee
Q 000378 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA----DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 210 (1605)
Q Consensus 135 s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~----dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af 210 (1605)
+....-++.++-. +.-+.-=++-|-.||||..|+|+-+ --+|.+-+=.|..+-+.|-+ |..++.+++|
T Consensus 202 dw~i~k~It~pf~----~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG----H~~p~evvrF 273 (942)
T KOG0973|consen 202 DWGIEKSITKPFE----ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG----HSAPVEVVRF 273 (942)
T ss_pred cceeeEeeccchh----hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec----CCCceEEEEe
Confidence 7666655665554 1222234677889999999998643 34788888899999999999 9999999999
Q ss_pred cCC------c-----------eEEEEecCCCeEEeeecCCCCCeee
Q 000378 211 HPT------L-----------EWLFVGDRRGTLLAWDVSIERPSMI 239 (1605)
Q Consensus 211 ~P~------g-----------~~l~~G~~dgtl~~W~vs~~~~~m~ 239 (1605)
+|- . +++|||++|++|.+|--...||-.+
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 762 2 4888999999999999999999654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.2e-13 Score=153.58 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=163.2
Q ss_pred Cccccccccccccc-c-------CCCCCCCCC---------ceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCC
Q 000378 1 MEWATVQHLDLRHV-G-------RGDHKPLQP---------HEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDIN 61 (1605)
Q Consensus 1 m~W~~~~~~~l~~~-g-------~~~~~~~~v---------~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~ 61 (1605)
|+|.+.+.++.+.+ - |+. |+.. -|+|-||||++||+ +.|++|.+||..|+.-+-. .+|.
T Consensus 167 ~kw~v~tgk~~~~i~~~~ev~k~~~~--~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr 244 (479)
T KOG0299|consen 167 LKWDVLTGKKDRYIIERDEVLKSHGN--PLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR 244 (479)
T ss_pred eeeehhcCcccccccccchhhhhccC--CCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc
Confidence 57888888877665 1 222 4443 48999999999999 9999999999999999999 9999
Q ss_pred cceeeeeecCCCCceEEEEecCCcEEeeccCCC-ceEEEeCCCccccc------------cccCceeEeccCCCcceEEe
Q 000378 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-QSFVLHSPEKKMES------------ISVDTEVHLALTPLQPVVFF 128 (1605)
Q Consensus 62 ~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q~~v~~sp~~~~~~------------~s~d~~ih~a~t~~~l~vw~ 128 (1605)
..|.++||=- +-|-|.++++|.+|++|+++.- ..--+|-+++..++ +.+|+|+ |+ |-
T Consensus 245 ~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~-------rl--wK 314 (479)
T KOG0299|consen 245 GAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTV-------RL--WK 314 (479)
T ss_pred cceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecccccee-------EE--Ee
Confidence 9999999985 4489999999999999999872 22222333332222 2477888 88 88
Q ss_pred ccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecc---ccc--cc
Q 000378 129 GFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDN---TIK--LL 203 (1605)
Q Consensus 129 ~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~---~~~--~~ 203 (1605)
..+-+.+ ++.||.. .|-|+||--+ --+++||+||.|-||++..-.+++|-+.-- +.+ +.
T Consensus 315 ----i~eesql-ifrg~~~----------sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 315 ----IPEESQL-IFRGGEG----------SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred ----cccccee-eeeCCCC----------CeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 7666666 8999987 8999999844 457899999999999999999999877611 111 11
Q ss_pred ---cceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 204 ---GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 204 ---g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
=+.|+|--|.-+.+++||.+|-|++|++.+.
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 3669999999999999999999999999976
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=159.55 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=160.2
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEE
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~ 87 (1605)
+.++-+ ||.+ -|=-++||-++-||-+|.|++|+||++-+-.=+-+..|...|+.+||.|-|-...++||-||-||
T Consensus 360 kP~~ef~GHt~----DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 360 KPFCEFKGHTA----DILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred cchhhhhccch----hheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceE
Confidence 445666 8999 89999999999999999999999999987767777999999999999999999999999999999
Q ss_pred eeccCCCce-----------EEEeCCCccccc-cccCceeEeccCC-CcceEEeccccccceeEEeeeecCCCCcccccc
Q 000378 88 SCDFDTEQS-----------FVLHSPEKKMES-ISVDTEVHLALTP-LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1605)
Q Consensus 88 ~wd~~~~q~-----------~v~~sp~~~~~~-~s~d~~ih~a~t~-~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d 154 (1605)
+|++-+++. +|.|+|||+..- ++=+|..++=.|. +++ .++..+- +.+ +| |--
T Consensus 436 iWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~--------~~~~~I~--~~~----~K-k~~ 500 (712)
T KOG0283|consen 436 LWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL--------VSDFHIR--LHN----KK-KKQ 500 (712)
T ss_pred EeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE--------EEeeeEe--ecc----Cc-ccc
Confidence 999998765 999999999765 4777888555554 444 2222221 221 22 344
Q ss_pred cCCCceEeeeecCCC-eEEEEecCceEEEEecccceEEEEEeecccccccc-c-eeEeecCCceEEEEecCCCeEEeeec
Q 000378 155 LKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG-A-GAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 155 ~kkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g-~-~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
.| -|++|-|+|-.+ .|.|.|+|-.||+||..+-.++..|.+ +..+ - -.=.|+.||+.|++|++|.-+.+|..
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG----~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG----FRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc----cccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 44 799999997777 366778899999999977777766766 2222 1 14578999999999999999999998
Q ss_pred CCC
Q 000378 232 SIE 234 (1605)
Q Consensus 232 s~~ 234 (1605)
+..
T Consensus 576 ~~~ 578 (712)
T KOG0283|consen 576 DSF 578 (712)
T ss_pred CCC
Confidence 633
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-12 Score=130.96 Aligned_cols=190 Identities=25% Similarity=0.326 Sum_probs=152.9
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCc-eeee-ccCC-cceeeeee-cCCCCceEEEEec-CCcEEe
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGS-RIAS-IDIN-SPVVRMAY-SPTSGHAVVAILE-DCTIRS 88 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~-~~~~-l~~~-~~v~~lA~-SP~~g~~laa~~~-D~tI~~ 88 (1605)
++.. .+.++.|++++..++. +.++.|.+||...+. .+.. .... ..+..+.+ ++...+.++.... |++|++
T Consensus 63 ~~~~----~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 63 GHED----SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eccc----eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 4555 8999999999999998 679999999999887 5555 3323 37888888 8833336666555 999999
Q ss_pred eccCC-Cce------------EEEeCCCcccccc-cc-CceeEeccCCCcceEEeccccccceeEEeeeecCCCCccccc
Q 000378 89 CDFDT-EQS------------FVLHSPEKKMESI-SV-DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 89 wd~~~-~q~------------~v~~sp~~~~~~~-s~-d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
||+.+ ... .+.|+|+++.+.. +. |+.+ +. |. ......+.++.+|..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~--~~----~~~~~~~~~~~~~~~------ 199 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI-------KL--WD----LRTGKPLSTLAGHTD------ 199 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCce-------EE--EE----cCCCceEEeeccCCC------
Confidence 99986 211 7899999997764 43 7777 55 98 666778888999888
Q ss_pred ccCCCceEeeeecCCC-eEEEEecCceEEEEecccceEEE-EEeeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 154 DLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHY-TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 154 d~kkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~-tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
+|.+++++|+++ .+++++.|+.|++||..++.+.. ++.. |.... --.|+|++..+++++.|+++++|++
T Consensus 200 ----~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 200 ----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG----HSDSV-VSSFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred ----ceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC----CCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence 999999999999 55565999999999999999987 5777 77765 3389999988889999999999999
Q ss_pred CCCCC
Q 000378 232 SIERP 236 (1605)
Q Consensus 232 s~~~~ 236 (1605)
.....
T Consensus 271 ~~~~~ 275 (466)
T COG2319 271 RSSSS 275 (466)
T ss_pred cCCCc
Confidence 96654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-13 Score=164.58 Aligned_cols=161 Identities=16% Similarity=0.244 Sum_probs=126.2
Q ss_pred ceeEeCC-Ccceeee-ecCceEEEEeccC---Cceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEE
Q 000378 25 HEAAFHP-NQALIAV-AIGTYIIEFDTLT---GSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1605)
Q Consensus 25 ~~~aF~P-~gallA~-a~g~~I~l~d~~t---G~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v 98 (1605)
.-|.|+- +..+||+ +-++.|.+||... .+.+.+ -+|.-.|+.+.|+++.-++|++|++||+||+||+
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl------- 163 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL------- 163 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee-------
Confidence 3455552 3468898 8999999999886 344444 7999999999999888899999999999999999
Q ss_pred EeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecC-CCeEEEEecC
Q 000378 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR-LPVLYVAYAD 177 (1605)
Q Consensus 99 ~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~-~~vL~~a~~d 177 (1605)
=+.|... |+.|..+ .||-++|+|. +-..+++++.
T Consensus 164 ----------R~~~S~~-------------------------t~~~nSE----------SiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 164 ----------RSKKSKS-------------------------TFRSNSE----------SIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ----------ecccccc-------------------------cccccch----------hhhceeeccCCCceEEEecCC
Confidence 2444333 3334666 8899999975 5567889999
Q ss_pred ceEEEEecccceE-EEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCC-eeeee
Q 000378 178 GLIRAYNIHTYAV-HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP-SMIGM 241 (1605)
Q Consensus 178 g~IR~w~i~t~~v-~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~-~m~g~ 241 (1605)
|.+++|||--=.. -..|.. |-+.|-++.+||+++|||||+||+++++||+..+++ .|+=|
T Consensus 199 G~lqlWDlRqp~r~~~k~~A----H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI 260 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTA----HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI 260 (839)
T ss_pred ceEEEeeccCchhHHHHhhc----ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE
Confidence 9999999964332 224445 999999999999999999999999999999995554 34444
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-13 Score=154.38 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=153.5
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC--ce--
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--QS-- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--q~-- 96 (1605)
-|.++.|-.||+|||+ ..-++|++||-.+-..++. -.|.+||+..-|+|+|+.++++|+.|.+++.||+++. |+
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 4789999999999999 6667999999665445555 8999999999999999999999999999999999983 43
Q ss_pred --------EEEeCCCcc-ccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeec
Q 000378 97 --------FVLHSPEKK-MES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 97 --------~v~~sp~~~-~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P 166 (1605)
|.+++|... +.. +|=|++| |+ |. -|..+ ..+-+ -.|.. ||-++-+.|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~v-------rl--~D--tR~~~-~~v~e-lnhg~----------pVe~vl~lp 206 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKV-------RL--WD--TRSLT-SRVVE-LNHGC----------PVESVLALP 206 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceE-------EE--EE--eccCC-ceeEE-ecCCC----------ceeeEEEcC
Confidence 889999877 333 6889999 99 88 22222 33322 35666 999999999
Q ss_pred CCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 167 ~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
.|...++|+ ...||.||+.+|-..-+.+.+ |-=-|.|+.|.-++.-|.+|+-||.++++|+
T Consensus 207 sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~---H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 207 SGSLIASAG-GNSVKVWDLTTGGQLLTSMFN---HNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred CCCEEEEcC-CCeEEEEEecCCceehhhhhc---ccceEEEEEeecCCceEeecccccceEEEEc
Confidence 999999999 999999999988777666663 7778999999999999999999999999994
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=150.89 Aligned_cols=214 Identities=18% Similarity=0.225 Sum_probs=162.5
Q ss_pred CCceeEeCCCcceee-e-ecCceEEEEeccCCcee-----------eeccCCcceeeeeecCCCCceEEEEecCCcEEee
Q 000378 23 QPHEAAFHPNQALIA-V-AIGTYIIEFDTLTGSRI-----------ASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSC 89 (1605)
Q Consensus 23 ~v~~~aF~P~gallA-~-a~g~~I~l~d~~tG~~~-----------~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~w 89 (1605)
-|+-+-.=|+-..|+ + +.++.|.+||..+-.-. ...+|...-..|+||++.-..|++++.|.+|.+|
T Consensus 126 EVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lw 205 (422)
T KOG0264|consen 126 EVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLW 205 (422)
T ss_pred cchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEE
Confidence 455555556555544 4 88999999997653222 2256777677899999888999999999999999
Q ss_pred ccCCCce-------------------EEEeCCCccccc--cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCC
Q 000378 90 DFDTEQS-------------------FVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 90 d~~~~q~-------------------~v~~sp~~~~~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
|+..+.. -|+|+|-.+.+= .+.|+.+ .+|. -|..+-+.--++.+|..
T Consensus 206 di~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L---------~iwD--~R~~~~~~~~~~~ah~~- 273 (422)
T KOG0264|consen 206 DINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKL---------MIWD--TRSNTSKPSHSVKAHSA- 273 (422)
T ss_pred eccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeE---------EEEE--cCCCCCCCcccccccCC-
Confidence 9987422 566665444443 4666555 5688 22224444447899999
Q ss_pred cccccccCCCceEeeeec-CCCeEEEEecCceEEEEecccc-eEEEEEeeccccccccceeEeecCCceEEE-EecCCCe
Q 000378 149 TKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTY-AVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGT 225 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t~-~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgt 225 (1605)
+|.||+|.| +..+||+||+|++|++||+-|- ++++++.+ |-.-|-.+-|+|+-+.++ +.+.||+
T Consensus 274 ---------~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~----H~dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 274 ---------EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG----HEDEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred ---------ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC----CCcceEEEEeCCCCCceeEecccCCc
Confidence 999999996 7889999999999999999885 46679999 999999999999999877 7779999
Q ss_pred EEeeecC---CCC---------Ceeeee--------------------------ccceeEEEE-EEeeCCCCCcc
Q 000378 226 LLAWDVS---IER---------PSMIGM--------------------------DGSLQVWKT-RVIINPNRPPM 261 (1605)
Q Consensus 226 l~~W~vs---~~~---------~~m~g~--------------------------~g~~~~w~~-rv~~~~~~~~~ 261 (1605)
+.+||++ .++ |-|+=| |+.||||+. ++|.|+.++..
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~~e~~~~ 415 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYNPEDPEE 415 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccccCccccCc
Confidence 9999998 443 222222 689999986 48888877654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-12 Score=141.32 Aligned_cols=185 Identities=20% Similarity=0.216 Sum_probs=151.1
Q ss_pred cCCCCCCCCCceeEeCCCc-ceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccC
Q 000378 15 GRGDHKPLQPHEAAFHPNQ-ALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~g-allA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
||++ .|.-++|||.. -+||+ +.|+.|++||..+|+.+..+.....=--++||| +|..++++..|.-|-.-|..
T Consensus 62 gh~~----svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 62 GHTD----SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred CCCc----chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCcccEEEEEec
Confidence 6777 78888888765 46666 999999999999999999988888888999999 88899999999999988877
Q ss_pred CCce-----------------------------------------------------EEEeCCCccccc-cccCceeEec
Q 000378 93 TEQS-----------------------------------------------------FVLHSPEKKMES-ISVDTEVHLA 118 (1605)
Q Consensus 93 ~~q~-----------------------------------------------------~v~~sp~~~~~~-~s~d~~ih~a 118 (1605)
+.+. ||.|+|+||+.| +|+|--+
T Consensus 137 ~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv--- 213 (313)
T KOG1407|consen 137 TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV--- 213 (313)
T ss_pred ccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccccee---
Confidence 6432 999999999999 5999777
Q ss_pred cCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecc
Q 000378 119 LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDN 198 (1605)
Q Consensus 119 ~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~ 198 (1605)
-| |. ..+---+-.+. .|.-|||-|-||=||+.|||||+|..|-+=+++||..+..++
T Consensus 214 ----SL--WD----~~ELiC~R~is----------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--- 270 (313)
T KOG1407|consen 214 ----SL--WD----VDELICERCIS----------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--- 270 (313)
T ss_pred ----ec--cC----hhHhhhheeec----------cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee---
Confidence 66 88 44333332333 345599999999999999999999999999999999875555
Q ss_pred ccccccceeEeecCCceEEE-Eec-CC-------CeEEeeecC
Q 000378 199 TIKLLGAGAFAFHPTLEWLF-VGD-RR-------GTLLAWDVS 232 (1605)
Q Consensus 199 ~~~~~g~~a~Af~P~g~~l~-~G~-~d-------gtl~~W~vs 232 (1605)
+-+....+|+||.--.|+ .+| .| |+++++-++
T Consensus 271 --~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 271 --CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred --ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 356677999999999999 555 33 577776544
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=162.66 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=162.2
Q ss_pred ccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEec
Q 000378 6 VQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILE 82 (1605)
Q Consensus 6 ~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~ 82 (1605)
.+|+.+..+ ||.. -|.-++|+||+.+||+ |.|.+|.+||+.|..++.+ -+|-..|--+.|-| -|..+|+-+.
T Consensus 117 E~wk~~~~l~~H~~----DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsd 191 (942)
T KOG0973|consen 117 ESWKVVSILRGHDS----DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSD 191 (942)
T ss_pred ceeeEEEEEecCCC----ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecC
Confidence 345667777 8888 8999999999999999 9999999999999988888 89999999999999 8889999999
Q ss_pred CCcEEeeccCCC---ce---------------EEEeCCCcccccc--ccC---ceeEeccCCCcceEEeccccccceeEE
Q 000378 83 DCTIRSCDFDTE---QS---------------FVLHSPEKKMESI--SVD---TEVHLALTPLQPVVFFGFHRRMSVTVV 139 (1605)
Q Consensus 83 D~tI~~wd~~~~---q~---------------~v~~sp~~~~~~~--s~d---~~ih~a~t~~~l~vw~~~~~~~s~~~v 139 (1605)
|.||+.|+..+. +. ..-.||||+.++. +-. .++ +. .. |.+-++-
T Consensus 192 Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~-------~I--ie----R~tWk~~ 258 (942)
T KOG0973|consen 192 DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI-------AI--IE----RGTWKVD 258 (942)
T ss_pred CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee-------EE--Ee----cCCceee
Confidence 999999997662 22 6778999999983 222 233 33 55 5666655
Q ss_pred eeeecCCCCcccccccCCCceEeeeecCC------------C-----eEEEEecCceEEEEecccceEEEEEeecccccc
Q 000378 140 GTVEGGRAPTKIKTDLKKPIVNLACHPRL------------P-----VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL 202 (1605)
Q Consensus 140 gt~eG~~~~~~ik~d~kkpV~~LA~~P~~------------~-----vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~ 202 (1605)
-++-||+. ||..++|+|+. + ++|+||-|++|-+|+...-.+++-... +--
T Consensus 259 ~~LvGH~~----------p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~---lf~ 325 (942)
T KOG0973|consen 259 KDLVGHSA----------PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN---LFN 325 (942)
T ss_pred eeeecCCC----------ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh---hhc
Confidence 57999999 99999999862 2 899999999999999987777752221 133
Q ss_pred ccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 203 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 203 ~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
..|.=+.++|||.-||+.|-||+|.+-+..+
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 4677899999999999999999999888773
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=158.75 Aligned_cols=184 Identities=20% Similarity=0.250 Sum_probs=151.1
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCcee-eecc-CCcceeeeeecCCCCceEEEEecCCcEEeeccCCC--ce-
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRI-ASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--QS- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~-~~l~-~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--q~- 96 (1605)
.-..+||-|+|..|.+ +-|+-|+.|+...-... .+++ ++.+|.++|..- ..+++++.|.||+.+.+... ++
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCCCccce
Confidence 5667999999999999 88999999998876333 3366 788887777654 47899999999999999884 32
Q ss_pred ---------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeec
Q 000378 97 ---------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 97 ---------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P 166 (1605)
+++|+-+|++++ +|+|++| ++ -+ .++....-+++||.+ ||.+|-|+|
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~v-------K~--~~----~~D~s~~~~lrgh~a----------pVl~l~~~p 148 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAV-------KL--LN----LDDSSQEKVLRGHDA----------PVLQLSYDP 148 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeE-------EE--Ee----ccccchheeecccCC----------ceeeeeEcC
Confidence 999999999999 5888999 76 56 556666667999999 999999999
Q ss_pred CCCeEEEEecCceEEEEecccceEEEEEee---ccccc------------------------------------------
Q 000378 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIK------------------------------------------ 201 (1605)
Q Consensus 167 ~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~---~~~~~------------------------------------------ 201 (1605)
.+-+|||.+-||.+++||++++....||.+ |+..-
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 999999999999999999999998877765 11111
Q ss_pred ---cccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 202 ---LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 202 ---~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
..+...++|+|.|+.||.|+-+|-|.+||+.
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 0145577888888888888888888888887
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=149.08 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=168.7
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCc
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
+.|..+ ||.- .+..+-|||+...+++ +-|.+|.+|.+-+.+.-.+ .-|..+|.-+...| .|+.+++.+.|++
T Consensus 252 q~l~~~~Gh~k----ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~ 326 (506)
T KOG0289|consen 252 QILATLKGHTK----KITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGT 326 (506)
T ss_pred hhhhhccCcce----EEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCce
Confidence 456677 8888 8999999999999999 9999999999877664444 89999999999999 8999999999999
Q ss_pred EEeeccCCCc--------------eEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcc
Q 000378 86 IRSCDFDTEQ--------------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1605)
Q Consensus 86 I~~wd~~~~q--------------~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ 150 (1605)
+-+-|+.+.. ++.+|+|||-+.. ++.|+.+ +- |+ .++.+.+..|-||.+
T Consensus 327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v-------ki--wd----lks~~~~a~Fpght~--- 390 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV-------KI--WD----LKSQTNVAKFPGHTG--- 390 (506)
T ss_pred EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceE-------EE--EE----cCCccccccCCCCCC---
Confidence 9999988752 2889999999999 5899999 76 99 999999988999999
Q ss_pred cccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 151 ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
||++++|+-.|=||+++.+|+.|++||+---...-|+++|.-- +|.++-|-++|..|+.++.|=+|++.+
T Consensus 391 -------~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~---~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 391 -------PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK---EVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred -------ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc---cceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999999999999999999888776688885432 899999999999999997777776654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=151.56 Aligned_cols=197 Identities=16% Similarity=0.143 Sum_probs=151.9
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceee--------------eccCCcceeeeeecCCCCceEEEEecCCcEE
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIA--------------SIDINSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~--------------~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~ 87 (1605)
+++++.|||+|-.|.| +..--++++| +-|..+. +.+|.+.++.-+|.|.........++|+|+|
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR 294 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR 294 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence 8899999999976666 8888899999 5576654 2689999999999998889999999999999
Q ss_pred eeccCCC--ce----------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCC
Q 000378 88 SCDFDTE--QS----------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 88 ~wd~~~~--q~----------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
+||++.. |+ .-+|+|||+.|| +.-||.| +- |. .+-+++.++
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSI-------Q~--W~--~~~~~v~p~--------- 354 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSI-------QI--WD--KGSRTVRPV--------- 354 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCce-------ee--ee--cCCcccccc---------
Confidence 9999984 43 679999999999 5999999 77 77 122233332
Q ss_pred cccccccCC--CceEeeeecCCCeEEEEecCceEEEEecccceEEE-EEeeccccccccceeEeecCCceEEEEec----
Q 000378 149 TKIKTDLKK--PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY-TLQLDNTIKLLGAGAFAFHPTLEWLFVGD---- 221 (1605)
Q Consensus 149 ~~ik~d~kk--pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~-tL~~~~~~~~~g~~a~Af~P~g~~l~~G~---- 221 (1605)
-++|.-|-+ .|+|++||+||.+|+|=+.|++.|+||+-++..-- +..+=++.. .-+-.+||||-++|++|.
T Consensus 355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~--~~tdc~FSPd~kli~TGtS~~~ 432 (641)
T KOG0772|consen 355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF--PGTDCCFSPDDKLILTGTSAPN 432 (641)
T ss_pred eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccC--CCCccccCCCceEEEecccccC
Confidence 234444444 79999999999999999999999999999886432 222212222 223568999999999986
Q ss_pred --CCCeEEeeecC-CCCCeeeeec
Q 000378 222 --RRGTLLAWDVS-IERPSMIGMD 242 (1605)
Q Consensus 222 --~dgtl~~W~vs-~~~~~m~g~~ 242 (1605)
.-|+|.++|-- -++---|+|.
T Consensus 433 ~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 433 GMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred CCCCceEEEEeccceeeEEEecCC
Confidence 46889999865 4555556663
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-12 Score=145.55 Aligned_cols=222 Identities=20% Similarity=0.271 Sum_probs=165.6
Q ss_pred cccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCc-eeee--ccCCcceeeeeecCCCCceEEEEe
Q 000378 7 QHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGS-RIAS--IDINSPVVRMAYSPTSGHAVVAIL 81 (1605)
Q Consensus 7 ~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~-~~~~--l~~~~~v~~lA~SP~~g~~laa~~ 81 (1605)
+|--+|++ -|.+ .|+++.|||...+||+ |-|.+||+||-..-+ |..- +--.-+|.+|.|-| +|+.|++|-
T Consensus 161 ~hPvIRTlYDH~d----evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgT 235 (430)
T KOG0640|consen 161 RHPVIRTLYDHVD----EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGT 235 (430)
T ss_pred CCceEeehhhccC----cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEec
Confidence 45788999 8999 9999999999999999 999999999965222 2222 56678999999999 999999999
Q ss_pred cCCcEEeeccCCCce---------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeee-ec
Q 000378 82 EDCTIRSCDFDTEQS---------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV-EG 144 (1605)
Q Consensus 82 ~D~tI~~wd~~~~q~---------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~-eG 144 (1605)
+--++|++|++|-|- +|-||+.|++-. +|.||.| |+ |.|.-.| -|.|+ +.
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~I-------kl--wDGVS~r----Cv~t~~~A 302 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAI-------KL--WDGVSNR----CVRTIGNA 302 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcE-------Ee--eccccHH----HHHHHHhh
Confidence 999999999999654 899999999887 6999999 99 9965433 33342 22
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccce-eEeecCCceEE-EEecC
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG-AFAFHPTLEWL-FVGDR 222 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~-a~Af~P~g~~l-~~G~~ 222 (1605)
|.. ..|.+..|.-++..+.+.+-|-++++|.|.||..+-+-++-.+-..+--+ --.|.-+-+.+ |--.+
T Consensus 303 H~g---------sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 303 HGG---------SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA 373 (430)
T ss_pred cCC---------ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence 222 25999999999999999999999999999999988666661111111000 11243333333 34446
Q ss_pred CCeEEeeecCC-------------------CCCeeeee-----ccceeEEEEEEeeC
Q 000378 223 RGTLLAWDVSI-------------------ERPSMIGM-----DGSLQVWKTRVIIN 255 (1605)
Q Consensus 223 dgtl~~W~vs~-------------------~~~~m~g~-----~g~~~~w~~rv~~~ 255 (1605)
.+.++-||.-+ -.|+|-+| |=++..|.-||.-|
T Consensus 374 s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr~atn 430 (430)
T KOG0640|consen 374 SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRRVATN 430 (430)
T ss_pred cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeecccCC
Confidence 67777777532 23666666 56899999988654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-13 Score=162.90 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=160.0
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCC-ceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccC
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTG-SRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG-~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
-|.. .|.|+-.--+++.++. +++..+-||..-.= +.++-.+|..++.+|-|++ +-..|++|..|+|||+||+.
T Consensus 26 ~hsa----av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 26 AHSA----AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhh----hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehh
Confidence 4566 7888887788899988 67766668865421 2223388999999999998 66699999999999999998
Q ss_pred CCc---e---------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc
Q 000378 93 TEQ---S---------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI 159 (1605)
Q Consensus 93 ~~q---~---------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV 159 (1605)
..+ + +|.|+|=++..+ +|.|+.. +. |. -.--..+-+..||.- -|
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~-------~i--wD----~Rk~Gc~~~~~s~~~----------vv 157 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDL-------KI--WD----IRKKGCSHTYKSHTR----------VV 157 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEeccccccccc-------ee--hh----hhccCceeeecCCcc----------ee
Confidence 843 2 899999999998 6999888 77 98 222223336777777 89
Q ss_pred eEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeee
Q 000378 160 VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI 239 (1605)
Q Consensus 160 ~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~ 239 (1605)
..|+|+|+|.|+++|.+|.+|++||.--|...-++.. |-.-+.++-|||.--.|+.|++|+|+++||+- +=-||
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~----~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle--tfe~I 231 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS----HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE--TFEVI 231 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeeccccccccccccc----ccccccccccCchhhhhccCCCCceeeeeccc--eeEEe
Confidence 9999999999999999999999999999999988988 99999999999999999999999999999985 33456
Q ss_pred eec
Q 000378 240 GMD 242 (1605)
Q Consensus 240 g~~ 242 (1605)
|=.
T Consensus 232 ~s~ 234 (825)
T KOG0267|consen 232 SSG 234 (825)
T ss_pred ecc
Confidence 543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=151.21 Aligned_cols=194 Identities=11% Similarity=0.089 Sum_probs=157.9
Q ss_pred CCCceeEeCCCcceeeeecCceEEEEeccCCceeeeccC-CcceeeeeecCCCCceEEEEecCCcEEeeccCCC------
Q 000378 22 LQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI-NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE------ 94 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~-~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~------ 94 (1605)
-.++++||++.|+|+-++.++.|+|||+-|++.+-.++. +.++++||-+| .+..++.||+||.++..+...+
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEe
Confidence 389999999999999999999999999999999999554 55679999999 7789999999998887777664
Q ss_pred ----ce----EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 95 ----QS----FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 95 ----q~----~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
|+ ++.|+|++..++ +|.|+-| |- |+ .++.+.+-.+.-.-+ +++.-=+-=||+|.|.
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I-------ri--wd----~~~~~t~~~~~~~~d--~l~k~~~~iVWSv~~L 213 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVI-------RI--WD----VKSGQTLHIITMQLD--RLSKREPTIVWSVLFL 213 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceE-------EE--EE----cCCCceEEEeeeccc--ccccCCceEEEEEEEe
Confidence 22 899999999766 7999999 65 99 777776632222222 1111111248999999
Q ss_pred cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCC
Q 000378 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~ 236 (1605)
|--+|++|..-|+|.+||-++|+..=.... |..-|-|+|=.++...+|+++.|++|--....+..-
T Consensus 214 -rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~----h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 214 -RDSTIASGDSAGTVTFWDSIFGTLIQSHSC----HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred -ecCcEEEecCCceEEEEcccCcchhhhhhh----hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 667899999999999999999987644444 999999999999999999999999999888886643
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-12 Score=147.94 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=146.7
Q ss_pred eEeCCCc--ceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC--ce----
Q 000378 27 AAFHPNQ--ALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--QS---- 96 (1605)
Q Consensus 27 ~aF~P~g--allA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--q~---- 96 (1605)
.+|-+.. -.+.+ +.|++.++||--++..+.+ .+|...|.++-|+| +...+++++.|..||.|-.-+. ++
T Consensus 223 ~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~ 301 (506)
T KOG0289|consen 223 TALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRP 301 (506)
T ss_pred eEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCcccccc
Confidence 4444443 56666 8999999999999999999 99999999999999 8889999999999999998773 22
Q ss_pred ------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC
Q 000378 97 ------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 97 ------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~ 169 (1605)
.+--+|.|+++- +|.|++. +|.--.++..+ |+--|.. . .-.+.+.||||||=
T Consensus 302 h~~~V~~ls~h~tgeYllsAs~d~~w-------------~Fsd~~~g~~l-t~vs~~~-----s--~v~~ts~~fHpDgL 360 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGEYLLSASNDGTW-------------AFSDISSGSQL-TVVSDET-----S--DVEYTSAAFHPDGL 360 (506)
T ss_pred ccccceeeeeccCCcEEEEecCCceE-------------EEEEccCCcEE-EEEeecc-----c--cceeEEeeEcCCce
Confidence 555568999885 4666554 23334445554 3222211 0 12589999999999
Q ss_pred eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 170 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.+..|..||.+|+||+.+..+.-.+-+ |.+.|.+++|+-+|-||+|+.+|+.+++||+-
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpg----ht~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPG----HTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCC----CCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 999999999999999999999888888 99999999999999999999999999999986
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=154.49 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=153.9
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeeec----cCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC---
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASI----DINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--- 94 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l----~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--- 94 (1605)
.+-|+|-++=|-.... .-..+|..|+...|....+. .|..+|..+|--- -+..+++++.||-++.||+...
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCccee
Confidence 6778899999988777 55669999999999998885 8999999999876 4468999999999999999874
Q ss_pred --------ceEEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 95 --------QSFVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 95 --------q~~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
.+++.|+-...++++ ..|..| .|.+ .-++++|-.+.||++ -|+.+.||
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I---------~vvD----~~t~kvvR~f~gh~n----------ritd~~FS 585 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSI---------RVVD----VVTRKVVREFWGHGN----------RITDMTFS 585 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeE---------EEEE----chhhhhhHHhhcccc----------ceeeeEeC
Confidence 348888888888885 666666 3467 778888888999999 99999999
Q ss_pred cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCC-CeEEeee
Q 000378 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR-GTLLAWD 230 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~d-gtl~~W~ 230 (1605)
|||.||++|+-|++||.||+-|+..+ |..+=...+.++.|+|+|+.|+|-..| .-|++|-
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lI-----D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLI-----DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCccee-----eeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99999999999999999999999987 555566788899999999999988877 7799993
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=148.40 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=158.9
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|++.+.+.+-++ ||.+ .|-|+-|.-+-.-+++ +-|++||+||.-.+.=+.+...+..+..|+-++ +.+++|
T Consensus 246 Wnvd~~r~~~TLsGHtd----kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~---~~~~Sg 318 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTD----KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI---SDVISG 318 (459)
T ss_pred eeccchhhhhhhccccc----ceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecc---eeeeec
Confidence 999997777777 9999 9999999877665555 999999999998877777788899999999986 899999
Q ss_pred ecCCcEEeeccCCC-ce----------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCC
Q 000378 81 LEDCTIRSCDFDTE-QS----------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~-q~----------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
-.|.+||+||.-+. .+ +|--|++|..+-. |.|.++ .. .. ..+....+++..-.-
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl-------~v--iD----lRt~eI~~~~sA~g~- 384 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTL-------KV--ID----LRTKEIRQTFSAEGF- 384 (459)
T ss_pred ccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCce-------ee--ee----cccccEEEEeecccc-
Confidence 99999999996553 11 7888888887764 667666 33 33 223333334322211
Q ss_pred cccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEe
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 228 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~ 228 (1605)
|+-. -+.-+.|||++..+++||.||.|.+|++.++..-..|.+ ++-+. ++.+++|.|.|.-|...|+++...+
T Consensus 385 ---k~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~-aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 385 ---KCAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNA-AITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred ---cccc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCc-ceEEEEEcCCCchhhcccCCcceEe
Confidence 2222 278889999999999999999999999999999988877 22222 8999999999999999999999999
Q ss_pred ee
Q 000378 229 WD 230 (1605)
Q Consensus 229 W~ 230 (1605)
|+
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 96
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=132.00 Aligned_cols=198 Identities=19% Similarity=0.193 Sum_probs=162.6
Q ss_pred CCceeEeCCCcceeee-ecCceEEEE--ec----cCCceeeeccCCcceeeeeec--CCC-CceEEEEe-cCCcEEeecc
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEF--DT----LTGSRIASIDINSPVVRMAYS--PTS-GHAVVAIL-EDCTIRSCDF 91 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~--d~----~tG~~~~~l~~~~~v~~lA~S--P~~-g~~laa~~-~D~tI~~wd~ 91 (1605)
.+-|.||||+|.+||+ |-|++||+. ++ +||-.+.---|...|..|||- |.. |.+|+++. -||.|+.=|-
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 6789999999999999 999999984 43 456666666788999999997 544 46666654 5999999888
Q ss_pred CCCce-----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEee-eecCCCCcccccccCCC
Q 000378 92 DTEQS-----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 92 ~~~q~-----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~d~kkp 158 (1605)
-++|. .-+|+=.|-|++ +|-|.|| |. |. ..-...+.++++ +.++.- -...
T Consensus 171 ~~g~~~~a~sghtghilalyswn~~m~~sgsqdkti-------rf--wd-lrv~~~v~~l~~~~~~~gl-------essa 233 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTI-------RF--WD-LRVNSCVNTLDNDFHDGGL-------ESSA 233 (350)
T ss_pred CCCCcceeecCCcccEEEEEEecCcEEEccCCCceE-------EE--Ee-eeccceeeeccCcccCCCc-------ccce
Confidence 77655 556778888888 7899999 88 66 222347788885 666651 0127
Q ss_pred ceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC----CC
Q 000378 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS----IE 234 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs----~~ 234 (1605)
|.++|.-|.|.+|++|-+|..--+|||.-+..+-.+-- |..-++|+-|+|..-.+.+||-|-.|++=|+- -+
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p----hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP----HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC----CccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 99999999999999999999999999999999878888 99999999999999999999999999998876 78
Q ss_pred CCeeeee
Q 000378 235 RPSMIGM 241 (1605)
Q Consensus 235 ~~~m~g~ 241 (1605)
-|+|+=-
T Consensus 310 l~~~vv~ 316 (350)
T KOG0641|consen 310 LPIMVVA 316 (350)
T ss_pred CceEEEE
Confidence 8888754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=135.92 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=165.8
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCc
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
++++.+ ++-+ +|+++-|.-||.+..+ +-|++|+||+++.|..|.+ -+|+--|--+|.|- |...++++..|..
T Consensus 8 kr~~~l~~~qg----aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 8 KRLSILDCAQG----AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKA 82 (307)
T ss_pred hhceeeccccc----ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCce
Confidence 456666 6677 8999999999999888 9999999999999999999 99999999999998 6678999999999
Q ss_pred EEeeccCCCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccc
Q 000378 86 IRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK 152 (1605)
Q Consensus 86 I~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik 152 (1605)
|..||+.|++. .|.|+-+...++ +|-|.++ |+ |. -|-.++.+|+++.-.++
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~-------r~--wD--CRS~s~ePiQildea~D----- 146 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSV-------RL--WD--CRSRSFEPIQILDEAKD----- 146 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEecccccee-------EE--EE--cccCCCCccchhhhhcC-----
Confidence 99999999744 899999998887 7999999 88 87 55678999988888888
Q ss_pred cccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 153 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 153 ~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.|-++-.. .--+..||.||++|-|||..|+.. -|.- ...|.|+.|+|||.-+..|+-|+||+|-|-+
T Consensus 147 -----~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~----sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 147 -----GVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS----SDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred -----ceeEEEec--ccEEEeeccCCcEEEEEeecceee----hhhc--CCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 88887664 446788999999999999988655 3322 2468899999999999999999999999877
Q ss_pred CC
Q 000378 233 IE 234 (1605)
Q Consensus 233 ~~ 234 (1605)
+-
T Consensus 214 tG 215 (307)
T KOG0316|consen 214 TG 215 (307)
T ss_pred hh
Confidence 43
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-12 Score=140.88 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=140.2
Q ss_pred cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE 94 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~ 94 (1605)
.|+. ++-+-+|+++-..+-.+.|..|+.+|..||....+..|..+|..|.|++..| .+++|++|.+||+||.-.+
T Consensus 52 ~~~~----plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 52 KHGA----PLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred ecCC----ceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccc
Confidence 5677 8899999998888888999999999999999999999999999999999555 7899999999999998743
Q ss_pred ceEEEeCCCc----------cccccccCceeEeccCC-CcceEEecccc----------------ccceeEEeeeec---
Q 000378 95 QSFVLHSPEK----------KMESISVDTEVHLALTP-LQPVVFFGFHR----------------RMSVTVVGTVEG--- 144 (1605)
Q Consensus 95 q~~v~~sp~~----------~~~~~s~d~~ih~a~t~-~~l~vw~~~~~----------------~~s~~~vgt~eG--- 144 (1605)
+.--.+...+ +.+-+..|..||+=.-+ +.. .| -+ -.++.+++++||
T Consensus 127 ~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~--~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVa 202 (323)
T KOG1036|consen 127 VVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE--PF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVA 202 (323)
T ss_pred ccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccc--hh--hhccccceeEEEEEEEecCCCceEEEeecceEE
Confidence 2211111111 11112333333332211 111 00 00 114445555555
Q ss_pred -------------------CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccc
Q 000378 145 -------------------GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGA 205 (1605)
Q Consensus 145 -------------------~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~ 205 (1605)
|+.-. =-+++--||.++||||..++||+|+.||.|-.||+++-..++-|-. --..|
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~-~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----~~~SI 277 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSE-KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----YETSI 277 (323)
T ss_pred EEccCCchHHhhhceeEEeeeccc-CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----CCCce
Confidence 33311 1145567999999999999999999999999999999999977766 23458
Q ss_pred eeEeecCCceEEEEec
Q 000378 206 GAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 206 ~a~Af~P~g~~l~~G~ 221 (1605)
.+++|+-||+.||+|+
T Consensus 278 ~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIAS 293 (323)
T ss_pred EEEEeccCCCeEEEEe
Confidence 9999999999999987
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=148.96 Aligned_cols=195 Identities=13% Similarity=0.075 Sum_probs=163.3
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEe
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL 81 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~ 81 (1605)
|.+.|...+.++ ||.. .|-|++---++.+|-.|||++.++|- .+.+.-+..+|.++|+++++=| .+ ++++||
T Consensus 86 ~~~~~~~P~~~LkgH~s----nVC~ls~~~~~~~iSgSWD~TakvW~-~~~l~~~l~gH~asVWAv~~l~-e~-~~vTgs 158 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKS----NVCSLSIGEDGTLISGSWDSTAKVWR-IGELVYSLQGHTASVWAVASLP-EN-TYVTGS 158 (745)
T ss_pred EecCCCCchhhhhcccc----ceeeeecCCcCceEecccccceEEec-chhhhcccCCcchheeeeeecC-CC-cEEecc
Confidence 566777788888 9999 99999988888855559999999996 4455555699999999999999 44 999999
Q ss_pred cCCcEEeeccCC-Cce---------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccc
Q 000378 82 EDCTIRSCDFDT-EQS---------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI 151 (1605)
Q Consensus 82 ~D~tI~~wd~~~-~q~---------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i 151 (1605)
.|.+||+|.=.+ .++ .++.-|++..+..|.|+-| |+ |. +++.++-..+||++
T Consensus 159 aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~I-------r~--w~-----~~ge~l~~~~ghtn---- 220 (745)
T KOG0301|consen 159 ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSI-------RL--WD-----LDGEVLLEMHGHTN---- 220 (745)
T ss_pred CcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceE-------EE--Ee-----ccCceeeeeeccce----
Confidence 999999999876 344 6778899999999999999 88 98 58888889999999
Q ss_pred ccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 152 KTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 152 k~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
=|-++.-.++++..++.++||++|+|+.. +..-.+++ -..-+-+.-+=++|++ +||+.||+|++|-+
T Consensus 221 ------~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l----PttsiWsa~~L~NgDI-vvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 221 ------FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL----PTTSIWSAKVLLNGDI-VVGGSDGRVRVFTV 287 (745)
T ss_pred ------EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec----CccceEEEEEeeCCCE-EEeccCceEEEEEe
Confidence 89999977888999999999999999988 44435555 3345667778888885 57889999999988
Q ss_pred CCCC
Q 000378 232 SIER 235 (1605)
Q Consensus 232 s~~~ 235 (1605)
+..|
T Consensus 288 ~k~R 291 (745)
T KOG0301|consen 288 DKDR 291 (745)
T ss_pred cccc
Confidence 7665
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-12 Score=149.21 Aligned_cols=198 Identities=22% Similarity=0.225 Sum_probs=143.1
Q ss_pred CCceeEeCCCcc--eeee-ecCceEEEEeccC-Cceeee----ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC
Q 000378 23 QPHEAAFHPNQA--LIAV-AIGTYIIEFDTLT-GSRIAS----IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE 94 (1605)
Q Consensus 23 ~v~~~aF~P~ga--llA~-a~g~~I~l~d~~t-G~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~ 94 (1605)
++-|++|||.-- ++|| +-++.|-+||..| +....- ..|+.+|.+|-|||++-..+.+.++|||||+-||...
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 889999999864 8888 7788999999843 333333 7788999999999999999999999999999999988
Q ss_pred ceEEEeCCC--ccccc---cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC
Q 000378 95 QSFVLHSPE--KKMES---ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 95 q~~v~~sp~--~~~~~---~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~ 169 (1605)
+-...|+-+ ..++. .+.+... |.||-|-- ..+++.+=.+++.-- --+-+||.|.++||+|..|
T Consensus 268 i~e~v~s~~~d~~~fs~~d~~~e~~~----------vl~~~~~G-~f~~iD~R~~~s~~~-~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 268 ISEEVLSLDTDNIWFSSLDFSAESRS----------VLFGDNVG-NFNVIDLRTDGSEYE-NLRLHKKKITSVALNPVCP 335 (498)
T ss_pred hhHHHhhcCccceeeeeccccCCCcc----------EEEeeccc-ceEEEEeecCCccch-hhhhhhcccceeecCCCCc
Confidence 777777763 32222 1222222 22321111 223343322222211 1234677999999999877
Q ss_pred -eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 170 -VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 170 -vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
+|++||.|++.|+||+-+-...-...+-..=|.-.|.|.-|||+|-.|+|-+.|.+|++||.+
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 589999999999999987655532111122367789999999999999999999999999996
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-12 Score=145.81 Aligned_cols=211 Identities=14% Similarity=0.127 Sum_probs=163.9
Q ss_pred ccccccc--ccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceE
Q 000378 3 WATVQHL--DLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 3 W~~~~~~--~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~l 77 (1605)
|.+.-++ .+.++ |-.+ .+.++.|-++++.+.+ +-|++.++|++..++...+ -+|...|.++-|.- +-+.+
T Consensus 202 W~v~~~k~~~~~tLaGs~g----~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~v 276 (459)
T KOG0288|consen 202 WNVLGEKSELISTLAGSLG----NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRV 276 (459)
T ss_pred hhcccchhhhhhhhhccCC----CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccce
Confidence 6666665 55566 7667 8999999999998777 9999999999999999999 88999999999997 44559
Q ss_pred EEEecCCcEEeeccCCCc---eEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccccc
Q 000378 78 VAILEDCTIRSCDFDTEQ---SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q---~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
|+|++|.|||+||+.... +...-|...-+.. ++.-...|..=+ +|. |. --+.+.+-.+++|+-
T Consensus 277 Vsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk-vRf--wD----~Rs~~~~~sv~~gg~------ 343 (459)
T KOG0288|consen 277 VSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK-VRF--WD----IRSADKTRSVPLGGR------ 343 (459)
T ss_pred eeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc-eEE--Ee----ccCCceeeEeecCcc------
Confidence 999999999999997631 1111111111111 000011122212 377 88 556666668888886
Q ss_pred ccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 154 d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
|++|-.++++--|-|.+-|.++.+.|+-|+++.-++..+.---+.-...+-||||++.++.||.||.+++|.+.+
T Consensus 344 -----vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 344 -----VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred -----eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 999999999888888899999999999999999899887666666788999999999999999999999999997
Q ss_pred CCC
Q 000378 234 ERP 236 (1605)
Q Consensus 234 ~~~ 236 (1605)
+.=
T Consensus 419 gKl 421 (459)
T KOG0288|consen 419 GKL 421 (459)
T ss_pred ceE
Confidence 653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-12 Score=143.04 Aligned_cols=165 Identities=18% Similarity=0.240 Sum_probs=131.6
Q ss_pred cccc-cCCCCCCCCCceeEeCC--CcceeeeecCceEEEEeccCCce----eeeccCCcceeeeeecCCCCceEEEEecC
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHP--NQALIAVAIGTYIIEFDTLTGSR----IASIDINSPVVRMAYSPTSGHAVVAILED 83 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P--~gallA~a~g~~I~l~d~~tG~~----~~~l~~~~~v~~lA~SP~~g~~laa~~~D 83 (1605)
|-++ ||++ -=-+++||| +|++|--.|-+.|.+|...||.= .+.++|.++|--|++||+--.++|+++-|
T Consensus 204 l~t~~ghk~----EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 204 LFTFNGHKG----EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred eEEecccCc----cceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence 3344 5665 456899999 77776557888999999999873 44489999999999999999999999999
Q ss_pred CcEEeeccCCC--ceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceE
Q 000378 84 CTIRSCDFDTE--QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN 161 (1605)
Q Consensus 84 ~tI~~wd~~~~--q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~ 161 (1605)
++||+||+-.. .+||.. ..|.. -|.-
T Consensus 280 gsIrIWDiRs~~~~~~~~~------------------------------------------kAh~s----------DVNV 307 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST------------------------------------------KAHNS----------DVNV 307 (440)
T ss_pred ceEEEEEecCCCccceeEe------------------------------------------eccCC----------ceee
Confidence 99999999553 234333 22222 3444
Q ss_pred eeeecCCCeEEEEecCceEEEEeccc---ceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEeeecCCCC
Q 000378 162 LACHPRLPVLYVAYADGLIRAYNIHT---YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~dg~IR~w~i~t---~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs~~~ 235 (1605)
+-++-+-++||+|++||++++||+.+ +++..++.- |-..+.++.|||.-.-++ +++.|..|.|||++.|.
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~----Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY----HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe----ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 44555667999999999999999865 566678888 999999999999987766 99999999999999665
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-11 Score=135.15 Aligned_cols=197 Identities=16% Similarity=0.215 Sum_probs=156.4
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCc---ceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecC
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQ---ALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILED 83 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~g---allA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D 83 (1605)
.++..+ .|.+ .+.|+-|.|+- -||+.+.|..|.+||+..=..+-+ -.|...|+-|+--| .|..-.+.+.|
T Consensus 74 ~qlg~ll~Hag----sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D 148 (362)
T KOG0294|consen 74 KQLGILLSHAG----SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGD 148 (362)
T ss_pred hhhcceecccc----ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCC
Confidence 455566 7888 99999999998 577779999999999875555555 78889999999999 88888899999
Q ss_pred CcEEeeccCCCce-----------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccc
Q 000378 84 CTIRSCDFDTEQS-----------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK 152 (1605)
Q Consensus 84 ~tI~~wd~~~~q~-----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik 152 (1605)
.++|+||+.+++. .|.|+|.|..-.++....| -+|- .-+- +|=
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i---------~i~q----~d~A-------------~v~ 202 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI---------DIYQ----LDNA-------------SVF 202 (362)
T ss_pred ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEE---------EEEe----cccH-------------hHh
Confidence 9999999999643 7888888886654333333 1132 2222 333
Q ss_pred cccCCC--ceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEee--cCCceEEEEecCCCeEEe
Q 000378 153 TDLKKP--IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF--HPTLEWLFVGDRRGTLLA 228 (1605)
Q Consensus 153 ~d~kkp--V~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af--~P~g~~l~~G~~dgtl~~ 228 (1605)
..+.+| +-|+-|- ++-.|+||.+|+.|++||-.+..+.+-+.. |-.-|-+|+| .|+++.|++.|.||.|++
T Consensus 203 ~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A----H~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 203 REIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA----HENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec----chhheeeeEEEecCCceEEEEeccCceEEE
Confidence 333445 3344443 788999999999999999999999988999 9999999996 899999999999999999
Q ss_pred eecCCC---CCeeeee
Q 000378 229 WDVSIE---RPSMIGM 241 (1605)
Q Consensus 229 W~vs~~---~~~m~g~ 241 (1605)
||++.+ ||+..+-
T Consensus 278 Wd~~~~~k~~~~~l~e 293 (362)
T KOG0294|consen 278 WDIDMETKKRPTLLAE 293 (362)
T ss_pred EEccccccCCcceeEE
Confidence 999955 8888876
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-12 Score=140.27 Aligned_cols=209 Identities=19% Similarity=0.179 Sum_probs=169.2
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCc
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
..+|.+ ||.+ .+--+|--..+.++++ |.|.+-.+|...+|+-+.. .+|..+|++++|+| .|..++.++-|+|
T Consensus 139 ~lvre~~GHkD----GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 139 RLVRELEGHKD----GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDET 213 (481)
T ss_pred eehhhhccccc----ceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcc
Confidence 455666 8988 8888888899999999 9999999999999999988 99999999999999 8899999999999
Q ss_pred EEeeccCC--Cce----EEEeCCCccccc-----------cccC-ceeEeccCCCcceEEeccccccceeEEeeeecCCC
Q 000378 86 IRSCDFDT--EQS----FVLHSPEKKMES-----------ISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1605)
Q Consensus 86 I~~wd~~~--~q~----~v~~sp~~~~~~-----------~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~ 147 (1605)
-|+|...- +-+ ---||.+.+.+. .++| -+| +.++--+.||++
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti--------------------RvPl~~ltgH~~ 273 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI--------------------RVPLMRLTGHRA 273 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee--------------------eeeeeeeecccc
Confidence 99998543 222 122232222110 1111 122 234445899999
Q ss_pred CcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEE
Q 000378 148 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 148 ~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~ 227 (1605)
+|.+--+.--++-.++||||++.-+||++||++.-.|.+ |..-..-..-||+-+.+++.|+|-|.+
T Consensus 274 ----------vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG----Hd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 274 ----------VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG----HDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred ----------ceEehhhhcCcceeeeeeccccceeeeeccCceeccccC----cchhccccccCCcceEEEEeccCceeE
Confidence 887777778999999999999999999999999999999 999988889999999999999999999
Q ss_pred eeecCCCCCeeeee-----------------------ccceeEEEEEEeeCC
Q 000378 228 AWDVSIERPSMIGM-----------------------DGSLQVWKTRVIINP 256 (1605)
Q Consensus 228 ~W~vs~~~~~m~g~-----------------------~g~~~~w~~rv~~~~ 256 (1605)
+||.-+.-++.-=| |-+++||..|-+-.|
T Consensus 340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred eccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc
Confidence 99998777776655 458999999954433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=135.37 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=153.3
Q ss_pred ccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecC
Q 000378 6 VQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED 83 (1605)
Q Consensus 6 ~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D 83 (1605)
.+++-||-. ||.. +|.+++-+|=+-.+.+ |.|++|++||.++-+-.-.+... +=.-.||.| .|-+.|+++..
T Consensus 88 ~dNkylRYF~GH~~----~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp-~GLifA~~~~~ 161 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKK----RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDP-EGLIFALANGS 161 (311)
T ss_pred ecCceEEEcCCCCc----eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECC-CCcEEEEecCC
Confidence 355778999 9999 9999999999988888 99999999998843333233332 223469999 77799999999
Q ss_pred CcEEeeccCCC-----ce------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCC
Q 000378 84 CTIRSCDFDTE-----QS------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 84 ~tI~~wd~~~~-----q~------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
..|+++|+-.. ++ -+-||||||.+=+|.+...| .+..+|. +++..|++++.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~--------~~lDAf~----G~~~~tfs~~~ 229 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFI--------YLLDAFD----GTVKSTFSGYP 229 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcE--------EEEEccC----CcEeeeEeecc
Confidence 99999998662 11 88999999999887774442 2256444 44888999998
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeE
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 226 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl 226 (1605)
..- +-| -+-.|+||++++.+|+.||+|-+||++||...-.+++. +-..+.++-|.|---+.+++| -+|
T Consensus 230 ~~~------~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~---~~~~~~~~~fnP~~~mf~sa~--s~l 297 (311)
T KOG1446|consen 230 NAG------NLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP---NGGPVSCVRFNPRYAMFVSAS--SNL 297 (311)
T ss_pred CCC------Ccc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC---CCCCccccccCCceeeeeecC--ceE
Confidence 822 224 45567799999999999999999999999988788774 567788889999998888765 467
Q ss_pred EeeecC
Q 000378 227 LAWDVS 232 (1605)
Q Consensus 227 ~~W~vs 232 (1605)
-+|=-+
T Consensus 298 ~fw~p~ 303 (311)
T KOG1446|consen 298 VFWLPD 303 (311)
T ss_pred EEEecc
Confidence 777443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=142.85 Aligned_cols=206 Identities=17% Similarity=0.233 Sum_probs=167.8
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceee----e---------------ccCCcceeeeeecCCCCceEEEEec
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIA----S---------------IDINSPVVRMAYSPTSGHAVVAILE 82 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~----~---------------l~~~~~v~~lA~SP~~g~~laa~~~ 82 (1605)
.|-|++++||....-+ |=+++|..||+.||+++. . .+|..-+-+||-|| ||..||.|..
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgkylatgg~ 222 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGKYLATGGR 222 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCcEEEecCC
Confidence 7899999999999888 889999999999999661 1 15666788999999 9999999999
Q ss_pred CCcEEeeccCCCce------------EEEeC-CCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCc
Q 000378 83 DCTIRSCDFDTEQS------------FVLHS-PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1605)
Q Consensus 83 D~tI~~wd~~~~q~------------~v~~s-p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~ 149 (1605)
|.-|.+||.+|.+. +.+|- --.+...+|.|++| +. |+ ......|.|+.||-+
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsv-------kv--w~----~~~~s~vetlyGHqd-- 287 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSV-------KV--WS----IDQLSYVETLYGHQD-- 287 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCce-------EE--Ee----hhHhHHHHHHhCCcc--
Confidence 99999999999321 44443 33445558999999 77 99 888888999999999
Q ss_pred ccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEee
Q 000378 150 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 150 ~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
-|.++--.-+..++-||.-|+++|+|.|..-+.+ +..+ |-+-+.|+||=- -+++++||++|.|.||
T Consensus 288 --------~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg----~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 288 --------GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRG----GEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred --------ceeeechhcccceEEeccccceeEEEecccccee-eeeC----CCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 9999999999999999999999999999666555 8888 777888999964 4678899999999999
Q ss_pred ecCCCCCeeee-----ec---cceeE--EEEEEeeCCCC
Q 000378 230 DVSIERPSMIG-----MD---GSLQV--WKTRVIINPNR 258 (1605)
Q Consensus 230 ~vs~~~~~m~g-----~~---g~~~~--w~~rv~~~~~~ 258 (1605)
.+-.-+|-.+= +. +.++- |.+-|.+-|+.
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s 392 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS 392 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccC
Confidence 99988876542 21 22333 77777666654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-11 Score=139.82 Aligned_cols=181 Identities=11% Similarity=0.034 Sum_probs=127.1
Q ss_pred CCceeEeCCCcceeee-e---cCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE-ecCC--cEEeeccCCCc
Q 000378 23 QPHEAAFHPNQALIAV-A---IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI-LEDC--TIRSCDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a---~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~-~~D~--tI~~wd~~~~q 95 (1605)
.+.+.+|||||+.||. + .+..|.+||..+|...........+.+.+||| ||..|+.. ..++ .|++||+++.+
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 5789999999999996 3 34689999999998766655556677899999 78766654 4454 59999998742
Q ss_pred e-----------EEEeCCCccccccccC--ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEe
Q 000378 96 S-----------FVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 96 ~-----------~v~~sp~~~~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~L 162 (1605)
. ...|||||+.+..++| +.. ++|+++ ..+... ..+..+.. .+.+.
T Consensus 279 ~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~-------~Iy~~d----~~~g~~-~~lt~~~~----------~~~~~ 336 (429)
T PRK03629 279 IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRP-------QVYKVN----INGGAP-QRITWEGS----------QNQDA 336 (429)
T ss_pred EEEccCCCCCcCceEECCCCCEEEEEeCCCCCc-------eEEEEE----CCCCCe-EEeecCCC----------CccCE
Confidence 2 7889999999885433 333 565555 332222 12222222 45678
Q ss_pred eeecCCCeEEEEecC---ceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCe---EEeeecC
Q 000378 163 ACHPRLPVLYVAYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT---LLAWDVS 232 (1605)
Q Consensus 163 A~~P~~~vL~~a~~d---g~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgt---l~~W~vs 232 (1605)
+|||||..|+..+.+ ..|.+||+.+++.. .|+.. ....+..|+|||++|+..+.++. |.+|+++
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-----~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-----FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-----CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 999999998776543 35888999999876 55531 12347889999999996665553 6777776
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-11 Score=133.56 Aligned_cols=214 Identities=18% Similarity=0.134 Sum_probs=166.1
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccC
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
||-- +.--+-|..+|-||-+ |-|..+.+|=.+.|.++-+ .+|...|+.+.-+= +...|+.|++|.|+||||+.
T Consensus 8 GHER----plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHER----PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCcc----ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcC
Confidence 5555 5677899999999999 9999999999999999999 99999999999987 66789999999999999999
Q ss_pred CCce-----------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceE
Q 000378 93 TEQS-----------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN 161 (1605)
Q Consensus 93 ~~q~-----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~ 161 (1605)
+++- .|-||++|..+..+.|... --...|-+|-.....+ ..-+..+-.||-+-- +.|++
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m----g~~~~v~~fdi~~~~~-----~~~s~ep~~kI~t~~-skit~ 152 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQM----GYTCFVSVFDIRDDSS-----DIDSEEPYLKIPTPD-SKITS 152 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhc----CcceEEEEEEccCChh-----hhcccCceEEecCCc-cceee
Confidence 9633 8899999999888887322 0002222231111111 112333333444433 45677
Q ss_pred eeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeee
Q 000378 162 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~ 241 (1605)
.-+.|-+..|++|-+||.|+.||+.||....-- -.+|...+..+-|+||.-..++||+|.|-+|||+.+
T Consensus 153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s---~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-------- 221 (327)
T KOG0643|consen 153 ALWGPLGETIIAGHEDGSISIYDARTGKELVDS---DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT-------- 221 (327)
T ss_pred eeecccCCEEEEecCCCcEEEEEcccCceeeec---hhhhccccccccccCCcceEEecccCccceeeeccc--------
Confidence 778999999999999999999999999766321 134999999999999999999999999999999974
Q ss_pred ccceeEEEEEEeeCCC
Q 000378 242 DGSLQVWKTRVIINPN 257 (1605)
Q Consensus 242 ~g~~~~w~~rv~~~~~ 257 (1605)
|+|-||=+.--|-
T Consensus 222 ---l~v~Kty~te~Pv 234 (327)
T KOG0643|consen 222 ---LEVLKTYTTERPV 234 (327)
T ss_pred ---eeeEEEeeecccc
Confidence 6777777765553
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.1e-11 Score=138.85 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=126.1
Q ss_pred CCceeEeCCCcceeee-ec---CceEEEEeccCCceeeeccCCcceeeeeecCCCCceE-EEEecCC--cEEeeccCCCc
Q 000378 23 QPHEAAFHPNQALIAV-AI---GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAV-VAILEDC--TIRSCDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~---g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~l-aa~~~D~--tI~~wd~~~~q 95 (1605)
.+.+.+|||||+.||. +. +..|.+||..+|...........+.+.+||| ||..| ++.+.|+ .|++||+.+.+
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCC
Confidence 6789999999999997 43 3479999999998877766555667899999 67544 4556666 59999998753
Q ss_pred -----------eEEEeCCCccccccccC--ceeEeccCCCcceEEecccccccee--EEeeeecCCCCcccccccCCCce
Q 000378 96 -----------SFVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMSVT--VVGTVEGGRAPTKIKTDLKKPIV 160 (1605)
Q Consensus 96 -----------~~v~~sp~~~~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s~~--~vgt~eG~~~~~~ik~d~kkpV~ 160 (1605)
....|||||+.+..++| ++. ++++++ ..+.. .+ |.+|+ ...
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~-------~iy~~d----l~~g~~~~l-t~~g~------------~~~ 339 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRP-------QIYRVA----ASGGSAERL-TFQGN------------YNA 339 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCc-------eEEEEE----CCCCCeEEe-ecCCC------------Ccc
Confidence 26789999999885444 343 566666 33322 22 33332 345
Q ss_pred EeeeecCCCeEEEEecCc---eEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCe--EEeeecC
Q 000378 161 NLACHPRLPVLYVAYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGT--LLAWDVS 232 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a~~dg---~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgt--l~~W~vs 232 (1605)
+.+|||||..||..+.++ .|.+||+.++... .|..+ ......+|+|||++|+ +..++|+ |.+|+++
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-----~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-----SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-----CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 789999999998776443 6999999999876 44431 2345679999999887 4444444 5555554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=149.08 Aligned_cols=189 Identities=18% Similarity=0.167 Sum_probs=156.9
Q ss_pred CCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce---
Q 000378 22 LQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~--- 96 (1605)
++.++++|+.+|.++|. |.|.+||+-+..+++...+ .+|.++|-.|.|+| .|..||+..-||+|+.||+.++..
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhh
Confidence 58899999999999999 9999999999999999888 89999999999999 889999999999999999988521
Q ss_pred -----------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCC
Q 000378 97 -----------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 97 -----------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkp 158 (1605)
.++++|+|++++ .+.|++| +|++ +..-....++.+--. .--
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V---------kvy~----r~~we~~f~Lr~~~~--------ss~ 234 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV---------KVYS----RKGWELQFKLRDKLS--------SSK 234 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeE---------EEEc----cCCceeheeeccccc--------ccc
Confidence 789999988888 5999999 4477 777666665543222 112
Q ss_pred ceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCee
Q 000378 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 238 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m 238 (1605)
+..++|+|.|..||++.-||.|-+||++| ||+ .+ +.--|.+.||+|++--|-+=+.-|++-.|.- .-.+||
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t---~~~-~~----~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~~-iv~~S~ 305 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDT---HER-HE----FKRAVCCEAWKPNANAITLITALGTLGVSPA-IVPNSG 305 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEeccc---chh-cc----ccceeEEEecCCCCCeeEEEeeccccccChh-hccccc
Confidence 89999999999999999999999999999 655 44 6678999999999998887777777766654 333444
Q ss_pred eee
Q 000378 239 IGM 241 (1605)
Q Consensus 239 ~g~ 241 (1605)
-|.
T Consensus 306 ~~~ 308 (933)
T KOG1274|consen 306 LSV 308 (933)
T ss_pred ccc
Confidence 443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=134.29 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=120.5
Q ss_pred cCCCCCCCCCceeEeCCCc-ceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 15 GRGDHKPLQPHEAAFHPNQ-ALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~g-allA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
||.+ .+..+-|-..- .+|-++.|++|++||..||.+..+|....+|.+|-+|+ ||+ ++.+.+..+|++||..+
T Consensus 141 ghtg----~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~-ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 141 GHTG----GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGR-ILTIAYGSSVKFWDAKS 214 (334)
T ss_pred CCCC----cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCC-EEEEecCceeEEecccc
Confidence 6666 78888885554 45555999999999999999999999999999999999 885 46788999999999998
Q ss_pred Cce-----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEee-eecCCCCcccccccCCCce
Q 000378 94 EQS-----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPTKIKTDLKKPIV 160 (1605)
Q Consensus 94 ~q~-----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~d~kkpV~ 160 (1605)
... +---+|++.+.- +..|.-+ ..|. -.++..+|- ..||-. ||-
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~---------~kfD----y~TgeEi~~~nkgh~g----------pVh 271 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKV---------YKFD----YNTGEEIGSYNKGHFG----------PVH 271 (334)
T ss_pred ccceeeccCccccccccccCCCceEEecCcceEE---------EEEe----ccCCceeeecccCCCC----------ceE
Confidence 422 444567776553 5667655 3466 678888987 599999 999
Q ss_pred EeeeecCCCeEEEEecCceEEEEecccce
Q 000378 161 NLACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a~~dg~IR~w~i~t~~ 189 (1605)
||-|+|||.+-|+||.||+||+|-+.-+.
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99999999999999999999999876554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=135.36 Aligned_cols=182 Identities=19% Similarity=0.193 Sum_probs=146.3
Q ss_pred CCceeEeCCCc--ceeeeecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC---
Q 000378 23 QPHEAAFHPNQ--ALIAVAIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--- 94 (1605)
Q Consensus 23 ~v~~~aF~P~g--allA~a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--- 94 (1605)
.+-.++|+++- +++|++.|..+++|| +|-..-++ .+|-.-|.++-|++.++..++..++||||||||-+-.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 55678888764 566668899999999 55444344 8999999999999999977777799999999998774
Q ss_pred ce---------EEEeCCCcc-ccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEee
Q 000378 95 QS---------FVLHSPEKK-MES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLA 163 (1605)
Q Consensus 95 q~---------~v~~sp~~~-~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA 163 (1605)
+| ..+|||--. ..+ .|.|++. |+ |+ -|..++.. .+|.|.. -|.+.-
T Consensus 141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l-------~l--wd---vr~~gk~~-~i~ah~~----------Eil~cd 197 (311)
T KOG0277|consen 141 QTFNGHNSCIYQAAFSPHIPNLFASASGDGTL-------RL--WD---VRSPGKFM-SIEAHNS----------EILCCD 197 (311)
T ss_pred EeecCCccEEEEEecCCCCCCeEEEccCCceE-------EE--EE---ecCCCcee-EEEeccc----------eeEeec
Confidence 33 456776433 333 6999988 88 77 24557777 5999997 677777
Q ss_pred ee-cCCCeEEEEecCceEEEEecccceEE-EEEeeccccccccceeEeecCCce-EEEEecCCCeEEeeecC
Q 000378 164 CH-PRLPVLYVAYADGLIRAYNIHTYAVH-YTLQLDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 164 ~~-P~~~vL~~a~~dg~IR~w~i~t~~v~-~tL~~~~~~~~~g~~a~Af~P~g~-~l~~G~~dgtl~~W~vs 232 (1605)
++ -|.-+||+|+.|++||.|||.+..+. +-|-+ |--.|+.++|||.-. .|++.+-|=|.+|||..
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g----h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG----HGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecC----CceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 77 89999999999999999999998654 46777 999999999999865 56699999999999976
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=133.24 Aligned_cols=179 Identities=19% Similarity=0.283 Sum_probs=146.3
Q ss_pred CCceeEeCCCcceeee-ecC--ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCc---e
Q 000378 23 QPHEAAFHPNQALIAV-AIG--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ---S 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g--~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q---~ 96 (1605)
.+=..-||.+ |+|. +.+ +-.++.+-..++.|=-+....+|.++-++- +.|++.++++ |+.+|+.+-+ |
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhT 121 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHT 121 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehh
Confidence 4445567654 4554 434 559999988777777788899998888876 7899999998 9999998721 1
Q ss_pred ----------EEEeCCC--ccccc--cccC-ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceE
Q 000378 97 ----------FVLHSPE--KKMES--ISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN 161 (1605)
Q Consensus 97 ----------~v~~sp~--~~~~~--~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~ 161 (1605)
..|+||. +-+++ .|.+ |+| +||+ ....+.|-+++.|+. +|.+
T Consensus 122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV---------~l~d----~~nl~~v~~I~aH~~----------~lAa 178 (391)
T KOG2110|consen 122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV---------VLFD----TINLQPVNTINAHKG----------PLAA 178 (391)
T ss_pred hhccCCCccceEeeccCCCCceEEecCCCCCceE---------EEEE----cccceeeeEEEecCC----------ceeE
Confidence 4555544 44887 3444 666 5699 899999988999999 9999
Q ss_pred eeeecCCCeEEEEecCce-EEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 162 LACHPRLPVLYVAYADGL-IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~dg~-IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
|||||||-.||+||+-|+ ||.++|.+|+-+|-++.-. ..+-+.+++||||++.|.+-|.-+||+++-++
T Consensus 179 lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 179 LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 999999999999999986 7999999999999998822 27778899999999999999999999999887
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=133.64 Aligned_cols=144 Identities=20% Similarity=0.236 Sum_probs=117.9
Q ss_pred ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC-ce-----------EEEeCCCc---cccccccCceeEeccCCC
Q 000378 58 IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-QS-----------FVLHSPEK---KMESISVDTEVHLALTPL 122 (1605)
Q Consensus 58 l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q~-----------~v~~sp~~---~~~~~s~d~~ih~a~t~~ 122 (1605)
-.|.+++.++|-|- -.+|+|+.|.|||++|.-.. |. +.-|.|+- -.++++.|+.|
T Consensus 40 ~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i------- 109 (362)
T KOG0294|consen 40 SAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI------- 109 (362)
T ss_pred cccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE-------
Confidence 46788899999872 39999999999999999773 22 66677776 56778999988
Q ss_pred cceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccc
Q 000378 123 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL 202 (1605)
Q Consensus 123 ~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~ 202 (1605)
.+|+ ..+-..++++.+|+. -|+.|+|||.+.+-.+-|.|+.+|.||+.+|.+-|-+.+-+.-++
T Consensus 110 --~iw~----~~~W~~~~slK~H~~----------~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 110 --IIWR----VGSWELLKSLKAHKG----------QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL 173 (362)
T ss_pred --EEEE----cCCeEEeeeeccccc----------ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCccee
Confidence 5699 999999999999999 799999999999999999999999999999999998877333222
Q ss_pred ccceeEeecCCce---------------------------------------EEEEecCCCeEEeeecC
Q 000378 203 LGAGAFAFHPTLE---------------------------------------WLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 203 ~g~~a~Af~P~g~---------------------------------------~l~~G~~dgtl~~W~vs 232 (1605)
+-|+|.|+ .|+||.+++.|++||-+
T Consensus 174 -----v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 174 -----VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred -----eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccC
Confidence 55555554 56788888888888877
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=134.76 Aligned_cols=182 Identities=15% Similarity=0.110 Sum_probs=125.8
Q ss_pred CCceeEeCCCcceeee-ec---CceEEEEeccCCceeeeccCCcceeeeeecCCCCc-eEEEEecCCc--EEeeccCCCc
Q 000378 23 QPHEAAFHPNQALIAV-AI---GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGH-AVVAILEDCT--IRSCDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~---g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~-~laa~~~D~t--I~~wd~~~~q 95 (1605)
.+.+.+|||||+.||. +. +..|.+||..||...........+...+||| ||. ++++...|+. |+.||+.+.+
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCc
Confidence 6889999999999987 43 4689999999998877766777788999999 664 4456666665 8888987743
Q ss_pred e-----------EEEeCCCccccccccC--ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEe
Q 000378 96 S-----------FVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 96 ~-----------~v~~sp~~~~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~L 162 (1605)
. +..|||||+.++..+| +.. ++++|+ ..+..+- .+.-+.. -+.+.
T Consensus 282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~-------~Iy~~d----~~g~~~~-~lt~~~~----------~~~~~ 339 (435)
T PRK05137 282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSP-------QLYVMN----ADGSNPR-RISFGGG----------RYSTP 339 (435)
T ss_pred eEEccCCCCccCceeEcCCCCEEEEEECCCCCC-------eEEEEE----CCCCCeE-EeecCCC----------cccCe
Confidence 2 6789999999985443 333 566676 3322221 2222222 35678
Q ss_pred eeecCCCeEEEEecC---ceEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCC-----eEEeeecCC
Q 000378 163 ACHPRLPVLYVAYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRG-----TLLAWDVSI 233 (1605)
Q Consensus 163 A~~P~~~vL~~a~~d---g~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dg-----tl~~W~vs~ 233 (1605)
++|||+..||..+.+ ..|.+||..++.+. .+.. ...+...+|+|||++|+ +.+..+ .|.+.|+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-----~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-----GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-----CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 899999999876543 36788888776654 3332 12467899999999987 555443 455555543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-11 Score=137.54 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=114.3
Q ss_pred cccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEecc--CCceeeec-cCCcceeeeeecCCCCc-eEEEEecC
Q 000378 9 LDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTL--TGSRIASI-DINSPVVRMAYSPTSGH-AVVAILED 83 (1605)
Q Consensus 9 ~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~--tG~~~~~l-~~~~~v~~lA~SP~~g~-~laa~~~D 83 (1605)
+.|..++.+..--..+.|+.|||+-.+|.| +.|+++++|.+. +-.++.++ .-.-|+...+|+| +|| ++++++.-
T Consensus 201 krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rr 279 (514)
T KOG2055|consen 201 KRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRR 279 (514)
T ss_pred EeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccc
Confidence 344444322222346899999999999999 999999999654 44556663 3456789999999 787 99999999
Q ss_pred CcEEeeccCCCce--------------------------------------------------------EEEeCCCcccc
Q 000378 84 CTIRSCDFDTEQS--------------------------------------------------------FVLHSPEKKME 107 (1605)
Q Consensus 84 ~tI~~wd~~~~q~--------------------------------------------------------~v~~sp~~~~~ 107 (1605)
.-.++||+.+.+. .+.||.|++++
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 9999999987322 56677777766
Q ss_pred cc-ccCceeEeccCCCcceEEeccccccceeEEee--eecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEe
Q 000378 108 SI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT--VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYN 184 (1605)
Q Consensus 108 ~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt--~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~ 184 (1605)
=+ +.+|+| |||+ ....+.+-+ -+|.-- =++++.|+++.+||+||..|+|-+||
T Consensus 360 ~~~~~~GeV---------~v~n----l~~~~~~~rf~D~G~v~-----------gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 360 LASGGTGEV---------YVWN----LRQNSCLHRFVDDGSVH-----------GTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred EEEcCCceE---------EEEe----cCCcceEEEEeecCccc-----------eeeeeecCCCceEEeccCcceEEEec
Confidence 53 455677 9999 666666654 455433 36789999999999999999999999
Q ss_pred cc
Q 000378 185 IH 186 (1605)
Q Consensus 185 i~ 186 (1605)
.+
T Consensus 416 ~~ 417 (514)
T KOG2055|consen 416 GN 417 (514)
T ss_pred cc
Confidence 44
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=132.77 Aligned_cols=203 Identities=18% Similarity=0.193 Sum_probs=138.5
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeee---------------ccCCcceee
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS---------------IDINSPVVR 66 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~---------------l~~~~~v~~ 66 (1605)
|.+.+.+++-++ +++. ..+-.+---|+++++.-+-|..+++|+..-++-+++ ..-+..+--
T Consensus 40 w~lqt~r~~~~~r~~g~---~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eq 116 (323)
T KOG0322|consen 40 WVLQTERDLPLIRLFGR---LFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQ 116 (323)
T ss_pred EEeecCccchhhhhhcc---ceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchh
Confidence 666666666666 3333 245555556787777779999999999776544433 001111111
Q ss_pred eeecCC---------------------------------------CC--ceEEEEecCCcEEeeccCCCce---------
Q 000378 67 MAYSPT---------------------------------------SG--HAVVAILEDCTIRSCDFDTEQS--------- 96 (1605)
Q Consensus 67 lA~SP~---------------------------------------~g--~~laa~~~D~tI~~wd~~~~q~--------- 96 (1605)
+++.|. .+ =+|+||=+++.+-.||+.++..
T Consensus 117 ll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k 196 (323)
T KOG0322|consen 117 LLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK 196 (323)
T ss_pred heecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccc
Confidence 222221 11 2578999999999999999611
Q ss_pred -------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEe
Q 000378 97 -------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 97 -------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~L 162 (1605)
+|-|.+.. .. +|..-. .++++|.=.|-.++-..=++++=-.+ -|.++
T Consensus 197 v~~~~ash~qpvlsldyas~~--~rGisgga~-------dkl~~~Sl~~s~gslq~~~e~~lknp----------Gv~gv 257 (323)
T KOG0322|consen 197 VESPNASHKQPVLSLDYASSC--DRGISGGAD-------DKLVMYSLNHSTGSLQIRKEITLKNP----------GVSGV 257 (323)
T ss_pred cccchhhccCcceeeeechhh--cCCcCCCcc-------ccceeeeeccccCcccccceEEecCC----------Cccce
Confidence 44444221 11 122222 25677874444343332223332333 58899
Q ss_pred eeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 163 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 163 A~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
-..||+.+||+|+|||-||+|+-+|.+++.-|.- |.+||.++|||||-+.++.+|.|+||.+|++
T Consensus 258 rIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 258 RIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEccCCcEEeecccCCcEEEEEeccCCchhhhhh----hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999988 9999999999999999999999999999986
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-11 Score=138.35 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=121.5
Q ss_pred CceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecC---CcEEeeccCCCce-----------EEEeCCCccc
Q 000378 41 GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQS-----------FVLHSPEKKM 106 (1605)
Q Consensus 41 g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D---~tI~~wd~~~~q~-----------~v~~sp~~~~ 106 (1605)
+.+|.+||...+.......+..+|.+.+||| ||..||.++.+ .+|++||+.+.+. ++.|||||+.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 3799999987666555577888999999999 88888887754 4799999988531 7889999999
Q ss_pred ccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEe-cCceEEEE
Q 000378 107 ESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAY 183 (1605)
Q Consensus 107 ~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~-~dg~IR~w 183 (1605)
++. +.|+.+ ++|+|+ ..+... ..+.+|.. .+.+.+|+||+..|+.++ .+|.+++|
T Consensus 262 La~~~~~~g~~-------~Iy~~d----~~~~~~-~~lt~~~~----------~~~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 262 LAFASSKDGVL-------NIYVMG----ANGGTP-SQLTSGAG----------NNTEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred EEEEEecCCcE-------EEEEEE----CCCCCe-EeeccCCC----------CcCCEEECCCCCEEEEEECCCCCceEE
Confidence 984 346776 777887 444433 25666655 788999999999777555 57899999
Q ss_pred ecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCee
Q 000378 184 NIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 238 (1605)
Q Consensus 184 ~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m 238 (1605)
++....-..++.. +. + .+.+|+|||++|++.+.++. ..||+.+....+
T Consensus 320 ~~~~~~~~~~~l~----~~-~-~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~ 367 (429)
T PRK01742 320 RMSASGGGASLVG----GR-G-YSAQISADGKTLVMINGDNV-VKQDLTSGSTEV 367 (429)
T ss_pred EEECCCCCeEEec----CC-C-CCccCCCCCCEEEEEcCCCE-EEEECCCCCeEE
Confidence 8754322212322 22 2 45789999999997776654 459987654433
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-11 Score=138.11 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=155.8
Q ss_pred ccccCCCCCCCCCceeEeCCC--cceeeeecCceEEEEeccCCcee----ee----ccCCcceeeeeecCCCCceEEEEe
Q 000378 12 RHVGRGDHKPLQPHEAAFHPN--QALIAVAIGTYIIEFDTLTGSRI----AS----IDINSPVVRMAYSPTSGHAVVAIL 81 (1605)
Q Consensus 12 ~~~g~~~~~~~~v~~~aF~P~--gallA~a~g~~I~l~d~~tG~~~----~~----l~~~~~v~~lA~SP~~g~~laa~~ 81 (1605)
+..||.. -=-+++|++. |.||..+.|..|-+||....... .. -+|.+.|.-++|.|..-...++.+
T Consensus 172 ~L~gH~~----eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 172 RLKGHEK----EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred EEEeecc----cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 4445554 2345788886 45666699999999999877662 11 789999999999999999999999
Q ss_pred cCCcEEeeccCC--Cce------------EEEeCCCccc-cc-cccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 82 EDCTIRSCDFDT--EQS------------FVLHSPEKKM-ES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 82 ~D~tI~~wd~~~--~q~------------~v~~sp~~~~-~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
+|+.+.+||.-+ .++ ||+|+|=+.. +| +|+|+|| +| |. .|+=.+.+-++|||
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV-------~L--wD---lRnL~~~lh~~e~H 315 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV-------AL--WD---LRNLNKPLHTFEGH 315 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE-------EE--ee---chhcccCceeccCC
Confidence 999999999984 211 9999986654 55 5889999 88 88 45555566699999
Q ss_pred CCCcccccccCCCceEeeeec-CCCeEEEEecCceEEEEecccceE--------------EEEEeeccccccccceeEee
Q 000378 146 RAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAV--------------HYTLQLDNTIKLLGAGAFAF 210 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t~~v--------------~~tL~~~~~~~~~g~~a~Af 210 (1605)
++ -|-+|-+|| ...+|||++.||.+-+||+..--- +|+=-+ |...|.-|.+
T Consensus 316 ~d----------ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG----H~~kV~DfsW 381 (422)
T KOG0264|consen 316 ED----------EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG----HTAKVSDFSW 381 (422)
T ss_pred Cc----------ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC----cccccccccC
Confidence 99 999999997 578999999999999999965322 355566 7789999999
Q ss_pred cCCceEEE-EecCCCeEEeeecC
Q 000378 211 HPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 211 ~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
+|.--|+. +-+.|++|.+||++
T Consensus 382 np~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCeEEEEecCCceEEEeecc
Confidence 99999988 88899999999998
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=146.38 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=144.7
Q ss_pred cceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-------------------
Q 000378 33 QALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT------------------- 93 (1605)
Q Consensus 33 gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~------------------- 93 (1605)
.+.+.-...+-=+++.+++=.....-.|...|++|-||| ||+.||+|++||.||+|-+..
T Consensus 239 ~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~ 317 (712)
T KOG0283|consen 239 SRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN 317 (712)
T ss_pred ceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh
Confidence 444444666666777777554444458999999999999 999999999999999998876
Q ss_pred -------------C---ce-------------------------------------EEEeCCCccccccccCceeEeccC
Q 000378 94 -------------E---QS-------------------------------------FVLHSPEKKMESISVDTEVHLALT 120 (1605)
Q Consensus 94 -------------~---q~-------------------------------------~v~~sp~~~~~~~s~d~~ih~a~t 120 (1605)
. ++ .+.+|-.+-.|..|-|.||
T Consensus 318 ~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTV----- 392 (712)
T KOG0283|consen 318 ANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTV----- 392 (712)
T ss_pred hccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccE-----
Confidence 0 00 4455667777778899999
Q ss_pred CCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeec-CCCeEEEEecCceEEEEecccceEEEEEeeccc
Q 000378 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNT 199 (1605)
Q Consensus 121 ~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~ 199 (1605)
|| |+ ...-+-+.+| -|.+ =|+|+|||| |.....|||-||-||+|+|..-+|.+--.+
T Consensus 393 --RL--Wh----~~~~~CL~~F-~Hnd----------fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--- 450 (712)
T KOG0283|consen 393 --RL--WH----PGRKECLKVF-SHND----------FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--- 450 (712)
T ss_pred --Ee--ec----CCCcceeeEE-ecCC----------eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh---
Confidence 99 99 7777777555 4888 999999997 889999999999999999999999964444
Q ss_pred cccccceeEeecCCceEEEEecCCCeEEeeecCCCCCee
Q 000378 200 IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 238 (1605)
Q Consensus 200 ~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m 238 (1605)
| .-|.|+.|+|||+-.++|+-.|..++++..-.+..|
T Consensus 451 -~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 451 -R-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred -h-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 4 678999999999999999999999999988766544
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.9e-11 Score=131.59 Aligned_cols=202 Identities=19% Similarity=0.181 Sum_probs=149.7
Q ss_pred CCCCCCCCCceeEeCCC-cceeee-ecCceEEEEeccCCce-eee---------------ccCCcceeeeeecCCCCceE
Q 000378 16 RGDHKPLQPHEAAFHPN-QALIAV-AIGTYIIEFDTLTGSR-IAS---------------IDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 16 ~~~~~~~~v~~~aF~P~-gallA~-a~g~~I~l~d~~tG~~-~~~---------------l~~~~~v~~lA~SP~~g~~l 77 (1605)
||+ .|+++.--|. |+++.+ +.|.-|.+||+..-.. ..+ -.|--.|.++-|=|-|-.+.
T Consensus 42 HgG----svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGG----SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred CCC----ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 777 8999988885 788888 8899999999875441 111 12222333444558888899
Q ss_pred EEEecCCcEEeeccCCCceEEEeCCCccccc-c-ccCceeEeccCC------CcceEEeccccccceeEEeeeecCCCCc
Q 000378 78 VAILEDCTIRSCDFDTEQSFVLHSPEKKMES-I-SVDTEVHLALTP------LQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~-~-s~d~~ih~a~t~------~~l~vw~~~~~~~s~~~vgt~eG~~~~~ 149 (1605)
.+++.|-|+|.||..|-|+.+-|.=+++.-. . |.=.+-|+=+-- +|| -. .+++..--|+.||++
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrL--CD----i~SGs~sH~LsGHr~-- 189 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL--CD----IASGSFSHTLSGHRD-- 189 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEE--Ee----ccCCcceeeeccccC--
Confidence 9999999999999999999998886666432 1 222222221100 255 55 667877789999999
Q ss_pred ccccccCCCceEeeeecCCC-eEEEEecCceEEEEecccc------------eEEEEEeeccccccccceeEeecCCceE
Q 000378 150 KIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTY------------AVHYTLQLDNTIKLLGAGAFAFHPTLEW 216 (1605)
Q Consensus 150 ~ik~d~kkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~------------~v~~tL~~~~~~~~~g~~a~Af~P~g~~ 216 (1605)
-|-++-++|+.. |||+||+||.||+|||--. .-...++ -|+-|..-+..+||+-||..
T Consensus 190 --------~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 190 --------GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred --------ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchh
Confidence 999999999887 6899999999999999643 2222233 37778889999999999999
Q ss_pred EEEecCCCeEEeeecCCCCCee
Q 000378 217 LFVGDRRGTLLAWDVSIERPSM 238 (1605)
Q Consensus 217 l~~G~~dgtl~~W~vs~~~~~m 238 (1605)
|++-+.|.++++|+.+--+-+.
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred hhhccCccceEEeecccCcccc
Confidence 9988899999999998444443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=137.46 Aligned_cols=195 Identities=20% Similarity=0.243 Sum_probs=155.4
Q ss_pred cCCCCCCCCCceeEeCCCcc-eeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeecc
Q 000378 15 GRGDHKPLQPHEAAFHPNQA-LIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~ga-llA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~ 91 (1605)
||++ .|-+++|.-+=+ +||+ |.|++|+|||+.||.--.+ ..|+..|+.|+|.|....+|++|++|+||++.|.
T Consensus 241 gHTd----avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 241 GHTD----AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cchH----HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 6777 777777765544 6777 9999999999999998888 5599999999999999999999999999999998
Q ss_pred CC-Cce-----------EEEeCCCccccc--cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCC
Q 000378 92 DT-EQS-----------FVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK 157 (1605)
Q Consensus 92 ~~-~q~-----------~v~~sp~~~~~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kk 157 (1605)
.. .+. .|+..|-..-.. ...||+| + +|-.|+.++.|=|+..|-+
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v-------~-----~~D~R~~~~~vwt~~AHd~---------- 374 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTV-------Y-----YFDIRNPGKPVWTLKAHDD---------- 374 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCCceE-------E-----eeecCCCCCceeEEEeccC----------
Confidence 74 222 666666655554 3455777 2 3456778899989999999
Q ss_pred CceEeeeecCCC-eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCce-EEEEecCCCeEEeeecCCCC
Q 000378 158 PIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 158 pV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~-~l~~G~~dgtl~~W~vs~~~ 235 (1605)
+|.+|-+++.-| +|+++|.|+++++|++..-.+. ......+++.-..||++-|+-- ||+.|+.-+.+++||+.+..
T Consensus 375 ~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 375 EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CcceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 999999997666 6899999999999998766553 2223445566688999999864 67789988899999999876
Q ss_pred Ce
Q 000378 236 PS 237 (1605)
Q Consensus 236 ~~ 237 (1605)
|-
T Consensus 453 ~V 454 (463)
T KOG0270|consen 453 PV 454 (463)
T ss_pred hH
Confidence 64
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-11 Score=142.94 Aligned_cols=191 Identities=15% Similarity=0.187 Sum_probs=154.8
Q ss_pred CCcceeee-ecCceEEEEeccCCceee------e-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce------
Q 000378 31 PNQALIAV-AIGTYIIEFDTLTGSRIA------S-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------ 96 (1605)
Q Consensus 31 P~gallA~-a~g~~I~l~d~~tG~~~~------~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------ 96 (1605)
|++++|-+ +-|+.|++|+..+-+-.. + --|.+=|.-|++-= +|.+|++.+.|-|||+|+..-.-+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhh
Confidence 78886666 999999999988776632 2 56788888888887 888999999999999999876411
Q ss_pred --------EEEe-CCCccccc-cccCceeEeccCCCcceEEeccccccce--------eEEe---eeecCCCCccccccc
Q 000378 97 --------FVLH-SPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSV--------TVVG---TVEGGRAPTKIKTDL 155 (1605)
Q Consensus 97 --------~v~~-sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~--------~~vg---t~eG~~~~~~ik~d~ 155 (1605)
|++| -++....+ ++=|+.| .||. .+++ ..+. +..|+++
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~I---------flWD----in~~~~~l~~s~n~~t~~sl~sG~k~-------- 172 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKI---------FLWD----INTGTATLVASFNNVTVNSLGSGPKD-------- 172 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccE---------EEEE----ccCcchhhhhhccccccccCCCCCcc--------
Confidence 9999 67777776 5778999 4487 5543 2221 2348888
Q ss_pred CCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 156 kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
+|-+||-.|-|-.+++|+-++.||+||-.|..-.-.|++ |..-|+++--++||.-+.+||.||||++||+.--|
T Consensus 173 --siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG----HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 --SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG----HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred --ceeeeecCCcceEEEecCcccceEEeccccccceeeeec----cccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999998544
Q ss_pred C--eeeee-ccceeEEEEEE
Q 000378 236 P--SMIGM-DGSLQVWKTRV 252 (1605)
Q Consensus 236 ~--~m~g~-~g~~~~w~~rv 252 (1605)
= +.|== +| ||-.-+
T Consensus 247 Cl~T~~vH~e~---VWaL~~ 263 (735)
T KOG0308|consen 247 CLATYIVHKEG---VWALQS 263 (735)
T ss_pred eeeeEEeccCc---eEEEee
Confidence 2 22211 45 786544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-11 Score=143.47 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=138.0
Q ss_pred CCCCCceeEeCCCcceeee---ecCceEEEEeccCCce-----eeeccCCcceeeeeecCCCCceEEEEecCCcEEeecc
Q 000378 20 KPLQPHEAAFHPNQALIAV---AIGTYIIEFDTLTGSR-----IASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 20 ~~~~v~~~aF~P~gallA~---a~g~~I~l~d~~tG~~-----~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~ 91 (1605)
+-+..+|=-|+-++...|| +-|.-|-+|+...--+ ++.+..+.-|..++|.|.|-|.||++++|+.|++|-+
T Consensus 578 ~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 578 TRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred ccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 3447888899999999999 4488999999875444 3448899999999999999999999999999999988
Q ss_pred CCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeec-CCCe
Q 000378 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPV 170 (1605)
Q Consensus 92 ~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P-~~~v 170 (1605)
.++ . .+ +. +-++-+.+.+|.+ .|.+|-||| -.-|
T Consensus 658 ~a~----------g---l~---e~-------------------~~tPe~~lt~h~e----------KI~slRfHPLAadv 692 (1012)
T KOG1445|consen 658 TAN----------G---LP---EN-------------------EMTPEKILTIHGE----------KITSLRFHPLAADV 692 (1012)
T ss_pred ccC----------C---CC---cc-------------------cCCcceeeecccc----------eEEEEEecchhhhH
Confidence 332 1 01 11 1223345789999 999999997 4679
Q ss_pred EEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 171 LYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 171 L~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
|+++|-|.+||+||++|++..+.|++ |..++-.||+||||+.+++-..||||+++.-
T Consensus 693 La~asyd~Ti~lWDl~~~~~~~~l~g----HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKLYSRLVG----HTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred hhhhhccceeeeeehhhhhhhheecc----CcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 99999999999999999999999999 9999999999999999999999999998853
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-10 Score=128.29 Aligned_cols=249 Identities=21% Similarity=0.177 Sum_probs=172.6
Q ss_pred ceeEeCCCcceeee-ecCceEEEEecc-------CCceee-----e--ccCCccee-eeeec------CCCCceEEEEec
Q 000378 25 HEAAFHPNQALIAV-AIGTYIIEFDTL-------TGSRIA-----S--IDINSPVV-RMAYS------PTSGHAVVAILE 82 (1605)
Q Consensus 25 ~~~aF~P~gallA~-a~g~~I~l~d~~-------tG~~~~-----~--l~~~~~v~-~lA~S------P~~g~~laa~~~ 82 (1605)
++.-|||||--|-+ +-|....+|..- ++.... + .--+..|. ..-|| | +-...|+.+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVSSR 131 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeeccc
Confidence 45579999998888 999999998642 222111 1 22233442 23343 7 6789999999
Q ss_pred CCcEEeeccCCCce-----------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecC
Q 000378 83 DCTIRSCDFDTEQS-----------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 83 D~tI~~wd~~~~q~-----------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
|.-||+||+-|+.. |+.|||||+.|-.+--+.||+ |+ .||.--.-.|-+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirv---------Fd-t~RpGr~c~vy~t--- 198 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRV---------FD-TSRPGRDCPVYTT--- 198 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEE---------ee-ccCCCCCCcchhh---
Confidence 99999999999633 999999999996666678843 33 3332211112110
Q ss_pred CCCcccccccCCCceEeeeecCCC-eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEec-CC
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RR 223 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~d 223 (1605)
-+|=|--+|-=|.++||||-.+ .|++|+--..+-+|+=....++|+|-+ |-+||.-+-|+|||+.||+|. .|
T Consensus 199 --~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----h~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 199 --VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----HGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred --hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----cCCCeeeEEeccCcCeecccccCC
Confidence 1111445566899999998555 999999999999999999999999999 999999999999999999999 58
Q ss_pred CeEEeeecCCCC-------------Ceeeee--------------ccceeEEEEEEeeCC-CCCc---ccccccccCCcc
Q 000378 224 GTLLAWDVSIER-------------PSMIGM--------------DGSLQVWKTRVIINP-NRPP---MQANFFEPASIE 272 (1605)
Q Consensus 224 gtl~~W~vs~~~-------------~~m~g~--------------~g~~~~w~~rv~~~~-~~~~---~~a~~~~~a~~e 272 (1605)
..|+-||+--.+ ---|=| +|.|.||++.=..|+ .--+ --.|-+ .
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv-----s 347 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGV-----S 347 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccce-----e
Confidence 999999986222 112222 689999998766652 1110 011111 1
Q ss_pred ccccceeeccCCCcceecCCcccccc
Q 000378 273 SIDIPRILSQQGGEAVYPLPRVRALE 298 (1605)
Q Consensus 273 s~d~~~il~~~~g~~vyp~p~~~~~~ 298 (1605)
==-+--||+-++|--+|+-|.--+.+
T Consensus 348 lnP~mpilatssGqr~f~~~~dD~ge 373 (406)
T KOG2919|consen 348 LNPIMPILATSSGQRIFKYPKDDNGE 373 (406)
T ss_pred cCcccceeeeccCceeecCCCccccc
Confidence 11123467888999999999875544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=132.06 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=124.0
Q ss_pred CCceeEeCCCcceeee-ec---CceEEEEeccCCceeeeccCCcceeeeeecCCCCceEE-EEecCCcEEeeccC--CCc
Q 000378 23 QPHEAAFHPNQALIAV-AI---GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDCTIRSCDFD--TEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~---g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~la-a~~~D~tI~~wd~~--~~q 95 (1605)
.+.+.+|||||+.||. +. ...|.+||..+|...........+...+||| ||..|+ +.+.|+..++|..+ +..
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEEEEECCCCC
Confidence 6788999999999997 43 2469999999998776655556677899999 776555 67788886666543 321
Q ss_pred -----------eEEEeCCCccccccccC--ceeEeccCCCcceEEeccccccc--eeEEeeeecCCCCcccccccCCCce
Q 000378 96 -----------SFVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMS--VTVVGTVEGGRAPTKIKTDLKKPIV 160 (1605)
Q Consensus 96 -----------~~v~~sp~~~~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s--~~~vgt~eG~~~~~~ik~d~kkpV~ 160 (1605)
....|||||+.+...+| +.. ++|+.. ..+ ...+ +.+|+ -..
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~-------~Iy~~~----~~~g~~~~l-t~~g~------------~~~ 331 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAP-------QIYRMP----ASGGAAQRV-TFTGS------------YNT 331 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCc-------EEEEEE----CCCCceEEE-ecCCC------------CcC
Confidence 26789999998884333 343 444443 222 2223 33332 234
Q ss_pred EeeeecCCCeEEEEecCc---eEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEeeecC
Q 000378 161 NLACHPRLPVLYVAYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a~~dg---~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
+.+|||||..||..+.++ .|.+||+.+++.. .|.. + ....+.+|+|||++|+ +..++|+-.+|-++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~----~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD----T-TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC----C-CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 679999999998877665 6999999999876 4543 1 2346889999999998 55566654555443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=126.14 Aligned_cols=174 Identities=18% Similarity=0.126 Sum_probs=123.3
Q ss_pred CCceeEeCCCcceeee-ecC---ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEE-EEecCC--cEEeeccCCCc
Q 000378 23 QPHEAAFHPNQALIAV-AIG---TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDC--TIRSCDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g---~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~la-a~~~D~--tI~~wd~~~~q 95 (1605)
.+.+.+|||||+.||. +.+ ..|.+||..||.......+...+..++||| ||..|+ +...++ .|++||+.+.+
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEEECCCCC
Confidence 5677899999999998 322 589999999998777766667778899999 775554 555544 59999998753
Q ss_pred e-----------EEEeCCCccccccccC--ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEe
Q 000378 96 S-----------FVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 96 ~-----------~v~~sp~~~~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~L 162 (1605)
. ...|+|||+.+..+++ +.. ++++|+ ..+.+.. .+..+.. .+.+.
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~-------~iy~~d----~~~~~~~-~l~~~~~----------~~~~~ 327 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSP-------QIYMMD----ADGGEVR-RLTFRGG----------YNASP 327 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCCCCc-------eEEEEE----CCCCCEE-EeecCCC----------CccCe
Confidence 2 5688999998874333 333 556666 3333322 3333333 56788
Q ss_pred eeecCCCeEEEEecCc---eEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEec-CCCe
Q 000378 163 ACHPRLPVLYVAYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGT 225 (1605)
Q Consensus 163 A~~P~~~vL~~a~~dg---~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dgt 225 (1605)
++|||+..|+.++.++ .|.+||+.++... .+..+ ......+|+|||++|+..+ ++|.
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-----~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-----GLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-----CCCCCceECCCCCEEEEEEeCCCc
Confidence 9999999999998876 8889999998765 33331 1234568999999998555 4443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-10 Score=128.18 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=139.5
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCC-ceEEEEecCCcEEeeccC
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSG-HAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g-~~laa~~~D~tI~~wd~~ 92 (1605)
.|.+ .|-+++|+-||-.+++ ++|+..++||..+|....+-.|.++|..+.|=+.-. ..|+.|++|.|||.||.-
T Consensus 70 ~~~~----PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 70 SHDG----PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred ccCC----CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 3556 8999999999999988 999999999999998888899999999999987333 688999999999999987
Q ss_pred CCce-------------EEEeC-----CCccccc---cccC-ceeEeccCCCcc-eEEeccccccceeEEeeeec-----
Q 000378 93 TEQS-------------FVLHS-----PEKKMES---ISVD-TEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEG----- 144 (1605)
Q Consensus 93 ~~q~-------------~v~~s-----p~~~~~~---~s~d-~~ih~a~t~~~l-~vw~~~~~~~s~~~vgt~eG----- 144 (1605)
..++ .|+|. -.+|-|. ...+ ++.-..-+||+- .-=-+.++.+....+|-+||
T Consensus 146 ~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred CCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 6432 11111 1111111 0112 222222233320 00012233555556665555
Q ss_pred ---------------CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEe
Q 000378 145 ---------------GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFA 209 (1605)
Q Consensus 145 ---------------~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~A 209 (1605)
||..-- -.|.=-+|.++||||-...|++++.||++-+||-+..+-+-|-+- |-..+.+-+
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~-~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~----~~qpItcc~ 300 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNS-VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET----HPQPITCCS 300 (347)
T ss_pred ecCCCCccCceeEEEeccCCC-CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc----CCCccceeE
Confidence 443111 233445899999999999999999999999999999888877777 899999999
Q ss_pred ecCCceEEE
Q 000378 210 FHPTLEWLF 218 (1605)
Q Consensus 210 f~P~g~~l~ 218 (1605)
|+-+|.+.+
T Consensus 301 fn~~G~ifa 309 (347)
T KOG0647|consen 301 FNRNGSIFA 309 (347)
T ss_pred ecCCCCEEE
Confidence 999999988
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-10 Score=125.65 Aligned_cols=200 Identities=19% Similarity=0.189 Sum_probs=150.9
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-----
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----- 96 (1605)
.+..+-|+|++..|.+ +||++.++||+.+-...-.+.+.+|+-..||-+ +. .+++|+-|+.||..|+.+...
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~-~~~~G~~dg~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ES-TIVTGGLDGQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-Cc-eEEEeccCceEEEEEecCCcceeecc
Confidence 7899999998776666 999999999999886666699999999999997 44 678999999999999999532
Q ss_pred ------EEEeCC-CccccccccCceeEeccCCCcceEEecccccc-----ceeEEee--eecCC------C---------
Q 000378 97 ------FVLHSP-EKKMESISVDTEVHLALTPLQPVVFFGFHRRM-----SVTVVGT--VEGGR------A--------- 147 (1605)
Q Consensus 97 ------~v~~sp-~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~-----s~~~vgt--~eG~~------~--------- 147 (1605)
||.|++ +|..+++|=|.+| +. |.+--+.. .++-|.+ +-|++ +
T Consensus 93 h~~~i~ci~~~~~~~~vIsgsWD~~i-------k~--wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 93 HDEGIRCIEYSYEVGCVISGSWDKTI-------KF--WDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred CCCceEEEEeeccCCeEEEcccCccE-------EE--EeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcc
Confidence 999996 5778889999999 87 87321111 1222221 11111 0
Q ss_pred -----CcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccc----eEEEEEee-----ccccccccceeEeecCC
Q 000378 148 -----PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY----AVHYTLQL-----DNTIKLLGAGAFAFHPT 213 (1605)
Q Consensus 148 -----~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~----~v~~tL~~-----~~~~~~~g~~a~Af~P~ 213 (1605)
-++=-.-||-++|++||-|.+.=-+++|-||-|-.=.+.+- ...|++.- +++--.-.|.|+||||=
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 01112347889999999999999999999999844344444 45555544 33333448999999999
Q ss_pred ceEEEEecCCCeEEeeecCC
Q 000378 214 LEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 214 g~~l~~G~~dgtl~~W~vs~ 233 (1605)
-..++||+.||-+.+||.-+
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred cceEEecCCCceEEEccCcc
Confidence 99999999999999999873
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=128.49 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=151.9
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEecc------------------------------
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTL------------------------------ 50 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~------------------------------ 50 (1605)
|.+....-|-.. ||.+ .|+|+.||+++.|+++ |.|.+--+|.+.
T Consensus 175 Ws~Esg~CL~~Y~GH~G----SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~ 250 (481)
T KOG0300|consen 175 WSLESGACLATYTGHTG----SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT 250 (481)
T ss_pred Eeeccccceeeeccccc----ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence 777777667777 9999 9999999999999999 888888888622
Q ss_pred ------CCceeee-----ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-------------EEEeCCCccc
Q 000378 51 ------TGSRIAS-----IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-------------FVLHSPEKKM 106 (1605)
Q Consensus 51 ------tG~~~~~-----l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~-------------~v~~sp~~~~ 106 (1605)
.|-.|++ .+|-++|.+--|=- +|+-++.+++|-|--+||+.|... |-.|+-+.-.
T Consensus 251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLV 329 (481)
T KOG0300|consen 251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLV 329 (481)
T ss_pred ccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEE
Confidence 1112222 44555555555555 888999999999999999998532 4444444433
Q ss_pred cccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecc
Q 000378 107 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 186 (1605)
Q Consensus 107 ~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~ 186 (1605)
.-.|.|+|. || |. | |-+-.-|..|.||.+ -|++..|.-|..| +|||+|++|++||+.
T Consensus 330 vTsSrDtTF-------RL--WD-F--ReaI~sV~VFQGHtd----------tVTS~vF~~dd~v-VSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 330 VTSSRDTTF-------RL--WD-F--REAIQSVAVFQGHTD----------TVTSVVFNTDDRV-VSGSDDRTVKVWDLR 386 (481)
T ss_pred EEeccCcee-------Ee--cc-c--hhhcceeeeeccccc----------ceeEEEEecCCce-eecCCCceEEEeeec
Confidence 335889999 99 54 1 356666768999999 9999999977665 699999999999999
Q ss_pred cc-eEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 187 TY-AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 187 t~-~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
|- .++.|+..|. .+.-+|.+-.+.+|+.--+...++|+|++-
T Consensus 387 NMRsplATIRtdS-----~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 387 NMRSPLATIRTDS-----PANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred cccCcceeeecCC-----ccceeEeecCCceEEeccCCceEEEEecCC
Confidence 85 4666888854 556678888888999888888999999983
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=131.30 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=139.0
Q ss_pred CccccccccccccccCCCCCCCCCceeEeCCCcc-eeee-ecCceEEEEeccCCc------ee---ee-ccCCcceeeee
Q 000378 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQA-LIAV-AIGTYIIEFDTLTGS------RI---AS-IDINSPVVRMA 68 (1605)
Q Consensus 1 m~W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~ga-llA~-a~g~~I~l~d~~tG~------~~---~~-l~~~~~v~~lA 68 (1605)
|||-+.| ++.. -.. .|..+-||++.+ .||+ +.|..|++|-+.++. ++ ++ -.|.-.|+-+-
T Consensus 1 m~~~~~e---i~wH-~~~----pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 1 MEAYPIE---ISWH-DHE----PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR 72 (434)
T ss_pred CCceeeE---EEec-CCC----ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE
Confidence 7775444 3333 223 799999999999 9999 999999999876542 22 22 67888999999
Q ss_pred ecCCCCceEEEEecCCcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCC
Q 000378 69 YSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 69 ~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
||| +|+.||+|..++.|.+|-..+.+ +|-+-||+++ | .-.-.+.-.+.||++
T Consensus 73 f~p-~gelLASg~D~g~v~lWk~~~~~-------------------~~~~d~e~~~---~----ke~w~v~k~lr~h~~- 124 (434)
T KOG1009|consen 73 FSP-DGELLASGGDGGEVFLWKQGDVR-------------------IFDADTEADL---N----KEKWVVKKVLRGHRD- 124 (434)
T ss_pred EcC-CcCeeeecCCCceEEEEEecCcC-------------------Cccccchhhh---C----ccceEEEEEeccccc-
Confidence 999 99999999999999999886522 2222222232 0 011123336788999
Q ss_pred cccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCC
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg 224 (1605)
-|..|+.+||+..|.+|+.|.++|+||++.|.++.++-. |-.+++-+|+-|-.|.+++=+.|.
T Consensus 125 ---------diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d----h~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 125 ---------DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD----HEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ---------chhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc----cccccceeecchhhhhhhhhccCc
Confidence 999999999999999999999999999999999999999 999999999999999999877776
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=129.24 Aligned_cols=206 Identities=18% Similarity=0.242 Sum_probs=158.3
Q ss_pred cccccccccccc--cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEE
Q 000378 3 WATVQHLDLRHV--GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVV 78 (1605)
Q Consensus 3 W~~~~~~~l~~~--g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~la 78 (1605)
|.+.+..-||-+ .|+. .|-|+.||-|+-.+-+ |.|.+|++--...|+-+-- -+|+..|+..-|++ |||.|+
T Consensus 290 Wri~tG~ClRrFdrAHtk----Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~ii 364 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTK----GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHII 364 (508)
T ss_pred EEEecchHHHHhhhhhcc----CeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEE
Confidence 777777778877 5777 8999999999876666 9999999999999999888 89999999999999 999999
Q ss_pred EEecCCcEEeeccCCCceEEEeCCCccccccccCceeEe-ccCCCcceEEeccccc-------cceeEEeeeecCCCCcc
Q 000378 79 AILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHL-ALTPLQPVVFFGFHRR-------MSVTVVGTVEGGRAPTK 150 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~-a~t~~~l~vw~~~~~~-------~s~~~vgt~eG~~~~~~ 150 (1605)
+.+.|||||.|+..|..-.--|-|-++-.. - ..||+ --.|-..+|-| |. +.+.+|.++.-++-
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~--v-nsv~~~PKnpeh~iVCN---rsntv~imn~qGQvVrsfsSGkR--- 435 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYP--V-NSVILLPKNPEHFIVCN---RSNTVYIMNMQGQVVRSFSSGKR--- 435 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCccc--c-eeEEEcCCCCceEEEEc---CCCeEEEEeccceEEeeeccCCc---
Confidence 999999999999987433333555443211 1 22322 22233444555 11 34444444322211
Q ss_pred cccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 151 ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
+ +-.-.+-+.||+|.|.|...+|+..--+++.+|..--||.- |---+=.++-||.-..|++=+.||++++|-
T Consensus 436 ---E-gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V----hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 436 ---E-GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV----HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ---c-CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec----ccccccccccCcccchhhhhcccchhhhcC
Confidence 1 23456777889999999999999999999999988877776 888888899999999999999999999994
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=123.50 Aligned_cols=215 Identities=22% Similarity=0.293 Sum_probs=148.1
Q ss_pred cccc--cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCC----ceeee-ccCCcceeeeeec-CCCCceEEEEe
Q 000378 11 LRHV--GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTG----SRIAS-IDINSPVVRMAYS-PTSGHAVVAIL 81 (1605)
Q Consensus 11 l~~~--g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG----~~~~~-l~~~~~v~~lA~S-P~~g~~laa~~ 81 (1605)
.+++ ||.+ -+||+.|-+.|+.+|+ |-|++|++||...+ +..+. -.|++.|+|+.+. |-=|++||+.|
T Consensus 5 ~~pi~s~h~D----lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 5 MAPIDSGHKD----LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ccccccCCcc----eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 4555 6777 8999999999999999 99999999995322 23333 8899999999998 88899999999
Q ss_pred cCCcEEeecc--CCC-c---e---------------EEEeCCC--ccccc-cccCceeEe--ccCCCcceEEeccc----
Q 000378 82 EDCTIRSCDF--DTE-Q---S---------------FVLHSPE--KKMES-ISVDTEVHL--ALTPLQPVVFFGFH---- 131 (1605)
Q Consensus 82 ~D~tI~~wd~--~~~-q---~---------------~v~~sp~--~~~~~-~s~d~~ih~--a~t~~~l~vw~~~~---- 131 (1605)
+|.||++|-= ..+ + . .|-|.|- |-+++ .|.||++-+ |+-|+-|=-|.=.|
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 9999999975 221 1 1 6777764 55666 599988765 44442222233111
Q ss_pred -------------------cccc--eeEEe---------------eeecCCCCcccc--cccCCCceEeeeecCC----C
Q 000378 132 -------------------RRMS--VTVVG---------------TVEGGRAPTKIK--TDLKKPIVNLACHPRL----P 169 (1605)
Q Consensus 132 -------------------~~~s--~~~vg---------------t~eG~~~~~~ik--~d~kkpV~~LA~~P~~----~ 169 (1605)
.|+. --.|| -.|+|+--.||- .|++-||+.|+|.|.- .
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 1110 01111 133443222221 3777799999999864 5
Q ss_pred eEEEEecCceEEEEecccce------------------EEEEEe-eccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 170 VLYVAYADGLIRAYNIHTYA------------------VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~------------------v~~tL~-~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
+||+|+-|| ||+|+|.... ++ ++- .|+ |-.-|-.+-|.=+|.+|.+-+.||.+++|+
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~-~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE-KVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE-EeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 899999999 9999998421 11 111 111 445667788888888888888888888888
Q ss_pred cCC
Q 000378 231 VSI 233 (1605)
Q Consensus 231 vs~ 233 (1605)
..-
T Consensus 317 any 319 (361)
T KOG2445|consen 317 ANY 319 (361)
T ss_pred hhh
Confidence 773
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=128.52 Aligned_cols=185 Identities=19% Similarity=0.179 Sum_probs=136.3
Q ss_pred CCCceeEeCCCcceeeeecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC--ce-
Q 000378 22 LQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--QS- 96 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--q~- 96 (1605)
--|-|++|.+||..+-..-|.+|.+|+. .+++|+- ..|...|-+|+.-- +| +|++|..|--|-+||=+-. +.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~-~~~~~~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSK-GTNRISKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeC-CCceEEeEeeecCCceEEEEEec-Cc-cEeecCccceEEeccccccccccc
Confidence 4799999999999999977779999997 5566655 88999999999887 66 7778999999999992221 11
Q ss_pred -------------------------------------------------EEEeCCCcccccc-ccCceeEeccCCCcceE
Q 000378 97 -------------------------------------------------FVLHSPEKKMESI-SVDTEVHLALTPLQPVV 126 (1605)
Q Consensus 97 -------------------------------------------------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~v 126 (1605)
-+|-+|++..+.+ +-|+.+ ++
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v-------~l-- 394 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHV-------RL-- 394 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceE-------EE--
Confidence 1222344443332 334444 44
Q ss_pred EeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccce
Q 000378 127 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG 206 (1605)
Q Consensus 127 w~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~ 206 (1605)
|+ -||.-=.+.+ .-|+.+++|||.+ +||+|...|.--+-|++| +.+.|+.-| -..+.
T Consensus 395 W~-~~k~~wt~~~----------------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d----~~~ls 451 (626)
T KOG2106|consen 395 WN-DHKLEWTKII----------------EDPAECADFHPSG-VVAVGTATGRWFVLDTET-QDLVTIHTD----NEQLS 451 (626)
T ss_pred cc-CCceeEEEEe----------------cCceeEeeccCcc-eEEEeeccceEEEEeccc-ceeEEEEec----CCceE
Confidence 65 2222211111 2399999999999 999999999998999999 554466553 34677
Q ss_pred eEeecCCceEEEEecCCCeEEeeecCCCCC--eeeee
Q 000378 207 AFAFHPTLEWLFVGDRRGTLLAWDVSIERP--SMIGM 241 (1605)
Q Consensus 207 a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~--~m~g~ 241 (1605)
+++|+|+|..|++|++|+.|.++.||.+.- +..|+
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 999999999999999999999999996543 34455
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-10 Score=127.88 Aligned_cols=173 Identities=15% Similarity=0.168 Sum_probs=137.0
Q ss_pred CCceeEeCCCcceeeeecCceEEEEec-cCCceeee---ccC-----CcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDT-LTGSRIAS---IDI-----NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~-~tG~~~~~---l~~-----~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
+-||++|+|||-.|.++..+.|++||. ++|+.-+. ... ..-+.-+||||.+..++|.|++..++-+..-+.
T Consensus 160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 669999999999999999999999999 89998877 333 445678999999999999999999988877666
Q ss_pred Cce------------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc
Q 000378 94 EQS------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI 159 (1605)
Q Consensus 94 ~q~------------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV 159 (1605)
..+ ++-|.+||..+=. ..|..| .+|. -|.++..|=-+++|..-|.
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI---------l~WD---iR~~~~pv~~L~rhv~~TN--------- 298 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI---------LCWD---IRYSRDPVYALERHVGDTN--------- 298 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccccCCCeE---------EEEe---ehhccchhhhhhhhccCcc---------
Confidence 533 6666777776542 223344 6788 5678888877999988442
Q ss_pred eEeeee--cCCCeEEEEecCceEEEEeccc-ce-EEEEEeeccccccccceeEeecCCceEEEEec
Q 000378 160 VNLACH--PRLPVLYVAYADGLIRAYNIHT-YA-VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 160 ~~LA~~--P~~~vL~~a~~dg~IR~w~i~t-~~-v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~ 221 (1605)
.-+-|- |++.+|++|+.||.||.||.++ |. |+ -+.. |..-+..|++||-..+++|.+
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s-v~~~----~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS-VTGN----YSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCCCccc-cccc----ccccccceecCcccceeeecc
Confidence 122333 8999999999999999999999 55 34 4555 788899999999999999655
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-09 Score=131.61 Aligned_cols=227 Identities=15% Similarity=0.192 Sum_probs=160.2
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccC-CcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDI-NSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~-~~~v~~lA~SP~~g~~laa 79 (1605)
|.++..+.|-+. +... ++-|+-=+|=--.+|+ -.+++|.+|+..+|++|-+..+ ++.|.+++|.-++--++|+
T Consensus 187 ~Nvrt~K~v~~f~~~~s----~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las 262 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFS----RITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLAS 262 (910)
T ss_pred EEeccCcEEEEeccccc----ceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEe
Confidence 888888888888 5555 8999998998888999 6678999999999999999777 5999999999833378899
Q ss_pred EecCCcEEeeccCCCce-----------------------------------------------------------EEEe
Q 000378 80 ILEDCTIRSCDFDTEQS-----------------------------------------------------------FVLH 100 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~-----------------------------------------------------------~v~~ 100 (1605)
++-.|.+-+||++..+. |+.|
T Consensus 263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 99999999999988522 1221
Q ss_pred C-CCccccc-cccCc----------------------------------------------------------eeEeccC
Q 000378 101 S-PEKKMES-ISVDT----------------------------------------------------------EVHLALT 120 (1605)
Q Consensus 101 s-p~~~~~~-~s~d~----------------------------------------------------------~ih~a~t 120 (1605)
- ..|..+- ++.|+ ++|..-+
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 1 1111111 22222 2333333
Q ss_pred CCcceEEe------ccccccce--------------------eEEeeeecCCCC----ccc-------ccccCCCceEee
Q 000378 121 PLQPVVFF------GFHRRMSV--------------------TVVGTVEGGRAP----TKI-------KTDLKKPIVNLA 163 (1605)
Q Consensus 121 ~~~l~vw~------~~~~~~s~--------------------~~vgt~eG~~~~----~~i-------k~d~kkpV~~LA 163 (1605)
-++- |+ |.|....- -++|.=.|+=+- ..| -.++|+||++||
T Consensus 423 ~~~t--W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 423 SAYT--WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred eEEE--EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 3333 43 22221111 222222222110 011 137999999999
Q ss_pred eecCCCeEEEEecCceEEEEecccceEEEEEeecccc-------------------------------------ccccce
Q 000378 164 CHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTI-------------------------------------KLLGAG 206 (1605)
Q Consensus 164 ~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~-------------------------------------~~~g~~ 206 (1605)
+--..+.+++++.||++++||..+.+.+-+|.++-.| |.+-+.
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit 580 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT 580 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee
Confidence 9999999999999999999999999866666554332 222456
Q ss_pred eEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 207 AFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 207 a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
++.|||||+||++.+-|+||+.||+.+..
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 99999999999999999999999997643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=125.83 Aligned_cols=184 Identities=16% Similarity=0.103 Sum_probs=126.4
Q ss_pred EeCCCcceeeeecC-----ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecC---CcEEeeccCCCce---
Q 000378 28 AFHPNQALIAVAIG-----TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQS--- 96 (1605)
Q Consensus 28 aF~P~gallA~a~g-----~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D---~tI~~wd~~~~q~--- 96 (1605)
.|+..-+++....+ .+|.+||..++.....+.+...+.+.+||| ||..|+..+.+ ..|++||+.+.+.
T Consensus 165 ~f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l 243 (433)
T PRK04922 165 AFWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELV 243 (433)
T ss_pred cccceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEe
Confidence 45555555555322 479999987666666678888999999999 88888877743 4799999988532
Q ss_pred --------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeec
Q 000378 97 --------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 97 --------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P 166 (1605)
+..|||||+.++. +.++.. ++++|+ ..++... .+..|.. ...+.+|||
T Consensus 244 ~~~~g~~~~~~~SpDG~~l~~~~s~~g~~-------~Iy~~d----~~~g~~~-~lt~~~~----------~~~~~~~sp 301 (433)
T PRK04922 244 ASFRGINGAPSFSPDGRRLALTLSRDGNP-------EIYVMD----LGSRQLT-RLTNHFG----------IDTEPTWAP 301 (433)
T ss_pred ccCCCCccCceECCCCCEEEEEEeCCCCc-------eEEEEE----CCCCCeE-ECccCCC----------CccceEECC
Confidence 5789999998873 445543 567788 5444432 3444443 456789999
Q ss_pred CCCeEEEEec-Cce--EEEEecccceEEEEEeeccccccccceeEeecCCceEEEEec-CCC--eEEeeecCCCCCeee
Q 000378 167 RLPVLYVAYA-DGL--IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRG--TLLAWDVSIERPSMI 239 (1605)
Q Consensus 167 ~~~vL~~a~~-dg~--IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dg--tl~~W~vs~~~~~m~ 239 (1605)
|+..|+..+. +|. |-.||+.++.+. .+.. +.....+.+|||||++|+..+ .++ +|.+||+.+..+..+
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~----~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF----QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL 375 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeE-Eeec----CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence 9998887774 444 555677777765 3433 223345789999999998544 333 699999876554433
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=121.73 Aligned_cols=173 Identities=21% Similarity=0.289 Sum_probs=128.5
Q ss_pred eEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC--CceEE---EeCCCccccccccCceeEe
Q 000378 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT--EQSFV---LHSPEKKMESISVDTEVHL 117 (1605)
Q Consensus 43 ~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~--~q~~v---~~sp~~~~~~~s~d~~ih~ 117 (1605)
.+.+||-...+.+..+....+|.++.+++ ..||+.+ ...|++|.|-+ ++.++ ..+|-|- |
T Consensus 76 kviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGl-----------C 140 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGL-----------C 140 (346)
T ss_pred eEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCce-----------E
Confidence 68999999999999999999999999998 5565555 57899999985 23322 2234441 2
Q ss_pred ccCC---CcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCce-EEEEecccceEEEE
Q 000378 118 ALTP---LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL-IRAYNIHTYAVHYT 193 (1605)
Q Consensus 118 a~t~---~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~-IR~w~i~t~~v~~t 193 (1605)
++.| ..+.+|=|++. -.+.++.--.-+..+++|=+-|+-+|.++|..=+|-+||+||..|| ||+||.++|+.++-
T Consensus 141 ~~~~~~~k~~LafPg~k~-GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKT-GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred eecCCCCceEEEcCCCcc-ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 2222 12344444443 3444443233333355666666669999999999999999999995 89999999999999
Q ss_pred EeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 194 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 194 L~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
|+. -..-+-+.++||||++.||+|.|+-|||+++.+..
T Consensus 220 ~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 887 12234577999999999999999999999999874
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=125.83 Aligned_cols=194 Identities=16% Similarity=0.174 Sum_probs=140.2
Q ss_pred CCCCCceeEeCCC-------cceeee-ecCceEEEEecc----------CCceee------------eccCCcceeeeee
Q 000378 20 KPLQPHEAAFHPN-------QALIAV-AIGTYIIEFDTL----------TGSRIA------------SIDINSPVVRMAY 69 (1605)
Q Consensus 20 ~~~~v~~~aF~P~-------gallA~-a~g~~I~l~d~~----------tG~~~~------------~l~~~~~v~~lA~ 69 (1605)
-|.-|=|++|+-. |-++|+ ..+..|.+||.. =|++.+ .-+|...|-+|++
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 3455667777655 669999 899999999964 121111 1358888999999
Q ss_pred cCCCCceEEEEecCCcEEeeccCCCce------------EEEeCCCcccc--ccccCceeEeccCCCcceEEeccccccc
Q 000378 70 SPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKME--SISVDTEVHLALTPLQPVVFFGFHRRMS 135 (1605)
Q Consensus 70 SP~~g~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~--~~s~d~~ih~a~t~~~l~vw~~~~~~~s 135 (1605)
+---.|+||+|+.|.||++||+++.++ ++.++|---+. .+|-|++| ++ ..+ |.
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V-------~l--~D~---R~- 318 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTV-------AL--KDC---RD- 318 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceE-------Ee--eec---cC-
Confidence 976679999999999999999999755 55555533322 25777777 33 320 00
Q ss_pred eeEEeeeecCCCCcccccccCCCceEeeeecCCCeE-EEEecCceEEEEecccc-eEEEEEeeccccccccceeEeecCC
Q 000378 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL-YVAYADGLIRAYNIHTY-AVHYTLQLDNTIKLLGAGAFAFHPT 213 (1605)
Q Consensus 136 ~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL-~~a~~dg~IR~w~i~t~-~v~~tL~~~~~~~~~g~~a~Af~P~ 213 (1605)
.++ ...+.|.|- -|-.++++|-.+.- +++..||++|=+|+-+- .+++|++. |..+|+++.+.+.
T Consensus 319 -------~~~-s~~~wk~~g--~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A----Hd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 319 -------PSN-SGKEWKFDG--EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA----HDDEISGLSVNIQ 384 (463)
T ss_pred -------ccc-cCceEEecc--ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe----ccCCcceEEecCC
Confidence 011 112223222 46788999877765 45668999999999775 99999999 9999999999876
Q ss_pred ceE-EEEecCCCeEEeeecCCCCCeeee
Q 000378 214 LEW-LFVGDRRGTLLAWDVSIERPSMIG 240 (1605)
Q Consensus 214 g~~-l~~G~~dgtl~~W~vs~~~~~m~g 240 (1605)
--- |++++.|+++++|.++-..|.|.+
T Consensus 385 ~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 385 TPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred CCcceeeccccceEEEEeecCCCCcccc
Confidence 654 559999999999999988886654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-10 Score=136.44 Aligned_cols=181 Identities=14% Similarity=0.255 Sum_probs=145.4
Q ss_pred ccccc---ccccccc-cCCCCCCCCCceeEeCCCcceeee--ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCc
Q 000378 3 WATVQ---HLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGH 75 (1605)
Q Consensus 3 W~~~~---~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~ 75 (1605)
|++.- .+.|..+ -|.- .+|++.||+.-..+.. |=|++||.||.+.-+-+++ -..+..|.-++|||..+.
T Consensus 115 Wdlnk~~rnk~l~~f~EH~R----s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 115 WDLNKSIRNKLLTVFNEHER----SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred EecCccccchhhhHhhhhcc----ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc
Confidence 55554 3445555 5666 8999999999887666 8899999999987666666 778889999999999999
Q ss_pred eEEEEecCCcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccccccc
Q 000378 76 AVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL 155 (1605)
Q Consensus 76 ~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~ 155 (1605)
..+++.+.|.+.+||+-. - +. |+ + -+..|..
T Consensus 191 ~F~s~~dsG~lqlWDlRq---------------------p-------~r--~~-------~----k~~AH~G-------- 221 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQ---------------------P-------DR--CE-------K----KLTAHNG-------- 221 (839)
T ss_pred eEEEecCCceEEEeeccC---------------------c-------hh--HH-------H----HhhcccC--------
Confidence 999999999999999910 0 11 22 1 3568999
Q ss_pred CCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceE-EEEec--CCCeEEeeecC
Q 000378 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW-LFVGD--RRGTLLAWDVS 232 (1605)
Q Consensus 156 kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~-l~~G~--~dgtl~~W~vs 232 (1605)
||-+|-+||++.+||+|+-|+.||+||+.+....-.+.+++ -..|+.++|+|+-.. |++.+ .|-.|.+|||-
T Consensus 222 --pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 222 --PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred --ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee---cceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 99999999999999999999999999999887765555521 247899999999875 44555 78899999985
Q ss_pred ----------CCCCeeeee
Q 000378 233 ----------IERPSMIGM 241 (1605)
Q Consensus 233 ----------~~~~~m~g~ 241 (1605)
+.|++.-||
T Consensus 297 RPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 297 RPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred cccccceeeeccCccccce
Confidence 567888888
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=130.33 Aligned_cols=198 Identities=17% Similarity=0.206 Sum_probs=162.6
Q ss_pred Cccccccccccccc-cCCCCCCCCCceeEeCCCcceeeee-cCceEEEEeccCCceeee---ccCCcceeeeeecCCCCc
Q 000378 1 MEWATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVA-IGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGH 75 (1605)
Q Consensus 1 m~W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a-~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~ 75 (1605)
|||++-+-+.+.-. --|+ .+-++|-+|.+..|+++ .|+.+..|+.-+|..+.. ..-.+.|-+++|+| +|+
T Consensus 93 ~EwDl~~lk~~~~~d~~gg----~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~ 167 (691)
T KOG2048|consen 93 TEWDLHTLKQKYNIDSNGG----AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGT 167 (691)
T ss_pred EEEecccCceeEEecCCCc----ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-Ccc
Confidence 69998885555555 4566 89999999999999995 677899999999988876 45558999999999 888
Q ss_pred eEEEEecCCcEEeeccCCCce--------------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccc
Q 000378 76 AVVAILEDCTIRSCDFDTEQS--------------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMS 135 (1605)
Q Consensus 76 ~laa~~~D~tI~~wd~~~~q~--------------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s 135 (1605)
.||.||.||.||.||....++ +|+|--|+.++++-+-|+| +- |+ ...
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V-------~F--Wd----~~~ 234 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTV-------TF--WD----SIF 234 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceE-------EE--Ec----ccC
Confidence 899999999999999988644 7888899998766555788 66 99 555
Q ss_pred eeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCce
Q 000378 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE 215 (1605)
Q Consensus 136 ~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~ 215 (1605)
++.++-+.- |++-|-+||-.++.-.|++|+.|+.|--|-..+..--|--...-..|.-.++++|..++
T Consensus 235 gTLiqS~~~----------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 235 GTLIQSHSC----------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred cchhhhhhh----------hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence 555544444 44599999999999999999999999888888876545444455679999999999999
Q ss_pred EEEEecCCCeEEe
Q 000378 216 WLFVGDRRGTLLA 228 (1605)
Q Consensus 216 ~l~~G~~dgtl~~ 228 (1605)
.|++|++|++|-+
T Consensus 303 ~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 303 ALISGGRDFTLAI 315 (691)
T ss_pred eEEecceeeEEEE
Confidence 8999999999875
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=129.80 Aligned_cols=232 Identities=19% Similarity=0.286 Sum_probs=159.1
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCC-ceEEEEecCCcEEeeccC
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSG-HAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g-~~laa~~~D~tI~~wd~~ 92 (1605)
||.+ .|.|++-+|.|.+||+ +.|+++++|.++||+.+...-...-|.++||+|-.. -+||+.-.++ +-+.|-.
T Consensus 398 GHtg----~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 398 GHTG----LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred ccCC----eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence 8999 9999999999999999 999999999999999999988888999999998433 5566666666 6666654
Q ss_pred CC------ce-EEEeC------CCccccccccC----ce--eEe---ccCCCcceEEeccccccceeEEeeeecCCCCcc
Q 000378 93 TE------QS-FVLHS------PEKKMESISVD----TE--VHL---ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1605)
Q Consensus 93 ~~------q~-~v~~s------p~~~~~~~s~d----~~--ih~---a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ 150 (1605)
-+ ++ -.+++ |++....=+.+ .+ ||+ +..+++-+-|+ +.-.... ||-+-...+.
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH----rkGDYla-tV~~~~~~~~ 547 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH----RKGDYLA-TVMPDSGNKS 547 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee----cCCceEE-EeccCCCcce
Confidence 43 12 11111 22211111111 22 333 34457888898 5544433 5444222111
Q ss_pred --------ccc-----ccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEE
Q 000378 151 --------IKT-----DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWL 217 (1605)
Q Consensus 151 --------ik~-----d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l 217 (1605)
=|+ --|--|..+.|||-.|.|+||+ -+.||+||+....+.=+|.- -+-=+.+++.||.|+.|
T Consensus 548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t----g~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT----GSKWISSMSIHPNGDNL 622 (733)
T ss_pred EEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc----CCeeeeeeeecCCCCeE
Confidence 111 1123578999999999999999 88999999988655433333 22245789999999999
Q ss_pred EEecCCCeEEeeecCCC-CC---ee-------------------eee-ccceeEEEEEEeeCCCCCcc
Q 000378 218 FVGDRRGTLLAWDVSIE-RP---SM-------------------IGM-DGSLQVWKTRVIINPNRPPM 261 (1605)
Q Consensus 218 ~~G~~dgtl~~W~vs~~-~~---~m-------------------~g~-~g~~~~w~~rv~~~~~~~~~ 261 (1605)
++|+-|++++-.|++-+ +| .| .|- ||++.|.--||.-+=+.-||
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 99999999999999944 22 11 112 58999999888766554443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=114.59 Aligned_cols=188 Identities=19% Similarity=0.193 Sum_probs=130.3
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEe------ccCCceeee----------ccCCcceeeeeecCCCCceEEEEecCCc
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFD------TLTGSRIAS----------IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d------~~tG~~~~~----------l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
.|++++|||.|.+.|| |-.++.+++. ...+-+... .-|-.++.-.|||| +|+.||.|+.|.+
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgsndk~ 112 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGSNDKT 112 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecCCCce
Confidence 8999999999999999 6677777653 222222111 34667788899999 9999999999999
Q ss_pred EEeeccCCCce-----EEEeC--------------CC--ccccccccC-ceeEeccCCCcceEEeccccccceeEEeeee
Q 000378 86 IRSCDFDTEQS-----FVLHS--------------PE--KKMESISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 86 I~~wd~~~~q~-----~v~~s--------------p~--~~~~~~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
||.--|+.+.- -+.|+ |+ |++++ |.+ +.- +..+=. -..++....+.
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~-s~gagdc-------~iy~td----c~~g~~~~a~s 180 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA-SAGAGDC-------KIYITD----CGRGQGFHALS 180 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE-ecCCCcc-------eEEEee----cCCCCcceeec
Confidence 99987766421 12222 22 12221 211 111 111111 12334444577
Q ss_pred cCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccccc-----ceeEeecCCceEEE
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG-----AGAFAFHPTLEWLF 218 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g-----~~a~Af~P~g~~l~ 218 (1605)
||+. -|-+| ++=.+-..+|||-|.+||+||+.--. +--.+||+.|..| |.|+|--|+|+.|+
T Consensus 181 ghtg----------hilal-yswn~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 181 GHTG----------HILAL-YSWNGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred CCcc----------cEEEE-EEecCcEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 8887 55544 34678889999999999999986433 3345688888887 77999999999999
Q ss_pred EecCCCeEEeeecCCCCC
Q 000378 219 VGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 219 ~G~~dgtl~~W~vs~~~~ 236 (1605)
+|-.|..--++|+--.||
T Consensus 248 sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRM 265 (350)
T ss_pred eccCCCceEEEEeeCCce
Confidence 999999999999987775
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=128.91 Aligned_cols=187 Identities=15% Similarity=0.150 Sum_probs=144.4
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEecc-------CCc--eeee-ccCCcceeeeeec
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTL-------TGS--RIAS-IDINSPVVRMAYS 70 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~-------tG~--~~~~-l~~~~~v~~lA~S 70 (1605)
|.+.+...|..+ .|=. .+-|+-|+-||.+|.+ |=|+.|.+|+.- ++. -+.. -+|.-+|+.|--.
T Consensus 108 WelssG~LL~v~~aHYQ----~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig 183 (476)
T KOG0646|consen 108 WELSSGILLNVLSAHYQ----SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIG 183 (476)
T ss_pred EEeccccHHHHHHhhcc----ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEec
Confidence 888888888888 7877 8999999999999999 999999999853 121 1222 5788888888777
Q ss_pred CCCC--ceEEEEecCCcEEeeccCCCce-----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccc--cc-
Q 000378 71 PTSG--HAVVAILEDCTIRSCDFDTEQS-----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFH--RR- 133 (1605)
Q Consensus 71 P~~g--~~laa~~~D~tI~~wd~~~~q~-----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~--~~- 133 (1605)
+ +| ..|.+.++|-|||+||+..... +++-+|..+-.= +++||-| -...+|+.. ++
T Consensus 184 ~-Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I-------~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 184 S-GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKI-------FQNLLFKLSGQSAG 255 (476)
T ss_pred C-CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceE-------EeeehhcCCccccc
Confidence 6 43 6899999999999999988633 888889888766 5778888 222233222 11
Q ss_pred -------cceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccce
Q 000378 134 -------MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG 206 (1605)
Q Consensus 134 -------~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~ 206 (1605)
-..+.+-.+-||++ .|+|+|||.+=||-+|+||+.||.+++||+.+-+.+=||+- --+.|.
T Consensus 256 v~~k~~~~~~t~~~~~~Gh~~--------~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~----~kgpVt 323 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVLVGHEN--------ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT----SKGPVT 323 (476)
T ss_pred ccccccccccceeeeeccccC--------CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh----hccccc
Confidence 23445545889988 48999999999999999999999999999999998877763 234566
Q ss_pred eEeecCC
Q 000378 207 AFAFHPT 213 (1605)
Q Consensus 207 a~Af~P~ 213 (1605)
-+.+.|=
T Consensus 324 nL~i~~~ 330 (476)
T KOG0646|consen 324 NLQINPL 330 (476)
T ss_pred eeEeecc
Confidence 6666554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=123.06 Aligned_cols=163 Identities=12% Similarity=0.038 Sum_probs=118.3
Q ss_pred ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEec---CCcEEeeccCCCce-----------EEEeCCCcccc
Q 000378 42 TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE---DCTIRSCDFDTEQS-----------FVLHSPEKKME 107 (1605)
Q Consensus 42 ~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~---D~tI~~wd~~~~q~-----------~v~~sp~~~~~ 107 (1605)
..|.++|..++.......+..+|.+.+||| ||..|+-.+. +..|++||+.+++. +..|||||+.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 489999987666666688888999999999 8888888764 47899999988532 56789999988
Q ss_pred cc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEec-Cc--eEEE
Q 000378 108 SI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRA 182 (1605)
Q Consensus 108 ~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~-dg--~IR~ 182 (1605)
+. +.|+.. ++|+|+ ..+.... .+..|.. .+++.+|+||+..|+..+. +| .|.+
T Consensus 261 a~~~~~~g~~-------~Iy~~d----~~~~~~~-~Lt~~~~----------~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 261 VMSLSQGGNT-------DIYTMD----LRSGTTT-RLTDSPA----------IDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred EEEEecCCCc-------eEEEEE----CCCCceE-EccCCCC----------ccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 73 444544 567787 4443332 3444443 5678899999998887774 33 6778
Q ss_pred EecccceEEEEEeeccccccccceeEeecCCceEEEEec-CCC--eEEeeecC
Q 000378 183 YNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRG--TLLAWDVS 232 (1605)
Q Consensus 183 w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dg--tl~~W~vs 232 (1605)
||+.++.+. .|.. +.......+|+|||++|+..+ .++ +|.+||+.
T Consensus 319 ~d~~g~~~~-~lt~----~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 319 MNADGSNPR-RISF----GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred EECCCCCeE-Eeec----CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 898888776 5544 334466789999999998544 333 57777764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.4e-10 Score=130.02 Aligned_cols=180 Identities=15% Similarity=0.177 Sum_probs=152.1
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcc-eeeeeecCCCCceEEEEecCCcEEeeccCCCce--
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSP-VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~-v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~-- 96 (1605)
-+++.-.+|||+.|.+ +...++.+||..+-...-- +.-.++ +.+||-|| |..++-+.|.||.|+.||+.++..
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeee
Confidence 6778899999999999 8899999999886554433 333334 48999999 999999999999999999988522
Q ss_pred ----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 97 ----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 97 ----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
|+--|+||..+= ++-|.+| |- |+ ..++..+ .+-|.+.-|-+|-+.
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntv-------Rc--WD----lregrql-----------qqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTV-------RC--WD----LREGRQL-----------QQHDFSSQIFSLGYC 601 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccce-------ee--hh----hhhhhhh-----------hhhhhhhhheecccC
Confidence 999999999887 5888999 88 88 4444443 466888899999999
Q ss_pred cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
|.+-||++|-+.+.+.+-+. ++-..|-|.+ |-.=|=++-|.+-|+|.++-+.|.-|-+|..+
T Consensus 602 P~~dWlavGMens~vevlh~-skp~kyqlhl----heScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 602 PTGDWLAVGMENSNVEVLHT-SKPEKYQLHL----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred CCccceeeecccCcEEEEec-CCccceeecc----cccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 99999999999999977664 5667788888 99999999999999999998999999999876
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.3e-10 Score=123.60 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=140.5
Q ss_pred CCceeEeCCCcce--eeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-Cce--
Q 000378 23 QPHEAAFHPNQAL--IAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT-EQS-- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gal--lA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~-~q~-- 96 (1605)
-|-++-+.+.-+. |-+|||++|||||...+.-+.+ .+|..-|...+|||-.++.+++.+-|++.|+||+.. +++
T Consensus 106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 5677777775443 3349999999999999998888 999999999999999999999999999999999876 333
Q ss_pred EEEeC----------CCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 97 FVLHS----------PEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 97 ~v~~s----------p~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
.-+|+ -+-.+++ ++.|+.| |- |. -|+-+++|-.+.||.= .||.++||
T Consensus 186 i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v-------r~--wD---ir~~r~pl~eL~gh~~----------AVRkvk~S 243 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKYNHNVLATGGVDNLV-------RG--WD---IRNLRTPLFELNGHGL----------AVRKVKFS 243 (311)
T ss_pred EEeccceeEeecccccCCcEEEecCCCceE-------EE--Ee---hhhccccceeecCCce----------EEEEEecC
Confidence 22333 3445666 4888888 76 87 3555677767899999 99999999
Q ss_pred c-CCCeEEEEecCceEEEEecccceEE-EEEeeccccccccceeEeecC-CceEEEEecCCCeEEeee
Q 000378 166 P-RLPVLYVAYADGLIRAYNIHTYAVH-YTLQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 166 P-~~~vL~~a~~dg~IR~w~i~t~~v~-~tL~~~~~~~~~g~~a~Af~P-~g~~l~~G~~dgtl~~W~ 230 (1605)
| ..-+|||+|-|.++|+||.....-. -|... |.-=|.-+-+++ +.-+++.-+=|++|.+|+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~----HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDH----HTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhc----cceEEeccccccccCceeeecccccceeeec
Confidence 7 5679999999999999998632211 13333 665555555655 455788888999999997
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-09 Score=122.96 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=118.2
Q ss_pred ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEec---CCcEEeeccCCCce-----------EEEeCCCcccc
Q 000378 42 TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE---DCTIRSCDFDTEQS-----------FVLHSPEKKME 107 (1605)
Q Consensus 42 ~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~---D~tI~~wd~~~~q~-----------~v~~sp~~~~~ 107 (1605)
..|.+||...+.....+....++.+.+||| ||..||..+. +..|++||+.+++. .+.|||||+.+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 379999987666666677777999999999 8888876553 45799999988532 57899999999
Q ss_pred cc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecC-ceEEEE-
Q 000378 108 SI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-GLIRAY- 183 (1605)
Q Consensus 108 ~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~d-g~IR~w- 183 (1605)
+. +.++.. ++|+|+ ..+++.. .+..+.. .+.+.+||||+..|+..+.+ |..++|
T Consensus 258 a~~~~~~g~~-------~I~~~d----~~tg~~~-~lt~~~~----------~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 258 AFALSKTGSL-------NLYVMD----LASGQIR-QVTDGRS----------NNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred EEEEcCCCCc-------EEEEEE----CCCCCEE-EccCCCC----------CcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 84 334544 567788 5544433 2322223 67899999999988777654 555666
Q ss_pred -ecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCC--eEEeeecCCCCCe
Q 000378 184 -NIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRG--TLLAWDVSIERPS 237 (1605)
Q Consensus 184 -~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dg--tl~~W~vs~~~~~ 237 (1605)
|+.++.+. .|.. +.....+++|||||++|+ ++..++ .|.+||+.+....
T Consensus 316 ~d~~~g~~~-~lt~----~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 316 VNINGGAPQ-RITW----EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred EECCCCCeE-Eeec----CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 67777765 4543 334566899999999998 444443 5777887755443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=126.16 Aligned_cols=186 Identities=17% Similarity=0.189 Sum_probs=142.2
Q ss_pred cCCCCCCCCCceeEeCCCc-ceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeecc
Q 000378 15 GRGDHKPLQPHEAAFHPNQ-ALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~g-allA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~ 91 (1605)
||.+ .|+|+|=||++ ..+|+ |+|+.|++||..+-+.+.+ -.|-.+|.-|++.- ..++..+.|.|||.|-.
T Consensus 64 gHrd----GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 64 GHRD----GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cccc----ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeec
Confidence 8999 99999999999 99999 9999999999887776776 88889999999987 67789999999999987
Q ss_pred CCCceEEEeCCCcccc--cc----------ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc
Q 000378 92 DTEQSFVLHSPEKKME--SI----------SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI 159 (1605)
Q Consensus 92 ~~~q~~v~~sp~~~~~--~~----------s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV 159 (1605)
+-. .+|+=.|+.. .+ +.+-.| =+|. ..--++|..++=+.+ .|
T Consensus 137 ~~~---p~~tilg~s~~~gIdh~~~~~~FaTcGe~i---------~IWD----~~R~~Pv~smswG~D----------ti 190 (433)
T KOG0268|consen 137 DGP---PLHTILGKSVYLGIDHHRKNSVFATCGEQI---------DIWD----EQRDNPVSSMSWGAD----------SI 190 (433)
T ss_pred cCC---cceeeeccccccccccccccccccccCcee---------eecc----cccCCccceeecCCC----------ce
Confidence 652 2222111111 11 111122 1377 666667777777777 88
Q ss_pred eEeeeecCCC-eEEEEecCceEEEEecccceEEEEEeecc---cc-----------------------------------
Q 000378 160 VNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDN---TI----------------------------------- 200 (1605)
Q Consensus 160 ~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~---~~----------------------------------- 200 (1605)
.++-|.|=-. +|+++..|+.|-+||.-+++++=.+.+++ +|
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d 270 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD 270 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc
Confidence 8999997654 68888789999999999998875444421 11
Q ss_pred ccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 201 KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 201 ~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
|-..|-.++|||||+=+++||=|.||+|+.+..
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 333566899999999999999999999999973
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=119.20 Aligned_cols=179 Identities=16% Similarity=0.078 Sum_probs=121.3
Q ss_pred CCceeEeCCCcceeee-ecC---ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEE-EEecCC--cEEeeccCCCc
Q 000378 23 QPHEAAFHPNQALIAV-AIG---TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDC--TIRSCDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g---~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~la-a~~~D~--tI~~wd~~~~q 95 (1605)
.+...+|||||+.||. +.+ ..|.+||..||...........+...+||| ||..|+ +...++ .|++||+++.+
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCceEEEEECCCCC
Confidence 5788899999999987 433 479999999998777655555667899999 776665 455555 69999998853
Q ss_pred e-----------EEEeCCCccccccccC--ceeEeccCCCcceEEeccccccceeEEe-eeecCCCCcccccccCCCceE
Q 000378 96 S-----------FVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMSVTVVG-TVEGGRAPTKIKTDLKKPIVN 161 (1605)
Q Consensus 96 ~-----------~v~~sp~~~~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s~~~vg-t~eG~~~~~~ik~d~kkpV~~ 161 (1605)
. ...|||||+.+..+++ +.. ++++|+ ..++..-. +..|+ -...
T Consensus 279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~-------~iy~~d----~~~g~~~~lt~~~~------------~~~~ 335 (430)
T PRK00178 279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKP-------QIYKVN----VNGGRAERVTFVGN------------YNAR 335 (430)
T ss_pred eEEcccCCCCcCCeEECCCCCEEEEEECCCCCc-------eEEEEE----CCCCCEEEeecCCC------------Cccc
Confidence 2 5678999998875444 333 455555 33332211 33332 2245
Q ss_pred eeeecCCCeEEEEecC-c--eEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEeeec
Q 000378 162 LACHPRLPVLYVAYAD-G--LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDV 231 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~d-g--~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~v 231 (1605)
.+++||+..|+..+.+ + .|.+||+.++... .|... .......|||||++|+ +..++|+-.+|-+
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-----~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-----SLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-----CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 7899999999877643 3 5788999999876 44431 1223568999999998 4545555444433
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.7e-09 Score=121.88 Aligned_cols=186 Identities=12% Similarity=0.003 Sum_probs=123.5
Q ss_pred ceeEeCCCcceee---eec---CceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEec-----CCcEEeeccCC
Q 000378 25 HEAAFHPNQALIA---VAI---GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-----DCTIRSCDFDT 93 (1605)
Q Consensus 25 ~~~aF~P~gallA---~a~---g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~-----D~tI~~wd~~~ 93 (1605)
.+-+|||||+.++ ++. ...|.+.|..+|....+..........+||| ||..||..+. |-.+..||+++
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCcceeEEEeeccc
Confidence 4558999997533 333 3479999999998888877777777889999 8877776553 33445577653
Q ss_pred C---------------ceEEEeCCCcccccccc--CceeEeccCCCcceEEecccccc-ceeEEeeeecCCCCccccccc
Q 000378 94 E---------------QSFVLHSPEKKMESISV--DTEVHLALTPLQPVVFFGFHRRM-SVTVVGTVEGGRAPTKIKTDL 155 (1605)
Q Consensus 94 ~---------------q~~v~~sp~~~~~~~s~--d~~ih~a~t~~~l~vw~~~~~~~-s~~~vgt~eG~~~~~~ik~d~ 155 (1605)
. .....|||||+.++..+ ++.. ++|++. .. .......+ ++.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~-------~ly~~~----~~~~g~~~~~l----------t~~ 325 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRP-------RIYIMQ----IDPEGQSPRLL----------TKK 325 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCc-------eEEEEE----CcccccceEEe----------ccC
Confidence 1 11568999999888433 3444 555444 11 11111112 223
Q ss_pred CCCceEeeeecCCCeEEEEecC---ceEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCC--CeEEee
Q 000378 156 KKPIVNLACHPRLPVLYVAYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRR--GTLLAW 229 (1605)
Q Consensus 156 kkpV~~LA~~P~~~vL~~a~~d---g~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~d--gtl~~W 229 (1605)
+..+.+.++||||..|+..+.+ ..|.+||+.+++.. .|..+ ...+...+|+|||++|+ +...+ ..|.+|
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~----~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTS----PENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCC----CCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 3477889999999988766543 36899999999987 55542 23456789999999987 55443 467777
Q ss_pred ecCCCCCe
Q 000378 230 DVSIERPS 237 (1605)
Q Consensus 230 ~vs~~~~~ 237 (1605)
++......
T Consensus 401 dl~~g~~~ 408 (428)
T PRK01029 401 SLITKKTR 408 (428)
T ss_pred ECCCCCEE
Confidence 77654443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=124.80 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=133.7
Q ss_pred ceeEeCCCcceeee-ecCceEEEEe-ccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce------
Q 000378 25 HEAAFHPNQALIAV-AIGTYIIEFD-TLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------ 96 (1605)
Q Consensus 25 ~~~aF~P~gallA~-a~g~~I~l~d-~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------ 96 (1605)
-++||++||..||+ +.|.++++|| +.--..+-...|.+.|..|.||| ||.+||+++.| .-+.||.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 68999999999999 8999999999 55444445589999999999999 99999999999 999999999611
Q ss_pred --------EEEeCCCc-----ccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEe
Q 000378 97 --------FVLHSPEK-----KMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 97 --------~v~~sp~~-----~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~L 162 (1605)
..-|+-|+ +..+. ...+-| -+ .+.-+|. .. ..+ +++=|+--+|.|.+|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v--~~--~~~~~w~----~~--~~l--------~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGV--RL--CDISLWS----GS--NFL--------RLRKKIKRFKSISSL 287 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCce--eE--EEeeeec----cc--ccc--------chhhhhhccCcceeE
Confidence 23344444 21111 111222 00 0111233 11 111 223333445689999
Q ss_pred eeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 163 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 163 A~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
|-|+||.+||+|+.||.|-+|+..+-+..|-... .|+.-|.++.|+||-+.+++=+.|.+..+--++
T Consensus 288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~---aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE---AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh---hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999999999999999999999887654333 599999999999999988866666655554333
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=127.63 Aligned_cols=230 Identities=16% Similarity=0.171 Sum_probs=165.4
Q ss_pred CCceeEeCCCcceeee--ecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCc--
Q 000378 23 QPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ-- 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q-- 95 (1605)
.|--++|-| |..+.| +.|.+|+.||+.++..+-. ++|...|-++||.|++-.+++.|..|+.|.+||.--..
T Consensus 102 AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d 180 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD 180 (720)
T ss_pred eeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh
Confidence 677889999 665555 9999999999999888776 99999999999999999999999999999999974210
Q ss_pred ------------------e-------------------E---EEeCCCccccc-ccc-CceeEeccCCCcceEEeccccc
Q 000378 96 ------------------S-------------------F---VLHSPEKKMES-ISV-DTEVHLALTPLQPVVFFGFHRR 133 (1605)
Q Consensus 96 ------------------~-------------------~---v~~sp~~~~~~-~s~-d~~ih~a~t~~~l~vw~~~~~~ 133 (1605)
+ . |+|.-|.-+++ .|. |+.| |- |+ ..|.
T Consensus 181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~i-------KV--WD-LRk~ 250 (720)
T KOG0321|consen 181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTI-------KV--WD-LRKN 250 (720)
T ss_pred hHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcce-------EE--Ee-eccc
Confidence 0 3 67777777777 444 7888 55 88 3333
Q ss_pred cceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccc-cceeE----
Q 000378 134 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL-GAGAF---- 208 (1605)
Q Consensus 134 ~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~-g~~a~---- 208 (1605)
.+-..-+...-|+-||.=|+ +.-++||-.---|+.|++.--|+.|-.||+-+..+- .+.+ |.. -+..|
T Consensus 251 ~~~~r~ep~~~~~~~t~skr--s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-P~~~----~sg~~~~sf~vks 323 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKR--SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-PVAE----FSGKLNSSFYVKS 323 (720)
T ss_pred ccccccCCCcccCccCcccc--eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-chhh----ccCcccceeeeee
Confidence 33333334444555555333 345788887788899999999999999999887665 3333 211 11111
Q ss_pred eecCCceEEEEecCCCeEEeeecC-CCCCeeeeeccceeEEEEEEeeCCCCCcccccccccCCcc
Q 000378 209 AFHPTLEWLFVGDRRGTLLAWDVS-IERPSMIGMDGSLQVWKTRVIINPNRPPMQANFFEPASIE 272 (1605)
Q Consensus 209 Af~P~g~~l~~G~~dgtl~~W~vs-~~~~~m~g~~g~~~~w~~rv~~~~~~~~~~a~~~~~a~~e 272 (1605)
-.+||++.|++|+.|...++|.|+ ++-|..+=.+-+.+|--+|+...+-.|-..+ .+..++-
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc--SdD~~~k 386 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC--SDDFRVK 386 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee--ccCcceE
Confidence 239999999999999999999999 6666655554566666666666655554444 4444443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-09 Score=121.75 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=119.7
Q ss_pred EeCCCcceeeeec---CceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecC---CcEEeeccCCCce-----
Q 000378 28 AFHPNQALIAVAI---GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQS----- 96 (1605)
Q Consensus 28 aF~P~gallA~a~---g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D---~tI~~wd~~~~q~----- 96 (1605)
.|+ +++.-++- ...|.+||..+......+.....+.+.+||| ||..|+..+.+ ..|++||+.+++.
T Consensus 161 ~f~--~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~ 237 (427)
T PRK02889 161 VFS--TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVAN 237 (427)
T ss_pred ccc--cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeec
Confidence 465 44444432 3578899975444455577888999999999 88888877754 3599999988532
Q ss_pred ------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC
Q 000378 97 ------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1605)
Q Consensus 97 ------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~ 168 (1605)
+.+|||||+.++. +.|+.. ++|+++ ..+.. +..+..|.. .+.+.+|||||
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~-------~Iy~~d----~~~~~-~~~lt~~~~----------~~~~~~wSpDG 295 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNS-------QIYTVN----ADGSG-LRRLTQSSG----------IDTEPFFSPDG 295 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCc-------eEEEEE----CCCCC-cEECCCCCC----------CCcCeEEcCCC
Confidence 6789999998873 455655 666665 22221 223333333 56778999999
Q ss_pred CeEEEEec-CceEEEEec--ccceEEEEEeeccccccccceeEeecCCceEEEEecCCC---eEEeeecCCCCCee
Q 000378 169 PVLYVAYA-DGLIRAYNI--HTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSM 238 (1605)
Q Consensus 169 ~vL~~a~~-dg~IR~w~i--~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg---tl~~W~vs~~~~~m 238 (1605)
..|+..+. +|...+|.+ .++.+. .+.. +.......+|||||++|+..+.++ +|.+||+.+.....
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~----~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF----TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceE-EEec----CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 98886664 466677765 455543 2222 222344678999999999555443 69999998655443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=116.90 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=117.7
Q ss_pred ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecC---CcEEeeccCCCce-----------EEEeCCCcccc
Q 000378 42 TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQS-----------FVLHSPEKKME 107 (1605)
Q Consensus 42 ~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D---~tI~~wd~~~~q~-----------~v~~sp~~~~~ 107 (1605)
..|.++|..++.....+++...+.+.+||| ||..||.++.+ .+|++||+.+.+. +..|||||+.+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 468999986666666678888899999999 88888877755 4899999988532 67889999888
Q ss_pred cc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecC-c--eEEE
Q 000378 108 SI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-G--LIRA 182 (1605)
Q Consensus 108 ~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~d-g--~IR~ 182 (1605)
.. +.++.. ++++|+ ..+.... .+..|.. .+.+.+|+||+..|+..+.. + .|-.
T Consensus 249 ~~~~~~~~~~-------~i~~~d----~~~~~~~-~l~~~~~----------~~~~~~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 249 AVSLSKDGNP-------DIYVMD----LDGKQLT-RLTNGPG----------IDTEPSWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred EEEECCCCCc-------cEEEEE----CCCCCEE-ECCCCCC----------CCCCEEECCCCCEEEEEECCCCCceEEE
Confidence 74 334443 556676 4433322 3333333 45677999999988766643 3 5777
Q ss_pred EecccceEEEEEeeccccccccceeEeecCCceEEEEecCCC---eEEeeecCC
Q 000378 183 YNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSI 233 (1605)
Q Consensus 183 w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg---tl~~W~vs~ 233 (1605)
||+.++... .+.. +......++|+|||++|+..++++ +|.+||+.+
T Consensus 307 ~d~~~~~~~-~l~~----~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 307 MDADGGEVR-RLTF----RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EECCCCCEE-Eeec----CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 788888765 5554 445667889999999999777665 788888765
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=125.31 Aligned_cols=174 Identities=18% Similarity=0.190 Sum_probs=137.0
Q ss_pred CCCCCCCceeEeCC-----Ccceeee----ecC-ceEEEEeccCCceeee----ccCCcceeeeeecCCCCceEEEEecC
Q 000378 18 DHKPLQPHEAAFHP-----NQALIAV----AIG-TYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGHAVVAILED 83 (1605)
Q Consensus 18 ~~~~~~v~~~aF~P-----~gallA~----a~g-~~I~l~d~~tG~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D 83 (1605)
|+--.+|.-.+|-. |.++||+ |.| -.+++=-..||+.-.. -+|.++|-.++|+|.+-++||+|++|
T Consensus 24 CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD 103 (472)
T KOG0303|consen 24 CYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSED 103 (472)
T ss_pred hhcceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCC
Confidence 34445666666643 5778887 333 3344444466765544 78999999999999999999999999
Q ss_pred CcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEee
Q 000378 84 CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLA 163 (1605)
Q Consensus 84 ~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA 163 (1605)
++|++|++ ||+.. ..+ -..+|-.++||.- -|--++
T Consensus 104 ~~v~vW~I----------Pe~~l---~~~----------------------ltepvv~L~gH~r----------rVg~V~ 138 (472)
T KOG0303|consen 104 TKVMVWQI----------PENGL---TRD----------------------LTEPVVELYGHQR----------RVGLVQ 138 (472)
T ss_pred ceEEEEEC----------CCccc---ccC----------------------cccceEEEeecce----------eEEEEe
Confidence 99999999 65541 111 1133447889887 888899
Q ss_pred eecC-CCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeee
Q 000378 164 CHPR-LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 164 ~~P~-~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~ 241 (1605)
+||- ..||+|++.|.+|.+||+.||+.++||. |-.=+.+..|+=||..|++..+|..|++||--+.+.---|.
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-----hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-----HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecC-----CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 9975 5699999999999999999999998865 89999999999999999999999999999988877766664
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=120.82 Aligned_cols=180 Identities=18% Similarity=0.143 Sum_probs=119.6
Q ss_pred CCceeEeCCCcceeee-ecC---ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEE-EEecCCc--EEeeccCCCc
Q 000378 23 QPHEAAFHPNQALIAV-AIG---TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDCT--IRSCDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g---~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~la-a~~~D~t--I~~wd~~~~q 95 (1605)
.+.+.+|||||+.||. +.+ ..|.+||..||.............+.+||| ||..|+ +...|+. |++||+++.+
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 5678999999999987 432 369999999998766544444556889999 776554 5666775 8888988753
Q ss_pred e-----------EEEeCCCccccccccC--ceeEeccCCCcceEEeccccccceeEEe-eeecCCCCcccccccCCCceE
Q 000378 96 S-----------FVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMSVTVVG-TVEGGRAPTKIKTDLKKPIVN 161 (1605)
Q Consensus 96 ~-----------~v~~sp~~~~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s~~~vg-t~eG~~~~~~ik~d~kkpV~~ 161 (1605)
. ...|||||+.+..+++ +.. ++|+++ ..+.+... |.+|+.. .+
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~-------~Iy~~d----l~~g~~~~Lt~~g~~~------------~~ 354 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKP-------QIYRVN----LASGKVSRLTFEGEQN------------LG 354 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCc-------eEEEEE----CCCCCEEEEecCCCCC------------cC
Confidence 2 5789999999885443 334 566666 43333221 3444332 35
Q ss_pred eeeecCCCeEEEEec-Cce--EEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCe--EEeeecC
Q 000378 162 LACHPRLPVLYVAYA-DGL--IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGT--LLAWDVS 232 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~-dg~--IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgt--l~~W~vs 232 (1605)
.+++|||..||..+. ++. |-.+|+.++.+. .|..+. .....+|+|||++|+ +..++|. |.+++..
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-----CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 689999999877654 444 445788888765 343311 122458999999988 4555665 4444443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-09 Score=120.92 Aligned_cols=179 Identities=18% Similarity=0.181 Sum_probs=139.8
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcce-eeeeecCCCCceEEEEecCCcEEeeccCCC-----c
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPV-VRMAYSPTSGHAVVAILEDCTIRSCDFDTE-----Q 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v-~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-----q 95 (1605)
.+-.+--.-++++|++ |.|+.|.|||.. |..+.+++..-.= ..-|.|| +|-.||+...---|+.|.+.-. |
T Consensus 189 ~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fq 266 (420)
T KOG2096|consen 189 DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQ 266 (420)
T ss_pred ceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchh
Confidence 3444455568899999 999999999977 9999986654333 4557899 9999999999999999987542 1
Q ss_pred e---------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccc-----
Q 000378 96 S---------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD----- 154 (1605)
Q Consensus 96 ~---------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d----- 154 (1605)
. ..+|||+.+.+. .|.||++ |. |+ .. | --+-.-+|-.+|+-
T Consensus 267 ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w-------ri--wd----td----V-rY~~~qDpk~Lk~g~~pl~ 328 (420)
T KOG2096|consen 267 EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW-------RI--WD----TD----V-RYEAGQDPKILKEGSAPLH 328 (420)
T ss_pred hhhhhheeccchhheeeeeeCCCcceeEEEecCCcE-------EE--ee----cc----c-eEecCCCchHhhcCCcchh
Confidence 1 889999999887 6999999 88 88 22 1 13334444444443
Q ss_pred --cCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeE
Q 000378 155 --LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTL 226 (1605)
Q Consensus 155 --~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl 226 (1605)
--.|+ -|+.+|.+.+||+++ .-.+++|+-.+|....++.- ||..-+.+++|+|||+.++ ||+|--++
T Consensus 329 aag~~p~-RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~---~h~~~Is~is~~~~g~~~atcGdr~vrv 398 (420)
T KOG2096|consen 329 AAGSEPV-RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED---IHSTTISSISYSSDGKYIATCGDRYVRV 398 (420)
T ss_pred hcCCCce-EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH---hhcCceeeEEecCCCcEEeeecceeeee
Confidence 12366 799999999999998 88999999999999877766 8999999999999999999 77765443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=130.63 Aligned_cols=155 Identities=20% Similarity=0.301 Sum_probs=118.5
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEeC
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~s 101 (1605)
.|.++.|||....|.||--++|++||...+...-- +.-+.-+.+||-+| +|+-|+.|+.|..+--.|++
T Consensus 568 ~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDld--------- 637 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLD--------- 637 (733)
T ss_pred ceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcc---------
Confidence 79999999999999999999999999885433333 44455568899999 88888888887765555541
Q ss_pred CCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEE
Q 000378 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181 (1605)
Q Consensus 102 p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR 181 (1605)
++.++..|+.-|.. .|+++|||++.|+++|||.||++-
T Consensus 638 --------------------------------lsskPyk~lr~H~~----------avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 638 --------------------------------LSSKPYKTLRLHEK----------AVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred --------------------------------cCcchhHHhhhhhh----------hhhhhhhccccceeeeecCCCcEE
Confidence 12334447777777 999999999999999999999998
Q ss_pred EEecccce-------EE--EEEeeccccccccceeEeecCCceEEEEecCCCeEEee
Q 000378 182 AYNIHTYA-------VH--YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 182 ~w~i~t~~-------v~--~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
+++--=|. +. =.|++--.....||=..-|||+.=|||+.++||||++|
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 87643222 21 14455222233478788899999999999999999999
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=124.17 Aligned_cols=124 Identities=20% Similarity=0.277 Sum_probs=102.5
Q ss_pred ccccc-cCCCCCCCCCceeEeCCCcc-eeee-ecCceEEEEeccCCce---eeeccCCcceeeeeecCCCCceEEEEecC
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQA-LIAV-AIGTYIIEFDTLTGSR---IASIDINSPVVRMAYSPTSGHAVVAILED 83 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~ga-llA~-a~g~~I~l~d~~tG~~---~~~l~~~~~v~~lA~SP~~g~~laa~~~D 83 (1605)
+-+.+ ||.. .|+-++|||+-. .||+ |+|.+|++||.+.|.+ +.+..|.+-|+-|.||-.-. .||+|..|
T Consensus 249 d~~Pf~gH~~----SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~Dd 323 (440)
T KOG0302|consen 249 DQRPFTGHTK----SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDD 323 (440)
T ss_pred cCcccccccc----chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCC
Confidence 34666 8999 999999999876 4566 9999999999999943 44489999999999995333 99999999
Q ss_pred CcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEee
Q 000378 84 CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLA 163 (1605)
Q Consensus 84 ~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA 163 (1605)
||+++||+-+. ++.++|.+|+=|+. ||+++.
T Consensus 324 Gt~~iwDLR~~---------------------------------------~~~~pVA~fk~Hk~----------pItsie 354 (440)
T KOG0302|consen 324 GTLSIWDLRQF---------------------------------------KSGQPVATFKYHKA----------PITSIE 354 (440)
T ss_pred ceEEEEEhhhc---------------------------------------cCCCcceeEEeccC----------CeeEEE
Confidence 99999999221 12255678888999 999999
Q ss_pred eec-CCCeEEEEecCceEEEEeccc
Q 000378 164 CHP-RLPVLYVAYADGLIRAYNIHT 187 (1605)
Q Consensus 164 ~~P-~~~vL~~a~~dg~IR~w~i~t 187 (1605)
+|| +.-+++++++|.+|-+||+..
T Consensus 355 W~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eccccCceEEeccCCCcEEEEEeec
Confidence 996 577888999999999999864
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-09 Score=126.23 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=153.6
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCcceeeeecC------ceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEE
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIG------TYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g------~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
-++.-+ |||- -|-|++-+|+|.+||+++- -.|+||...+=.+... .+|+-.|.+|+||| ||..|.+.
T Consensus 516 PEv~KLYGHGy----Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsv 590 (764)
T KOG1063|consen 516 PEVHKLYGHGY----EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSV 590 (764)
T ss_pred hhhHHhccCce----eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEe
Confidence 567777 9999 9999999999999999775 3699999888888774 99999999999999 99999999
Q ss_pred ecCCcEEeeccCCC------------ce----EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccce--eEEe-
Q 000378 81 LEDCTIRSCDFDTE------------QS----FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSV--TVVG- 140 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~------------q~----~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~--~~vg- 140 (1605)
|.|-|+.+|..... ++ .--++||.+..+ .|+|.+| .||- .... +.+-
T Consensus 591 sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V---------kVW~----~~~~~d~~i~~ 657 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV---------KVWE----EPDLRDKYISR 657 (764)
T ss_pred ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceE---------EEEe----ccCchhhhhhh
Confidence 99999999976331 11 334679999988 5999999 5687 3322 2111
Q ss_pred -eeecCCCCcccccccCCCceEeeeec-CCC----eEEEEecCceEEEEecc-------cceEEEEEeecccc-ccccce
Q 000378 141 -TVEGGRAPTKIKTDLKKPIVNLACHP-RLP----VLYVAYADGLIRAYNIH-------TYAVHYTLQLDNTI-KLLGAG 206 (1605)
Q Consensus 141 -t~eG~~~~~~ik~d~kkpV~~LA~~P-~~~----vL~~a~~dg~IR~w~i~-------t~~v~~tL~~~~~~-~~~g~~ 206 (1605)
-.. ++.++|+.+|++| +++ ++++|-.-|.|-+|+.. ++.-.+..++.++| |..-|.
T Consensus 658 ~a~~----------~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~ 727 (764)
T KOG1063|consen 658 FACL----------KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN 727 (764)
T ss_pred hchh----------ccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh
Confidence 112 3445999999984 455 99999999999999944 45544555554444 667888
Q ss_pred eEeecCC--------ceEE--EEecCCCeEEeeecC
Q 000378 207 AFAFHPT--------LEWL--FVGDRRGTLLAWDVS 232 (1605)
Q Consensus 207 a~Af~P~--------g~~l--~~G~~dgtl~~W~vs 232 (1605)
-|.++|+ .+|+ ++|+.|.++++..++
T Consensus 728 rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 728 RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999998 7787 699999999998764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-09 Score=115.49 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=150.8
Q ss_pred cccccc-cCCCCCCCCCceeEeCC--Ccceeee-ecCceEEEEeccCCceeee---ccCCcceeeeeecCCC-CceEEEE
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHP--NQALIAV-AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTS-GHAVVAI 80 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P--~gallA~-a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~-g~~laa~ 80 (1605)
..+..+ ||.+ +|--++|.+ -|-+||+ +.|+.|++|--.+|+=... ..|.++|++++|.|-+ |-+|+.+
T Consensus 47 ~ll~~L~Gh~G----PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca 122 (299)
T KOG1332|consen 47 KLLAELTGHSG----PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA 122 (299)
T ss_pred eeeeEecCCCC----CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEe
Confidence 345556 9999 999999988 9999999 9999999999999854433 8999999999999854 3789999
Q ss_pred ecCCcEEeeccCCC-ce--------------EEEeCCC---c------------cccccccCceeEeccCCCcceEEecc
Q 000378 81 LEDCTIRSCDFDTE-QS--------------FVLHSPE---K------------KMESISVDTEVHLALTPLQPVVFFGF 130 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~-q~--------------~v~~sp~---~------------~~~~~s~d~~ih~a~t~~~l~vw~~~ 130 (1605)
+.||+|.+-+++++ .. +|-..|. | |...++-|..| +. |..-
T Consensus 123 sSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~V-------ki--W~~~ 193 (299)
T KOG1332|consen 123 SSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLV-------KI--WKFD 193 (299)
T ss_pred eCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccce-------ee--eecC
Confidence 99999999999885 11 6666666 3 33336778888 77 5511
Q ss_pred ccccceeEEeeeecCCCCcccccccCCCceEeeeecCC----CeEEEEecCceEEEEeccc--ceEEEEEeecccccccc
Q 000378 131 HRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL----PVLYVAYADGLIRAYNIHT--YAVHYTLQLDNTIKLLG 204 (1605)
Q Consensus 131 ~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~----~vL~~a~~dg~IR~w~i~t--~~v~~tL~~~~~~~~~g 204 (1605)
.. +-..-.|++||++ =||.+|..|.- -.+||+|.||.+-+|-... ..-.-||..+ --.-
T Consensus 194 ~~--~w~~e~~l~~H~d----------wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~---f~~~ 258 (299)
T KOG1332|consen 194 SD--SWKLERTLEGHKD----------WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE---FPDV 258 (299)
T ss_pred Cc--chhhhhhhhhcch----------hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc---CCcc
Confidence 11 2222236999999 99999999876 4689999999999997652 2223344442 1234
Q ss_pred ceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 205 ~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
+-.+.||++|-+|+|++-|..+.+|-=+
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7789999999999999999999999644
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-09 Score=119.67 Aligned_cols=204 Identities=18% Similarity=0.250 Sum_probs=145.5
Q ss_pred ccc-cCCCCCCCCCceeEeCCCc-ceeee-ecCceEEEEeccCCceeee----ccCCcceeeeeecCCCCceEEEEecCC
Q 000378 12 RHV-GRGDHKPLQPHEAAFHPNQ-ALIAV-AIGTYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 12 ~~~-g~~~~~~~~v~~~aF~P~g-allA~-a~g~~I~l~d~~tG~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
..+ |||+ .++.+-|||+- +||.+ |-|..|++||..|+.-+.+ .+|-..|-++-||+ +|..|+++.-|.
T Consensus 129 ~~~~ghG~----sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDh 203 (385)
T KOG1034|consen 129 KNYRGHGG----SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDH 203 (385)
T ss_pred cceeccCc----cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcc
Confidence 344 8999 99999999997 45555 9999999999999999888 78999999999999 999999999999
Q ss_pred cEEeeccCCC------ceEEEeCCCcccc-------cc--ccCceeEe------------ccCCC---cceEEe------
Q 000378 85 TIRSCDFDTE------QSFVLHSPEKKME-------SI--SVDTEVHL------------ALTPL---QPVVFF------ 128 (1605)
Q Consensus 85 tI~~wd~~~~------q~~v~~sp~~~~~-------~~--s~d~~ih~------------a~t~~---~l~vw~------ 128 (1605)
+|++|++.+. ..+.-|+|++.+. .. -+-+.+|= +|+-. +-+.|.
T Consensus 204 slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e 283 (385)
T KOG1034|consen 204 SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEE 283 (385)
T ss_pred eEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhh
Confidence 9999999963 2277889988872 21 01122331 11110 112233
Q ss_pred cccccc----ceeEEeeeecCCCCcccccccCCCceEe--eeecCCCeEEEEecCceEEEEecccceE-EE-EEeecccc
Q 000378 129 GFHRRM----SVTVVGTVEGGRAPTKIKTDLKKPIVNL--ACHPRLPVLYVAYADGLIRAYNIHTYAV-HY-TLQLDNTI 200 (1605)
Q Consensus 129 ~~~~~~----s~~~vgt~eG~~~~~~ik~d~kkpV~~L--A~~P~~~vL~~a~~dg~IR~w~i~t~~v-~~-tL~~~~~~ 200 (1605)
.+|..+ ..+.++++.=-.- .|+=+ ||-|.+.+||.|-..|.|-.||+.+-.+ +. ||.- .+
T Consensus 284 ~~~~vkp~es~~Ti~~~~~~~~c----------~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~--s~ 351 (385)
T KOG1034|consen 284 SIHNVKPPESATTILGEFDYPMC----------DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH--SK 351 (385)
T ss_pred hhhccCCCccceeeeeEeccCcc----------ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe--cc
Confidence 122221 1122222111111 34555 4459999999999999999999999988 43 2222 23
Q ss_pred ccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 201 KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 201 ~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
-..-|+-++|+-||.+|+.--+||++.-||.-
T Consensus 352 ~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 352 SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 33467899999999999988899999999863
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=115.41 Aligned_cols=184 Identities=13% Similarity=0.160 Sum_probs=133.8
Q ss_pred CceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-----
Q 000378 24 PHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1605)
Q Consensus 24 v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----- 96 (1605)
-.|.-|++.|-+||+ -.|++|.+||-.|=..-.+ -+|.-||++++||+ ||+.|+..+.|+.|++||+-.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 468999999999999 6688999999999876666 88999999999999 999999999999999999977532
Q ss_pred ------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc----eEeeeec
Q 000378 97 ------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI----VNLACHP 166 (1605)
Q Consensus 97 ------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV----~~LA~~P 166 (1605)
.+-|+|-++-.. | .++ + ..+..++ +|.. +-.+-+-+|-.+.. ....|++
T Consensus 105 f~spv~~~q~hp~k~n~~------v---a~~------~----~~sp~vi-~~s~-~~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKC------V---ATI------M----EESPVVI-DFSD-PKHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ccCccceeeeccccCCeE------E---EEE------e----cCCcEEE-EecC-CceeeccCCCccccccccccccccC
Confidence 233333333111 1 000 0 1111111 1111 00011222222222 2235779
Q ss_pred CCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 167 ~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
+|...++|-.-|.+-+||.+|....--+.+.. ...+..+-|+-.|+-+..-..|++|+.++++
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999999999999999999999887777721 3667789999999999999999999999988
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-09 Score=121.53 Aligned_cols=199 Identities=11% Similarity=0.166 Sum_probs=148.1
Q ss_pred Cccccccccccccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEe---------------------------ccCC
Q 000378 1 MEWATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFD---------------------------TLTG 52 (1605)
Q Consensus 1 m~W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d---------------------------~~tG 52 (1605)
|=|++.|-..++.+ -|-+ -|..++++- ...+-++.|++|+.|- +.-|
T Consensus 92 kiWnlsqR~~~~~f~AH~G----~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcG 166 (433)
T KOG0268|consen 92 KIWNLSQRECIRTFKAHEG----LVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCG 166 (433)
T ss_pred EEEehhhhhhhheeecccC----ceeeEEecc-cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccC
Confidence 34889987778888 6777 788888887 7788778888888875 1123
Q ss_pred ceeee--ccCCc----------ceeeeeecCCCCceEEEEecCCcEEeeccCCCce-----------EEEeCCCccccc-
Q 000378 53 SRIAS--IDINS----------PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----------FVLHSPEKKMES- 108 (1605)
Q Consensus 53 ~~~~~--l~~~~----------~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~-----------~v~~sp~~~~~~- 108 (1605)
..|++ ..... .+.++.|+|.--.+|+++..|.+|.|+|.-+.++ .+.++|++=..-
T Consensus 167 e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~ 246 (433)
T KOG0268|consen 167 EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVA 246 (433)
T ss_pred ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceee
Confidence 34444 22222 3566778887778899999999999999988644 888999655443
Q ss_pred cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccc
Q 000378 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188 (1605)
Q Consensus 109 ~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~ 188 (1605)
++.|-.+ ..|+ -|.--++++...||.+ .|-+++|||-|+-.++||-|.+||+|++..+
T Consensus 247 a~ED~nl---------Y~~D---mR~l~~p~~v~~dhvs----------AV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 247 ANEDHNL---------YTYD---MRNLSRPLNVHKDHVS----------AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred ccccccc---------eehh---hhhhcccchhhcccce----------eEEEeccCCCcchhccccccceEEEeecCCC
Confidence 4666333 1122 2333455656778888 9999999999999999999999999999876
Q ss_pred eE---EEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 189 AV---HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 189 ~v---~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.- -||= ..+-|-|+.||-|.+.|++||+|+.|++|-.-
T Consensus 305 ~SRdiYhtk------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 305 HSRDIYHTK------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cchhhhhHh------hhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 42 2232 34678899999999999999999999999654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.9e-09 Score=127.21 Aligned_cols=209 Identities=20% Similarity=0.282 Sum_probs=144.8
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCC--ceEEEEecCCcE
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSG--HAVVAILEDCTI 86 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g--~~laa~~~D~tI 86 (1605)
..-+ |+.. -=+...||+|++.|..-.++.|++|-..||-.+.+ -++.+++.++.+-|..- ..+...+.||+|
T Consensus 9 ~~~lgg~n~----~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I 84 (792)
T KOG1963|consen 9 PALLGGRNG----NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTI 84 (792)
T ss_pred eeeeccccc----eecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccE
Confidence 3335 5555 45678899999999999999999999999999988 89999999999998444 456799999999
Q ss_pred EeeccCCCc---e-------EEEe--------------CCCc-cccc-cccC----------------------------
Q 000378 87 RSCDFDTEQ---S-------FVLH--------------SPEK-KMES-ISVD---------------------------- 112 (1605)
Q Consensus 87 ~~wd~~~~q---~-------~v~~--------------sp~~-~~~~-~s~d---------------------------- 112 (1605)
+.||..+.. + .++. |-+. .++. .|.+
T Consensus 85 ~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~ 164 (792)
T KOG1963|consen 85 RVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPK 164 (792)
T ss_pred EEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCc
Confidence 999998842 2 1111 1000 0000 0111
Q ss_pred -------ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEec
Q 000378 113 -------TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI 185 (1605)
Q Consensus 113 -------~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i 185 (1605)
+++-...+--...+|| +.+.+ -|...-++--.|-+++++.||||.+.++|+|..||.|++|.=
T Consensus 165 ~I~~~~~ge~~~i~~~~~~~~~~----v~~~~------~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCKIHIYF----VPKHT------KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred cEEEcCCceEEEEEEeeeEEEEE----ecccc------eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 1110000111122233 11111 222333344456678999999999999999999999999963
Q ss_pred c---cceEEE-EEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCe
Q 000378 186 H---TYAVHY-TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS 237 (1605)
Q Consensus 186 ~---t~~v~~-tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~ 237 (1605)
- +-.-.| +|-= |..-|++++|++||..|-+|++.|-+-+||+.++.+.
T Consensus 235 ~~~~~~~~t~t~lHW----H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq 286 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHW----HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ 286 (792)
T ss_pred cccccccccceEEEe----cccccceeEEecCCceEeecccceEEEEEeecCCCcc
Confidence 2 222233 4444 8889999999999999999999999999999987654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=126.50 Aligned_cols=215 Identities=18% Similarity=0.199 Sum_probs=150.9
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEec------cCCceeee---ccCCcceeeeeecCCCCceEEEEecCC
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDT------LTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~------~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
.|-+ .+++++|||..-.|++ +.+..|++|.. ..+..+++ -+|.+||-.+++++ .|+.+-+|+.|+
T Consensus 292 s~~d----~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 292 SHDD----CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDG 366 (577)
T ss_pred cchh----hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCc
Confidence 4666 8999999999999999 99999999997 22233344 68999999999999 999999999999
Q ss_pred cEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeee
Q 000378 85 TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 85 tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~ 164 (1605)
+||.|++ |.....--|.|-++ ..|++.||.+ .||.|||
T Consensus 367 ~I~~w~~----------p~n~dp~ds~dp~v----------------------l~~~l~Ghtd----------avw~l~~ 404 (577)
T KOG0642|consen 367 TIRCWNL----------PPNQDPDDSYDPSV----------------------LSGTLLGHTD----------AVWLLAL 404 (577)
T ss_pred eeeeecc----------CCCCCcccccCcch----------------------hccceecccc----------ceeeeee
Confidence 9999998 31110001333222 1357999999 9999999
Q ss_pred ecCCCeEEEEecCceEEEEecccceEEEEEee--ccccccc---------------------------------------
Q 000378 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLL--------------------------------------- 203 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~--~~~~~~~--------------------------------------- 203 (1605)
|+-...|.+.|.||++|+|+...... +|+.. +-.+++.
T Consensus 405 s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 405 SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred cccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 97777799999999999999998888 33332 1112221
Q ss_pred -------cceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCc-ccccccccCCccccc
Q 000378 204 -------GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPP-MQANFFEPASIESID 275 (1605)
Q Consensus 204 -------g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~-~~a~~~~~a~~es~d 275 (1605)
-++-+.-||++.+.|++-.|++|++.|..+..+...=+ -. .+=-|-..+.||+|- |.-+-=.+.+.-++|
T Consensus 484 ~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred CcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-ec-cceecceeecCCCceEEeecCCceeehhhcc
Confidence 11134459999999999999999999998776632111 00 000123345666664 333334455566666
Q ss_pred ccee
Q 000378 276 IPRI 279 (1605)
Q Consensus 276 ~~~i 279 (1605)
++.+
T Consensus 562 ~k~~ 565 (577)
T KOG0642|consen 562 VKTC 565 (577)
T ss_pred chhe
Confidence 6655
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-09 Score=119.84 Aligned_cols=180 Identities=15% Similarity=0.186 Sum_probs=134.0
Q ss_pred ceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCC-CCceEEEEecCCcEEeeccCC--CceEEEeCCCc-c--
Q 000378 34 ALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPT-SGHAVVAILEDCTIRSCDFDT--EQSFVLHSPEK-K-- 105 (1605)
Q Consensus 34 allA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~-~g~~laa~~~D~tI~~wd~~~--~q~~v~~sp~~-~-- 105 (1605)
-.+|| =-+..|++||.-||..+.. -++.+.+.-|+|+-. ++|.|.+++.||+||+||+-+ +++.+.|-.+- +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 44666 3355999999999999998 899999999999854 459999999999999999988 44455444222 1
Q ss_pred -ccc-cccCceeEeccCC-----CcceEEeccccccceeEEee-eecCCCCcccccccCCCceEeeeecCCC-eEEEEec
Q 000378 106 -MES-ISVDTEVHLALTP-----LQPVVFFGFHRRMSVTVVGT-VEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYA 176 (1605)
Q Consensus 106 -~~~-~s~d~~ih~a~t~-----~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~d~kkpV~~LA~~P~~~-vL~~a~~ 176 (1605)
.++ +..+.-+|+. |+ +.+++|. -|+.-+.++- .|-|.+ -|++|-|||..| .|++||.
T Consensus 121 ~~ld~nck~~ii~~G-tE~~~s~A~v~lwD---vR~~qq~l~~~~eSH~D----------DVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACG-TELTRSDASVVLWD---VRSEQQLLRQLNESHND----------DVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred eEeeccCcCCeEEec-cccccCceEEEEEE---eccccchhhhhhhhccC----------cceeEEecCCCCCeEEeecc
Confidence 111 3466677776 44 3456677 2444454764 899999 999999998666 7899999
Q ss_pred CceEEEEecccceEEEEEeecccc----ccccceeEeecCCc-eEEEEecCCCeEEeeecC
Q 000378 177 DGLIRAYNIHTYAVHYTLQLDNTI----KLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~~tL~~~~~~----~~~g~~a~Af~P~g-~~l~~G~~dgtl~~W~vs 232 (1605)
||+|-+||+.--. ..|.-+ |...|..++|+-.+ +-|+|=++.+|..+|.+-
T Consensus 187 DGLvnlfD~~~d~-----EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 187 DGLVNLFDTKKDN-----EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred cceEEeeecCCCc-----chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999999986541 123222 33457789998888 338899999999999986
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=116.26 Aligned_cols=192 Identities=17% Similarity=0.221 Sum_probs=158.0
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCce---eee-ccCCcceeeeeec-CCCCceEEEEecCCcEEe
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSR---IAS-IDINSPVVRMAYS-PTSGHAVVAILEDCTIRS 88 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~---~~~-l~~~~~v~~lA~S-P~~g~~laa~~~D~tI~~ 88 (1605)
+|.+ -+|.+..-=-|+.||+ +-|++||+|++...-. +.. .+|..||..++|. |--|.+||+.++|+-|-+
T Consensus 9 ~H~D----~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 9 QHED----MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhh----hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 5777 7888888889999999 9999999999876542 333 8999999999999 989999999999999999
Q ss_pred eccCCCce--------------EEEeCCC--ccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccc
Q 000378 89 CDFDTEQS--------------FVLHSPE--KKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI 151 (1605)
Q Consensus 89 wd~~~~q~--------------~v~~sp~--~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i 151 (1605)
|.-.+.+- +|++-|- |-+++ +|+||.| ...-+ .-+|+-..+||
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v-------svl~~-------------~~~g~w~t~ki 144 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV-------SVLTY-------------DSSGGWTTSKI 144 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE-------EEEEE-------------cCCCCccchhh
Confidence 98776421 7888775 56677 7999999 43111 23466777788
Q ss_pred ccccCCCceEeeeecC---C-----------CeEEEEecCceEEEEecccceE--EEEEeeccccccccceeEeecCCc-
Q 000378 152 KTDLKKPIVNLACHPR---L-----------PVLYVAYADGLIRAYNIHTYAV--HYTLQLDNTIKLLGAGAFAFHPTL- 214 (1605)
Q Consensus 152 k~d~kkpV~~LA~~P~---~-----------~vL~~a~~dg~IR~w~i~t~~v--~~tL~~~~~~~~~g~~a~Af~P~g- 214 (1605)
-+-|.--|.++...|- | .-|+||+.|.+|++|+..++.= -.||+. |..=|+-+|..|..
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~----H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG----HKDWVRDVAWAPSVG 220 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh----cchhhhhhhhccccC
Confidence 8888889999998876 4 3499999999999999999632 237899 99999999999986
Q ss_pred ---eEEEEecCCCeEEeeecCCC
Q 000378 215 ---EWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 215 ---~~l~~G~~dgtl~~W~vs~~ 234 (1605)
-.|+++|.||++-||-...|
T Consensus 221 l~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred CCceeeEEecCCCcEEEEEecCc
Confidence 57899999999999988754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-08 Score=111.93 Aligned_cols=196 Identities=21% Similarity=0.287 Sum_probs=131.0
Q ss_pred CCCceeEeCCCcceeeee--cCceEEEEeccC-Cceeee---c-----------cCCcceeeeeecCCCCceEEEEecCC
Q 000378 22 LQPHEAAFHPNQALIAVA--IGTYIIEFDTLT-GSRIAS---I-----------DINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~a--~g~~I~l~d~~t-G~~~~~---l-----------~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
..|..++++|||++|.++ .+..|.+|+... |+.... . .-++-.+.+.|+|++..++|+-+-..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 378899999999999995 688999999887 544443 2 13466789999995557888888889
Q ss_pred cEEeeccCCCc--e---------------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccc-cccceeEEeeeec
Q 000378 85 TIRSCDFDTEQ--S---------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFH-RRMSVTVVGTVEG 144 (1605)
Q Consensus 85 tI~~wd~~~~q--~---------------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~-~~~s~~~vgt~eG 144 (1605)
.|+.++++.+. . +++|+|||+.+=+ --+.+| .||. .. ..-..+.+.++.-
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v---------~v~~-~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV---------SVFD-YDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEE---------EEEE-EETTTTEEEEEEEEES
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcE---------EEEe-ecccCCceeEEEEeee
Confidence 99999998753 1 7889999887653 233555 2233 11 0112233332221
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEe-cCceEEEEec--ccceEEEEEeecccccccc--ceeEeecCCceEEEE
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNI--HTYAVHYTLQLDNTIKLLG--AGAFAFHPTLEWLFV 219 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~-~dg~IR~w~i--~t~~v~~tL~~~~~~~~~g--~~a~Af~P~g~~l~~ 219 (1605)
... ...-..--..+++|||+.+||++. .++.|-+|++ .+|.... ++. +...| -+.|+|+|+|+||+|
T Consensus 237 ~~~----~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~-~~~---~~~~G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 237 LPE----GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL-VQT---VPTGGKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp CET----TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE-EEE---EEESSSSEEEEEE-TTSSEEEE
T ss_pred ccc----cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE-EEE---EeCCCCCccEEEEeCCCCEEEE
Confidence 100 001113578899999999999976 4678999999 5676652 222 23333 479999999999996
Q ss_pred ec-CCCeEEeeecCCCC
Q 000378 220 GD-RRGTLLAWDVSIER 235 (1605)
Q Consensus 220 G~-~dgtl~~W~vs~~~ 235 (1605)
+. .+++|.+|++++++
T Consensus 309 a~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EETTTTEEEEEEEETTT
T ss_pred EecCCCeEEEEEEeCCC
Confidence 65 89999999998665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-09 Score=117.24 Aligned_cols=209 Identities=19% Similarity=0.233 Sum_probs=142.6
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|+..+-.--|.+ +|-- +|.|+|||+||+.|.+ |-|.-|++||++.|+.+--+...+||...-|-|.+...++|.
T Consensus 50 ~D~~T~~iar~lsaH~~----pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~ 125 (405)
T KOG1273|consen 50 YDFDTFRIARMLSAHVR----PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVAT 125 (405)
T ss_pred EEccccchhhhhhcccc----ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEE
Confidence 444443333444 5666 8999999999999998 999999999999999777799999999999999888899998
Q ss_pred ecCCcEEeeccCCC-ce---------------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeee
Q 000378 81 LEDCTIRSCDFDTE-QS---------------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~-q~---------------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
.-+.+=.+-|+.+. +. |+.|.+-|++|-. -+-|-+|+ .+..|.+.|.-+.
T Consensus 126 ~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv-------------~~a~t~e~vas~r 192 (405)
T KOG1273|consen 126 IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV-------------YDAETLECVASFR 192 (405)
T ss_pred EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE-------------Eecchheeeeeee
Confidence 88888888888863 44 3344455554431 11122222 2222322221111
Q ss_pred cCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccc-------eEE--EEEeeccccccccceeEeecCCc
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-------AVH--YTLQLDNTIKLLGAGAFAFHPTL 214 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~-------~v~--~tL~~~~~~~~~g~~a~Af~P~g 214 (1605)
|-+ -..|+++-++-+|..|+.-..|++||-|+++.- ++- +.+|- . +.-.-=.+..|+-||
T Consensus 193 -------its--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD-v-VNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 193 -------ITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD-V-VNKLQWKKCCFSGDG 261 (405)
T ss_pred -------ech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH-H-HhhhhhhheeecCCc
Confidence 100 126788999999999999999999999999831 111 22221 0 000112378899999
Q ss_pred eEEEEec-CCCeEEeeecCCCCCeeeee
Q 000378 215 EWLFVGD-RRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 215 ~~l~~G~-~dgtl~~W~vs~~~~~m~g~ 241 (1605)
|.|+.|+ +-+-|.+|--++- |++-|
T Consensus 262 eYv~a~s~~aHaLYIWE~~~G--sLVKI 287 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIG--SLVKI 287 (405)
T ss_pred cEEEeccccceeEEEEecCCc--ceeee
Confidence 9999766 8889999976532 34444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.1e-09 Score=126.33 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=140.4
Q ss_pred ccccccccccc--c-cCCCCCCCCCceeEeCCCcceeee--ecCceEEEEeccC------------------C-------
Q 000378 3 WATVQHLDLRH--V-GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLT------------------G------- 52 (1605)
Q Consensus 3 W~~~~~~~l~~--~-g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~t------------------G------- 52 (1605)
|++.+..-+.. . ||.+ .|.++||+|+-..+-+ +-|..|.|||..- |
T Consensus 127 Wdvk~s~l~G~~~~~GH~~----SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTG----SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeccceeecceeeccccc----ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 88888655555 4 9999 9999999997665555 8899999999641 1
Q ss_pred --ceeee-ccCCcceee---eeecCCCCceEEEEec-CCcEEeeccCCCce---------------------EEEeC--C
Q 000378 53 --SRIAS-IDINSPVVR---MAYSPTSGHAVVAILE-DCTIRSCDFDTEQS---------------------FVLHS--P 102 (1605)
Q Consensus 53 --~~~~~-l~~~~~v~~---lA~SP~~g~~laa~~~-D~tI~~wd~~~~q~---------------------~v~~s--p 102 (1605)
++|+. +.++..+.+ +-|.- |-|+||+.++ |++||.||+-..++ .+-+. .
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 11111 333333333 33444 6678888888 99999999987533 11111 2
Q ss_pred Ccccc-ccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEE
Q 000378 103 EKKME-SISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181 (1605)
Q Consensus 103 ~~~~~-~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR 181 (1605)
-|.++ |.+.|++| ..|+ -+..+..+++.+.|+..-| -.+|. -.+||+..|+||++|..+-
T Consensus 282 sGt~L~AsCtD~sI---------y~yn--m~s~s~sP~~~~sg~~~~s----f~vks----~lSpd~~~l~SgSsd~~ay 342 (720)
T KOG0321|consen 282 SGTYLFASCTDNSI---------YFYN--MRSLSISPVAEFSGKLNSS----FYVKS----ELSPDDCSLLSGSSDEQAY 342 (720)
T ss_pred CCCeEEEEecCCcE---------EEEe--ccccCcCchhhccCcccce----eeeee----ecCCCCceEeccCCCccee
Confidence 22333 34677777 4476 2334667777788887722 22222 2469999999999999999
Q ss_pred EEecccceEEE-EEeeccccccccceeEee--cCCceEEEEecCCCeEEeeecC
Q 000378 182 AYNIHTYAVHY-TLQLDNTIKLLGAGAFAF--HPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 182 ~w~i~t~~v~~-tL~~~~~~~~~g~~a~Af--~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
+|.|.+-++-. .|.+ |..-|.+++. +++..++.+ ++|-|+++|++.
T Consensus 343 iw~vs~~e~~~~~l~G----ht~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l~ 391 (720)
T KOG0321|consen 343 IWVVSSPEAPPALLLG----HTREVTTVRWLPSATTPVATC-SDDFRVKIWRLS 391 (720)
T ss_pred eeeecCccCChhhhhC----cceEEEEEeeccccCCCceee-ccCcceEEEecc
Confidence 99999887655 4556 7788888888 678888888 999999999995
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=125.15 Aligned_cols=202 Identities=16% Similarity=0.183 Sum_probs=145.1
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEE------eccCCceeee-----ccCCcceeeeeecCCCCceEEEEec
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEF------DTLTGSRIAS-----IDINSPVVRMAYSPTSGHAVVAILE 82 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~------d~~tG~~~~~-----l~~~~~v~~lA~SP~~g~~laa~~~ 82 (1605)
+|.+ .|=|++.++++..+-+ +.|.+|..| |...+-..++ ++|..-|+-+|||+ .-..|++.+.
T Consensus 342 aH~g----PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~ 416 (577)
T KOG0642|consen 342 AHEG----PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSS 416 (577)
T ss_pred cccC----ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecC
Confidence 7888 9999999999999999 999999999 5555553333 89999999999998 4457999999
Q ss_pred CCcEEeeccCCCceEEEeC-CCccccccccC---ceeEeccCCCcc--eEEeccccccceeEEeeeecCCCCcccccccC
Q 000378 83 DCTIRSCDFDTEQSFVLHS-PEKKMESISVD---TEVHLALTPLQP--VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLK 156 (1605)
Q Consensus 83 D~tI~~wd~~~~q~~v~~s-p~~~~~~~s~d---~~ih~a~t~~~l--~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~k 156 (1605)
|+|+|+|+..-+++ ..|. |...-...|-| +++-+++.-.+. -+.+ .-..+..+-+++-...+...-.+
T Consensus 417 DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~---~~ev~s~~~~~~s~~~~~~~~~~-- 490 (577)
T KOG0642|consen 417 DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSID---DMEVVSDLLIFESSASPGPRRYP-- 490 (577)
T ss_pred CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccch---hhhhhhheeeccccCCCcccccC--
Confidence 99999999988888 4444 33332334444 111111111111 0011 01122222233333332211111
Q ss_pred CCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 157 KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
-|.-+.-||-+++++++-+|+.||.+|..+|.++.-... |..++.++|+-|.|=.|.+|++||++.+|-+.
T Consensus 491 -~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a----~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 491 -QINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA----HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred -ccceEEecCCCCeeEecccCCceecccccccccchheee----ccceecceeecCCCceEEeecCCceeehhhcc
Confidence 244466689999999999999999999999999866666 99999999999999999999999999999885
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=122.04 Aligned_cols=200 Identities=20% Similarity=0.171 Sum_probs=140.3
Q ss_pred CCceeEeCCCcceeee---ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEe--cCCcEEeeccCC---
Q 000378 23 QPHEAAFHPNQALIAV---AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAIL--EDCTIRSCDFDT--- 93 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~---a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~--~D~tI~~wd~~~--- 93 (1605)
...|+||||+|+++|+ +...+|++||+.+-....- .+|--.|.-+|||| ++..|++.. +|+.|-.||.--
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp-~~kyvvSVGsQHDMIVnv~dWr~N~~ 158 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSP-GNKYVVSVGSQHDMIVNVNDWRVNSS 158 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecC-CCcEEEeeccccceEEEhhhhhhccc
Confidence 6789999999999999 4677899999998887766 89999999999999 777777544 688999997532
Q ss_pred ---C-----ceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCc---------------c
Q 000378 94 ---E-----QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT---------------K 150 (1605)
Q Consensus 94 ---~-----q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~---------------~ 150 (1605)
+ -+.|+||-||-+-.++.-.-| ++|.-.+-.|.+..-+ +-|-.... -
T Consensus 159 ~asnkiss~Vsav~fsEdgSYfvT~gnrHv-------k~wyl~~~~KykdpiP---l~gRs~~lg~lr~n~f~avaCg~g 228 (1080)
T KOG1408|consen 159 GASNKISSVVSAVAFSEDGSYFVTSGNRHV-------KLWYLQIQSKYKDPIP---LPGRSYFLGNLRFNEFLAVACGVG 228 (1080)
T ss_pred ccccccceeEEEEEEccCCceeeeeeeeeE-------EEEEeeccccccCCcc---ccchhhhccccccchhhhhhhcCc
Confidence 1 238999999988877777777 7744333222221111 11111100 0
Q ss_pred cccccCCCceE----eeee--------------------cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccce
Q 000378 151 IKTDLKKPIVN----LACH--------------------PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG 206 (1605)
Q Consensus 151 ik~d~kkpV~~----LA~~--------------------P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~ 206 (1605)
||-|---.|+. +-|| =...++++|-+||+||++|-.|-.-.-||+. -|+-|+.
T Consensus 229 icAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr---~halg~d 305 (1080)
T KOG1408|consen 229 ICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPR---SHALGSD 305 (1080)
T ss_pred ccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhcccccc---ccccccc
Confidence 11111111111 0111 1567899999999999999998877767765 2444332
Q ss_pred -----------------------eEeecCCceEEEEecCCCeEEeeecC-CCCC
Q 000378 207 -----------------------AFAFHPTLEWLFVGDRRGTLLAWDVS-IERP 236 (1605)
Q Consensus 207 -----------------------a~Af~P~g~~l~~G~~dgtl~~W~vs-~~~~ 236 (1605)
|.-|.|+-+||.+==.|+.|.+|||. ++++
T Consensus 306 ~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv 359 (1080)
T KOG1408|consen 306 TANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV 359 (1080)
T ss_pred hhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc
Confidence 78899999999999999999999998 5555
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=105.61 Aligned_cols=144 Identities=14% Similarity=0.198 Sum_probs=103.6
Q ss_pred eeEeCCCcceeeeecCc-----------eEEEEec-cCCceeee--ccCCcceeeeeecCCCCceEEE--EecCCcEEee
Q 000378 26 EAAFHPNQALIAVAIGT-----------YIIEFDT-LTGSRIAS--IDINSPVVRMAYSPTSGHAVVA--ILEDCTIRSC 89 (1605)
Q Consensus 26 ~~aF~P~gallA~a~g~-----------~I~l~d~-~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa--~~~D~tI~~w 89 (1605)
.+.|||+|..|++-+.+ ...+|-. ..+..... +....+|..++||| +|..+|+ |..+..|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEEE
Confidence 47899999999984442 2444443 22333444 55566799999999 6765443 4577899999
Q ss_pred ccCCCce---------EEEeCCCcccccc-ccC---ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccC
Q 000378 90 DFDTEQS---------FVLHSPEKKMESI-SVD---TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLK 156 (1605)
Q Consensus 90 d~~~~q~---------~v~~sp~~~~~~~-s~d---~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~k 156 (1605)
|+..+.. .|.|||+|+.++. +-+ |++ +. |+ ..+.+.+.+.+- .
T Consensus 89 d~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l-------~~--wd----~~~~~~i~~~~~-~---------- 144 (194)
T PF08662_consen 89 DVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDL-------EF--WD----VRKKKKISTFEH-S---------- 144 (194)
T ss_pred cCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEE-------EE--EE----CCCCEEeecccc-C----------
Confidence 9976422 8999999999995 323 456 44 99 778888866542 2
Q ss_pred CCceEeeeecCCCeEEEEec------CceEEEEecccceEEEEEee
Q 000378 157 KPIVNLACHPRLPVLYVAYA------DGLIRAYNIHTYAVHYTLQL 196 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a~~------dg~IR~w~i~t~~v~~tL~~ 196 (1605)
-++.++++|||..|+++.. |+-+++|+.+ |..++....
T Consensus 145 -~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~~ 188 (194)
T PF08662_consen 145 -DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKPF 188 (194)
T ss_pred -cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecch
Confidence 3689999999999999974 8999999984 777765443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-08 Score=114.42 Aligned_cols=178 Identities=18% Similarity=0.110 Sum_probs=120.2
Q ss_pred eEeCCCcceeeeecC----ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCC---cEEeeccCCCce---
Q 000378 27 AAFHPNQALIAVAIG----TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC---TIRSCDFDTEQS--- 96 (1605)
Q Consensus 27 ~aF~P~gallA~a~g----~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~---tI~~wd~~~~q~--- 96 (1605)
..|+...+++...-+ ..|.++|...+.....+....++.+.+||| ||..|+-.+.+. .|++||+.+.+.
T Consensus 179 g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~l 257 (448)
T PRK04792 179 GAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKV 257 (448)
T ss_pred ccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEe
Confidence 468888887777333 377888976655555578888999999999 887777765532 599999987432
Q ss_pred --------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeec
Q 000378 97 --------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 97 --------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P 166 (1605)
...|||||+.++. +.|+.. ++|+|+ ..+.+.. .+..|.. -+.+.+|||
T Consensus 258 t~~~g~~~~~~wSPDG~~La~~~~~~g~~-------~Iy~~d----l~tg~~~-~lt~~~~----------~~~~p~wSp 315 (448)
T PRK04792 258 TSFPGINGAPRFSPDGKKLALVLSKDGQP-------EIYVVD----IATKALT-RITRHRA----------IDTEPSWHP 315 (448)
T ss_pred cCCCCCcCCeeECCCCCEEEEEEeCCCCe-------EEEEEE----CCCCCeE-ECccCCC----------CccceEECC
Confidence 5789999999884 444554 567777 4433322 3333333 467789999
Q ss_pred CCCeEEEEec-Cc--eEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEeeecC
Q 000378 167 RLPVLYVAYA-DG--LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 167 ~~~vL~~a~~-dg--~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
|+..|+..+. +| .|-.||+.++++. .|+. +.......+|+|||++|+ ++.+++...+|-++
T Consensus 316 DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~----~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 316 DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTF----EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEE-EEec----CCCCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 9998876664 34 4555678888876 4432 222233568999999998 55566766665444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.4e-08 Score=114.38 Aligned_cols=204 Identities=14% Similarity=0.168 Sum_probs=152.8
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCc----------------------------
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGS---------------------------- 53 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~---------------------------- 53 (1605)
|.....+-.+.+ -|-+ .|-|++---+|.||--+-|+.|.+||-+=-+
T Consensus 272 w~~~~~~~~k~~~aH~g----gv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDG----GVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred EeCCCceEEeEeeecCC----ceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 444444444444 3555 7999999999999987889999999943111
Q ss_pred -------------eeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-----------EEEeCCCcccccc
Q 000378 54 -------------RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----------FVLHSPEKKMESI 109 (1605)
Q Consensus 54 -------------~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~-----------~v~~sp~~~~~~~ 109 (1605)
.+.+.+|+....-+|--| +...++..++|+++++|+ .++. |+.|+|-| .+++
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAV 423 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEE
Confidence 122356677777788888 777889999999999999 4433 99999999 6664
Q ss_pred ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccce
Q 000378 110 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1605)
Q Consensus 110 s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~ 189 (1605)
+.- +. . |+ ++ ..|- .+..-||+| ..|+..++|+|||-+||+||-|+.|-+|-|...-
T Consensus 424 Gt~-~G--------~--w~----V~------d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 424 GTA-TG--------R--WF----VL------DTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred eec-cc--------e--EE----EE------eccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 332 22 2 55 22 1222 334456777 7899999999999999999999999999999999
Q ss_pred EEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC--CCCCeee
Q 000378 190 VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS--IERPSMI 239 (1605)
Q Consensus 190 v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs--~~~~~m~ 239 (1605)
.+|..-+ .+|-..+..+-||+|++.|.+-|-|--|+.|.-+ .+++||=
T Consensus 481 ~~y~r~~--k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 481 RKYSRVG--KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred cEEEEee--eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 9987666 4455788899999999999999999999999444 4555543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=111.00 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=113.2
Q ss_pred eEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecC---CcEEeeccCCCce-----------EEEeCCCccccc
Q 000378 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQS-----------FVLHSPEKKMES 108 (1605)
Q Consensus 43 ~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D---~tI~~wd~~~~q~-----------~v~~sp~~~~~~ 108 (1605)
+|.++|..++.....+....++.+.+||| ||..|+..+.+ ..|++||+++++. ...|||||+.++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 58899988776666678888999999999 88788776644 4699999987532 578999999988
Q ss_pred c--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEec-Cc--eEEEE
Q 000378 109 I--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAY 183 (1605)
Q Consensus 109 ~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~-dg--~IR~w 183 (1605)
. +.++.. ++|+|+ ..+.... .+..+.. -+.+.+|+||+..|+..+. +| .|-.|
T Consensus 259 ~~~~~~g~~-------~Iy~~d----~~~~~~~-~lt~~~~----------~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 259 FVLSKDGNP-------EIYVMD----LASRQLS-RVTNHPA----------IDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred EEEccCCCc-------eEEEEE----CCCCCeE-EcccCCC----------CcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 4 334433 567777 4443322 2333333 4677899999998776664 33 56677
Q ss_pred ecccceEEEEEeeccccccccceeEeecCCceEEEE-ecCCC--eEEeeecCCCC
Q 000378 184 NIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFV-GDRRG--TLLAWDVSIER 235 (1605)
Q Consensus 184 ~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~-G~~dg--tl~~W~vs~~~ 235 (1605)
|+.++.+. .+.. ........+|+|||++|+. ..++| .|.+||+.+..
T Consensus 317 d~~~g~~~-~lt~----~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 317 NVNGGRAE-RVTF----VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ECCCCCEE-Eeec----CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 88888865 3332 1122345689999999984 44444 47778876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=110.59 Aligned_cols=208 Identities=20% Similarity=0.253 Sum_probs=122.8
Q ss_pred cccccccccCCCCCCCCCce-eEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE-ecC
Q 000378 7 QHLDLRHVGRGDHKPLQPHE-AAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI-LED 83 (1605)
Q Consensus 7 ~~~~l~~~g~~~~~~~~v~~-~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~-~~D 83 (1605)
+.+-+..+..+. .+|+ ++|+|||+++.+ +-|..|.++|..|++.+..+..+.....+|+|| ||..++++ -.+
T Consensus 25 t~~~~~~i~~~~----~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~ 99 (369)
T PF02239_consen 25 TNKVVARIPTGG----APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEP 99 (369)
T ss_dssp T-SEEEEEE-ST----TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEET
T ss_pred CCeEEEEEcCCC----CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCC
Confidence 334455552233 3555 789999998888 778899999999999999999999999999999 77555555 579
Q ss_pred CcEEeeccCCCce---------------------------------------------------------------EEEe
Q 000378 84 CTIRSCDFDTEQS---------------------------------------------------------------FVLH 100 (1605)
Q Consensus 84 ~tI~~wd~~~~q~---------------------------------------------------------------~v~~ 100 (1605)
++|.++|..|-+. -..+
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~ 179 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF 179 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc
Confidence 9999999877311 2445
Q ss_pred CCCccccccc--cCcee---------EeccC-----C--Cc---------ceEEeccc-----------------cccce
Q 000378 101 SPEKKMESIS--VDTEV---------HLALT-----P--LQ---------PVVFFGFH-----------------RRMSV 136 (1605)
Q Consensus 101 sp~~~~~~~s--~d~~i---------h~a~t-----~--~~---------l~vw~~~~-----------------~~~s~ 136 (1605)
+|+||+.-+. .+..| ..++. | .+ =+||---| ...+.
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 5666654220 00111 01110 0 00 12342111 12223
Q ss_pred eEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEE----ecCceEEEEecccceEEEEEeeccccccccceeEeecC
Q 000378 137 TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA----YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP 212 (1605)
Q Consensus 137 ~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a----~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P 212 (1605)
++|.+++..+. | .-++-||+++.|++. ..+++|-++|.+|.++..++...+- .++--+.|+|
T Consensus 260 kvv~~I~~~G~----------g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~---~~~~h~ef~~ 325 (369)
T PF02239_consen 260 KVVKTIPTQGG----------G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG---KRVVHMEFNP 325 (369)
T ss_dssp SEEEEEE-SSS----------S---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE-T
T ss_pred eEEEEEECCCC----------c-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC---CcEeccEECC
Confidence 33333333333 3 456669999999999 6669999999999988767764111 1266889999
Q ss_pred Cce--EEEEecCCCeEEeeecCC
Q 000378 213 TLE--WLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 213 ~g~--~l~~G~~dgtl~~W~vs~ 233 (1605)
||+ |+-+++.+|.|.++|..+
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTT
T ss_pred CCCEEEEEEecCCCEEEEEECCC
Confidence 999 555888888999999764
|
... |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-08 Score=111.07 Aligned_cols=209 Identities=19% Similarity=0.250 Sum_probs=153.3
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCc---ceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCce
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQ---ALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHA 76 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~g---allA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~ 76 (1605)
|++++-++.-.+ .++- |-+-|+||=- -|+|+ --|-.|.|+|...|+---+ -+|-..|-++.|||-.-=+
T Consensus 129 WDtnTlQ~a~~F~me~~-----VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~v 203 (397)
T KOG4283|consen 129 WDTNTLQEAVDFKMEGK-----VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWV 203 (397)
T ss_pred eecccceeeEEeecCce-----eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeE
Confidence 888774444444 3433 5666666643 37888 5677899999999998888 8999999999999966689
Q ss_pred EEEEecCCcEEeeccCC----------Cce-----------------EEEeCCCccccc-cccCceeEeccCCCcceEEe
Q 000378 77 VVAILEDCTIRSCDFDT----------EQS-----------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFF 128 (1605)
Q Consensus 77 laa~~~D~tI~~wd~~~----------~q~-----------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~ 128 (1605)
|+.|+.|++||+||+-- +++ ..+++.||+.++ ...|..+ |. |+
T Consensus 204 LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~-------r~--wn 274 (397)
T KOG4283|consen 204 LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI-------RV--WN 274 (397)
T ss_pred EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce-------EE--ee
Confidence 99999999999999742 121 677788888887 3666677 66 99
Q ss_pred ccccccceeEEeeeecCCCCcccccccCCCceEeeee----cCCCeEEEEecCceEEEEecccceEEEEEeecccccccc
Q 000378 129 GFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH----PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204 (1605)
Q Consensus 129 ~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~----P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g 204 (1605)
--.++++-..-|.+--..- .++++| -.+-+...-+ |+.+-+|++-.|..+--|.+ |+--
T Consensus 275 ~~~G~ntl~~~g~~~~n~~------------~~~~~~~~~~~s~vfv~~p~-~~~lall~~~sgs~ir~l~~----h~k~ 337 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQT------------TSFAVHIQSMDSDVFVLFPN-DGSLALLNLLEGSFVRRLST----HLKR 337 (397)
T ss_pred cccCccccccccccccccc------------ccceEEEeecccceEEEEec-CCeEEEEEccCceEEEeeec----ccce
Confidence 6555555544443221111 123333 2233444444 47777899988888855666 8888
Q ss_pred ceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeec
Q 000378 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMD 242 (1605)
Q Consensus 205 ~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~ 242 (1605)
+.|-+|.|+-|-.++|+.|+.|.+|-...--|+-||..
T Consensus 338 i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~~pt~~~d~ 375 (397)
T KOG4283|consen 338 INCAAYRPDFEQCFTGDMNGNIYMWSPALKSPTKISDL 375 (397)
T ss_pred eeEEeecCchhhhhccccCCccccccccccCCcccccc
Confidence 88999999999999999999999999998888888863
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-07 Score=108.99 Aligned_cols=202 Identities=14% Similarity=0.207 Sum_probs=135.7
Q ss_pred CCceeEeCCCcceeee--e---------cCceEEEEeccCCceeeeccCCcc--------eeeeeecCCCC-ceEEEEec
Q 000378 23 QPHEAAFHPNQALIAV--A---------IGTYIIEFDTLTGSRIASIDINSP--------VVRMAYSPTSG-HAVVAILE 82 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~--a---------~g~~I~l~d~~tG~~~~~l~~~~~--------v~~lA~SP~~g-~~laa~~~ 82 (1605)
.||.+ +||||+.|.+ + -+-.|.+||+.|++.+..+.++.. -.-+++|| || +..++--.
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~ 125 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFS 125 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCC
Confidence 67775 9999999998 4 358999999999999988776443 34899999 66 45555545
Q ss_pred -CCcEEeeccCCCce-------------------EEEeCCCccccccccC--ceeEeccCCC----------cc------
Q 000378 83 -DCTIRSCDFDTEQS-------------------FVLHSPEKKMESISVD--TEVHLALTPL----------QP------ 124 (1605)
Q Consensus 83 -D~tI~~wd~~~~q~-------------------~v~~sp~~~~~~~s~d--~~ih~a~t~~----------~l------ 124 (1605)
|.+|-.+|+.+++. ...|..||++..+..| ++.+.+-+|. ||
T Consensus 126 p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d 205 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS 205 (352)
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence 89999999999644 5567788888874333 4443322221 12
Q ss_pred --eEEeccccccceeEEeeeecCCCCcccc----cccC-----CC--ceEeeeecCCCeEEEEe----------cCceEE
Q 000378 125 --VVFFGFHRRMSVTVVGTVEGGRAPTKIK----TDLK-----KP--IVNLACHPRLPVLYVAY----------ADGLIR 181 (1605)
Q Consensus 125 --~vw~~~~~~~s~~~vgt~eG~~~~~~ik----~d~k-----kp--V~~LA~~P~~~vL~~a~----------~dg~IR 181 (1605)
++|--++ .++.++ .+.|....+..+ ++-. +| +.-+|+|||+..||++. ..+.|-
T Consensus 206 g~~~~vs~e--G~V~~i-d~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 206 GRLVWPTYT--GKIFQI-DLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CcEEEEecC--CeEEEE-ecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 2222222 223333 122221111111 1111 11 12499999999999963 235799
Q ss_pred EEecccceEEEEEeeccccccccceeEeecCCce-EEEEec-CCCeEEeeecCCC
Q 000378 182 AYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE-WLFVGD-RRGTLLAWDVSIE 234 (1605)
Q Consensus 182 ~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~-~l~~G~-~dgtl~~W~vs~~ 234 (1605)
++|..|++++.++.. -..+-.++|+|||+ +|++-. .+++|.+-|+.+-
T Consensus 283 ViD~~t~kvi~~i~v-----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEECCCCeEEEEEeC-----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 999999999987765 23677899999999 999766 6899999998754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=123.61 Aligned_cols=182 Identities=19% Similarity=0.243 Sum_probs=128.6
Q ss_pred CcceeeeecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC-c-----eEEEeC--
Q 000378 32 NQALIAVAIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-Q-----SFVLHS-- 101 (1605)
Q Consensus 32 ~gallA~a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q-----~~v~~s-- 101 (1605)
+|.|++++.=+.|++||+.+..+... .+...-|.+|.=+--.|++||||..||+||++|.-.- + .+..|+
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 46666667778999999997777766 5555566777555336899999999999999998662 1 122332
Q ss_pred -----------CCccccccccCceeEeccCCCcceEEecccccc--ceeEEeeeecCCCCcccccccCCCceEeeeecCC
Q 000378 102 -----------PEKKMESISVDTEVHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1605)
Q Consensus 102 -----------p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~--s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~ 168 (1605)
+.++..++|.||.| +. |. -|| ..+++ ++--|.+ ....+++|.-|++.
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I-------~~--~D---lR~~~~e~~~-~iv~~~~-------yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDI-------QL--LD---LRMSSKETFL-TIVAHWE-------YGSALTALTVHEHA 1316 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeE-------EE--Ee---cccCcccccc-eeeeccc-------cCccceeeeeccCC
Confidence 55677778999999 76 66 233 22333 3333321 01137899999999
Q ss_pred CeEEEEecCceEEEEecccceEEEEEeecccc---ccccceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 169 PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTI---KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 169 ~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~---~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
|++|+|++ +.|++|++.--..- ++.-++.. +...+.|++|||.--.|++|++|.++.++-...++
T Consensus 1317 piiAsGs~-q~ikIy~~~G~~l~-~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1317 PIIASGSA-QLIKIYSLSGEQLN-IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CeeeecCc-ceEEEEecChhhhc-ccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99999998 99999998643322 44332222 22345799999999999999999999999876443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-07 Score=120.81 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=132.9
Q ss_pred CCceeEeCCCcceeee--ecCceEEEEeccCCceeeeccCC-----------------cceeeeeecCCCCceEEEEecC
Q 000378 23 QPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDIN-----------------SPVVRMAYSPTSGHAVVAILED 83 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~-----------------~~v~~lA~SP~~g~~laa~~~D 83 (1605)
+|++++|.+++..|.+ ..+..|..+|..+|......+-+ ..-..|+|+|.+|.+.|+...+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 6999999999886655 55678999998877644332110 1124699999888999999999
Q ss_pred CcEEeeccCCCce--------------------------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccc
Q 000378 84 CTIRSCDFDTEQS--------------------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMS 135 (1605)
Q Consensus 84 ~tI~~wd~~~~q~--------------------------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s 135 (1605)
..|+.||..+... .++++|||+++-+ +.+.+| ++|+ ..+
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I---------rv~D----~~t 771 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI---------RALD----LKT 771 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE---------EEEE----CCC
Confidence 9999999876422 3666677664332 333455 4466 333
Q ss_pred eeEEeeeecCCC-------------CcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccc---
Q 000378 136 VTVVGTVEGGRA-------------PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNT--- 199 (1605)
Q Consensus 136 ~~~vgt~eG~~~-------------~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~--- 199 (1605)
+... ++.|+.. -......+..| .++|++|+|.+.++-+.++.||.||..++.+. |+-+...
T Consensus 772 g~~~-~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~ 848 (1057)
T PLN02919 772 GGSR-LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGF 848 (1057)
T ss_pred CcEE-EEEecccccCcccccccCCCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCC
Confidence 2211 1111100 00011234456 48999999998888888999999999999887 6554221
Q ss_pred -------cccccceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 200 -------IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 200 -------~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
-++..-..++++|+|+++++-+.+++|++||+.+.+
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 012234578999999988888899999999998654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-07 Score=112.61 Aligned_cols=217 Identities=17% Similarity=0.237 Sum_probs=149.8
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-----
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----- 96 (1605)
.|+-+||-|||--|.++.|..+-+||+..|..+.+ .+|-+.|.-+|||- ||...|+|+.|..|-+|.-.-|-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceeeecc
Confidence 68999999999999999999999999999999999 89999999999999 999999999999999999866522
Q ss_pred -----EEEeCCCccccccccCceeEeccCCCcceEEeccccc----------------cceeEE------e--eeecCCC
Q 000378 97 -----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR----------------MSVTVV------G--TVEGGRA 147 (1605)
Q Consensus 97 -----~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~----------------~s~~~v------g--t~eG~~~ 147 (1605)
|.-|+|=...++.++=.+. -+ |-...|. +.++-+ | ++.....
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdF-------gl--WS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDF-------GL--WSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhc-------cc--cChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 6666665555543221111 22 2211100 111111 0 1111122
Q ss_pred Cccccccc----CCCceEeeeecCC-----CeEEEEecCceEEEEecccceEEE---EEeeccccccccceeEeecCCce
Q 000378 148 PTKIKTDL----KKPIVNLACHPRL-----PVLYVAYADGLIRAYNIHTYAVHY---TLQLDNTIKLLGAGAFAFHPTLE 215 (1605)
Q Consensus 148 ~~~ik~d~----kkpV~~LA~~P~~-----~vL~~a~~dg~IR~w~i~t~~v~~---tL~~~~~~~~~g~~a~Af~P~g~ 215 (1605)
--|+|-|- ..||++++|+|.+ -.++|+.|..+.-+|-+. |+.+- +|.-| --|+.|-|+||
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~Fd-------P~CisYf~NGE 235 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFD-------PCCISYFTNGE 235 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCC-------chhheeccCCc
Confidence 22333332 4699999999754 478888888887665432 22221 11111 12788899999
Q ss_pred EEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCc
Q 000378 216 WLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPP 260 (1605)
Q Consensus 216 ~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~ 260 (1605)
.+.+|+.|+-|+++--. -...|--|..--|---|.+.||...
T Consensus 236 y~LiGGsdk~L~~fTR~---GvrLGTvg~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRD---GVRLGTVGEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred EEEEccCCCceEEEeec---CeEEeeccccceeEEEEEEccCCce
Confidence 99999999999998543 2334555667789999999999765
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=116.71 Aligned_cols=185 Identities=19% Similarity=0.179 Sum_probs=147.4
Q ss_pred CCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-
Q 000378 20 KPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1605)
Q Consensus 20 ~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~- 96 (1605)
...+|.|+.|| .++.+ +-+..|++||...-..+.. .+|-..|.-|-|+=+|- .||+++..|-|-+-.+.|.+.
T Consensus 81 ~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 81 NAFCVACASQS---LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred hHHHHhhhhcc---eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccc
Confidence 45678888888 67776 9999999999884444444 89999999999998564 789999999999999988532
Q ss_pred ------------EEEeCCCccccc--cccCceeEeccCCCcceEEeccccccceeEEee-eecCCCCcccccccCCCceE
Q 000378 97 ------------FVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPTKIKTDLKKPIVN 161 (1605)
Q Consensus 97 ------------~v~~sp~~~~~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~d~kkpV~~ 161 (1605)
.+-|||-+|.+- +|.+|+| .+ |. +....+.-. .+-|++ |-+.
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~asd~G~V-------tl--wD----v~g~sp~~~~~~~HsA----------P~~g 213 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV-------TL--WD----VQGMSPIFHASEAHSA----------PCRG 213 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEeeccCCeE-------EE--Ee----ccCCCcccchhhhccC----------CcCc
Confidence 678999999876 4777999 45 77 554444433 688999 9999
Q ss_pred eeeecCCCeEEE-EecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC-CCCC
Q 000378 162 LACHPRLPVLYV-AYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS-IERP 236 (1605)
Q Consensus 162 LA~~P~~~vL~~-a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs-~~~~ 236 (1605)
+.|+|..+.|++ -+-|.-|-+||+..-+-.=+|.- .....++||+|+|-+|+.|...|.|..+|+- +..|
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ceecCCccceEEEecccceEEEeecccccccceeee-----cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 999998887653 33488888999987666545544 4577899999999999999999999999997 5544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.4e-08 Score=114.06 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=142.0
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccC--CcceeeeeecCCCCceEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDI--NSPVVRMAYSPTSGHAVV 78 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~--~~~v~~lA~SP~~g~~la 78 (1605)
|++..-+-.|-+ +|.. +|-|+-..=+--+||+ +.|..|++-...|+.+...+.| +..|.-|-|||-..|.|.
T Consensus 106 wdl~~kl~hr~lkdh~s----tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~ 181 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQS----TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS 181 (673)
T ss_pred hhhHHHHHhhhccCCcc----eeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence 888765666777 8888 9999999999999999 9999999999999999888444 566678999998889999
Q ss_pred EEecCCcEEeeccCCCce-------------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeee
Q 000378 79 AILEDCTIRSCDFDTEQS-------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~q~-------------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
..+.||+|++||+.-..+ -|.|||-.+.+-+ +=|..| .++. -.+..-+.++.
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki---------~~yD----~~s~~s~~~l~ 248 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI---------NIYD----IRSQASTDRLT 248 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE---------EEee----cccccccceee
Confidence 999999999999976433 6788888877654 444444 4455 22222222221
Q ss_pred cCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEeccc-ceEEEEEeeccccccccceeEeecCCc
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT-YAVHYTLQLDNTIKLLGAGAFAFHPTL 214 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t-~~v~~tL~~~~~~~~~g~~a~Af~P~g 214 (1605)
- . -|...|||+|+|-.|+.|...|-|-+||+-. -++.-++.. |...|.++||-|--
T Consensus 249 y-~----------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa----h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 Y-S----------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA----HDASVTRVAFQPSP 305 (673)
T ss_pred e-c----------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee----cccceeEEEeeecc
Confidence 1 1 2899999999999999999999999999975 455557777 99999999996654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=116.03 Aligned_cols=201 Identities=18% Similarity=0.266 Sum_probs=158.6
Q ss_pred CceeEeCCCcceeee-ecCceEEEEeccC--Cceeee-ccCCc--ceeeeeecCCCCceEEEEecCCcEEeeccCCCce-
Q 000378 24 PHEAAFHPNQALIAV-AIGTYIIEFDTLT--GSRIAS-IDINS--PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1605)
Q Consensus 24 v~~~aF~P~gallA~-a~g~~I~l~d~~t--G~~~~~-l~~~~--~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~- 96 (1605)
..|.+|||+++.+|+ ..++.|.+|-... +....- +-|+- .|..++||+ +|..|.+|.+.|..-+|...|+..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kq 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQ 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCCcc
Confidence 689999999999999 6667799998765 333333 55555 999999999 888999999999999999999522
Q ss_pred ----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccc-ccccCCCceEeee
Q 000378 97 ----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDLKKPIVNLAC 164 (1605)
Q Consensus 97 ----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i-k~d~kkpV~~LA~ 164 (1605)
++..|||+..-+ .-.|..||+=.-+ +-..--|+.|=..+|+= |+-..+=.+.+.|
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-------------dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-------------DLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-------------chhhhhhccCccCCCccccccccccceeEEE
Confidence 888999999998 5889999764332 11111156666666433 8888888999999
Q ss_pred ecCCCeEEEEecCceEEEEecccceEEEEEee------ccc-cccccceeEeecCCceEEEEecC----------CCeEE
Q 000378 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL------DNT-IKLLGAGAFAFHPTLEWLFVGDR----------RGTLL 227 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~------~~~-~~~~g~~a~Af~P~g~~l~~G~~----------dgtl~ 227 (1605)
.||-.-++=-..-|.|-+||..+-.-+|.++. |-. .+.+|+.+.+++=.|.|++|+.. .-.||
T Consensus 354 dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 354 DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 99988888888899999999999998898876 222 56779999999999999998863 34689
Q ss_pred eeecCCCCCee
Q 000378 228 AWDVSIERPSM 238 (1605)
Q Consensus 228 ~W~vs~~~~~m 238 (1605)
+|+-.+...+-
T Consensus 434 FW~~n~~~kt~ 444 (792)
T KOG1963|consen 434 FWQYNPNSKTF 444 (792)
T ss_pred EEEEcCCccee
Confidence 99987655543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=116.22 Aligned_cols=193 Identities=14% Similarity=0.099 Sum_probs=135.8
Q ss_pred cCCCCCCCCCceeEeCCCcc---eeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEe
Q 000378 15 GRGDHKPLQPHEAAFHPNQA---LIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~ga---llA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~ 88 (1605)
||.. +|+|+.|=|+.. .+.+ +.|.+|++|...-.-.+-+ +.+ ....-+|++. ...++.+.+.|++|++
T Consensus 52 GH~a----~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a-~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 52 GHVA----RVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVA-RSSVMTCKAADGTVSV 125 (764)
T ss_pred CCcc----ceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEe-eeeEEEeeccCceEEE
Confidence 8888 999999999999 4555 9999999999663333333 333 3444455553 2244444579999999
Q ss_pred eccCCCc----------------eEEEeCCCcccccc---ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCc
Q 000378 89 CDFDTEQ----------------SFVLHSPEKKMESI---SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1605)
Q Consensus 89 wd~~~~q----------------~~v~~sp~~~~~~~---s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~ 149 (1605)
||..... +|++..|+-++... +++.-| .-++.- ..+...|--++||.+
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v----------~~~s~~-~d~f~~v~el~GH~D-- 192 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVV----------DLYSSS-ADSFARVAELEGHTD-- 192 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEE----------EEeccC-CcceeEEEEeeccch--
Confidence 9994422 17888884444433 444444 233333 346778878999999
Q ss_pred ccccccCCCceEeeee-c--CCCeEEEEecCceEEEEecccce-------------------------EEEEEeecccc-
Q 000378 150 KIKTDLKKPIVNLACH-P--RLPVLYVAYADGLIRAYNIHTYA-------------------------VHYTLQLDNTI- 200 (1605)
Q Consensus 150 ~ik~d~kkpV~~LA~~-P--~~~vL~~a~~dg~IR~w~i~t~~-------------------------v~~tL~~~~~~- 200 (1605)
=|++|||. + +.-+|||+|-|..||+|+|.=+. +.|.+..+.-+
T Consensus 193 --------WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 193 --------WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred --------hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 99999999 3 34699999999999999986443 11211111111
Q ss_pred -ccccceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 201 -KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 201 -~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
|-.=|.++-+||++..|-+.|.|.|+.+|-=.++
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~ 299 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN 299 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCc
Confidence 6677889999999999999999999999976655
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-08 Score=110.78 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=85.9
Q ss_pred ceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEeCCCcccccccc
Q 000378 34 ALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISV 111 (1605)
Q Consensus 34 allA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~ 111 (1605)
.+||+ +.=..|++.|+.++.-.-. .+|+..+..|-|-|++-+.|++++.|-+||+||+.+
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~------------------ 167 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT------------------ 167 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC------------------
Confidence 46777 6667999999998887777 999999999999999999999999999999999933
Q ss_pred CceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecc
Q 000378 112 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 186 (1605)
Q Consensus 112 d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~ 186 (1605)
|.-| . +.|-+||||+ -|-++-||+||-.++|++-|.+|++|++.
T Consensus 168 ~~Cv---------~------------VfGG~egHrd----------eVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 168 DVCV---------A------------VFGGVEGHRD----------EVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred CeEE---------E------------EecccccccC----------cEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 2112 1 2256788888 88888888888888888888888888887
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=115.82 Aligned_cols=192 Identities=18% Similarity=0.236 Sum_probs=142.4
Q ss_pred CCCCceeEeCCCcceeee--ecCceEEEEeccCCcee-----ee--ccCCcceeeeeec--CCCCceEEEEecCCcEEee
Q 000378 21 PLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRI-----AS--IDINSPVVRMAYS--PTSGHAVVAILEDCTIRSC 89 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~-----~~--l~~~~~v~~lA~S--P~~g~~laa~~~D~tI~~w 89 (1605)
+-.|.|++|+|...-|.+ ..++.|.+||...++.. +. --|..+|+.+-+- +.+ +-+++++.||.|.+|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-CceEEEecCCcEeee
Confidence 447999999998776666 77899999999988873 22 5577888999887 433 779999999999999
Q ss_pred ccCC-Cce-----------------------EEEeCCCccc--cccccCceeEeccCCCcceEEeccccccceeE-----
Q 000378 90 DFDT-EQS-----------------------FVLHSPEKKM--ESISVDTEVHLALTPLQPVVFFGFHRRMSVTV----- 138 (1605)
Q Consensus 90 d~~~-~q~-----------------------~v~~sp~~~~--~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~----- 138 (1605)
+++. .++ ++.|.|..-. +-++.+|.| ..|-.+-++...
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v-----------~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV-----------YKGCRKGYTPAPEVSYK 389 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE-----------EEEeccCCccccccccc
Confidence 8866 221 5555543322 223444555 222222222222
Q ss_pred -EeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecc-cceEEEEEeeccccccccceeEeecCCceE
Q 000378 139 -VGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH-TYAVHYTLQLDNTIKLLGAGAFAFHPTLEW 216 (1605)
Q Consensus 139 -vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~-t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~ 216 (1605)
+.+.-.|-. ||+++-++|=++-++..+-|-+||+|.-. ...++|-+.. +...+.++|+||+=--
T Consensus 390 ~~~~~~~h~g----------~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~----~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 390 GHSTFITHIG----------PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS----SPDYVTDVAWSPTRPA 455 (555)
T ss_pred ccccccccCc----------ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh----ccceeeeeEEcCcCce
Confidence 333444455 99999999998887777779999999999 8999988888 7777999999999999
Q ss_pred EE-EecCCCeEEeeecC--CCCCee
Q 000378 217 LF-VGDRRGTLLAWDVS--IERPSM 238 (1605)
Q Consensus 217 l~-~G~~dgtl~~W~vs--~~~~~m 238 (1605)
+| +++.||+|-+||+- .++|..
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcc
Confidence 99 99999999999986 666643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7e-08 Score=117.44 Aligned_cols=197 Identities=17% Similarity=0.187 Sum_probs=151.1
Q ss_pred CCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeec-CCCC-ceEEEEecCCcEEeeccCCC---
Q 000378 22 LQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYS-PTSG-HAVVAILEDCTIRSCDFDTE--- 94 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~S-P~~g-~~laa~~~D~tI~~wd~~~~--- 94 (1605)
..++|++-||||++||+ ..+.+|+++|...=+.+-. -.|.+-|..|.|| |.-+ ..||+++.|--||.+|+.-+
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 47999999999999999 7888999999764444444 6789999999999 6434 89999999999999998653
Q ss_pred -ce---------EEEeCCCc---cccccccCcee---------------------------EeccCC-Ccce--------
Q 000378 95 -QS---------FVLHSPEK---KMESISVDTEV---------------------------HLALTP-LQPV-------- 125 (1605)
Q Consensus 95 -q~---------~v~~sp~~---~~~~~s~d~~i---------------------------h~a~t~-~~l~-------- 125 (1605)
|+ +|-|--.| +||.-+.|..| -|++-| .+++
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence 33 44444333 33322222111 233333 2221
Q ss_pred --EEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccc
Q 000378 126 --VFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL 203 (1605)
Q Consensus 126 --vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~ 203 (1605)
||+ -.+++.+.+|.|-++ ++-...-|-.-|.|-.||+.+.|.++-+||..+|+-..+..+ |.-
T Consensus 620 irif~----i~sgKq~k~FKgs~~-------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G----HsE 684 (1080)
T KOG1408|consen 620 IRIFD----IESGKQVKSFKGSRD-------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG----HSE 684 (1080)
T ss_pred eEEEe----ccccceeeeeccccc-------CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC----cch
Confidence 244 557777777777655 222344466779999999999999999999999999999999 999
Q ss_pred cceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 204 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 204 g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
-|..+-|.||-++|.+-+-||-|-+|+++-
T Consensus 685 ~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 685 AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred heeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999996
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=110.63 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=110.0
Q ss_pred CCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcce-eeeeecCCCCceEEEEecCCcEEeeccCCC----
Q 000378 22 LQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPV-VRMAYSPTSGHAVVAILEDCTIRSCDFDTE---- 94 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v-~~lA~SP~~g~~laa~~~D~tI~~wd~~~~---- 94 (1605)
..|..++|+.||+.|.+ +.+..|-+||+.+-+.+.. .+-++-- .++|-|+ +|..+|.|+.-|.|-++|.++.
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccC
Confidence 35899999999998877 5666999999998877777 4444332 7899999 8889999999999999997773
Q ss_pred --ce------------EEEeCCCcccccc-ccC--ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCC
Q 000378 95 --QS------------FVLHSPEKKMESI-SVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK 157 (1605)
Q Consensus 95 --q~------------~v~~sp~~~~~~~-s~d--~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kk 157 (1605)
++ ++.||||.+++|+ |+- ..+ || .+ +-|-++--++---. |++ -
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal-------rL--VH----vPS~TVFsNfP~~n--~~v-----g 483 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL-------RL--VH----VPSCTVFSNFPTSN--TKV-----G 483 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce-------EE--Ee----ccceeeeccCCCCC--Ccc-----c
Confidence 11 9999999999996 444 455 55 33 33333332221100 000 1
Q ss_pred CceEeeeecCCCeEEEEecCceEEEEecccc
Q 000378 158 PIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~ 188 (1605)
-|+||||||.+..||+|-++|.+++|-++.|
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 4899999999999999999999999999865
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-06 Score=97.29 Aligned_cols=231 Identities=16% Similarity=0.211 Sum_probs=138.2
Q ss_pred CCceeEeCCCcceeee-ec----CceEEEEeccCC--ce--eeecc-CCcceeeeeecCCCCceEEEEecCCcEEeeccC
Q 000378 23 QPHEAAFHPNQALIAV-AI----GTYIIEFDTLTG--SR--IASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~----g~~I~l~d~~tG--~~--~~~l~-~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
.|..++|||++++|-+ .. +..|.-|+.... .. +.... .+..-+.++++|++..+++|--.+++|-.++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 7899999999999988 33 458888887663 33 33333 677778999999444555555569999999998
Q ss_pred CC-ce-------------------------EEEeCCCcccccc---ccCceeEeccCCCcceEEeccccccceeEEeeee
Q 000378 93 TE-QS-------------------------FVLHSPEKKMESI---SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 93 ~~-q~-------------------------~v~~sp~~~~~~~---s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
+. .. ++.++|||+.+-+ ..| .| ++|.--.....-+.+..+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D-~v---------~~~~~~~~~~~l~~~~~~- 186 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD-RV---------YVYDIDDDTGKLTPVDSI- 186 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT-EE---------EEEEE-TTS-TEEEEEEE-
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC-EE---------EEEEEeCCCceEEEeecc-
Confidence 72 11 6777788776653 233 33 233300000001111111
Q ss_pred cCCCCcccccccCCCceEeeeecCCCeEEEEec-CceEEEEecc--cceEEEEEeecccc----c-cccceeEeecCCce
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIH--TYAVHYTLQLDNTI----K-LLGAGAFAFHPTLE 215 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~-dg~IR~w~i~--t~~v~~tL~~~~~~----~-~~g~~a~Af~P~g~ 215 (1605)
+.....-=+.++||||++++|+..+ ++.|-.|++. +|... .++.=+++ + ......+++||||+
T Consensus 187 --------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 187 --------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT-EIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp --------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE-EEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred --------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee-EEEEeeeccccccccCCceeEEEecCCC
Confidence 1111223488999999999999864 6789999999 66444 33322222 1 12577899999999
Q ss_pred EEEEec-CCCeEEeeecCC--CCCeeeee---ccceeEEEEEEeeCCCCCcccccccccCCcccccc
Q 000378 216 WLFVGD-RRGTLLAWDVSI--ERPSMIGM---DGSLQVWKTRVIINPNRPPMQANFFEPASIESIDI 276 (1605)
Q Consensus 216 ~l~~G~-~dgtl~~W~vs~--~~~~m~g~---~g~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~ 276 (1605)
+|+|.. .+++|.+++++. .+.+.++. .|. |=.-+.++|+.--+-..-..+-.|..+++
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 999776 567999999964 35666655 122 22345556665544433334444554443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=103.82 Aligned_cols=180 Identities=9% Similarity=-0.048 Sum_probs=117.2
Q ss_pred CCceeEeCCCcce-eee-ec---CceEEEEeccCCceeeeccCCcceeeeeecCCCCc-eEEEEecC--CcEEeeccCCC
Q 000378 23 QPHEAAFHPNQAL-IAV-AI---GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGH-AVVAILED--CTIRSCDFDTE 94 (1605)
Q Consensus 23 ~v~~~aF~P~gal-lA~-a~---g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~-~laa~~~D--~tI~~wd~~~~ 94 (1605)
.....+|||||+. ++. +. +..|.++|..||...........+...+||| ||. ++.+...+ .-|+++|+++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 3457899999984 664 43 3579999999999988876666677788999 664 44444434 56888898775
Q ss_pred ce-----------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEe-eeecCCCCcccccccCCCceEe
Q 000378 95 QS-----------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG-TVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 95 q~-----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vg-t~eG~~~~~~ik~d~kkpV~~L 162 (1605)
+. .-.|||||+.+...+|..- ..++++.+ ..++.+-. |.+|.. +.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g-----~~~Iy~~d----l~~g~~~rlt~~g~~--------------~~ 324 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG-----YPNIFMKK----LNSGSVEQVVFHGKN--------------NS 324 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCC-----CceEEEEE----CCCCCeEeCccCCCc--------------Cc
Confidence 32 4568899999985444221 11454454 33322211 222221 23
Q ss_pred eeecCCCeEEEEecC-------c--eEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEeeecC
Q 000378 163 ACHPRLPVLYVAYAD-------G--LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 163 A~~P~~~vL~~a~~d-------g--~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
++||||..|+-.+.+ + -|-++|+.++.+. .|+.. ......+|+|||++|+ +..++|+-.||-++
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 899999987665543 2 5777788899876 55552 1233689999999887 55555665555554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-07 Score=96.03 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=78.0
Q ss_pred EEEeCCCccccccc---cCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEE
Q 000378 97 FVLHSPEKKMESIS---VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1605)
Q Consensus 97 ~v~~sp~~~~~~~s---~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~ 173 (1605)
.+++||+|+.+++. .+..| ++ |+ .. .+.+-++. +.++..+.|||+|..|+.
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v-------~l--yd----~~-~~~i~~~~------------~~~~n~i~wsP~G~~l~~ 117 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKV-------TL--YD----VK-GKKIFSFG------------TQPRNTISWSPDGRFLVL 117 (194)
T ss_pred EEEECcCCCEEEEEEccCCccc-------EE--Ec----Cc-ccEeEeec------------CCCceEEEECCCCCEEEE
Confidence 89999999998743 23344 44 88 32 44443432 237889999999999999
Q ss_pred EecC---ceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecC------CCeEEeeecC
Q 000378 174 AYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR------RGTLLAWDVS 232 (1605)
Q Consensus 174 a~~d---g~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~------dgtl~~W~vs 232 (1605)
|+-+ |.|++||+.+.+.+.+... ..+..++|+|||+.+++.+. |..++||+..
T Consensus 118 ~g~~n~~G~l~~wd~~~~~~i~~~~~------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 118 AGFGNLNGDLEFWDVRKKKKISTFEH------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEccCCCcEEEEEECCCCEEeecccc------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 8754 5699999999999866543 45789999999999996653 6777888764
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=111.53 Aligned_cols=170 Identities=18% Similarity=0.219 Sum_probs=128.7
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCC-ceEEEEecCCcEEeec
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSG-HAVVAILEDCTIRSCD 90 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g-~~laa~~~D~tI~~wd 90 (1605)
||.+ .|+|+.|+.||-+||+ |.|.+|.+||...-+.+-+ ++|.+-|-++-|=|-.+ ..|++|..|.-||+.|
T Consensus 48 GH~G----CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 48 GHTG----CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred cccc----eecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 8999 9999999999999999 9999999999997777666 89999999999999766 7788999999999999
Q ss_pred cCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC-C
Q 000378 91 FDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-P 169 (1605)
Q Consensus 91 ~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~-~ 169 (1605)
++.- +.+++=|=+-+|.+. |- -|.+ -|..||--|.+ -
T Consensus 124 l~~~---------------~~~~~d~~~~~~~~~--~~---------------cht~----------rVKria~~p~~Ph 161 (758)
T KOG1310|consen 124 LDSS---------------KEGGMDHGMEETTRC--WS---------------CHTD----------RVKRIATAPNGPH 161 (758)
T ss_pred cccc---------------cccccccCccchhhh--hh---------------hhhh----------hhhheecCCCCCc
Confidence 9541 112223444455666 54 3555 77788888999 5
Q ss_pred eEEEEecCceEEEEecccceEEEEEeec-------cccccccceeEeecCCceE-EEEecCCCeEEeeec
Q 000378 170 VLYVAYADGLIRAYNIHTYAVHYTLQLD-------NTIKLLGAGAFAFHPTLEW-LFVGDRRGTLLAWDV 231 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~v~~tL~~~-------~~~~~~g~~a~Af~P~g~~-l~~G~~dgtl~~W~v 231 (1605)
+.-||++||+||=|||---.+- .-.+| --..+.-+-++..+|+--. |+||+.|--.+++|.
T Consensus 162 tfwsasEDGtirQyDiREph~c-~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREPHVC-NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eEEEecCCcceeeecccCCccC-CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 7889999999999999652221 11110 0012245668888887655 449999988888883
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=116.68 Aligned_cols=218 Identities=17% Similarity=0.223 Sum_probs=151.4
Q ss_pred CCceeEeCCCcce----eee-ecCceEEEEeccC---Cceeee----ccCCcceeeeeecCCCCceEEEEecCCcEEeec
Q 000378 23 QPHEAAFHPNQAL----IAV-AIGTYIIEFDTLT---GSRIAS----IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1605)
Q Consensus 23 ~v~~~aF~P~gal----lA~-a~g~~I~l~d~~t---G~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd 90 (1605)
+-+.++|.+.|-. ||- ..|+.|.+||+.- +..+.+ -.|..+|..|-|+|..+.+||+|..||.|.+||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 5689999999988 666 8899999999985 444444 578999999999998889999999999999999
Q ss_pred cCCC-ce-------------EEEeCCC-ccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccc
Q 000378 91 FDTE-QS-------------FVLHSPE-KKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1605)
Q Consensus 91 ~~~~-q~-------------~v~~sp~-~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d 154 (1605)
+..- ++ |++++-. -.+++ +++++++ +||+ ...-+.|=.+.-|...
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~---------~iWD----lr~~~pii~ls~~~~~------ 206 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA---------VIWD----LRKKKPIIKLSDTPGR------ 206 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc---------eecc----ccCCCcccccccCCCc------
Confidence 9883 22 4444422 22333 3333333 6788 3222333223222220
Q ss_pred cCCCceEeeeecCCCe-EEEEecCc---eEEEEecccceE-EEEEeeccccccccceeEeecCCc-eEEEEecCCCeEEe
Q 000378 155 LKKPIVNLACHPRLPV-LYVAYADG---LIRAYNIHTYAV-HYTLQLDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLA 228 (1605)
Q Consensus 155 ~kkpV~~LA~~P~~~v-L~~a~~dg---~IR~w~i~t~~v-~~tL~~~~~~~~~g~~a~Af~P~g-~~l~~G~~dgtl~~ 228 (1605)
.-+-.|++||+.-. |++|+.|- .|.+||+-.-.. .=+|++ |--|+-++.+.|.. +.|++..+|++|..
T Consensus 207 --~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~----H~~GilslsWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 207 --MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG----HQRGILSLSWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred --cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc----cccceeeeccCCCCchhhhcccCCCCeeE
Confidence 24668999998753 55555543 699999765433 226677 99999999999998 66679999999999
Q ss_pred eecCCCCCeeeeeccceeEEEEEEeeCCCCC-cccccccc
Q 000378 229 WDVSIERPSMIGMDGSLQVWKTRVIINPNRP-PMQANFFE 267 (1605)
Q Consensus 229 W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~-~~~a~~~~ 267 (1605)
|..-+ =-..|=-++=.=|-.-|--+|..| -|.+..|+
T Consensus 281 wN~~t--gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 281 WNPNT--GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred ecCCC--ceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 99765 222222122234899999999988 55555554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=102.25 Aligned_cols=200 Identities=22% Similarity=0.266 Sum_probs=139.9
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEecc--------C-----C-c---eeeeccCCcceeeeeecCCCCce
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTL--------T-----G-S---RIASIDINSPVVRMAYSPTSGHA 76 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~--------t-----G-~---~~~~l~~~~~v~~lA~SP~~g~~ 76 (1605)
+|++ .|+++-|+|+|-+||+ +.|+.|.+|-.. | - + +....+|..-+.-+|+|| |+..
T Consensus 63 ~H~~----aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~ 137 (434)
T KOG1009|consen 63 RHTR----AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNF 137 (434)
T ss_pred CCcc----eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCce
Confidence 6788 9999999999999999 899999999765 3 0 0 111156888899999999 9999
Q ss_pred EEEEecCCcEEeeccCCCce------------EEEeCCCccccc-cccCc--e---------eE-------eccC-----
Q 000378 77 VVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDT--E---------VH-------LALT----- 120 (1605)
Q Consensus 77 laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~--~---------ih-------~a~t----- 120 (1605)
+++++-|.++++||+..++. -|+..|.++.++ -|.|. + +| ++..
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 99999999999999998755 677777777777 36664 1 10 0100
Q ss_pred ----------CCcceEEecccccccee--------EEeeeecCCCC----ccc--ccccCCCceEee----------ee-
Q 000378 121 ----------PLQPVVFFGFHRRMSVT--------VVGTVEGGRAP----TKI--KTDLKKPIVNLA----------CH- 165 (1605)
Q Consensus 121 ----------~~~l~vw~~~~~~~s~~--------~vgt~eG~~~~----~~i--k~d~kkpV~~LA----------~~- 165 (1605)
.++. || ||.+.+ +.|-++-|+.. |-+ ..|||+|+..|= |+
T Consensus 218 ~~s~rLfhDeTlks--FF---rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 218 GKSTRLFHDETLKS--FF---RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred cceeeeeecCchhh--hh---hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 0122 22 232222 22223333332 111 127887765542 22
Q ss_pred -----------------cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEe
Q 000378 166 -----------------PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 228 (1605)
Q Consensus 166 -----------------P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~ 228 (1605)
|-.=|.|+|. ...+-+||.|+-++.|-+-. ||-..+.-+||++||-.|++-|-||-..+
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEee---eeeeeecceeecCCCcEEEEeccCCceEE
Confidence 3333556666 44566999999999987765 79999999999999999999999998765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.2e-06 Score=108.19 Aligned_cols=224 Identities=19% Similarity=0.179 Sum_probs=137.5
Q ss_pred CCCceeEeCCC-cceeee-ecCceEEEEeccCCceeeeccC-C--------------cceeeeeecCCCCceEEEEecCC
Q 000378 22 LQPHEAAFHPN-QALIAV-AIGTYIIEFDTLTGSRIASIDI-N--------------SPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 22 ~~v~~~aF~P~-gallA~-a~g~~I~l~d~~tG~~~~~l~~-~--------------~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
..|..++++++ |.+.++ +.+..|..||. +|..+..++- + ..-+.||++|.++.+.++-..+.
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 45667999985 777777 78889999995 5776655332 1 12378999995444667777788
Q ss_pred cEEeeccCCCce----------------------------EEEeCCCcccccc--ccCceeEeccCCCcceEEecccccc
Q 000378 85 TIRSCDFDTEQS----------------------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRM 134 (1605)
Q Consensus 85 tI~~wd~~~~q~----------------------------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~ 134 (1605)
.|+.+|+.++.. .|+++|++..+=+ +.+.+| |+|+ ..
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I---------~v~d----~~ 713 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI---------WEYN----IS 713 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE---------EEEE----CC
Confidence 999999865321 4666664333322 333444 6677 44
Q ss_pred ceeEEeeeecCCCC------cccccccCCCceEeeeecCCCeEEEEe-cCceEEEEecccceEEEEEe-ecccc------
Q 000378 135 SVTVVGTVEGGRAP------TKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHYTLQ-LDNTI------ 200 (1605)
Q Consensus 135 s~~~vgt~eG~~~~------~~ik~d~kkpV~~LA~~P~~~vL~~a~-~dg~IR~w~i~t~~v~~tL~-~~~~~------ 200 (1605)
++.+. ++.|.... +.....+.. ..++|++||+..||++. .++.||.||+.++.+. ++. +|++.
T Consensus 714 ~g~v~-~~~G~G~~~~~~g~~~~~~~~~~-P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 714 DGVTR-VFSGDGYERNLNGSSGTSTSFAQ-PSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFK 790 (1057)
T ss_pred CCeEE-EEecCCccccCCCCccccccccC-ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCccccc
Confidence 33322 33322110 011223443 46899999999777664 5699999999988754 222 22211
Q ss_pred -----------ccccceeEeecCCceEEEEecCCCeEEeeecCCCCCe-eeeeccceeEEEEEEeeCCCCCccccccccc
Q 000378 201 -----------KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS-MIGMDGSLQVWKTRVIINPNRPPMQANFFEP 268 (1605)
Q Consensus 201 -----------~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~-m~g~~g~~~~w~~rv~~~~~~~~~~a~~~~~ 268 (1605)
++..-..++|.|+|.+.++-..+++|+.||..+..-+ ++| .|.. -.++.....+.|.+|
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~--------G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKA--------GFKDGKALKAQLSEP 861 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCc--------CCCCCcccccccCCc
Confidence 1112348899999997777779999999998754433 333 2210 012334567777777
Q ss_pred CCc
Q 000378 269 ASI 271 (1605)
Q Consensus 269 a~~ 271 (1605)
.+|
T Consensus 862 ~GI 864 (1057)
T PLN02919 862 AGL 864 (1057)
T ss_pred eEE
Confidence 765
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.1e-07 Score=103.38 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=121.3
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEE
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v 98 (1605)
.++.+|||++=--+|+ ..|-.|++||... .+.. -..---|..|||-|-++..||.||..| |-+|-.+
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s------ 170 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDS------ 170 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcC------
Confidence 5788999998877888 8889999999875 4433 233456899999998889999999877 6677552
Q ss_pred EeCCCccccccccCceeEecc-----CCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEE
Q 000378 99 LHSPEKKMESISVDTEVHLAL-----TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1605)
Q Consensus 99 ~~sp~~~~~~~s~d~~ih~a~-----t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~ 173 (1605)
.+.|++. +..++=|. --.|| . ||++|+|-+||..|++
T Consensus 171 --------------~tln~~r~~~~~s~~~~qvl-------------~~pgh-~----------pVtsmqwn~dgt~l~t 212 (445)
T KOG2139|consen 171 --------------RTLNANRNIRMMSTHHLQVL-------------QDPGH-N----------PVTSMQWNEDGTILVT 212 (445)
T ss_pred --------------cccccccccccccccchhhe-------------eCCCC-c----------eeeEEEEcCCCCEEee
Confidence 1222111 11121011 23455 4 8999999999999987
Q ss_pred Ee-cCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 174 AY-ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 174 a~-~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
|| .|..|++||+.+++-+.-... .+.|+.-+-|||||.|||...-|++.++||..
T Consensus 213 AS~gsssi~iWdpdtg~~~pL~~~----glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 213 ASFGSSSIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred cccCcceEEEEcCCCCCccccccc----CCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 75 688999999999998854435 68899999999999999999999999999876
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=97.52 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=144.7
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCceeee-ccCCc------ceeeeeecC-CCCceEEEEecCCcEEeeccCCC
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINS------PVVRMAYSP-TSGHAVVAILEDCTIRSCDFDTE 94 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~------~v~~lA~SP-~~g~~laa~~~D~tI~~wd~~~~ 94 (1605)
.+.|+-|+||+.-||+=.+.+|.+|+...+++|.. +..+. .-.+=+||| -+|+.+ +...|.|+..||+-|-
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEccch
Confidence 58899999999999997799999999999999744 33332 334567888 677665 5578999999999873
Q ss_pred -ce------------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc
Q 000378 95 -QS------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI 159 (1605)
Q Consensus 95 -q~------------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV 159 (1605)
+. .+-|+|.++.+-+ ..|+-| |. |. -|++.-+|.+++||+- =|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyv-------ri--WD---~R~tk~pv~el~~HsH----------Wv 261 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYV-------RI--WD---TRKTKFPVQELPGHSH----------WV 261 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccE-------EE--Ee---ccCCCccccccCCCce----------EE
Confidence 21 6789999997763 555888 76 88 5778888989999999 99
Q ss_pred eEeeeecC-CCeEEEEecCceEEEEecccce------------------------------EEEEEeeccccccccceeE
Q 000378 160 VNLACHPR-LPVLYVAYADGLIRAYNIHTYA------------------------------VHYTLQLDNTIKLLGAGAF 208 (1605)
Q Consensus 160 ~~LA~~P~-~~vL~~a~~dg~IR~w~i~t~~------------------------------v~~tL~~~~~~~~~g~~a~ 208 (1605)
+++-|+|- .+++.+|+.|--|-+|..+.-. .. |... |-..|.|+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~-tyde----hEDSVY~~ 336 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLE-TYDE----HEDSVYAL 336 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccc-cccc----cccceEEE
Confidence 99999974 4677788889999999865432 22 3444 77799999
Q ss_pred eecCCceEEE-EecCCCeEEeeecC
Q 000378 209 AFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 209 Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
|+|----|+| +=|-||++.+=.|+
T Consensus 337 aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeccCCCeeEEEeccCceEEeecCC
Confidence 9999999999 88999999887666
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-07 Score=116.78 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=136.2
Q ss_pred cCCCCCCCCCceeEeCCCcc-eeee-ecCceEEEEeccCCceeee----ccCCcceeeeeecCCCCceEEEEecCCcEEe
Q 000378 15 GRGDHKPLQPHEAAFHPNQA-LIAV-AIGTYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~ga-llA~-a~g~~I~l~d~~tG~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~ 88 (1605)
-|.+ .|.++-|.|.|. +||+ +-+..|.+||... -..+. .....-|..|+|+-.--|+||+++.++++-+
T Consensus 114 ~h~G----~V~gLDfN~~q~nlLASGa~~geI~iWDlnn-~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 114 KHTG----PVLGLDFNPFQGNLLASGADDGEILIWDLNK-PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI 188 (1049)
T ss_pred ccCC----ceeeeeccccCCceeeccCCCCcEEEeccCC-cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence 4777 899999999999 9999 8899999999875 22222 3355678999999878899999999999999
Q ss_pred eccCCCce--------------EEEeCCCccccc--cccCceeEeccCC-CcceEEeccccccceeEEeeeecCCCCccc
Q 000378 89 CDFDTEQS--------------FVLHSPEKKMES--ISVDTEVHLALTP-LQPVVFFGFHRRMSVTVVGTVEGGRAPTKI 151 (1605)
Q Consensus 89 wd~~~~q~--------------~v~~sp~~~~~~--~s~d~~ih~a~t~-~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i 151 (1605)
||+.-.+. .++++|+.-+-- .|.|..- | +++ |. -|..-.++.+++||.-
T Consensus 189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~-----Pviql--WD---lR~assP~k~~~~H~~---- 254 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA-----PVIQL--WD---LRFASSPLKILEGHQR---- 254 (1049)
T ss_pred ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC-----ceeEe--ec---ccccCCchhhhccccc----
Confidence 99987533 688889886544 3555322 1 266 77 3556666767788877
Q ss_pred ccccCCCceEeeeecCC-CeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEE-EecCCCeEEee
Q 000378 152 KTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAW 229 (1605)
Q Consensus 152 k~d~kkpV~~LA~~P~~-~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W 229 (1605)
-|-+|...|.+ .+|.|..-|+.|-.||..||+++|.|-- ......-+-|.|--=-+| +.+-||+|.+.
T Consensus 255 ------GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~----~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 255 ------GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA----QGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred ------ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC----CCcceeeeeecCCCcchhhhheeccceeee
Confidence 99999988655 8999999999999999999999987755 233333344444333222 44444444443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-07 Score=113.72 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=152.6
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|+..+..-|... ||.+ .+.-+|-+-+-.++|+ |.|+-|.+|-.-+|..+++ -+|...|++|||||-. +
T Consensus 217 wS~et~~~lAs~rGhs~----ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----s 287 (1113)
T KOG0644|consen 217 WSMETARCLASCRGHSG----DITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----S 287 (1113)
T ss_pred eeccchhhhccCCCCcc----ccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----c
Confidence 777777888888 9999 8999999999999999 9999999999999999999 8999999999999932 7
Q ss_pred EecCCcEEeeccCCC------ce------------------------------------EEEeCCCcccccc-ccCce-e
Q 000378 80 ILEDCTIRSCDFDTE------QS------------------------------------FVLHSPEKKMESI-SVDTE-V 115 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~------q~------------------------------------~v~~sp~~~~~~~-s~d~~-i 115 (1605)
.+.|||++.||..-+ ++ +.|+.-.+.+... |+|.. +
T Consensus 288 ss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 288 SSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSI 367 (1113)
T ss_pred CCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccc
Confidence 899999999998721 00 2333333333332 33422 1
Q ss_pred E-eccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEE-EEecCceEEEEecccceEEEE
Q 000378 116 H-LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADGLIRAYNIHTYAVHYT 193 (1605)
Q Consensus 116 h-~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~-~a~~dg~IR~w~i~t~~v~~t 193 (1605)
| .|-.-.++-||| ..++..+-.+-||.+ ++--|-+||..|..+ +|.-||.+-+|||--|.+.=.
T Consensus 368 ~~~ar~~~~~~vwn----l~~g~l~H~l~ghsd----------~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWN----LYTGQLLHNLMGHSD----------EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred ceeeeeeeEeeeee----cccchhhhhhccccc----------ceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 1 122226788899 888877778999999 999999999988765 455588888999999987622
Q ss_pred EeeccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 194 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 194 L~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
-.+ + |..-+ -=+||+||..++.-++-|-|.+--
T Consensus 434 y~~-g--h~kl~-d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 434 YFI-G--HGKLV-DGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred eec-c--cceee-ccccCCCCceEecCCCCCceEEec
Confidence 111 1 32222 237999999999999999988753
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=112.02 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=132.5
Q ss_pred EeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC---C----ce------------EEEeCCCccc
Q 000378 47 FDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT---E----QS------------FVLHSPEKKM 106 (1605)
Q Consensus 47 ~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~---~----q~------------~v~~sp~~~~ 106 (1605)
|. .+|..+.. .+|...|.++|-|+..+...|+|+.|||||+||..- + +- +|..-+.+.+
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 66 56888887 889999999999987889999999999999999865 1 11 3334455666
Q ss_pred cc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCC--ceEeeee--cCCCeEEEEecCceEE
Q 000378 107 ES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP--IVNLACH--PRLPVLYVAYADGLIR 181 (1605)
Q Consensus 107 ~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkp--V~~LA~~--P~~~vL~~a~~dg~IR 181 (1605)
.| .+.||.|| |+..-.-...+.+++ .-+|+++.|-+ |...||. -++++|+.+-.-+-|-
T Consensus 1113 ~Av~t~DG~v~----------~~~id~~~~~~~~~~------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1113 FAVSTKDGSVR----------VLRIDHYNVSKRVAT------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred EEEEcCCCeEE----------EEEccccccccceee------eeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 66 36677773 331111111111111 11333333333 2333443 4555777777777777
Q ss_pred EEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCC
Q 000378 182 AYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRP 259 (1605)
Q Consensus 182 ~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~ 259 (1605)
.||+-+-....+++.+ .+-+.|.+++-+|.++|++.|..+|.|.+||+--..|... ..--.+.|-.||.++|-.|
T Consensus 1177 ~~D~r~~~~~w~lk~~--~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s-w~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQ--LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS-WEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred EecchhhhhHHhhhcC--ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec-ccCcccCCcceEEeeccCC
Confidence 9999999988887763 3678899999999999999999999999999987666543 2233446777887777655
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=93.17 Aligned_cols=199 Identities=21% Similarity=0.218 Sum_probs=136.7
Q ss_pred CCCCceeEeCCCccee-ee--ecCceEEEEeccCCceeeeccCCccee---eeeecCCCCceEEEEec-----CCcEEee
Q 000378 21 PLQPHEAAFHPNQALI-AV--AIGTYIIEFDTLTGSRIASIDINSPVV---RMAYSPTSGHAVVAILE-----DCTIRSC 89 (1605)
Q Consensus 21 ~~~v~~~aF~P~gall-A~--a~g~~I~l~d~~tG~~~~~l~~~~~v~---~lA~SP~~g~~laa~~~-----D~tI~~w 89 (1605)
|.+.|+++.||+.... |. ==|+...+||..||..+..+.....=+ .-+||| ||..|.+.=. .|.|-.|
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEE
Confidence 6688999999955544 33 458899999999999998765444333 679999 8888877544 4689999
Q ss_pred ccCC-C-ce-----------EEEeCCCccccccccC-ceeE-------eccCCCcc--eEEeccccccceeEEeeeecCC
Q 000378 90 DFDT-E-QS-----------FVLHSPEKKMESISVD-TEVH-------LALTPLQP--VVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 90 d~~~-~-q~-----------~v~~sp~~~~~~~s~d-~~ih-------~a~t~~~l--~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
|... - +. -++..|||+++.+..+ -+.| |.+-..+| ++-+ ..++..++..+=-.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld----~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD----ARSGALLEQVELPP 158 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEe----cCCCceeeeeecCc
Confidence 9983 2 22 5778899988875443 2333 55555553 3333 45666665422200
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccc------------ccceeEeecCCc
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL------------LGAGAFAFHPTL 214 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~------------~g~~a~Af~P~g 214 (1605)
.+++-.|+-||..+||.|++..=++|--+ .+--.+++...+..+++ .+++|+||+++|
T Consensus 159 ------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~----~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 159 ------DLHQLSIRHLAVDGDGTVAFAMQYQGDPG----DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred ------cccccceeeEEecCCCcEEEEEecCCCCC----ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC
Confidence 23444999999999999999988777542 11223333443332322 489999999999
Q ss_pred eEEEEec-CCCeEEeeecCCC
Q 000378 215 EWLFVGD-RRGTLLAWDVSIE 234 (1605)
Q Consensus 215 ~~l~~G~-~dgtl~~W~vs~~ 234 (1605)
.++++.+ +.|++.+||..+-
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CEEEEECCCCCEEEEEECCCC
Confidence 9998666 9999999988754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-06 Score=107.48 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=147.0
Q ss_pred cccccccccccccCCCCCCCCCceeEeCC--Ccceeee-ecCceEEEEeccCCc----eeee-------ccCCcce--ee
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHP--NQALIAV-AIGTYIIEFDTLTGS----RIAS-------IDINSPV--VR 66 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P--~gallA~-a~g~~I~l~d~~tG~----~~~~-------l~~~~~v--~~ 66 (1605)
|+-.....++...-|..++..|..+.|=- |-++|.+ +.|..|++|+----. ++.+ +-.++.= .=
T Consensus 1091 wd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v 1170 (1387)
T KOG1517|consen 1091 WDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLV 1170 (1387)
T ss_pred EecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCee
Confidence 43333455666644555777898888864 4456666 999999999753221 1211 1111111 23
Q ss_pred eeecCCCCceEEEEecCCcEEeeccCCCceE--------------EEeCCCccccc-cccCceeEeccCCCcceEEeccc
Q 000378 67 MAYSPTSGHAVVAILEDCTIRSCDFDTEQSF--------------VLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFH 131 (1605)
Q Consensus 67 lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~--------------v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~ 131 (1605)
+.|--+.||.+++|. =-+||+||.+.|+.+ -++.+.|.+++ +-.||.| |. ++
T Consensus 1171 ~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv-------Rv--yD--- 1237 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSV-------RV--YD--- 1237 (1387)
T ss_pred eehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCce-------EE--ee---
Confidence 455577888888775 779999999998651 13446677777 6889999 77 65
Q ss_pred ccccee--EEeeeecCCCCcccccccCCCceEeeeecCCCe-EEEEecCceEEEEeccc-ceEEEEEeecccccccc-ce
Q 000378 132 RRMSVT--VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV-LYVAYADGLIRAYNIHT-YAVHYTLQLDNTIKLLG-AG 206 (1605)
Q Consensus 132 ~~~s~~--~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~v-L~~a~~dg~IR~w~i~t-~~v~~tL~~~~~~~~~g-~~ 206 (1605)
||+... .|-+-.-|.+ +.||.+|-+-++|=. |+|||.||-|++||+-. ..+. +++++-+-..++ ..
T Consensus 1238 ~R~a~~ds~v~~~R~h~~--------~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1238 RRMAPPDSLVCVYREHND--------VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALT 1308 (1387)
T ss_pred cccCCccccceeecccCC--------cccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-cceeeeccccCccce
Confidence 666544 4545666776 234999999987776 99999999999999998 4444 566643333343 89
Q ss_pred eEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 207 AFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 207 a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
|+.-|++..++++|+. +.|++|+++-+.
T Consensus 1309 al~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred eeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 9999999999999999 999999998654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-06 Score=96.85 Aligned_cols=178 Identities=19% Similarity=0.276 Sum_probs=120.8
Q ss_pred cccccccccCCCCCCCCCceeEeCCCcceeee---ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEec
Q 000378 7 QHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV---AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILE 82 (1605)
Q Consensus 7 ~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~---a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~ 82 (1605)
+-+.|-++...-..|.++-++++|+.+.+||- ---..|.+||+.+=+-... -.|..++..||||| +|+.||.+++
T Consensus 115 ~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASe 193 (391)
T KOG2110|consen 115 DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASE 193 (391)
T ss_pred cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEecc
Confidence 33445555222234677888888998889998 2345799999987666655 68999999999999 9999999999
Q ss_pred CCc-EEeeccCCCce--------------EEEeCCCccccccccC-ceeEec---c---------CCCcceEEecccccc
Q 000378 83 DCT-IRSCDFDTEQS--------------FVLHSPEKKMESISVD-TEVHLA---L---------TPLQPVVFFGFHRRM 134 (1605)
Q Consensus 83 D~t-I~~wd~~~~q~--------------~v~~sp~~~~~~~s~d-~~ih~a---~---------t~~~l~vw~~~~~~~ 134 (1605)
-|| ||.+.+-++|. +++||||+.+++.+++ .|||+= . |+... |+ ...
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~--~~---~~~ 268 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTS--WF---GKV 268 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCc--cc---chh
Confidence 998 58998888654 8999999999996444 899972 1 22233 33 222
Q ss_pred ceeEEeeeecCCCCccccc---------------ccCCCceEeeeecCCCeEEEEecCceEEEEecc--cceEEEEEe
Q 000378 135 SVTVVGTVEGGRAPTKIKT---------------DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH--TYAVHYTLQ 195 (1605)
Q Consensus 135 s~~~vgt~eG~~~~~~ik~---------------d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~--t~~v~~tL~ 195 (1605)
+...+. --|++|+. .--|-+..|.=++..|.+.+|+.||..-.|++- +|-...++.
T Consensus 269 sk~~~s-----ylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 269 SKAATS-----YLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred hhhhhh-----hcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence 111111 01111111 111245555555799999999999999888763 354443554
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=96.67 Aligned_cols=171 Identities=15% Similarity=0.064 Sum_probs=104.3
Q ss_pred ceEEEEeccCCceeeeccCCcceeeeeecCCCCce--EEEEec-C--CcEEeeccCCCce-----------EEEeCCCcc
Q 000378 42 TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHA--VVAILE-D--CTIRSCDFDTEQS-----------FVLHSPEKK 105 (1605)
Q Consensus 42 ~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~--laa~~~-D--~tI~~wd~~~~q~-----------~v~~sp~~~ 105 (1605)
+.|-+.|...+.....+.....+.+=+||| ||.. ++-.+. + ..|++.|+++++. ...+||||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 478899988777766666666777889999 6643 322333 3 3588889988532 567999999
Q ss_pred ccccccC--ceeEeccCCCcceEEeccccccc---eeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEe-cCce
Q 000378 106 MESISVD--TEVHLALTPLQPVVFFGFHRRMS---VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGL 179 (1605)
Q Consensus 106 ~~~~s~d--~~ih~a~t~~~l~vw~~~~~~~s---~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~-~dg~ 179 (1605)
.++..++ +.-+ +-...|+ ..+ +.......++.. -+.+.+|||||..|+..+ .+|.
T Consensus 244 ~Laf~s~~~g~~d-----i~~~~~~----~~~g~~g~~~~lt~~~~~----------~~~~p~wSPDG~~Laf~s~~~g~ 304 (428)
T PRK01029 244 LLAFISDRYGNPD-----LFIQSFS----LETGAIGKPRRLLNEAFG----------TQGNPSFSPDGTRLVFVSNKDGR 304 (428)
T ss_pred EEEEEECCCCCcc-----eeEEEee----cccCCCCcceEeecCCCC----------CcCCeEECCCCCEEEEEECCCCC
Confidence 9985443 2220 0111133 111 111111112111 346789999999766555 5787
Q ss_pred EEEEecc----cceEEEEEeeccccccccceeEeecCCceEEE-EecCCC--eEEeeecCCCCCe
Q 000378 180 IRAYNIH----TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRG--TLLAWDVSIERPS 237 (1605)
Q Consensus 180 IR~w~i~----t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dg--tl~~W~vs~~~~~ 237 (1605)
.++|.+. ++.+. .|+. +...+.+.+|||||++|+ +..++| .|.+||+......
T Consensus 305 ~~ly~~~~~~~g~~~~-~lt~----~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 305 PRIYIMQIDPEGQSPR-LLTK----KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ceEEEEECcccccceE-Eecc----CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 7777653 22222 3433 334667899999999998 555444 6888888755443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.2e-06 Score=97.83 Aligned_cols=206 Identities=17% Similarity=0.121 Sum_probs=147.3
Q ss_pred cccc-ccccccccc----cCCCCCCCCCceeEeCCC--cceeeeecCceEEEEeccCCceeeecc---CCcceeeeeecC
Q 000378 2 EWAT-VQHLDLRHV----GRGDHKPLQPHEAAFHPN--QALIAVAIGTYIIEFDTLTGSRIASID---INSPVVRMAYSP 71 (1605)
Q Consensus 2 ~W~~-~~~~~l~~~----g~~~~~~~~v~~~aF~P~--gallA~a~g~~I~l~d~~tG~~~~~l~---~~~~v~~lA~SP 71 (1605)
=|++ .|..+.-.+ .|++ +|.++-|+|. .+++++|-|++|++=|..++--.-++. ...-..++-||-
T Consensus 214 ~Wn~~~~~~d~d~v~~f~~hs~----~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 214 LWNFGTQEKDKDGVYLFTPHSG----PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA 289 (498)
T ss_pred EEecCCCCCccCceEEeccCCc----cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence 4777 344555554 5888 9999999995 578888999999999987664443322 345557777887
Q ss_pred CCCceEEEEecCCcEEeeccCCCce-------------EEEeCCCccccc--cccCceeEeccCCCcceEEeccccccce
Q 000378 72 TSGHAVVAILEDCTIRSCDFDTEQS-------------FVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSV 136 (1605)
Q Consensus 72 ~~g~~laa~~~D~tI~~wd~~~~q~-------------~v~~sp~~~~~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~ 136 (1605)
.++.+|+..-.+ -...||+.+... +|+++|--...= .|-|.|. |. |+ .+
T Consensus 290 e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~-------kI--WD------~R 353 (498)
T KOG4328|consen 290 ESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA-------KI--WD------LR 353 (498)
T ss_pred CCccEEEeeccc-ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce-------ee--ee------hh
Confidence 677777777776 999999988422 566666544332 3556555 55 65 11
Q ss_pred eEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEec----ccceEEEEEeecccc--ccccceeEee
Q 000378 137 TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI----HTYAVHYTLQLDNTI--KLLGAGAFAF 210 (1605)
Q Consensus 137 ~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i----~t~~v~~tL~~~~~~--~~~g~~a~Af 210 (1605)
.+.+-+.|+.=-.+|+++|.+.-|||++..|++-+.|..||+||. +...++.|++-++.- |+....| +|
T Consensus 354 ----~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA-~W 428 (498)
T KOG4328|consen 354 ----QLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKA-AW 428 (498)
T ss_pred ----hhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhh-ee
Confidence 133444366666788999999999999999999999999999999 778888777765543 4444443 68
Q ss_pred cCCceEEEEecCCCeEEeeecC
Q 000378 211 HPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 211 ~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
+|+--++++|-.-..|-+.|-.
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred CCCccEEEEeccCcceeEEcCC
Confidence 8888888888877777776654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=105.00 Aligned_cols=191 Identities=15% Similarity=0.174 Sum_probs=138.1
Q ss_pred CCceeEeCC-Ccceeee-ecCceEEEEeccCCceee--------eccCCcceeeeeecCCCCceEEEEecCCcEEeeccC
Q 000378 23 QPHEAAFHP-NQALIAV-AIGTYIIEFDTLTGSRIA--------SIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 23 ~v~~~aF~P-~gallA~-a~g~~I~l~d~~tG~~~~--------~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
.|--+.|.| |-..||| ..|..|++|-.-++-.-. ...|+..+++|-|.|=-.++|++.++|.||++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 566677777 5567888 667789999876653221 167899999999999888999999999999999998
Q ss_pred CCce------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEe---eeecCCCCcccccccC
Q 000378 93 TEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG---TVEGGRAPTKIKTDLK 156 (1605)
Q Consensus 93 ~~q~------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vg---t~eG~~~~~~ik~d~k 156 (1605)
+... .+|+|||||.+| .+.|+++ |- .+ -|+..++|. +.-|.|.
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~-------rV--y~---Prs~e~pv~Eg~gpvgtRg--------- 767 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL-------RV--YE---PRSREQPVYEGKGPVGTRG--------- 767 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceE-------EE--eC---CCCCCCccccCCCCccCcc---------
Confidence 7421 899999999999 6999999 42 44 233334442 1222333
Q ss_pred CCceEeeeecCCCeEEEE----ecCceEEEEecccc--eEEEEEeecccccccccee-EeecCCceEEE-EecCCCeEEe
Q 000378 157 KPIVNLACHPRLPVLYVA----YADGLIRAYNIHTY--AVHYTLQLDNTIKLLGAGA-FAFHPTLEWLF-VGDRRGTLLA 228 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a----~~dg~IR~w~i~t~--~v~~tL~~~~~~~~~g~~a-~Af~P~g~~l~-~G~~dgtl~~ 228 (1605)
.-+-|-=||..+.+. +.+++|-+||.|+- .++||+-+|-. .-.- =-|-+|--.|| +|--|.++.+
T Consensus 768 ---ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva----ps~LvP~YD~Ds~~lfltGKGD~~v~~ 840 (1012)
T KOG1445|consen 768 ---ARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA----PSPLVPHYDYDSNVLFLTGKGDRFVNM 840 (1012)
T ss_pred ---eeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc----CccccccccCCCceEEEecCCCceEEE
Confidence 123333366666554 34688999999975 58999888521 1111 13678888898 8989999999
Q ss_pred eecCCCCCeeeee
Q 000378 229 WDVSIERPSMIGM 241 (1605)
Q Consensus 229 W~vs~~~~~m~g~ 241 (1605)
+.+-.|.|-+.-.
T Consensus 841 yEv~~esPy~lpl 853 (1012)
T KOG1445|consen 841 YEVIYESPYLLPL 853 (1012)
T ss_pred EEecCCCceeeec
Confidence 9999999987655
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=101.68 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=95.7
Q ss_pred ceeeeeecCCCCceEEEEecCCcEEeeccCCCce------------EEEeCCCcccccc-ccCceeEeccCCCcceEEec
Q 000378 63 PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFG 129 (1605)
Q Consensus 63 ~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~ 129 (1605)
+++..|||| ||..||..++|+.+|++|++++.. ||.+|||||+|.+ +.|.=| -||-
T Consensus 292 ~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV---------tVwS- 360 (636)
T KOG2394|consen 292 SINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV---------TVWS- 360 (636)
T ss_pred cccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE---------EEEE-
Confidence 567889999 999999999999999999999643 9999999999994 777666 3488
Q ss_pred cccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccccccee--
Q 000378 130 FHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGA-- 207 (1605)
Q Consensus 130 ~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a-- 207 (1605)
...+++|.-.+||+. =|..+||-| |.-+.+..-.+=+. +++-- -+..|-.+.+.|+++
T Consensus 361 ---f~erRVVARGqGHkS----------WVs~VaFDp-----ytt~~ee~~~~~~~-~~~~~-~~~~~~~~r~~~~~S~~ 420 (636)
T KOG2394|consen 361 ---FEERRVVARGQGHKS----------WVSVVAFDP-----YTTSTEEWNNFSGM-DSTFS-DVAHDFEIRANGTGSAE 420 (636)
T ss_pred ---eccceEEEecccccc----------ceeeEeecc-----cccccccccccccc-ccccc-chhcccccccCCCCCcC
Confidence 778999999999999 999999988 43333321000000 00000 111133445555542
Q ss_pred -----EeecCCceEEE--EecCCCeEEeeecCC
Q 000378 208 -----FAFHPTLEWLF--VGDRRGTLLAWDVSI 233 (1605)
Q Consensus 208 -----~Af~P~g~~l~--~G~~dgtl~~W~vs~ 233 (1605)
=-+.+++..-= +-+.|--|+|||+.+
T Consensus 421 ~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 421 GCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred CCcccccccccceEEEeecccccceEEEEecch
Confidence 11233432222 444899999999984
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.1e-06 Score=95.27 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=102.5
Q ss_pred cceeee-ecCceEEEEeccCC-c---eeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-CceEEEeCCCc--
Q 000378 33 QALIAV-AIGTYIIEFDTLTG-S---RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT-EQSFVLHSPEK-- 104 (1605)
Q Consensus 33 gallA~-a~g~~I~l~d~~tG-~---~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~-~q~~v~~sp~~-- 104 (1605)
=.+|.+ |+|++-++||..|| . |+..+.|...|.-+||+--+.++.|+.++||++|.+|+-. ++.-+-|-++.
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 456666 99999999999999 4 6666999999999999984449999999999999999987 44444443222
Q ss_pred -------------ccccc-ccC-ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC-
Q 000378 105 -------------KMESI-SVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL- 168 (1605)
Q Consensus 105 -------------~~~~~-s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~- 168 (1605)
..+|+ --| .+| . +-. -|+-.++|.+++||++ +|.++|.+|-+
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V-------~--iLD---iR~P~tpva~L~~H~a----------~VNgIaWaPhS~ 300 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKV-------V--ILD---IRVPCTPVARLRNHQA----------SVNGIAWAPHSS 300 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceE-------E--EEE---ecCCCcceehhhcCcc----------cccceEecCCCC
Confidence 12221 111 112 1 111 2556778888999999 99999999854
Q ss_pred CeEEEEecCceEEEEecccceE
Q 000378 169 PVLYVAYADGLIRAYNIHTYAV 190 (1605)
Q Consensus 169 ~vL~~a~~dg~IR~w~i~t~~v 190 (1605)
-.+.+|++|-++-+||+++-..
T Consensus 301 ~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 301 SHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ceeeecCCcceEEEEecccccc
Confidence 5899999999999999997554
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.1e-07 Score=109.62 Aligned_cols=210 Identities=17% Similarity=0.143 Sum_probs=152.3
Q ss_pred ccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcE
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
.++-+ ||-. +|-|++|--+|..+++ +.|+-+|+|.-.|+..+++ -+|.+-+.-||-|- +.-.+||++.|+.|
T Consensus 182 ~ikrLlgH~n----aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHRN----AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhhh----heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceE
Confidence 34444 8888 8999999999999999 9999999999999999999 99999999999997 55699999999999
Q ss_pred EeeccCCCce------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccce---------eEEeeeecC
Q 000378 87 RSCDFDTEQS------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSV---------TVVGTVEGG 145 (1605)
Q Consensus 87 ~~wd~~~~q~------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~---------~~vgt~eG~ 145 (1605)
|.|-+-++.+ +++|||=- +.|.|+|+ +-|=|+ +.-+..+ ..+..+-+.
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~-------~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTC-------RIWDAR-LEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc---cCCCCCce-------Eecccc-ccccccCCCCCCcccccceeeeecc
Confidence 9999988633 78999865 35778999 775454 1111111 111111111
Q ss_pred CCCccc---ccccCCCce---EeeeecCCCeEEEE-----------ecCceEEEEecccceEEEEEeeccccccccceeE
Q 000378 146 RAPTKI---KTDLKKPIV---NLACHPRLPVLYVA-----------YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAF 208 (1605)
Q Consensus 146 ~~~~~i---k~d~kkpV~---~LA~~P~~~vL~~a-----------~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~ 208 (1605)
..-+.- -+|+..+.. .|||+--+-..+.. =.+-.+..||.-+|...--+.+ |+..+.++
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g----hsd~~yvL 401 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG----HSDEVYVL 401 (1113)
T ss_pred ccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc----cccceeee
Confidence 111111 123333332 34555333333333 3455677899999976657777 99999999
Q ss_pred eecCCceEEE-EecCCCeEEeeecCCCCCeee
Q 000378 209 AFHPTLEWLF-VGDRRGTLLAWDVSIERPSMI 239 (1605)
Q Consensus 209 Af~P~g~~l~-~G~~dgtl~~W~vs~~~~~m~ 239 (1605)
-|||=--.++ +.++||...+||+-...|.-+
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 9999988888 999999999999987766543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-05 Score=91.62 Aligned_cols=178 Identities=19% Similarity=0.209 Sum_probs=116.6
Q ss_pred ceeee--ecCceEEEEeccCCceeeeccCCcce-eeeeecCCCCceEEEEecCCcEEeeccCCCce-----------EEE
Q 000378 34 ALIAV--AIGTYIIEFDTLTGSRIASIDINSPV-VRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----------FVL 99 (1605)
Q Consensus 34 allA~--a~g~~I~l~d~~tG~~~~~l~~~~~v-~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~-----------~v~ 99 (1605)
.++.| ..+.+|.+.|..|.+.+..+..+..+ ..++||| ||..+.+.+.|+.|..+|+.+.+. .++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 34544 67789999999999999997765555 4578999 777777788999999999999754 899
Q ss_pred eCCCcccccccc--CceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecC
Q 000378 100 HSPEKKMESISV--DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1605)
Q Consensus 100 ~sp~~~~~~~s~--d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~d 177 (1605)
+||||+++..+. ++++ .|++ ..+-+++.++..+..+-.. -+-.|.++..+|..+..+++-.|
T Consensus 85 ~s~DG~~~~v~n~~~~~v---------~v~D----~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTV---------SVID----AETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp E--TTTEEEEEEEETTEE---------EEEE----TTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETT
T ss_pred EcCCCCEEEEEecCCCce---------eEec----cccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEcc
Confidence 999999998543 4666 5688 7777888777655442211 22357788899999966655544
Q ss_pred -ceEEEEecccceEEE--EEeeccccccccceeEeecCCceEEEEec-CCCeEEeeecCC
Q 000378 178 -GLIRAYNIHTYAVHY--TLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSI 233 (1605)
Q Consensus 178 -g~IR~w~i~t~~v~~--tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dgtl~~W~vs~ 233 (1605)
+.|-+-|..+....- ++......| -+.|.|+|+.+.++. .++.|-++|..+
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~-----D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPH-----DGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEE-----EEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred CCeEEEEEeccccccceeeeccccccc-----ccccCcccceeeecccccceeEEEeecc
Confidence 777666766664442 222233334 368999999988764 777898999664
|
... |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-06 Score=104.35 Aligned_cols=173 Identities=16% Similarity=0.238 Sum_probs=145.6
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce------
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------ 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------ 96 (1605)
.|+.+.|=++-+++|||-.+++.+|| ..|.++--+.-...|.+|-|=| --=.||+++..|-.+--|+.+++.
T Consensus 172 tv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t 249 (545)
T KOG1272|consen 172 TVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRT 249 (545)
T ss_pred hhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHc
Confidence 46889999999999999999999999 6799998888889999999999 444788899999999999998643
Q ss_pred ------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC
Q 000378 97 ------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 97 ------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~ 169 (1605)
....+|-.-.+.+ -+.|+| .+ |- .++..++--+--|+. ||.++|++|.|.
T Consensus 250 ~~G~~~vm~qNP~NaVih~GhsnGtV-------Sl--WS----P~skePLvKiLcH~g----------~V~siAv~~~G~ 306 (545)
T KOG1272|consen 250 GAGRTDVMKQNPYNAVIHLGHSNGTV-------SL--WS----PNSKEPLVKILCHRG----------PVSSIAVDRGGR 306 (545)
T ss_pred cCCccchhhcCCccceEEEcCCCceE-------Ee--cC----CCCcchHHHHHhcCC----------CcceEEECCCCc
Confidence 6678899998884 566899 77 99 999888877889999 999999999999
Q ss_pred eEEEEecCceEEEEecccceEEEEEeecccccc-ccceeEeecCCceEEE-EecCCCeEEee
Q 000378 170 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL-LGAGAFAFHPTLEWLF-VGDRRGTLLAW 229 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~-~g~~a~Af~P~g~~l~-~G~~dgtl~~W 229 (1605)
.+++++.|+.+++||+-++..+-|+ +. -+++.++||-.|-.-+ .|+ -+.+|
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql~t~------~tp~~a~~ls~SqkglLA~~~G~---~v~iw 359 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQLHTY------RTPHPASNLSLSQKGLLALSYGD---HVQIW 359 (545)
T ss_pred EEeecccccceeEeeecccccccee------ecCCCccccccccccceeeecCC---eeeee
Confidence 9999999999999999998744232 33 5788999998886544 333 35555
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.9e-06 Score=100.69 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=129.3
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeecc---CCcceeeeeecCCCC----
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASID---INSPVVRMAYSPTSG---- 74 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~---~~~~v~~lA~SP~~g---- 74 (1605)
|++.| +.++-- +.. .++.|-+|.-||++||- -.|++|.+=+.+...++.+-. ...+|++++|+|.+|
T Consensus 119 WS~~q-K~V~K~-kss---~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 119 WSPEQ-KSVSKH-KSS---SRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred cChhh-hhHHhh-hhh---eeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 77777 444433 222 38899999999999999 677899999977777777744 678999999999887
Q ss_pred ceEEEEecCCcEEeeccCCC-----ce------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeee
Q 000378 75 HAVVAILEDCTIRSCDFDTE-----QS------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1605)
Q Consensus 75 ~~laa~~~D~tI~~wd~~~~-----q~------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~ 142 (1605)
++++++.+..|+-++.++-. ++ |+-|-|.|+++- +++|+..| +| .-.+-.+||+
T Consensus 194 di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~----------~f----TR~GvrLGTv 259 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS----------LF----TRDGVRLGTV 259 (1081)
T ss_pred ceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceE----------EE----eecCeEEeec
Confidence 78999999999999988763 22 999999999998 47776663 34 4456677887
Q ss_pred ecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEE
Q 000378 143 EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 143 eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~ 191 (1605)
----. =||.++.||.++..+.|-.||+|--||+...+||
T Consensus 260 g~~D~----------WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH 298 (1081)
T KOG1538|consen 260 GEQDS----------WIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVH 298 (1081)
T ss_pred cccce----------eEEEEEEccCCceEEEEEccCeeehhhhHHhHhh
Confidence 55444 7999999999999999999999999999998888
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=88.25 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=114.5
Q ss_pred CceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEE-EecCCcEEeeccCCCceEEEeC
Q 000378 24 PHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA-ILEDCTIRSCDFDTEQSFVLHS 101 (1605)
Q Consensus 24 v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa-~~~D~tI~~wd~~~~q~~v~~s 101 (1605)
|-+-|+||.+++|++ .-+..|.++... ++. ..=|++| +-..+++ --+|+-|+ +++|.
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~------sl~-----s~sa~~~-gk~~iv~eqahdgpiy---------~~~f~ 71 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLK------SLD-----SGSAEPP-GKLKIVPEQAHDGPIY---------YLAFH 71 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEeh------hhh-----ccccCCC-CCcceeeccccCCCee---------eeeee
Confidence 445688999999999 667788887643 111 1223555 3334444 45555554 34444
Q ss_pred CCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCC------CceEeeeecCCCeEEEEe
Q 000378 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK------PIVNLACHPRLPVLYVAY 175 (1605)
Q Consensus 102 p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kk------pV~~LA~~P~~~vL~~a~ 175 (1605)
|.-.+ ...||+| +-|.|+-+.+-+.-+++ -.+|.-..+ -|.++-.-|...-+..|.
T Consensus 72 -d~~Ll-s~gdG~V-------~gw~W~E~~es~~~K~l---------we~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 72 -DDFLL-SGGDGLV-------YGWEWNEEEESLATKRL---------WEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred -hhhee-eccCceE-------EEeeehhhhhhccchhh---------hhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence 22222 2455777 77777744442222211 111111111 367777778776666666
Q ss_pred cCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCC-CCeeeee
Q 000378 176 ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-RPSMIGM 241 (1605)
Q Consensus 176 ~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~-~~~m~g~ 241 (1605)
-|+.|--||+++|+.+-++.+ |..++-+++-+--.--+++|+.|||+++||..+- -.+|||-
T Consensus 134 GD~~~y~~dlE~G~i~r~~rG----HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRG----HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcC----CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence 799999999999999999999 9999999999544444679999999999999854 4678876
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=92.43 Aligned_cols=279 Identities=18% Similarity=0.193 Sum_probs=187.2
Q ss_pred ccc-cCCCCCCCCCceeEeCCCc-ceeee-ecCceEEEEeccCCceee--------eccCCcceeeeeecCCCCceEEEE
Q 000378 12 RHV-GRGDHKPLQPHEAAFHPNQ-ALIAV-AIGTYIIEFDTLTGSRIA--------SIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 12 ~~~-g~~~~~~~~v~~~aF~P~g-allA~-a~g~~I~l~d~~tG~~~~--------~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
..+ ||.. +|--++|.|.- ..||+ |.|++|++|+.--+-... ..+|.-.|--|+|-|+--.+|++.
T Consensus 75 P~v~GHt~----~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 75 PLVCGHTA----PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCccCccc----cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 345 7888 89999999954 56677 999999999864332211 168889999999999999999999
Q ss_pred ecCCcEEeeccCCCce-----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCC
Q 000378 81 LEDCTIRSCDFDTEQS-----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~q~-----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
+.|.+|.+||+.|+.. ++-|+-||..+. ++.|..| |- |+ .-++++|.-.-+|..
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkv-------Rv--~d----pr~~~~v~e~~~heG- 216 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKV-------RV--ID----PRRGTVVSEGVAHEG- 216 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccccee-------EE--Ec----CCCCcEeeecccccC-
Confidence 9999999999999642 889999999999 5999988 66 99 777777765444444
Q ss_pred cccccccCCCceEeeeecCCCeEEEE---ecCceEEEEecccceEEEEEee-ccccccccceeEeecCCceEEE-EecCC
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVA---YADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLF-VGDRR 223 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P~~~vL~~a---~~dg~IR~w~i~t~~v~~tL~~-~~~~~~~g~~a~Af~P~g~~l~-~G~~d 223 (1605)
-||.+. -|.-+|-++-+| ..|++|-+||-.|...---++. | -+.||====|-||-.+|. ||--|
T Consensus 217 -------~k~~Ra-ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD---tSnGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 217 -------AKPARA-IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD---TSNGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred -------CCccee-EEeccCceeeeccccccccceeccCcccccCcceeEEec---cCCceEEeeecCCCCEEEEEecCC
Confidence 223433 355666655444 4589999998777654333333 1 144555445689888888 99999
Q ss_pred CeEEeeecCCCCCeeeeec---------c-------ceeEEEEEEeeCCCCCccccccccc--CCcc--ccccceeeccC
Q 000378 224 GTLLAWDVSIERPSMIGMD---------G-------SLQVWKTRVIINPNRPPMQANFFEP--ASIE--SIDIPRILSQQ 283 (1605)
Q Consensus 224 gtl~~W~vs~~~~~m~g~~---------g-------~~~~w~~rv~~~~~~~~~~a~~~~~--a~~e--s~d~~~il~~~ 283 (1605)
+.|+-+-+..+-|-+-=+. | +|.| +-| --+-||.- -.|| |+-+||= |+-
T Consensus 286 ~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl~V-------s~c---EI~rfyKl~~~~~epIsm~VPRk-Sdl 354 (472)
T KOG0303|consen 286 SSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGLDV-------SKC---EIARFYKLHERKCEPISMTVPRK-SDL 354 (472)
T ss_pred cceEEEEecCCCceeEEecccccCCccccccccccccccc-------hHH---HHHHHHHhhcceeeeEEEecccc-chh
Confidence 9999999998887654330 1 1110 000 00112211 0122 2233333 333
Q ss_pred CCcceec-----CCcccccccccccchhhhhhhhccCCccccchhhHhHhhhhH
Q 000378 284 GGEAVYP-----LPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQ 332 (1605)
Q Consensus 284 ~g~~vyp-----~p~~~~~~~h~~~n~~~l~~~~~~~~~~~~~~~~~~~~~r~~ 332 (1605)
=-+-+|| -|-+++=|.---.|..-++++...|-+..++| ..++.|+.
T Consensus 355 FQeDlYPdt~~~~paLtAEEW~sGkda~Pilisl~~~y~~~~~~--~l~~~k~~ 406 (472)
T KOG0303|consen 355 FQEDLYPDTPGPEPALTAEEWLSGKDADPILISLRDGYVPPKHR--ELRVKKRN 406 (472)
T ss_pred hhhccCCCCCCCCccccHHHhhcCCCCCCeEEEcccccccccCc--cchhhhcc
Confidence 3344554 57777777777777777778877777777666 44555555
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=92.57 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=87.4
Q ss_pred EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEe
Q 000378 97 FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY 175 (1605)
Q Consensus 97 ~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~ 175 (1605)
+|+|++||..++ +..|+++ |-|=|- +-.++-+...|+. .|..|.|||||.+|++-+
T Consensus 149 ~vaf~~~gs~latgg~dg~l-------Rv~~~P------s~~t~l~e~~~~~----------eV~DL~FS~dgk~lasig 205 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTL-------RVWEWP------SMLTILEEIAHHA----------EVKDLDFSPDGKFLASIG 205 (398)
T ss_pred EEEEcCCCCEeeeccccceE-------EEEecC------cchhhhhhHhhcC----------ccccceeCCCCcEEEEec
Confidence 999999999999 5899999 875554 3333334444444 799999999999999999
Q ss_pred cCceEEEEecccceEE----------------------------EEEeec--------cccc--------------cccc
Q 000378 176 ADGLIRAYNIHTYAVH----------------------------YTLQLD--------NTIK--------------LLGA 205 (1605)
Q Consensus 176 ~dg~IR~w~i~t~~v~----------------------------~tL~~~--------~~~~--------------~~g~ 205 (1605)
.| ..|+|++++|..+ .+.+.+ -++. ..++
T Consensus 206 ~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 206 AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred CC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 99 9999999999211 122221 1111 1288
Q ss_pred eeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 206 GAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 206 ~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
.|+|-|+||+.+++|+-||.+.+.++..=
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 89999999999999999999999998643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=94.33 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=100.6
Q ss_pred eeee-ecCceEEEEeccCC----------ceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC--ce----
Q 000378 35 LIAV-AIGTYIIEFDTLTG----------SRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--QS---- 96 (1605)
Q Consensus 35 llA~-a~g~~I~l~d~~tG----------~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--q~---- 96 (1605)
+|++ =-++++.+||..+| +.++- ..|.-+|-++.|.+ .-..=++|+.|..+-.|.++.. +.
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccc
Confidence 4444 45789999999999 44444 78889999999985 2233358999999888888763 11
Q ss_pred ----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 97 ----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 97 ----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
-|--.||+|++| ++=|++| |-.-|. +..++..+.=|++ -|.+||||
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~Ri-------RVyswr------tl~pLAVLkyHsa----------gvn~vAfs 302 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRI-------RVYSWR------TLNPLAVLKYHSA----------GVNAVAFS 302 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcE-------EEEEec------cCCchhhhhhhhc----------ceeEEEeC
Confidence 455569999999 5889999 875555 5556666888998 99999999
Q ss_pred cCCCeEEEEecCceEEEEec
Q 000378 166 PRLPVLYVAYADGLIRAYNI 185 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i 185 (1605)
||.+++|+||.|+.|-+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999985
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.1e-06 Score=104.64 Aligned_cols=139 Identities=13% Similarity=0.127 Sum_probs=112.7
Q ss_pred eEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-Cce------
Q 000378 27 AAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT-EQS------ 96 (1605)
Q Consensus 27 ~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~-~q~------ 96 (1605)
.-|+++-=++|+ ++=..|.+|++. +-..++ .+|-..+.+|-||- ||+.+++.|+|.+||+|+++| ++.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~-~dn~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPH-EDNKPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EeccCcEEEEEeccccccEEEEecc-ccCCcceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCccccc
Confidence 457888888998 777799999988 555555 89999999999999 999999999999999999999 433
Q ss_pred ------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCe
Q 000378 97 ------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1605)
Q Consensus 97 ------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~v 170 (1605)
.+-|+|. +++..+.|=|- |.|=|+ ++++.++++|.. |-|+.+|-+++...
T Consensus 217 HsaRvw~~~~~~n-~i~t~gedctc-------rvW~~~-------~~~l~~y~~h~g---------~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 217 HSARVWACCFLPN-RIITVGEDCTC-------RVWGVN-------GTQLEVYDEHSG---------KGIWKIAVPIGVII 272 (967)
T ss_pred ccceeEEEEeccc-eeEEeccceEE-------EEEecc-------cceehhhhhhhh---------cceeEEEEcCCceE
Confidence 3344455 55556888666 664444 555656777776 89999999999999
Q ss_pred EEEEecCceEEEEecccceEE
Q 000378 171 LYVAYADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 171 L~~a~~dg~IR~w~i~t~~v~ 191 (1605)
++++..||.||+||..+--..
T Consensus 273 ~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred EEeeccCcchhhhhhhccccc
Confidence 999999999999998875443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.8e-06 Score=65.68 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=36.0
Q ss_pred eEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEe
Q 000378 137 TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYN 184 (1605)
Q Consensus 137 ~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~ 184 (1605)
+.+.+++||.. +|.+|+|+|++..|++|+.|++||+||
T Consensus 2 ~~~~~~~~h~~----------~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSS----------SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSS----------SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCC----------cEEEEEEecccccceeeCCCCEEEEEC
Confidence 56778999999 999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-05 Score=94.42 Aligned_cols=193 Identities=14% Similarity=0.162 Sum_probs=131.8
Q ss_pred eEEEEeccCCce-eeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce----------------E--EEe--C
Q 000378 43 YIIEFDTLTGSR-IASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----------------F--VLH--S 101 (1605)
Q Consensus 43 ~I~l~d~~tG~~-~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----------------~--v~~--s 101 (1605)
.+-+||...-.. ..++.-...|..++|+|.+.+.||.|+++|.|-+||+.-++- | |.+ +
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 588888775522 223777888999999999999999999999999999977421 1 111 2
Q ss_pred CC-ccccccccCceeEeccCCCcceEEe--ccccccceeEEeeeecCCCCcccccccCC--CceEeeeecCCCe-EEEEe
Q 000378 102 PE-KKMESISVDTEVHLALTPLQPVVFF--GFHRRMSVTVVGTVEGGRAPTKIKTDLKK--PIVNLACHPRLPV-LYVAY 175 (1605)
Q Consensus 102 p~-~~~~~~s~d~~ih~a~t~~~l~vw~--~~~~~~s~~~vgt~eG~~~~~~ik~d~kk--pV~~LA~~P~~~v-L~~a~ 175 (1605)
+. -+...+|+||.| .+ |+ .+|.++..... ... -++++++.+ .+++|+|+|-.|. .++|.
T Consensus 303 ~~~~~f~s~ssDG~i-------~~--W~~~~l~~P~e~~~~-----~~~-~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSI-------CS--WDTDMLSLPVEGLLL-----ESK-KHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred CCCCceEEEecCCcE-------ee--eeccccccchhhccc-----ccc-cccccccccccceeeEeeccCCCceEEEEc
Confidence 22 344557999999 77 54 22222222222 111 124555555 4688999976665 67889
Q ss_pred cCceEEEEecccceEE----EEEeeccccccccceeEeecCCceEEE-EecCCCeEEeeecC-CCCC-------------
Q 000378 176 ADGLIRAYNIHTYAVH----YTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS-IERP------------- 236 (1605)
Q Consensus 176 ~dg~IR~w~i~t~~v~----~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs-~~~~------------- 236 (1605)
++|.|--=+=+.+++. |+.+.=..+|.+.|.++-|+|=+.-+| +++ |.|++||.-. ...|
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 9999844244444444 466655677999999999999999999 433 9999999877 4444
Q ss_pred --------eeeee---ccceeEEEEE
Q 000378 237 --------SMIGM---DGSLQVWKTR 251 (1605)
Q Consensus 237 --------~m~g~---~g~~~~w~~r 251 (1605)
+.+=+ +|+|.+|-.+
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhh
Confidence 33333 7999999765
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.2e-05 Score=86.88 Aligned_cols=203 Identities=16% Similarity=0.124 Sum_probs=132.5
Q ss_pred CCCceeEeCCCcceeee-e-cCceEEEEeccCCceeeec-cCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce--
Q 000378 22 LQPHEAAFHPNQALIAV-A-IGTYIIEFDTLTGSRIASI-DINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~-a-~g~~I~l~d~~tG~~~~~l-~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~-- 96 (1605)
..|-++.|.+||-.|++ | .+.+|++||+.||.+++.. .-...+.-|-||| |||+|-|..-|.+-++|+-+.--+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e 274 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE 274 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec
Confidence 47999999999999998 4 5689999999999999995 4555678899999 999999999999999997765322
Q ss_pred ----------EEEeCCCcccccc-ccC-ceeEeccC-CCcceEEeccccccceeEEeeeecCCCCccc---ccccCCCce
Q 000378 97 ----------FVLHSPEKKMESI-SVD-TEVHLALT-PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI---KTDLKKPIV 160 (1605)
Q Consensus 97 ----------~v~~sp~~~~~~~-s~d-~~ih~a~t-~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i---k~d~kkpV~ 160 (1605)
.-.+||+|+.+=. ++. .++ -.++ +-+.-++.+ ..+-+.+ ++-.--..+-| .+-+--++.
T Consensus 275 rw~lgsgrvqtacWspcGsfLLf~~sgsp~l-ysl~f~~~~~~~~~---~~~~k~~-lliaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 275 RWILGSGRVQTACWSPCGSFLLFACSGSPRL-YSLTFDGEDSVFLR---PQSIKRV-LLIADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred ceeccCCceeeeeecCCCCEEEEEEcCCceE-EEEeecCCCccccC---cccceee-eeeccchhhhhhcCcccccCccc
Confidence 4468899998863 333 222 1111 112212221 1122222 11000011111 122345789
Q ss_pred EeeeecCCCeEEEEecCce--------EEEEecccceEEEEEeeccccccccceeEeecC---CceEEEEecCCCeEEee
Q 000378 161 NLACHPRLPVLYVAYADGL--------IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP---TLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a~~dg~--------IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P---~g~~l~~G~~dgtl~~W 229 (1605)
+||.-|.|..|||-+-.+- |-.||.+.-.+.+-+-- ..|..-+=..+.||| +|..|-++=.-|+|.=+
T Consensus 350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c-g~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC-GMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec-ccccCCCCceEEeeecccCCcEEEEEeccCceEee
Confidence 9999999999999987654 67788877776643322 123344455778877 46666665556666555
Q ss_pred ec
Q 000378 230 DV 231 (1605)
Q Consensus 230 ~v 231 (1605)
++
T Consensus 429 pl 430 (445)
T KOG2139|consen 429 PL 430 (445)
T ss_pred ee
Confidence 54
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.1e-05 Score=87.73 Aligned_cols=227 Identities=19% Similarity=0.193 Sum_probs=140.6
Q ss_pred cccccccccccccCCCCCCCCCceeEeCCCcceeee--ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|++.|+.=--.+..| ++...+++|||||+.|-. .++-.|++|...|.+---+.-.-.-|.-+||.| ||...+-.
T Consensus 76 wsl~Qpew~ckIdeg---~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~ 151 (447)
T KOG4497|consen 76 WSLVQPEWYCKIDEG---QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAIL 151 (447)
T ss_pred EEeecceeEEEeccC---CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeee
Confidence 666665444445333 357889999999976554 999999999999877665544445567788888 77665433
Q ss_pred ec-C-----------------------------------CcEEeeccCCC-----------ceEEEeCCCccccc-cccC
Q 000378 81 LE-D-----------------------------------CTIRSCDFDTE-----------QSFVLHSPEKKMES-ISVD 112 (1605)
Q Consensus 81 ~~-D-----------------------------------~tI~~wd~~~~-----------q~~v~~sp~~~~~~-~s~d 112 (1605)
+. | +.|-.||-..| --.|++||-++.++ +|.|
T Consensus 152 sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 152 SRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYD 231 (447)
T ss_pred ecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccc
Confidence 21 2 22333333322 11899999999999 5888
Q ss_pred cee---------------Ee----------ccCCCcceEEecccccc---------------ceeEEe----eeecCCCC
Q 000378 113 TEV---------------HL----------ALTPLQPVVFFGFHRRM---------------SVTVVG----TVEGGRAP 148 (1605)
Q Consensus 113 ~~i---------------h~----------a~t~~~l~vw~~~~~~~---------------s~~~vg----t~eG~~~~ 148 (1605)
+-+ |+ -.++.--.|+.+.|-.+ +...+. .+.--++|
T Consensus 232 ~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~ 311 (447)
T KOG4497|consen 232 QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPP 311 (447)
T ss_pred hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCC
Confidence 322 11 11110001111111111 000000 11112222
Q ss_pred cccccccCCCceEeeeecCCCeEEEEec--CceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeE
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYA--DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 226 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P~~~vL~~a~~--dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl 226 (1605)
|.--+ -|-.|--||||||...+++--+ -+-+-+||+|+-.++ ++.+ ..-.++||-++|+---|++-.-.-+|
T Consensus 312 tD~pn-Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-avLi----Qk~piraf~WdP~~prL~vctg~srL 385 (447)
T KOG4497|consen 312 TDFPN-PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-AVLI----QKHPIRAFEWDPGRPRLVVCTGKSRL 385 (447)
T ss_pred CCCCC-cccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-hhhh----hccceeEEEeCCCCceEEEEcCCceE
Confidence 22222 2555778999999999998652 245779999999988 5555 66789999999999888866666679
Q ss_pred EeeecCCCCCeeeee
Q 000378 227 LAWDVSIERPSMIGM 241 (1605)
Q Consensus 227 ~~W~vs~~~~~m~g~ 241 (1605)
.+|-.+- |-.+|.
T Consensus 386 Y~W~psg--~~~V~v 398 (447)
T KOG4497|consen 386 YFWAPSG--PRVVGV 398 (447)
T ss_pred EEEcCCC--ceEEec
Confidence 9997665 666666
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.9e-05 Score=84.60 Aligned_cols=205 Identities=19% Similarity=0.194 Sum_probs=128.8
Q ss_pred eEeCCCcceeeeecCceEEEEeccCC-----ceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEe
Q 000378 27 AAFHPNQALIAVAIGTYIIEFDTLTG-----SRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1605)
Q Consensus 27 ~aF~P~gallA~a~g~~I~l~d~~tG-----~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~ 100 (1605)
++-++||++||+=-|+.|.+=-++.. .|..+ -|.-+-=.++|||| |+..||-....|+|++.|+.....+ .-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 46789999999988888877555432 23344 56666668999999 9989999999999999999753221 11
Q ss_pred CCCccccccccCceeEeccCCC--------cceEEeccccccceeE-EeeeecCCCCc--ccccccCCCceEeeeecCCC
Q 000378 101 SPEKKMESISVDTEVHLALTPL--------QPVVFFGFHRRMSVTV-VGTVEGGRAPT--KIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 101 sp~~~~~~~s~d~~ih~a~t~~--------~l~vw~~~~~~~s~~~-vgt~eG~~~~~--~ik~d~kkpV~~LA~~P~~~ 169 (1605)
+|.-.....-++--.-|.+.+. .+.|-+=--...+-.+ +||-.++..-- -+....++-|.+..+||.++
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 2211110001110011112221 2222220001123333 24433433311 24456788999999999999
Q ss_pred eEEEEecCc-----------eEEEEecccceEEEEEee--cccccc-----------------------ccceeEeecCC
Q 000378 170 VLYVAYADG-----------LIRAYNIHTYAVHYTLQL--DNTIKL-----------------------LGAGAFAFHPT 213 (1605)
Q Consensus 170 vL~~a~~dg-----------~IR~w~i~t~~v~~tL~~--~~~~~~-----------------------~g~~a~Af~P~ 213 (1605)
+|++|+.+- -+-+|.|-++.++|.+-. ++-+.. .||--+..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 999998531 245999999999997432 222221 14445666999
Q ss_pred ceEEEEecCCCeEEeeecCC
Q 000378 214 LEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 214 g~~l~~G~~dgtl~~W~vs~ 233 (1605)
|+.||+=.-+|+|++|+++-
T Consensus 241 g~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCEEEEEEcCCeEEEEecCc
Confidence 99999999999999999973
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=89.94 Aligned_cols=188 Identities=17% Similarity=0.188 Sum_probs=129.1
Q ss_pred eEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC---------ce-
Q 000378 27 AAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE---------QS- 96 (1605)
Q Consensus 27 ~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~---------q~- 96 (1605)
.+|||+|+++|+..+-++.+=|..|=......-.-..|+-|-++.+.-|.|-++.-|+-|..|++... +.
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag 93 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG 93 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence 48999999999988889999998876655553335678889999866699999999999999999873 11
Q ss_pred --EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEE
Q 000378 97 --FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1605)
Q Consensus 97 --~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a 174 (1605)
+.-.|||||-|-.-+.=. +|.-||- ..+.+.+ -+.--+ .-|...||||||++-+-.
T Consensus 94 ls~~~WSPdgrhiL~tseF~-------lriTVWS----L~t~~~~-~~~~pK----------~~~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEFD-------LRITVWS----LNTQKGY-LLPHPK----------TNVKGYAFHPDGQFCAIL 151 (447)
T ss_pred ceeeeECCCcceEeeeecce-------eEEEEEE----eccceeE-Eecccc----------cCceeEEECCCCceeeee
Confidence 788899997554222111 3666788 6665555 222222 256889999999999988
Q ss_pred ecCceEEEEecccceEEE---------EEeeccccccccceeEeecCCceEEEEec--CCCeEEeeecC---------C-
Q 000378 175 YADGLIRAYNIHTYAVHY---------TLQLDNTIKLLGAGAFAFHPTLEWLFVGD--RRGTLLAWDVS---------I- 233 (1605)
Q Consensus 175 ~~dg~IR~w~i~t~~v~~---------tL~~~~~~~~~g~~a~Af~P~g~~l~~G~--~dgtl~~W~vs---------~- 233 (1605)
+-- |-.+|..+. .+. =+||.+.| +-++|||.||+|.| -+-.|.++-.+ +
T Consensus 152 sRr------DCkdyv~i~~c~~W~ll~~f~-~dT~Dltg---ieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~ 221 (447)
T KOG4497|consen 152 SRR------DCKDYVQISSCKAWILLKEFK-LDTIDLTG---IEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPC 221 (447)
T ss_pred ecc------cHHHHHHHHhhHHHHHHHhcC-CCcccccC---ceECCCCcEEEEecchhhheeeeeeeccceeEEEeccc
Confidence 721 555554442 011 13445555 56899999999998 56666666553 2
Q ss_pred CCCeeeee-cccee
Q 000378 234 ERPSMIGM-DGSLQ 246 (1605)
Q Consensus 234 ~~~~m~g~-~g~~~ 246 (1605)
++=--||. ||+|.
T Consensus 222 ~qflavGsyD~~lr 235 (447)
T KOG4497|consen 222 NQFLAVGSYDQMLR 235 (447)
T ss_pred cceEEeeccchhhh
Confidence 33345665 67765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.6e-05 Score=99.16 Aligned_cols=173 Identities=15% Similarity=0.086 Sum_probs=140.5
Q ss_pred eCCCcceeee-ecCceEEEEeccCCceeeeccCCccee-----eeeecCCCCceEEEEecCCcEEeeccCC-Cce-----
Q 000378 29 FHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVV-----RMAYSPTSGHAVVAILEDCTIRSCDFDT-EQS----- 96 (1605)
Q Consensus 29 F~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~-----~lA~SP~~g~~laa~~~D~tI~~wd~~~-~q~----- 96 (1605)
|.=.-+.+|. ..+.-+.+||.+.++...-+..+..+. =+-+|+ +-=++++|+-=+-|..|++.- ..+
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecc
Confidence 3333444555 888899999999888877766655442 223455 446889999999999999873 111
Q ss_pred ------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEe-eeecCCCCcccccccCCCceEeeeecCC
Q 000378 97 ------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG-TVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1605)
Q Consensus 97 ------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vg-t~eG~~~~~~ik~d~kkpV~~LA~~P~~ 168 (1605)
++-+|-||+.++ .|.|+++ |+ |- .-+..+++ |.=||++ -|+.+-|+|-
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsi-------Rl--W~----i~s~~~~~~~~fgHsa----------Rvw~~~~~~n- 229 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSI-------RL--WP----IDSREVLGCTGFGHSA----------RVWACCFLPN- 229 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcce-------ee--ee----cccccccCcccccccc----------eeEEEEeccc-
Confidence 889999999999 6999999 99 88 88888888 8999999 9999999999
Q ss_pred CeEEEEecCceEEEEecccceEEEEEeeccccccc-cceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 169 PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL-GAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 169 ~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~-g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
-++++++|=+-|.|+ .+++++=+..+ |.. ++..++.+++--|+++|..||+|++||..
T Consensus 230 -~i~t~gedctcrvW~-~~~~~l~~y~~----h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWG-VNGTQLEVYDE----HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred -eeEEeccceEEEEEe-cccceehhhhh----hhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 999999999999994 45555545555 766 88999999999999999999999999987
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.8e-05 Score=87.41 Aligned_cols=129 Identities=19% Similarity=0.363 Sum_probs=94.0
Q ss_pred CCceeEeCCC---cceeeeecCc------e--EEEEeccCCce---eee-ccCCcceeeeeecCCCC---ceEEEEecCC
Q 000378 23 QPHEAAFHPN---QALIAVAIGT------Y--IIEFDTLTGSR---IAS-IDINSPVVRMAYSPTSG---HAVVAILEDC 84 (1605)
Q Consensus 23 ~v~~~aF~P~---gallA~a~g~------~--I~l~d~~tG~~---~~~-l~~~~~v~~lA~SP~~g---~~laa~~~D~ 84 (1605)
.--|+.|.|. -.+||++.+. . |.+++- .|+| +.. .+|+.||..|+|+|--| |+||+++.||
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e-~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE-NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecC-CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 4568999875 4789998887 4 445553 3322 233 89999999999999877 9999999999
Q ss_pred cEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeee
Q 000378 85 TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 85 tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~ 164 (1605)
||.|.+..-...+ + +.+. ...+... +..+..|+-+.+|.. +|+.+-+
T Consensus 250 -v~I~~v~~~~s~i-~--~ee~--~~~~~~~-----------------~l~v~~vs~~~~H~~----------~VWrv~w 296 (361)
T KOG2445|consen 250 -VRIFKVKVARSAI-E--EEEV--LAPDLMT-----------------DLPVEKVSELDDHNG----------EVWRVRW 296 (361)
T ss_pred -EEEEEEeeccchh-h--hhcc--cCCCCcc-----------------ccceEEeeeccCCCC----------ceEEEEE
Confidence 9999994432222 1 1111 1222111 234566667888888 9999999
Q ss_pred ecCCCeEEEEecCceEEEEec
Q 000378 165 HPRLPVLYVAYADGLIRAYNI 185 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i 185 (1605)
.=-|-+|+|.+.||.||+|-.
T Consensus 297 NmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeeeEEeecCCCceeeehhh
Confidence 999999999999999999963
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=87.78 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=108.2
Q ss_pred CceeEeCC--CcceeeeecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC-ce--
Q 000378 24 PHEAAFHP--NQALIAVAIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-QS-- 96 (1605)
Q Consensus 24 v~~~aF~P--~gallA~a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q~-- 96 (1605)
--+.+||| ||-.+|+.-|+++.-||.+|-++.-+ -.|+-.|..|-|+|..-|+||++..||-||+||.-.- .+
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 34567766 89999999999999999999999887 6788999999999977799999999999999997652 11
Q ss_pred ----------EEEeCCCcccc--ccccCceeEeccCCCcceEEeccccccceeEE------eeeecCCCCcccc------
Q 000378 97 ----------FVLHSPEKKME--SISVDTEVHLALTPLQPVVFFGFHRRMSVTVV------GTVEGGRAPTKIK------ 152 (1605)
Q Consensus 97 ----------~v~~sp~~~~~--~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~v------gt~eG~~~~~~ik------ 152 (1605)
+|-|+|.-..+ .+|+|..| ++|++-. .++-..| ...|+|..--|.|
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V---------~Lsca~s-vSSE~qi~~~~dese~e~~dseer~kpL~dg~ 322 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAV---------NLSCASS-VSSEQQIEFEDDESESEDEDSEERVKPLQDGQ 322 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCcee---------EEEeccc-cccccccccccccccCcchhhHHhcccccccc
Confidence 99999765544 46888877 3477211 1111111 1244444444433
Q ss_pred ----cccCCCceEeeeecCCCeEEEE-ecCceEEE
Q 000378 153 ----TDLKKPIVNLACHPRLPVLYVA-YADGLIRA 182 (1605)
Q Consensus 153 ----~d~kkpV~~LA~~P~~~vL~~a-~~dg~IR~ 182 (1605)
++++-.|-++|+|...||+++. |-||-+-+
T Consensus 323 l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 323 LETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 3566699999999999998764 44665533
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.1e-05 Score=90.48 Aligned_cols=224 Identities=11% Similarity=0.134 Sum_probs=131.5
Q ss_pred eeEeCCCcceeeeecCceEEEEeccCCceeee-----ccCCcceeeeeec-----CCCCceEEEEecCCcEEeeccCCC-
Q 000378 26 EAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-----IDINSPVVRMAYS-----PTSGHAVVAILEDCTIRSCDFDTE- 94 (1605)
Q Consensus 26 ~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-----l~~~~~v~~lA~S-----P~~g~~laa~~~D~tI~~wd~~~~- 94 (1605)
.--|+=+|..|.-.+|+.+.+|+-..|...+. .--+..-+.=+|. | .|+-|..|..-+-|.+.|...+
T Consensus 128 ~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~idp~~~~ 206 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATP-KGLDLLIGFTTGQVQLIDPINFE 206 (636)
T ss_pred eccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCC-CCcceEEeeccCceEEecchhhH
Confidence 34456677888889999999999776554433 1111111122221 4 5566666777677766665432
Q ss_pred ---------------ceEEEeCCCcccc--ccccCc-------eeEeccCCCcceEEeccccccceeEEeeeecCCCC--
Q 000378 95 ---------------QSFVLHSPEKKME--SISVDT-------EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP-- 148 (1605)
Q Consensus 95 ---------------q~~v~~sp~~~~~--~~s~d~-------~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~-- 148 (1605)
-||+.+-|-+..+ +.-.++ ++-++-|+.. |- ++|.-+.-.|.|-.+++..
T Consensus 207 ~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~---~~-~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 207 VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS---YQ-ALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc---cc-ccCCCCeeEEeeeeccccCCc
Confidence 1244444433322 211111 1112222211 11 1222222233333333320
Q ss_pred cccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEe
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 228 (1605)
Q Consensus 149 ~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~ 228 (1605)
.-==.--+-+|.+.+|||||..||+-|.||..|++|..+-..+....- --+|.-|+.+||||+.|+||+.|..+.+
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS----YFGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS----YFGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh----hccceEEEEEcCCccEEEecCCcceEEE
Confidence 000000112788999999999999999999999999998776644333 3457779999999999999999999999
Q ss_pred eecCCCCCeeeeeccceeEEEEEEeeCCCCCc
Q 000378 229 WDVSIERPSMIGMDGSLQVWKTRVIINPNRPP 260 (1605)
Q Consensus 229 W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~ 260 (1605)
|-+.+-|= +-=+-+=+-|-.-|+-+|-...
T Consensus 359 wSf~erRV--VARGqGHkSWVs~VaFDpytt~ 388 (636)
T KOG2394|consen 359 WSFEERRV--VARGQGHKSWVSVVAFDPYTTS 388 (636)
T ss_pred EEeccceE--EEeccccccceeeEeecccccc
Confidence 99876653 2222244568888888874433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0012 Score=70.23 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=121.9
Q ss_pred ceeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEE---EeC
Q 000378 25 HEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV---LHS 101 (1605)
Q Consensus 25 ~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v---~~s 101 (1605)
.+.++..++.+++.+.+..|..||+.||+.+=......++.... .. ++..|+++..|+.|+.+|..|.+..- ..+
T Consensus 29 ~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 29 VATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred cceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-ee-cccccccccceeeeEecccCCcceeeeecccc
Confidence 33355567777777899999999999999987755544433221 22 44577777799999999998865521 111
Q ss_pred -CCccc---cc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccc-cCCCceEeeeecCCCeEEEEe
Q 000378 102 -PEKKM---ES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD-LKKPIVNLACHPRLPVLYVAY 175 (1605)
Q Consensus 102 -p~~~~---~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d-~kkpV~~LA~~P~~~vL~~a~ 175 (1605)
|+-.. .. ...+..+.++.+.-.++.++ ..+++.+-....+.++-....+ +...-..+.++ ++ .+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d----~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~ 180 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALD----PKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS 180 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETCSEEEEEE----TTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC
T ss_pred ccccccccccCceEecCEEEEEeccCcEEEEe----cCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc
Confidence 22111 11 11245565666666777788 8899998877775541110000 00011233333 45 777777
Q ss_pred cCc-eEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 176 ADG-LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 176 ~dg-~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
.+| ++.+ |+.|+..++ +. + ++. ..+ ...+++..|++++++|+|.+||+.+-+
T Consensus 181 ~~g~~~~~-d~~tg~~~w--~~-~-~~~--~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 181 GDGRVVAV-DLATGEKLW--SK-P-ISG--IYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CTSSEEEE-ETTTTEEEE--EE-C-SS---ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCeEEEE-ECCCCCEEE--Ee-c-CCC--ccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 788 5655 999999774 22 1 232 222 157899999999999999999998753
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0012 Score=78.26 Aligned_cols=209 Identities=12% Similarity=0.084 Sum_probs=118.6
Q ss_pred ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEe---------cCCcEEeeccCCCce----------------
Q 000378 42 TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL---------EDCTIRSCDFDTEQS---------------- 96 (1605)
Q Consensus 42 ~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~---------~D~tI~~wd~~~~q~---------------- 96 (1605)
.+|.+.|+.|++.+..+..+..-+-+ +||++....++-. .+++|..||..|.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 69999999999999987666554445 9994446666666 699999999999533
Q ss_pred ---EEEeCCCcccccccc---CceeEeccC-----------CCcceEEecccc-------ccceeEEeeeec----CCCC
Q 000378 97 ---FVLHSPEKKMESISV---DTEVHLALT-----------PLQPVVFFGFHR-------RMSVTVVGTVEG----GRAP 148 (1605)
Q Consensus 97 ---~v~~sp~~~~~~~s~---d~~ih~a~t-----------~~~l~vw~~~~~-------~~s~~~vgt~eG----~~~~ 148 (1605)
.+++|||||.+-++. +..|.+=.+ |-+.+++----. .-+-..| +++. +...
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v-~~d~~g~~~~~~ 184 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKV-GYGTKGNPKIKP 184 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEE-EecCCCceEEee
Confidence 467888888776432 445522222 222212210000 0000011 1100 0111
Q ss_pred ccc-cccc----CCCceEeeeec-CCCeEEEEecCceEEEEeccc-----ceEEEEEeec---cccccccceeEeecCCc
Q 000378 149 TKI-KTDL----KKPIVNLACHP-RLPVLYVAYADGLIRAYNIHT-----YAVHYTLQLD---NTIKLLGAGAFAFHPTL 214 (1605)
Q Consensus 149 ~~i-k~d~----kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t-----~~v~~tL~~~---~~~~~~g~~a~Af~P~g 214 (1605)
+++ +.|. .+| +|+| |+..||+.|+ |.|..-|+.+ .++.-+++.. .-++-.|.+-+||||+|
T Consensus 185 ~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 185 TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 111 1111 344 5675 9999999996 9999999544 4443333221 12456677789999999
Q ss_pred eEEEEecCCCe--------EEeeecCCCCCeeeee-ccceeEEEEEEeeCCCCC
Q 000378 215 EWLFVGDRRGT--------LLAWDVSIERPSMIGM-DGSLQVWKTRVIINPNRP 259 (1605)
Q Consensus 215 ~~l~~G~~dgt--------l~~W~vs~~~~~m~g~-~g~~~~w~~rv~~~~~~~ 259 (1605)
..|+|..+.+. -.+|=+++.+-..++- .-.-.+|.. .++|+.-
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~i--avS~Dgk 311 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSI--NVSQDAK 311 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeE--EECCCCC
Confidence 99999643322 3444444455555553 222244543 3455433
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00063 Score=81.67 Aligned_cols=150 Identities=8% Similarity=-0.031 Sum_probs=91.9
Q ss_pred ceEEEEeccCCceeeeccCCcceeeeeecCCCCce-EEEEecC---CcEEeeccCCCce-----------EEEeCCCccc
Q 000378 42 TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHA-VVAILED---CTIRSCDFDTEQS-----------FVLHSPEKKM 106 (1605)
Q Consensus 42 ~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~-laa~~~D---~tI~~wd~~~~q~-----------~v~~sp~~~~ 106 (1605)
..|.+=|....-...++..+ ....-.||| ||+. ++-.+.+ ..|+++|+.+.+. ...+||||+.
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 47777775433333334444 788999999 7764 5544544 5699999998643 4568889888
Q ss_pred ccc--ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecC-c--eEE
Q 000378 107 ESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-G--LIR 181 (1605)
Q Consensus 107 ~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~d-g--~IR 181 (1605)
++. +.++.- ++|+++ ..++... .+..+.. -..+-.|+|||..||-.++. | .|-
T Consensus 247 la~~~~~~g~~-------~Iy~~d----l~~g~~~-~LT~~~~----------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy 304 (419)
T PRK04043 247 LLLTMAPKGQP-------DIYLYD----TNTKTLT-QITNYPG----------IDVNGNFVEDDKRIVFVSDRLGYPNIF 304 (419)
T ss_pred EEEEEccCCCc-------EEEEEE----CCCCcEE-EcccCCC----------ccCccEECCCCCEEEEEECCCCCceEE
Confidence 874 223322 456666 3222211 1222211 23445799999988877732 2 677
Q ss_pred EEecccceEEEEEeeccccccccceeEeecCCceEEE-EecC
Q 000378 182 AYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDR 222 (1605)
Q Consensus 182 ~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~ 222 (1605)
.+|+.+|++. .+.- .|....++||||++|+ +...
T Consensus 305 ~~dl~~g~~~-rlt~------~g~~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 305 MKKLNSGSVE-QVVF------HGKNNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred EEECCCCCeE-eCcc------CCCcCceECCCCCEEEEEEcC
Confidence 7888888885 3322 1222358999999998 5544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0003 Score=79.25 Aligned_cols=165 Identities=14% Similarity=0.123 Sum_probs=130.3
Q ss_pred cCCCCCCCCCceeEeCCCcceeeeecCceEEEEecc-----CCceeee---------ccCCcceeeeeecCCCCceEEEE
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTL-----TGSRIAS---------IDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~-----tG~~~~~---------l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
+|-+ .+..++|| -++|.++.|..|+=|.=. .++|..- .-.-+-|++|..-|..+.++-||
T Consensus 60 ahdg----piy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 60 AHDG----PIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred ccCC----Ceeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence 5666 78999999 678888777899877532 2222211 11234578999999999888888
Q ss_pred ecCCcEEeeccCCCce------------EEEe-CCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCC
Q 000378 81 LEDCTIRSCDFDTEQS------------FVLH-SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~q~------------~v~~-sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~ 147 (1605)
-||.|+-||+.+++- ||+- +-.++++.++.|||+ |. |. .++.+-|.++|--+.
T Consensus 134 -GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv-------Rv--Wd----~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 134 -GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV-------RV--WD----TKTQKHVSMIEPYKN 199 (325)
T ss_pred -CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE-------EE--Ee----ccccceeEEeccccC
Confidence 899999999999632 4443 788999999999999 88 99 999999999999999
Q ss_pred CcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccc
Q 000378 148 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL 202 (1605)
Q Consensus 148 ~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~ 202 (1605)
+..++.|-.|=|-+||-+- -||+.|.-- -.-+||+-..+..+++-+---+|+
T Consensus 200 ~~~lRp~~g~wigala~~e--dWlvCGgGp-~lslwhLrsse~t~vfpipa~v~~ 251 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAVNE--DWLVCGGGP-KLSLWHLRSSESTCVFPIPARVHL 251 (325)
T ss_pred hhhcCcccCceeEEEeccC--ceEEecCCC-ceeEEeccCCCceEEEecccceeE
Confidence 9999999999999999865 499999844 445999999999988877444443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.2e-05 Score=88.11 Aligned_cols=172 Identities=17% Similarity=0.135 Sum_probs=134.1
Q ss_pred ceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEecccc
Q 000378 53 SRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHR 132 (1605)
Q Consensus 53 ~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~ 132 (1605)
|+-.+++|..-|.+|-||- +|..||+|..|..+++|+++. + -.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de------------------------------~--~~---- 90 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDE------------------------------L--MV---- 90 (609)
T ss_pred hhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHH------------------------------H--Hh----
Confidence 5556689999999999998 689999999999999998821 1 11
Q ss_pred ccceeEEee-eecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeec
Q 000378 133 RMSVTVVGT-VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFH 211 (1605)
Q Consensus 133 ~~s~~~vgt-~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~ 211 (1605)
+.+.+++|. -+-|+. -|-||||.--...||||..+|+|-+-||.|-+-+|-.-.++ ..+.|.-+.-|
T Consensus 91 ~k~~KPI~~~~~~H~S----------NIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~--~~~~VY~m~~~ 158 (609)
T KOG4227|consen 91 RKTPKPIGVMEHPHRS----------NIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENN--NRGDVYHMDQH 158 (609)
T ss_pred hcCCCCceeccCcccc----------ceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccC--cccceeecccC
Confidence 445567764 667777 89999999999999999999999999999999998776643 23466778889
Q ss_pred CCceEEEEecCCCeEEeeecCCCCCeeeee-----cc-ceeEEEEEEeeCCCCCcccccccccCCccccccce
Q 000378 212 PTLEWLFVGDRRGTLLAWDVSIERPSMIGM-----DG-SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPR 278 (1605)
Q Consensus 212 P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~-----~g-~~~~w~~rv~~~~~~~~~~a~~~~~a~~es~d~~~ 278 (1605)
|+-.+++|-+++|++++||.-. +|+-|-. -| +. --|..||-.|-.-+-..+--|+-=.|+-+
T Consensus 159 P~DN~~~~~t~~~~V~~~D~Rd-~~~~~~~~~~AN~~~~F----~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 159 PTDNTLIVVTRAKLVSFIDNRD-RQNPISLVLPANSGKNF----YTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CCCceEEEEecCceEEEEeccC-CCCCCceeeecCCCccc----eeeeecCCCceeEEeccccCCCCceeecc
Confidence 9998999999999999999873 3322222 12 22 24667888888877777777877777765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00047 Score=84.28 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=124.1
Q ss_pred eCCCcceeee-ecCceEEEEeccCCceeee----ccCCcceeeee------ecCC-----------CC--ceEEEEecCC
Q 000378 29 FHPNQALIAV-AIGTYIIEFDTLTGSRIAS----IDINSPVVRMA------YSPT-----------SG--HAVVAILEDC 84 (1605)
Q Consensus 29 F~P~gallA~-a~g~~I~l~d~~tG~~~~~----l~~~~~v~~lA------~SP~-----------~g--~~laa~~~D~ 84 (1605)
|.|-+.++|. ..|+++++||..+++.-.- .......+..+ |||. .+ .+||=|-..|
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4677889998 8899999999999987543 33333333333 3331 22 4566677888
Q ss_pred cEEeeccCCCce--------------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCc
Q 000378 85 TIRSCDFDTEQS--------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1605)
Q Consensus 85 tI~~wd~~~~q~--------------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~ 149 (1605)
.|-+++..-.+. +++-+.+.+.+- .+.|..| ++|. ..+...+-...+...
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v---------~~~~----~~~~~~~~~~~~~~~-- 145 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKV---------VYIL----EKEKVIIRIWKEQKP-- 145 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeE---------EEEe----cccceeeeeeccCCC--
Confidence 888888877544 333333333222 2333333 6687 666666655666666
Q ss_pred ccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCC-----ceEEEEec-CC
Q 000378 150 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-----LEWLFVGD-RR 223 (1605)
Q Consensus 150 ~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~-----g~~l~~G~-~d 223 (1605)
-|.++..+||+..|.+|| ++|++||+.+.++.-|+++ |...|++++|--. |+.+-+++ .+
T Consensus 146 --------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg----h~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 146 --------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG----HGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred --------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC----CCcceEEEEEEEeccccccceeeeccccc
Confidence 899999999999999999 9999999999999999999 9999999999766 66655433 55
Q ss_pred CeEEeeecC
Q 000378 224 GTLLAWDVS 232 (1605)
Q Consensus 224 gtl~~W~vs 232 (1605)
.-|..|.+.
T Consensus 212 r~i~~w~v~ 220 (541)
T KOG4547|consen 212 RGITVWVVE 220 (541)
T ss_pred cceeEEEEE
Confidence 556666655
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0025 Score=74.87 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=139.2
Q ss_pred cccccCCCCCCCCCceeEeCCCcceeeee--cCceEEEEeccC-Cceeee---ccCCcc----------eeeeeecCCCC
Q 000378 11 LRHVGRGDHKPLQPHEAAFHPNQALIAVA--IGTYIIEFDTLT-GSRIAS---IDINSP----------VVRMAYSPTSG 74 (1605)
Q Consensus 11 l~~~g~~~~~~~~v~~~aF~P~gallA~a--~g~~I~l~d~~t-G~~~~~---l~~~~~----------v~~lA~SP~~g 74 (1605)
|..++|-......|--++++++|++|.++ -...|.++=..+ |+.... ..|..+ ++..-|.| +|
T Consensus 78 Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~ 156 (346)
T COG2706 78 LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DG 156 (346)
T ss_pred EEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CC
Confidence 33444444334466789999999999882 335788887755 776655 666666 88889999 66
Q ss_pred -ceEEEEecCCcEEeeccCCCce---------------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccce
Q 000378 75 -HAVVAILEDCTIRSCDFDTEQS---------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSV 136 (1605)
Q Consensus 75 -~~laa~~~D~tI~~wd~~~~q~---------------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~ 136 (1605)
.+++.-+--+.|.++|+++.+. +++|+|+++..=+ -=++|| .||- +... .
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV---------~v~~--y~~~-~ 224 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTV---------DVLE--YNPA-V 224 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEE---------EEEE--EcCC-C
Confidence 5555556667899999997533 8999999986552 223566 3444 1111 2
Q ss_pred eEEeeeecCCCCcccccccCCCceEeeee--cCCCeEEEEe--cCceEEEEecccceEEEEEeeccccccccceeEeecC
Q 000378 137 TVVGTVEGGRAPTKIKTDLKKPIVNLACH--PRLPVLYVAY--ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP 212 (1605)
Q Consensus 137 ~~vgt~eG~~~~~~ik~d~kkpV~~LA~~--P~~~vL~~a~--~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P 212 (1605)
..+..++-+.. ++.|.-+.-++=|.| |||++||+.- .| .|-+|.|....-+-++-.--..+...=+.|.|.|
T Consensus 225 g~~~~lQ~i~t---lP~dF~g~~~~aaIhis~dGrFLYasNRg~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 225 GKFEELQTIDT---LPEDFTGTNWAAAIHISPDGRFLYASNRGHD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred ceEEEeeeecc---CccccCCCCceeEEEECCCCCEEEEecCCCC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence 22223343433 667777777777766 9999999873 23 6767777654332233332233455557999999
Q ss_pred CceEEE-EecCCCeEEeeecCCCC
Q 000378 213 TLEWLF-VGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 213 ~g~~l~-~G~~dgtl~~W~vs~~~ 235 (1605)
+|..|+ .+..+++|.++-++.++
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCC
Confidence 999999 67799999999998665
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.6e-05 Score=60.43 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=36.9
Q ss_pred ceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 188 YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 188 ~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
|+.+.++++ |...+.+++|+|++..|++|+.||+|++||
T Consensus 1 g~~~~~~~~----h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG----HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES----SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC----CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467789999 999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=87.22 Aligned_cols=163 Identities=11% Similarity=0.064 Sum_probs=121.5
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeec---------c
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD---------F 91 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd---------~ 91 (1605)
++.|.-|+|||+=|.+ +-|+-||+|. .+|-..++ .-..-+|..+||.|++..+|-.-..-+.||.-. .
T Consensus 106 A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRA 184 (737)
T ss_pred hhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEec
Confidence 7888999999998877 9999999999 89999888 677889999999997778777666666676543 3
Q ss_pred CCC-ceEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC
Q 000378 92 DTE-QSFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 92 ~~~-q~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~ 169 (1605)
.++ -.|+-+||..-+|+ ++.|- |-=||+|+-+..= |-..|-- ||+++||.|| .
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~---------kfKvWD~~G~~Lf-----~S~~~ey----------~ITSva~npd-~ 239 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDF---------RFKIWDAQGANLF-----TSAAEEY----------AITSVAFNPE-K 239 (737)
T ss_pred cCcEEEEeecCccccceeecCCce---------eEEeecccCcccc-----cCChhcc----------ceeeeeeccc-c
Confidence 333 23888999998886 45553 4455996654321 2233444 9999999999 6
Q ss_pred eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEE
Q 000378 170 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~ 227 (1605)
..+++| =++.|+= ....+.+-++++||||--+++|..-|.+-
T Consensus 240 ~~~v~S-~nt~R~~---------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 240 DYLLWS-YNTARFS---------------SPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ceeeee-eeeeeec---------------CCCccceEEEEEcCCCceeeccccCceEE
Confidence 666666 4555522 23455666899999999999998777654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0021 Score=70.29 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=113.1
Q ss_pred CceeEeC-CCcceeeeecCceEEEEeccCCceeeeccC------CcceeeeeecCCCCceEEEEecC--------CcEEe
Q 000378 24 PHEAAFH-PNQALIAVAIGTYIIEFDTLTGSRIASIDI------NSPVVRMAYSPTSGHAVVAILED--------CTIRS 88 (1605)
Q Consensus 24 v~~~aF~-P~gallA~a~g~~I~l~d~~tG~~~~~l~~------~~~v~~lA~SP~~g~~laa~~~D--------~tI~~ 88 (1605)
+.+++|+ ++|.++++..+ .+.++|..||+....... ....+.+++.| +|.+.++-... +.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 8889999 88888777544 566669999977766333 45668899999 78776665544 56888
Q ss_pred eccCCCce-----------EEEeCCCcccccc--ccCceeEeccCCCcceEEecccc---ccceeEEeeeecCCCCcccc
Q 000378 89 CDFDTEQS-----------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHR---RMSVTVVGTVEGGRAPTKIK 152 (1605)
Q Consensus 89 wd~~~~q~-----------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~---~~s~~~vgt~eG~~~~~~ik 152 (1605)
+|.+ .+. -++||||++++=. |...+| |.|.--.. .....++..+.+...
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i---------~~~~~~~~~~~~~~~~~~~~~~~~~g----- 184 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI---------WRFDLDADGGELSNRRVFIDFPGGPG----- 184 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE---------EEEEEETTTCCEEEEEEEEE-SSSSC-----
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeeccccccee---------EEEeccccccceeeeeeEEEcCCCCc-----
Confidence 8887 322 6889999986642 333444 33430000 011222222232221
Q ss_pred cccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEee-cCCceEEEEec
Q 000378 153 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF-HPTLEWLFVGD 221 (1605)
Q Consensus 153 ~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af-~P~g~~l~~G~ 221 (1605)
-.-+||+..+|.+.++.+..+.|..||-. |+++..+.. -...+.+++| .|++..||+-+
T Consensus 185 -----~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~----p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 185 -----YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL----PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -----EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----SSSSEEEEEEESTTSSEEEEEE
T ss_pred -----CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC----CCCCEEEEEEECCCCCEEEEEe
Confidence 35799999999877777778999999988 999888877 3447889999 69999998644
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=84.59 Aligned_cols=199 Identities=15% Similarity=0.210 Sum_probs=114.3
Q ss_pred CCCceeEeCCCcceeeeec-C--ceEEEEeccCCce----eee--cc-CCcceeeeeecCCCCceEEEEecCCcEEeecc
Q 000378 22 LQPHEAAFHPNQALIAVAI-G--TYIIEFDTLTGSR----IAS--ID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~a~-g--~~I~l~d~~tG~~----~~~--l~-~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~ 91 (1605)
+.+..+.+||+|++||++. + +++.+|+.. ++ ++. .. -+-.+..+.++- .+.+......++.+..|..
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~--~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYREN--PKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecC--CCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecc
Confidence 4677889999999999933 2 346666544 33 111 11 111222333333 3333333445556666665
Q ss_pred CCCc-----------eEEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEee-eecCCCCcccccccCCC
Q 000378 92 DTEQ-----------SFVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 92 ~~~q-----------~~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~d~kkp 158 (1605)
+... +-|++|||++.|=. -+|.-| | |.|+ .. ..++.+ .-||++ =
T Consensus 140 ~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkI-------R-vs~y----pa-~f~IesfclGH~e----------F 196 (390)
T KOG3914|consen 140 DSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKI-------R-VSRY----PA-TFVIESFCLGHKE----------F 196 (390)
T ss_pred cccCcchhhhhhhhhheeeecCCCCEEEEecCCceE-------E-EEec----Cc-ccchhhhccccHh----------h
Confidence 5321 18999999998843 333444 3 2355 33 334444 779999 8
Q ss_pred ceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeec----ccccccc----ceeEee--cCCceEEEEecCCCeEEe
Q 000378 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLD----NTIKLLG----AGAFAF--HPTLEWLFVGDRRGTLLA 228 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~----~~~~~~g----~~a~Af--~P~g~~l~~G~~dgtl~~ 228 (1605)
|-.+++-+..+ |.|||-|+++|+||+.+|..+=|+-+. +..|+.+ ...++| +-..-||-++..- +.+
T Consensus 197 VS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p--~~i 273 (390)
T KOG3914|consen 197 VSTISLTDNYL-LLSGSGDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTP--VVI 273 (390)
T ss_pred eeeeeeccCce-eeecCCCCcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCe--EEE
Confidence 99999998777 889999999999999999988555441 1112221 012222 2233333343333 566
Q ss_pred eecCCCCCeeeeeccceeEEE
Q 000378 229 WDVSIERPSMIGMDGSLQVWK 249 (1605)
Q Consensus 229 W~vs~~~~~m~g~~g~~~~w~ 249 (1605)
.+++..+.+.+=+-+..|||-
T Consensus 274 f~~~a~~~~~v~l~~~~qv~d 294 (390)
T KOG3914|consen 274 FGAEALPTSLVPLVSEVQVWD 294 (390)
T ss_pred EeecCCCceeEEEEeccccee
Confidence 666655555554555556664
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0029 Score=69.24 Aligned_cols=190 Identities=18% Similarity=0.152 Sum_probs=108.7
Q ss_pred CceeEeCC-Ccceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEeC
Q 000378 24 PHEAAFHP-NQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1605)
Q Consensus 24 v~~~aF~P-~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~s 101 (1605)
+++.+|.+ +|.++.+ -.+..|.-||..+++.... .... ...|++...+|.. +++.. ..+.++|+.+++..+.+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~-~~~~-~~G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI-DLPG-PNGMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-ESSS-EEEEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE-ecCC-CceEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEee
Confidence 47899999 9999999 4688999999988866543 3333 7888888436544 44444 444555998865433333
Q ss_pred C-Ccc-ccc------cccCceeEeccCCCcceEEeccccccc------eeEEeeeecCCCCcccccccCCCceEeeeecC
Q 000378 102 P-EKK-MES------ISVDTEVHLALTPLQPVVFFGFHRRMS------VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR 167 (1605)
Q Consensus 102 p-~~~-~~~------~s~d~~ih~a~t~~~l~vw~~~~~~~s------~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~ 167 (1605)
. ++. ... ...|+.+ |++-..... +.+. -+......+.+.+++..| ..|||+||
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~l-----------y~t~~~~~~~~~~~~g~v~-~~~~~~~~~~~~~~~~~p-NGi~~s~d 144 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNL-----------YVTDSGGGGASGIDPGSVY-RIDPDGKVTVVADGLGFP-NGIAFSPD 144 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-E-----------EEEEECCBCTTCGGSEEEE-EEETTSEEEEEEEEESSE-EEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCE-----------EEEecCCCccccccccceE-EECCCCeEEEEecCcccc-cceEECCc
Confidence 2 121 111 2333444 553222211 1111 233333334455555444 79999999
Q ss_pred CCeEEE-EecCceEEEEecc--cceEEE-EEeeccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 168 LPVLYV-AYADGLIRAYNIH--TYAVHY-TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 168 ~~vL~~-a~~dg~IR~w~i~--t~~v~~-tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
+..||+ -+..+.|..|++. ++++.. .+..+..--....-.+++..+|.+.++.-..+.|..++
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 999985 5778899999996 331221 11121111112356789999998766544455555444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=84.04 Aligned_cols=169 Identities=18% Similarity=0.274 Sum_probs=116.9
Q ss_pred cccccccc-cccc--cCCCCCCCCCceeEeCCCcc-eeee-ecCceEEEEeccCCce----eeeccCCcceeeeeecCCC
Q 000378 3 WATVQHLD-LRHV--GRGDHKPLQPHEAAFHPNQA-LIAV-AIGTYIIEFDTLTGSR----IASIDINSPVVRMAYSPTS 73 (1605)
Q Consensus 3 W~~~~~~~-l~~~--g~~~~~~~~v~~~aF~P~ga-llA~-a~g~~I~l~d~~tG~~----~~~l~~~~~v~~lA~SP~~ 73 (1605)
|+++.+.- ||.. .|.+ -|-++.|||+-. +|++ |+|..|-+||....-. +.+++++++|.+++|.-..
T Consensus 148 wDvR~~qq~l~~~~eSH~D----DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 148 WDVRSEQQLLRQLNESHND----DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EEeccccchhhhhhhhccC----cceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 77776644 7777 6888 899999999764 6666 9999999999775543 3448999999999999623
Q ss_pred CceEEEEecCCcEEeeccCCCc-------e----------------EEEeCCCccccccccCceeEeccCC---CcceEE
Q 000378 74 GHAVVAILEDCTIRSCDFDTEQ-------S----------------FVLHSPEKKMESISVDTEVHLALTP---LQPVVF 127 (1605)
Q Consensus 74 g~~laa~~~D~tI~~wd~~~~q-------~----------------~v~~sp~~~~~~~s~d~~ih~a~t~---~~l~vw 127 (1605)
=..|-...++.+.+.|++.+.. + -=.|+|.++ .+.|+|.|- .+..++
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~-------~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK-------DTCALAGTDSNKGTIFPL 296 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc-------ceEEEeccccCceeEEEe
Confidence 3679999999999999998842 1 123445444 344444441 233222
Q ss_pred eccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEE
Q 000378 128 FGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 128 ~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~ 191 (1605)
+-.-.....+.+..++| -++.=||++-|--.+-+||+|++||.+.+|-++.....
T Consensus 297 ~~~~s~~~~~~~a~l~g---------~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e~ 351 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQG---------GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATEI 351 (376)
T ss_pred eecccccccCccccccC---------CcHHHHHHHhhhcccceeeccCCCceEEEEecCCcccc
Confidence 21111222333333555 33447888888888899999999999999998665554
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00042 Score=79.62 Aligned_cols=183 Identities=14% Similarity=0.151 Sum_probs=120.4
Q ss_pred eEEEEeccCCceeee-----ccCCcceeeeeec--CCCCc-eEEEEecCCcEEeeccCC-C-----------------ce
Q 000378 43 YIIEFDTLTGSRIAS-----IDINSPVVRMAYS--PTSGH-AVVAILEDCTIRSCDFDT-E-----------------QS 96 (1605)
Q Consensus 43 ~I~l~d~~tG~~~~~-----l~~~~~v~~lA~S--P~~g~-~laa~~~D~tI~~wd~~~-~-----------------q~ 96 (1605)
.+.+||..--+.+.. ++ .+.+.-|-|+ +++|+ .++-+-.+|.|-+.-.+- + ..
T Consensus 47 kl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred ceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 467777654333331 11 1234555566 88998 677777788887765543 1 11
Q ss_pred EEEeCCCccccccccC-ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC-CeEEEE
Q 000378 97 FVLHSPEKKMESISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVLYVA 174 (1605)
Q Consensus 97 ~v~~sp~~~~~~~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~-~vL~~a 174 (1605)
++-+++-|+.+..|.+ +.+| +|-+ .++-..-|++.++|-- +.|-.+|+-.. -++|+|
T Consensus 126 slD~~~~~~~i~vs~s~G~~~--------~v~~---t~~~le~vq~wk~He~----------E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSIS--------GVYE---TEMVLEKVQTWKVHEF----------EAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred EEEeeccCceEEEEcCCCcEE--------EEec---ceeeeeecccccccce----------eeeeeecccCCCceEEec
Confidence 5667777776643322 5664 1111 1333345667889988 99999999333 599999
Q ss_pred ecCceEEEEecccceEEEEEeeccccccccceeEeecCC-ceEEEEecCCCeEEeeecC-CCCCeeeee-ccceeEEEEE
Q 000378 175 YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVS-IERPSMIGM-DGSLQVWKTR 251 (1605)
Q Consensus 175 ~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~-g~~l~~G~~dgtl~~W~vs-~~~~~m~g~-~g~~~~w~~r 251 (1605)
++|+.++.||+-- +.=-++-|+-+|..||.++-=+|- +-.|+||+-|-.|+.||.- ..+|---+= .|+ |||.-
T Consensus 185 gDD~~l~~~D~R~--p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG--VWRi~ 260 (339)
T KOG0280|consen 185 GDDGSLSCWDIRI--PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG--VWRIK 260 (339)
T ss_pred CCCceEEEEEecC--CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccc--eEEEE
Confidence 9999999999982 111345578889999999988765 6788899999999999976 333322211 244 78764
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=87.16 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=125.9
Q ss_pred eeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC------c-----eEEEeCC
Q 000378 35 LIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE------Q-----SFVLHSP 102 (1605)
Q Consensus 35 llA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~------q-----~~v~~sp 102 (1605)
++.++-|+.+.+.. ..|+...+ -.|++.|-+=-||| ||.-|++..+||-||.|-..-- | .||++-|
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 34446666777777 55676666 78999999999999 9989999999999999987541 1 1999999
Q ss_pred CccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEE
Q 000378 103 EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRA 182 (1605)
Q Consensus 103 ~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~ 182 (1605)
+...+--+.++ ||...||++ -.+++ --..|-. =|-++-++|..-.+++|++|=-.++
T Consensus 156 ~S~~vl~c~g~--h~~IKpL~~----------n~k~i-~WkAHDG----------iiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 156 NSNSIVFCQGG--HISIKPLAA----------NSKII-RWRAHDG----------LVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred CCCceEEecCC--eEEEeeccc----------cccee-EEeccCc----------EEEEeecCccccceeecCCceeEEe
Confidence 99877644443 778888776 13333 3456776 7888999999999999999999999
Q ss_pred EecccceEEEEEeeccccccccceeEeecCCceEEEEecC
Q 000378 183 YNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1605)
Q Consensus 183 w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~ 222 (1605)
||-+ |+++|+-+. |--.+.++||.|| +..++||.
T Consensus 213 WD~~-G~~Lf~S~~----~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 213 WDAQ-GANLFTSAA----EEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred eccc-CcccccCCh----hccceeeeeeccc-cceeeeee
Confidence 9975 889998888 9999999999999 66668885
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0018 Score=75.43 Aligned_cols=193 Identities=18% Similarity=0.159 Sum_probs=134.2
Q ss_pred ccccc-cCCCCCCCCCceeEeCCCcceeeeecC------ceEEEEecc-CCceeee-ccCCcceeeeeecCCCCceEEEE
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIG------TYIIEFDTL-TGSRIAS-IDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g------~~I~l~d~~-tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
+=||+ ||++ |||||++|-+.-+ ..|-+||+. +=.++.. -.++=.=+-|.+.| ||.+||++
T Consensus 48 ~gRHFyGHg~----------fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVA 116 (305)
T PF07433_consen 48 PGRHFYGHGV----------FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVA 116 (305)
T ss_pred CCCEEecCEE----------EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEE
Confidence 44677 7777 9999999998543 469999999 5555555 33333447888999 88777775
Q ss_pred e-------cCCcEEeeccCCCceEEEeC--CCccccc---cc-cC---ceeEeccCCCcceEEecccccc----ceeEEe
Q 000378 81 L-------EDCTIRSCDFDTEQSFVLHS--PEKKMES---IS-VD---TEVHLALTPLQPVVFFGFHRRM----SVTVVG 140 (1605)
Q Consensus 81 ~-------~D~tI~~wd~~~~q~~v~~s--p~~~~~~---~s-~d---~~ih~a~t~~~l~vw~~~~~~~----s~~~vg 140 (1605)
- +.+.-|+ |++|=|+++.|- .+|+.+. .. .+ .-=|||+.+--- ||+|.+-.- ..-.|+
T Consensus 117 NGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva 194 (305)
T PF07433_consen 117 NGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVA 194 (305)
T ss_pred cCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEE
Confidence 3 1245555 677767766665 7777665 22 23 344888888543 688877544 455677
Q ss_pred eeecCCCCcccc------cccCCCceEeeeecCCCeEEEEe-cCceEEEEecccceEEEEEeeccccccccceeEeecCC
Q 000378 141 TVEGGRAPTKIK------TDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT 213 (1605)
Q Consensus 141 t~eG~~~~~~ik------~d~kkpV~~LA~~P~~~vL~~a~-~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~ 213 (1605)
+..++.+++-+. ..|+-=|-|+|+++++.++++.| --|.+-+||..||+.+-.. .+.-+..+|-.++
T Consensus 195 ~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~------~l~D~cGva~~~~ 268 (305)
T PF07433_consen 195 LHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV------PLPDACGVAPTDD 268 (305)
T ss_pred EEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc------ccCceeeeeecCC
Confidence 777777654443 46777899999999998775555 5678899999999998333 3466778888888
Q ss_pred ceEEEEecC
Q 000378 214 LEWLFVGDR 222 (1605)
Q Consensus 214 g~~l~~G~~ 222 (1605)
+ ++++.+.
T Consensus 269 ~-f~~ssG~ 276 (305)
T PF07433_consen 269 G-FLVSSGQ 276 (305)
T ss_pred c-eEEeCCC
Confidence 8 5554333
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00095 Score=77.48 Aligned_cols=192 Identities=15% Similarity=0.100 Sum_probs=138.4
Q ss_pred CCCceeEeCCCcceeeeecCc-eEEEEeccCCc---eeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeecc-CCC-
Q 000378 22 LQPHEAAFHPNQALIAVAIGT-YIIEFDTLTGS---RIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF-DTE- 94 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~a~g~-~I~l~d~~tG~---~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~-~~~- 94 (1605)
..+-|-||++|+..+|++.++ .|-+|.-+... +..+ -+|+..|.-+.++| -+..|+.+++|.-=++|.. .+.
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCCe
Confidence 467899999999999996655 55555544333 4445 89999999999999 7889999999999999999 442
Q ss_pred -------------ceEEEeCCCccccccccC-ceeEeccCCCcceEEeccccccceeEEeeeecCCCC---cccccccCC
Q 000378 95 -------------QSFVLHSPEKKMESISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP---TKIKTDLKK 157 (1605)
Q Consensus 95 -------------q~~v~~sp~~~~~~~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~---~~ik~d~kk 157 (1605)
.+||-.+|..-..++.++ ..| =|| ++|+.-+= --||.-++.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i---------sVc-------------y~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI---------SVC-------------YYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEE---------EEE-------------EEecccceehhhhhCCcccc
Confidence 229999999999996555 444 123 35555541 114444555
Q ss_pred CceEeeeecCCCeEEEEecCceEEEEeccc----ceEEEEEeeccc----------cccccceeEeecCCceEEEEecCC
Q 000378 158 PIVNLACHPRLPVLYVAYADGLIRAYNIHT----YAVHYTLQLDNT----------IKLLGAGAFAFHPTLEWLFVGDRR 223 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t----~~v~~tL~~~~~----------~~~~g~~a~Af~P~g~~l~~G~~d 223 (1605)
-|.+|..||..-+|++||.|+-.|.+..== -.+..+.++.++ ---+++..+.|+|.|..|+=-++|
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 588999999999999999999999875310 011112222100 122477899999999999977899
Q ss_pred CeEEeeecCCCCC
Q 000378 224 GTLLAWDVSIERP 236 (1605)
Q Consensus 224 gtl~~W~vs~~~~ 236 (1605)
.++.+=|-.-+++
T Consensus 228 s~v~~~da~~p~~ 240 (361)
T KOG1523|consen 228 STVSFVDAAGPSE 240 (361)
T ss_pred CceEEeecCCCch
Confidence 9999988875543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0057 Score=65.24 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=107.8
Q ss_pred CceEEEEeccCCceeeeccCCcceeeeeecCC-CCceEEEEecCCcEEeeccCCCceEEEeCCCccccc--cccCceeEe
Q 000378 41 GTYIIEFDTLTGSRIASIDINSPVVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMES--ISVDTEVHL 117 (1605)
Q Consensus 41 g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~-~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~--~s~d~~ih~ 117 (1605)
+.+|.-||+.||+++=...+..........+. ++..|.++..++.|+.||..|++..--++.++.... .-.++.|=+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v 81 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV 81 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence 46899999999999999665433333332222 445666668999999999999876555554444332 234445523
Q ss_pred ccCCCcceEEeccccccceeEEeee-ecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEee
Q 000378 118 ALTPLQPVVFFGFHRRMSVTVVGTV-EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL 196 (1605)
Q Consensus 118 a~t~~~l~vw~~~~~~~s~~~vgt~-eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~ 196 (1605)
+...=+++.|+ ..+++++=.+ ....+... -...++...++..++++..++.|.++|+.||+++.....
T Consensus 82 ~~~~~~l~~~d----~~tG~~~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 82 GTSDGSLYALD----AKTGKVLWSIYLTSSPPAG-------VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EETTSEEEEEE----TTTSCEEEEEEE-SSCTCS-------TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccceeeeEecc----cCCcceeeeeccccccccc-------cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 32222345566 6677776553 33322111 122344445588999999999999999999999887766
Q ss_pred cc-ccc-----cc-cceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 197 DN-TIK-----LL-GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 197 ~~-~~~-----~~-g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
.. ... .. ..+...++ ++ .+++.+.+|.+..+|+.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTE
T ss_pred CCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCC
Confidence 22 100 00 12334444 44 66666666653333666543
|
... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0003 Score=93.52 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=128.1
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC----
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE---- 94 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~---- 94 (1605)
.|.+..=||.-.+-.+ |-|.-|+.|.--.|..+-+ .+. +.|.|+.|+- .|.....+..||-|-+|+..-.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk~~~s 2287 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPKPYTS 2287 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc-cCCceeeeccCCceeecccCCcceec
Confidence 6778888999888888 8888999888777777766 566 9999999999 5557788889999999998732
Q ss_pred -ce------EEEeCCCcccccc-ccC-ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 95 -QS------FVLHSPEKKMESI-SVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 95 -q~------~v~~sp~~~~~~~-s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
|- -+.|---+.+-++ |+| +.+ .+ |+ |+-.|... -|-|-|.-.+++||+-
T Consensus 2288 ~qchnk~~~Df~Fi~s~~~tag~s~d~~n~-------~l--wD------------tl~~~~~s-~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIGSLLATAGRSSDNRNV-------CL--WD------------TLLPPMNS-LVHTCHDGGATVLAYA 2345 (2439)
T ss_pred cccCCccccceeeeehhhhccccCCCCCcc-------cc--hh------------cccCcccc-eeeeecCCCceEEEEc
Confidence 11 3333334444443 444 666 66 76 32222221 1224455588999999
Q ss_pred cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
|+.++|.+|+-+|-|.+|||...+..-|.|- .+ +-+.+++|+.+|.|+||++++.
T Consensus 2346 P~~qllisggr~G~v~l~D~rqrql~h~~~~-------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcceEEEecCCcCcEEEeehHHHHHHHHhhh-------------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999999999999999988776633333 55 6677789999999999999864
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00031 Score=85.24 Aligned_cols=194 Identities=22% Similarity=0.295 Sum_probs=130.3
Q ss_pred Cccccccccccccc--cCCCCCCCCCceeEeCC--Ccceeee-ecCceEEEEeccC--------Cceeee---ccCCcce
Q 000378 1 MEWATVQHLDLRHV--GRGDHKPLQPHEAAFHP--NQALIAV-AIGTYIIEFDTLT--------GSRIAS---IDINSPV 64 (1605)
Q Consensus 1 m~W~~~~~~~l~~~--g~~~~~~~~v~~~aF~P--~gallA~-a~g~~I~l~d~~t--------G~~~~~---l~~~~~v 64 (1605)
|-|+...++.+-.+ ||.. -+-|+-|=| +-+++++ |.|+.|+|||... |-++.+ ..|...|
T Consensus 75 ivWd~~~~KllhsI~TgHta----NIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 75 IVWDPFEYKLLHSISTGHTA----NIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV 150 (758)
T ss_pred Eeecchhcceeeeeeccccc----ceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence 35887766666555 7888 899999987 4678888 9999999999763 455555 6778889
Q ss_pred eeeeecCCCC-ceEEEEecCCcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeee
Q 000378 65 VRMAYSPTSG-HAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 65 ~~lA~SP~~g-~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
-+||-.| ++ |++-+.++|||||=.|+---+.| .|++ ++|.-++...+- .+
T Consensus 151 Kria~~p-~~PhtfwsasEDGtirQyDiREph~c---~p~~---------~~~~~l~ny~~~------------li---- 201 (758)
T KOG1310|consen 151 KRIATAP-NGPHTFWSASEDGTIRQYDIREPHVC---NPDE---------DCPSILVNYNPQ------------LI---- 201 (758)
T ss_pred hheecCC-CCCceEEEecCCcceeeecccCCccC---Cccc---------cccHHHHHhchh------------hh----
Confidence 9999999 55 99999999999999999432222 2332 343333333330 01
Q ss_pred cCCCCcccccccCCCceEeeeecCCC-eEEEEecCceEEEEec--------ccce-----------EEEEEee-------
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNI--------HTYA-----------VHYTLQL------- 196 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i--------~t~~-----------v~~tL~~------- 196 (1605)
-..+|+.+|+.| .|++|..|--+|+||+ .+++ |.|---+
T Consensus 202 --------------elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 202 --------------ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred --------------eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 345788887666 6889999999999993 1111 3332222
Q ss_pred ccccccccceeEeecCCceEEEEecCCCeEEeeecCC---CCCeeeee
Q 000378 197 DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI---ERPSMIGM 241 (1605)
Q Consensus 197 ~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~---~~~~m~g~ 241 (1605)
+.+----++.-++|+|+|+-|.|-=-.--+.+.||.. ..|...+|
T Consensus 268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~~ 315 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLPI 315 (758)
T ss_pred ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCcc
Confidence 1111112467889999996666444445689999994 44455565
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0007 Score=76.95 Aligned_cols=262 Identities=19% Similarity=0.262 Sum_probs=154.9
Q ss_pred ccccccccccccc-cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccCCceeeec---cCCcceeeeeec--C---C
Q 000378 2 EWATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASI---DINSPVVRMAYS--P---T 72 (1605)
Q Consensus 2 ~W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l---~~~~~v~~lA~S--P---~ 72 (1605)
||.+.+- ++-.+ ++.+ +-+..+.|+-+-.++-.--+.+|..+..-+|..++-. .-..+-.-+|++ | +
T Consensus 20 ~~~~~t~-~vD~i~~~~d---~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~ 95 (319)
T KOG4714|consen 20 EVGSSTP-LVDEIMQHAD---VKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPND 95 (319)
T ss_pred eeeccCc-chhhcccccc---eEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcc
Confidence 3545553 55555 4555 2377888887776665555557777777777777662 233344556666 2 1
Q ss_pred ----CCceEEEEecCCcEEeeccCC-CceEEEeCCCccccccccC-ceeE---eccCCCcceEEeccccccceeEEeeee
Q 000378 73 ----SGHAVVAILEDCTIRSCDFDT-EQSFVLHSPEKKMESISVD-TEVH---LALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 73 ----~g~~laa~~~D~tI~~wd~~~-~q~~v~~sp~~~~~~~s~d-~~ih---~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
-+.-++.+-+|+.+-..+.+. .|. -+-=+.+.++ +.+ ..+| +=++| +--+||. ..--.+-++.
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~--~~~i~~~~~~-~as~~~~~~~~~i~s~-~~g~~n~----~d~~~a~~~~ 167 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLAL--MSRIPSIHSG-SASRKICRHGNSILSG-GCGNWNA----QDNFYANTLD 167 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHhh--hhhccccccc-ccccceeecccEEecC-CcceEee----ccceeeeccc
Confidence 134567777888777666544 111 0000111111 111 1111 11222 2235662 2111111233
Q ss_pred cCCCCcccccccCCCceEeeeec-CCCeEEEEecCceEEEEecccceEEE-EEeeccccccccceeEeecC-CceEEEEe
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHY-TLQLDNTIKLLGAGAFAFHP-TLEWLFVG 220 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~i~t~~v~~-tL~~~~~~~~~g~~a~Af~P-~g~~l~~G 220 (1605)
.-+..---|.+++. |.+|+=|| +..++..|+.||.|-+||..+.+... +|.. |-..+.-+-||| +++.|||.
T Consensus 168 p~~t~~~~~~~~~~-v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a----hk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 168 PIKTLIPSKKALDA-VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA----HKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred cccccccccccccc-chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH----hhhhhhheeccCCCchheeEe
Confidence 33332233456666 99999996 56788899999999999999996543 4555 888889999999 79999999
Q ss_pred cCCCeEEeeecCCCCCeeeeecc---ceeEE------EEEEeeCCCCCcccccccccCCcccccc--ceeeccCCCccee
Q 000378 221 DRRGTLLAWDVSIERPSMIGMDG---SLQVW------KTRVIINPNRPPMQANFFEPASIESIDI--PRILSQQGGEAVY 289 (1605)
Q Consensus 221 ~~dgtl~~W~vs~~~~~m~g~~g---~~~~w------~~rv~~~~~~~~~~a~~~~~a~~es~d~--~~il~~~~g~~vy 289 (1605)
+.||.|-.||.++ ..+||+- ..--| |-|+-+.|=.|+-. -.|.|+|| |++.--..-|+||
T Consensus 243 sedGslw~wdas~---~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~------~SinsfDV~g~~lVcgtd~eaIy 313 (319)
T KOG4714|consen 243 SEDGSLWHWDAST---TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRS------LSINSFDVLGPCLVCGTDAEAIY 313 (319)
T ss_pred cCCCcEEEEcCCC---ceEEecCccccccccccCCcccceEeeeccccccc------eeeeeeeccCceEEeccccceEE
Confidence 9999999999987 4566631 23334 45666666665533 34677776 3443334446666
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0031 Score=82.71 Aligned_cols=221 Identities=20% Similarity=0.273 Sum_probs=134.2
Q ss_pred CCceeEeCCCcceeee-ecCceEEE----EeccCCceeee----------------------------------------
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIE----FDTLTGSRIAS---------------------------------------- 57 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l----~d~~tG~~~~~---------------------------------------- 57 (1605)
.+.|++||||+.+||. ..+.++.+ ||+.....+..
T Consensus 122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~ 201 (928)
T PF04762_consen 122 GILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV 201 (928)
T ss_pred cEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence 6899999999999999 33335443 44433222221
Q ss_pred ----ccCCcceeeeeecCCCCceEEEEec---C---CcEEeeccCCC-----------ceEEEeCCCccccccccC-cee
Q 000378 58 ----IDINSPVVRMAYSPTSGHAVVAILE---D---CTIRSCDFDTE-----------QSFVLHSPEKKMESISVD-TEV 115 (1605)
Q Consensus 58 ----l~~~~~v~~lA~SP~~g~~laa~~~---D---~tI~~wd~~~~-----------q~~v~~sp~~~~~~~s~d-~~i 115 (1605)
+.....-++|+|-. ||..+|+.+- + -.||.||++-+ +.++++.|.|..||.+.. ..-
T Consensus 202 d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 202 DEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred ccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC
Confidence 11233557788888 9988887774 4 48999999832 228999999999985322 111
Q ss_pred EeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEE--EE
Q 000378 116 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH--YT 193 (1605)
Q Consensus 116 h~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~--~t 193 (1605)
.-|||| -.-+..=|-|.=-- ..-...|.+|++++|+.+||+-..|. |.+|.+.||-=- ..
T Consensus 281 -------~~VvFf----ErNGLrhgeF~l~~------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 281 -------HDVVFF----ERNGLRHGEFTLRF------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred -------cEEEEE----ecCCcEeeeEecCC------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 245677 33333333221110 01223789999999999999999666 999999999532 12
Q ss_pred EeeccccccccceeEeecCCc-eEEEEecCCCeEE----eeecCCC------CCeeeee-cc-ceeEEEEEEeeCCCCCc
Q 000378 194 LQLDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLL----AWDVSIE------RPSMIGM-DG-SLQVWKTRVIINPNRPP 260 (1605)
Q Consensus 194 L~~~~~~~~~g~~a~Af~P~g-~~l~~G~~dgtl~----~W~vs~~------~~~m~g~-~g-~~~~w~~rv~~~~~~~~ 260 (1605)
+.. -...+...+.|||.- ..|.++..+|.+. .|++... ..++++. || +|.+=-.|..+=| ||
T Consensus 343 i~~---~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP--PP 417 (928)
T PF04762_consen 343 IRF---SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP--PP 417 (928)
T ss_pred EEc---cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC--ch
Confidence 222 012234459999954 4466888777775 4555532 2234544 77 4554333333322 67
Q ss_pred ccccccc
Q 000378 261 MQANFFE 267 (1605)
Q Consensus 261 ~~a~~~~ 267 (1605)
|.+.-++
T Consensus 418 Ms~~~l~ 424 (928)
T PF04762_consen 418 MSSYELE 424 (928)
T ss_pred HhceEEc
Confidence 8665443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0013 Score=80.60 Aligned_cols=181 Identities=16% Similarity=0.209 Sum_probs=131.6
Q ss_pred ccCCcceeeeeecCCCC-ceEEEEecCCcEEeeccCCCce---------------------EEEeCCCccccccccCcee
Q 000378 58 IDINSPVVRMAYSPTSG-HAVVAILEDCTIRSCDFDTEQS---------------------FVLHSPEKKMESISVDTEV 115 (1605)
Q Consensus 58 l~~~~~v~~lA~SP~~g-~~laa~~~D~tI~~wd~~~~q~---------------------~v~~sp~~~~~~~s~d~~i 115 (1605)
++++..-++|--|| || =.+|+|-+-=.||.+|+..=.. -++|-...|+|..-+-.-.
T Consensus 48 fe~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 48 FEMPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred cCCccccceeEecC-CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 67888889999999 66 6788899999999999987211 1223333444432111111
Q ss_pred EeccC------------CCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEE
Q 000378 116 HLALT------------PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAY 183 (1605)
Q Consensus 116 h~a~t------------~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w 183 (1605)
|-.+. |.+- ++.|.. -.++..+ ++|-|+=.+-.++|- -+|+++-..|-+++|++|..||.|.+|
T Consensus 127 hy~~RIP~~GRDm~y~~~scD-ly~~gs-g~evYRl-NLEqGrfL~P~~~~~-~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCD-LYLVGS-GSEVYRL-NLEQGRFLNPFETDS-GELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eeeeecCcCCccccccCCCcc-EEEeec-CcceEEE-Ecccccccccccccc-ccceeeeecCccceEEecccCceEEEe
Confidence 21111 1110 011000 1145555 788888888888887 589999999999999999999999999
Q ss_pred ecccceEEEEEeeccccc--ccc-----ceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeecc
Q 000378 184 NIHTYAVHYTLQLDNTIK--LLG-----AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMDG 243 (1605)
Q Consensus 184 ~i~t~~v~~tL~~~~~~~--~~g-----~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g 243 (1605)
|--+-...-+|...++|. -.+ |.|+.|+-+|=.++||.+.|.++|+|+-..+|.||-=+|
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 999998888888866643 233 899999999999999999999999999999999987643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0074 Score=69.99 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=108.5
Q ss_pred CcceeeeecCceEEEEeccCCceeeeccCCccee-eeeecCCCCceEEEEecCCcEEeeccCCCceEEEeCCCccccc--
Q 000378 32 NQALIAVAIGTYIIEFDTLTGSRIASIDINSPVV-RMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMES-- 108 (1605)
Q Consensus 32 ~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~-~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~-- 108 (1605)
++.+++.+.+..|.-||+.||+++=.......+. ..+. ++..|.+++.|+.++.+|..|++..--+.-++....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 6666666888899999999999986644444331 2221 346788899999999999988654222222221111
Q ss_pred cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccc
Q 000378 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188 (1605)
Q Consensus 109 ~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~ 188 (1605)
+-.|+.+.+....-++..|+ ..+++++-..+...+...+.. ..+.+.. + ..+++++.+|.+.++|..||
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d----~~tG~~~W~~~~~~~~~~~~~-----~~sp~~~-~-~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALD----AATGERLWTYSRVTPALTLRG-----SASPVIA-D-GGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred EEECCEEEEECCCCeEEEEE----cCCCceeeEEccCCCceeecC-----CCCCEEE-C-CEEEEECCCCEEEEEEccCC
Confidence 11122232222112223355 445555433332222000000 0111111 2 47889999999999999999
Q ss_pred eEEEEEeeccc-----cc-cccc-eeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEE
Q 000378 189 AVHYTLQLDNT-----IK-LLGA-GAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTR 251 (1605)
Q Consensus 189 ~v~~tL~~~~~-----~~-~~g~-~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~r 251 (1605)
+..++...... ++ ...+ .+..+ ++..+++++.+|.+.+||..+- -++|+..
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG----------~~~W~~~ 268 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG----------RVLWKRD 268 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC----------cEEEeec
Confidence 98875443100 00 0000 11112 3567888999999999998532 2579875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0053 Score=80.19 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=121.2
Q ss_pred Cccccccccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccC-----Cceeee--c-cCCcceeeeeec
Q 000378 1 MEWATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLT-----GSRIAS--I-DINSPVVRMAYS 70 (1605)
Q Consensus 1 m~W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~t-----G~~~~~--l-~~~~~v~~lA~S 70 (1605)
|-|..+- ..+.|+ -|.. +-..-++=+|++-++++ |.|++||+||... |.-.+. . -.+.+|..+.+=
T Consensus 1032 ~gW~p~G-~lVAhL~Ehs~---~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1032 PGWNPRG-ILVAHLHEHSS---AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCCCccc-eEeehhhhccc---cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 3476665 778888 3333 23344455667799999 9999999999641 222222 1 144556555555
Q ss_pred CCCCceEEEEecCCcEEeeccCC-Cce--------------------EEEeCCCccc--cccccC-ceeEe---------
Q 000378 71 PTSGHAVVAILEDCTIRSCDFDT-EQS--------------------FVLHSPEKKM--ESISVD-TEVHL--------- 117 (1605)
Q Consensus 71 P~~g~~laa~~~D~tI~~wd~~~-~q~--------------------~v~~sp~~~~--~~~s~d-~~ih~--------- 117 (1605)
+ .|+.+|.+..||.|+.-+++- ++. +.+|.-+-++ +..+.+ +.||.
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 6 778899999999999888876 211 2222222221 000111 11211
Q ss_pred ---------------ccCCCcc-----------eEEeccccccceeEEee-eecCCCCcccccccCCCceEeeeecCCC-
Q 000378 118 ---------------ALTPLQP-----------VVFFGFHRRMSVTVVGT-VEGGRAPTKIKTDLKKPIVNLACHPRLP- 169 (1605)
Q Consensus 118 ---------------a~t~~~l-----------~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~d~kkpV~~LA~~P~~~- 169 (1605)
+..|-+- +.|+ .-=+..|-- =.+++. ||+-|.++|=-|
T Consensus 1187 w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWD----LRF~~~i~sw~~P~~~----------~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWD----LRFRVPILSWEHPARA----------PIRHVWLCPTYPQ 1252 (1431)
T ss_pred HhhhcCccccceeEEEecCCceEEEEecCCceEEEEE----eecCceeecccCcccC----------CcceEEeeccCCC
Confidence 1222222 1232 111111110 234444 999999994333
Q ss_pred --eEEE-Ee-cCceEEEEecccceEEEEEeec-c--c------------cccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 170 --VLYV-AY-ADGLIRAYNIHTYAVHYTLQLD-N--T------------IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 170 --vL~~-a~-~dg~IR~w~i~t~~v~~tL~~~-~--~------------~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
+..+ ++ -.+-|-.||+.+|--+++|+.- . . =+..-.+.-++.--+-.+.+|+.|+.|+.||
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 4444 44 5788999999999999999983 0 0 0111112223333344566899999999999
Q ss_pred cCC
Q 000378 231 VSI 233 (1605)
Q Consensus 231 vs~ 233 (1605)
.+.
T Consensus 1333 ~~~ 1335 (1431)
T KOG1240|consen 1333 PTR 1335 (1431)
T ss_pred CCC
Confidence 873
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0019 Score=74.97 Aligned_cols=161 Identities=12% Similarity=0.179 Sum_probs=114.7
Q ss_pred CccccccccccccccCCCCCCCCCceeEeCCCcceeeeecCceEEEEecc-CCceeee---ccCCcceeeeeecCCCCce
Q 000378 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTL-TGSRIAS---IDINSPVVRMAYSPTSGHA 76 (1605)
Q Consensus 1 m~W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~-tG~~~~~---l~~~~~v~~lA~SP~~g~~ 76 (1605)
|=|+=.+.+.+-.+-... .|.++.++++ .|++-....|.+|.-- .=+++.. ...+.. -++++|.....
T Consensus 78 iIWDD~k~~~i~el~f~~----~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG--lC~~~~~~~k~ 149 (346)
T KOG2111|consen 78 IIWDDLKERCIIELSFNS----EIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG--LCSLCPTSNKS 149 (346)
T ss_pred EEEecccCcEEEEEEecc----ceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCc--eEeecCCCCce
Confidence 447644445555554444 6888888876 6777788899999654 2234444 333444 44556655544
Q ss_pred EEE--EecCCcEEeeccCC-Cc--e-----------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEE
Q 000378 77 VVA--ILEDCTIRSCDFDT-EQ--S-----------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVV 139 (1605)
Q Consensus 77 laa--~~~D~tI~~wd~~~-~q--~-----------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~v 139 (1605)
+.| |..-|.|.+-|+.. +. + ||+-+-+|..+|. |.-||+ .|. |+ ..+++.+
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL------IRI--Fd----t~~g~~l 217 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL------IRI--FD----TEDGTLL 217 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE------EEE--EE----cCCCcEe
Confidence 444 55668899999876 32 1 9999999999995 666665 377 99 8888888
Q ss_pred eeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccce
Q 000378 140 GTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1605)
Q Consensus 140 gt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~ 189 (1605)
.-+.-|.+ +--|-++||||++.+||++|+-||+-++.+..-.
T Consensus 218 ~E~RRG~d--------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 218 QELRRGVD--------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eeeecCCc--------hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 77766666 3368999999999999999999999888877644
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=75.84 Aligned_cols=188 Identities=13% Similarity=0.206 Sum_probs=138.5
Q ss_pred CCCCCceeEeCCCcc-----eeeeecCceEEEEeccCC-------ceeee---ccCCcceeeeeecCCCCceEEEEecCC
Q 000378 20 KPLQPHEAAFHPNQA-----LIAVAIGTYIIEFDTLTG-------SRIAS---IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 20 ~~~~v~~~aF~P~ga-----llA~a~g~~I~l~d~~tG-------~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
-|..|..+-|.||+. +||++.| ..+||-+.+. +.+.. -.+++|..+.-++-.|-..|.+-+-|-
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCccceEecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 466899999999994 8888777 8999987641 11222 578999999999966779999999999
Q ss_pred cEEeeccCCC-----ce----------EEEeCCCccccc--cccCceeEeccCCCcceEEeccccccceeEEeeeecCCC
Q 000378 85 TIRSCDFDTE-----QS----------FVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1605)
Q Consensus 85 tI~~wd~~~~-----q~----------~v~~sp~~~~~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~ 147 (1605)
|--.||+.++ +| -|+|+-.++-.= .+.||.| |. |. -|...-..+ .-|+-.+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv-------Rm--FD--LR~leHSTI-IYE~p~~ 241 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSV-------RM--FD--LRSLEHSTI-IYEDPSP 241 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcE-------EE--EE--ecccccceE-EecCCCC
Confidence 9999999996 22 677777555443 5888999 77 66 223333334 4555543
Q ss_pred CcccccccCCCceEeeeecCCC-eEEEEec-CceEEEEeccc-ceEEEEEeeccccccccceeEeecCCce-EEEEecCC
Q 000378 148 PTKIKTDLKKPIVNLACHPRLP-VLYVAYA-DGLIRAYNIHT-YAVHYTLQLDNTIKLLGAGAFAFHPTLE-WLFVGDRR 223 (1605)
Q Consensus 148 ~~~ik~d~kkpV~~LA~~P~~~-vL~~a~~-dg~IR~w~i~t-~~v~~tL~~~~~~~~~g~~a~Af~P~g~-~l~~G~~d 223 (1605)
+.|.--|+..+..| ++|+=-. ..-|-+-||-. ..+..+|+. |-+.|.++|++|+-. .|.++++|
T Consensus 242 --------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~----H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 242 --------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN----HQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred --------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc----CcccccceEecCCCCceeeecCCc
Confidence 45888899986554 4443222 23355678765 455669999 999999999999865 66699999
Q ss_pred CeEEeeecC
Q 000378 224 GTLLAWDVS 232 (1605)
Q Consensus 224 gtl~~W~vs 232 (1605)
--.++||+.
T Consensus 310 ~qaliWDl~ 318 (364)
T KOG0290|consen 310 CQALIWDLQ 318 (364)
T ss_pred ceEEEEecc
Confidence 999999998
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0029 Score=74.22 Aligned_cols=190 Identities=15% Similarity=0.242 Sum_probs=134.1
Q ss_pred CCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee-----ccCCcceeeeeecCCCCceEEEEecCCcEEeecc-CC
Q 000378 21 PLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-----IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF-DT 93 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-----l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~-~~ 93 (1605)
|-.+.+.++++.-+.|.+ =.+.+|++|-..-...-.+ +.|-++|.++-||- .-..+++...|..+- |-- ..
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~-~hc~e~ 145 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFA-WHCTES 145 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceE-EEeecc
Confidence 667999999999999999 5667999998765544333 88999999999993 124555666665442 211 11
Q ss_pred Cce---EEEeCCCc--ccccc---ccC--ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEee
Q 000378 94 EQS---FVLHSPEK--KMESI---SVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLA 163 (1605)
Q Consensus 94 ~q~---~v~~sp~~--~~~~~---s~d--~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA 163 (1605)
... ++.-+++- ..+.. =.| +.| |-+|. + .....++-|+.||.+ +|++|+
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv----t~lr~---~----~~~~~~i~~~~~h~~----------~~~~l~ 204 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQI----TMLKL---E----QNGCQLITTFNGHTG----------EVTCLK 204 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccce----EEEEE---e----ecCCceEEEEcCccc----------ceEEEE
Confidence 110 11111111 01100 111 111 11222 3 445566667999999 999999
Q ss_pred eecCCCeEEEEecCceEEEEecccce-EEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC---CCCCe
Q 000378 164 CHPRLPVLYVAYADGLIRAYNIHTYA-VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS---IERPS 237 (1605)
Q Consensus 164 ~~P~~~vL~~a~~dg~IR~w~i~t~~-v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs---~~~~~ 237 (1605)
.-|+..+|+||+.|..|-.|||--+. ..|-|++ |..-|+++-+-+.-+-|++.+.||-|-+||+. .|+|.
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g----h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpe 278 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG----HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPE 278 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeecc----chhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcc
Confidence 99999999999999999999996443 3458999 99999999999999999999999999999998 45554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00049 Score=82.84 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=73.6
Q ss_pred eecCCCCcccccccCCCceEeeee-cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEe
Q 000378 142 VEGGRAPTKIKTDLKKPIVNLACH-PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVG 220 (1605)
Q Consensus 142 ~eG~~~~~~ik~d~kkpV~~LA~~-P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G 220 (1605)
..||++. +-|.++-|- |+..++.|||+=|-|-+|+=++++.+--+.+|.- =|.|+-=||..=+|++-
T Consensus 387 YKGHrN~--------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~----VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 387 YKGHRNS--------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH----VVNCLEPHPHLPVLASS 454 (559)
T ss_pred hcccccc--------cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc----eEeccCCCCCCchhhcc
Confidence 7899983 346788888 9999999999999999999999999977888653 58999999999999999
Q ss_pred cCCCeEEeeec-CCCCCeee
Q 000378 221 DRRGTLLAWDV-SIERPSMI 239 (1605)
Q Consensus 221 ~~dgtl~~W~v-s~~~~~m~ 239 (1605)
+-|.-||||-- .++|.+--
T Consensus 455 Gid~DVKIWTP~~~er~~~~ 474 (559)
T KOG1334|consen 455 GIDHDVKIWTPLTAERATEP 474 (559)
T ss_pred CCccceeeecCCccccccCh
Confidence 99999999965 56665543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0037 Score=74.13 Aligned_cols=177 Identities=13% Similarity=0.113 Sum_probs=133.6
Q ss_pred CCcceeeeecCceEEEEeccCC----ceeeeccCCcceeeeeecCCCCceEEEEecC--CcEEeeccCC-CceEEEeC--
Q 000378 31 PNQALIAVAIGTYIIEFDTLTG----SRIASIDINSPVVRMAYSPTSGHAVVAILED--CTIRSCDFDT-EQSFVLHS-- 101 (1605)
Q Consensus 31 P~gallA~a~g~~I~l~d~~tG----~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D--~tI~~wd~~~-~q~~v~~s-- 101 (1605)
-||.++..--+..+.+|...-| +++.-+..++.+..|--.|++-+++|.|..- .-+++||+.+ .|..-|=+
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 3677777755558888876633 3455588999999999999888999999999 9999999988 45533333
Q ss_pred ------------------CC--cccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCce
Q 000378 102 ------------------PE--KKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV 160 (1605)
Q Consensus 102 ------------------p~--~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~ 160 (1605)
|. -..+++ ..=+.+ |+ ..--|.|. +|-.+.=. .-||.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv-------R~--YDt~~qRR---PV~~fd~~----------E~~is 251 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV-------RL--YDTRHQRR---PVAQFDFL----------ENPIS 251 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeE-------EE--ecCcccCc---ceeEeccc----------cCcce
Confidence 33 333332 222333 43 43222222 22222222 34899
Q ss_pred EeeeecCCCeEEEEecCceEEEEecccceEEE-EEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHY-TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~-tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+++.-|++-++|+|-.-|.+-.+|+.++..+- ++++ -.++++++--||+++.|++++-|+-+++.|+.+
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg----~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG----ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccCceeeccccCC----ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99999999999999999999999999999987 5888 788999999999999999999999999999987
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.002 Score=76.34 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=103.6
Q ss_pred CCceeEeCCCcceeeeecCce----EEEEeccCCceeee--------ccCCcce--eeeeecCC-CCceEEEEecCCcEE
Q 000378 23 QPHEAAFHPNQALIAVAIGTY----IIEFDTLTGSRIAS--------IDINSPV--VRMAYSPT-SGHAVVAILEDCTIR 87 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~----I~l~d~~tG~~~~~--------l~~~~~v--~~lA~SP~-~g~~laa~~~D~tI~ 87 (1605)
++-.+-=+|.-..+.+..|.. .++||.-++.+|=+ |++--|| ..+-|=|- .-..+|++..=+-+|
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 444555566667777755544 89999998877754 5666666 45566662 147899999999999
Q ss_pred eeccCCCce---EEEe----------CCCccccccccCceeEeccCCCcceEEeccccccceeEEee-eecCCCCccccc
Q 000378 88 SCDFDTEQS---FVLH----------SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPTKIKT 153 (1605)
Q Consensus 88 ~wd~~~~q~---~v~~----------sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~ 153 (1605)
++|...++. ++.| -|.|..+ -.+-|--++-.|+ ...++..|- +.|-+.
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~I--------y~gn~~g~l~~FD----~r~~kl~g~~~kg~tG------ 291 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFI--------YTGNTKGQLAKFD----LRGGKLLGCGLKGITG------ 291 (412)
T ss_pred EecCcccCcceeEeccccCcceeeeecCCCcEE--------EEecccchhheec----ccCceeeccccCCccC------
Confidence 999987533 3333 3444443 2222222333366 556666664 888888
Q ss_pred ccCCCceEeeeecCCCeEEEEecCceEEEEecccceEE
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 154 d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~ 191 (1605)
.|+++-|||.+|+|++++-|+-+|+||++|-..+
T Consensus 292 ----sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 292 ----SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ----CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999999999999999999999999996666
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=68.65 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=97.0
Q ss_pred CcceeeeecCceEEEEeccCCceeeeccCCcc-----eee---eeecCC-CCceEEEEecCCcEEeeccCCCceEEEeC-
Q 000378 32 NQALIAVAIGTYIIEFDTLTGSRIASIDINSP-----VVR---MAYSPT-SGHAVVAILEDCTIRSCDFDTEQSFVLHS- 101 (1605)
Q Consensus 32 ~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~-----v~~---lA~SP~-~g~~laa~~~D~tI~~wd~~~~q~~v~~s- 101 (1605)
++.+++...+..+.-+|+.||+.+-......+ ..+ +.-+|. .++.|.+++.|+.++.||..+.+..--+.
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 45555556677999999999988754222111 111 111231 34578888999999999998854311111
Q ss_pred -----C---CccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCC-CceEeeeecCCCeEE
Q 000378 102 -----P---EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK-PIVNLACHPRLPVLY 172 (1605)
Q Consensus 102 -----p---~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kk-pV~~LA~~P~~~vL~ 172 (1605)
| +++....+.|+.+|+ ++ ..+++.+-..+ ++.. .+.+.+. .+..||
T Consensus 270 ~~~~~p~~~~~~vyv~~~~G~l~~---------~d----~~tG~~~W~~~----------~~~~~~~ssp~i--~g~~l~ 324 (377)
T TIGR03300 270 SSYQGPAVDDNRLYVTDADGVVVA---------LD----RRSGSELWKND----------ELKYRQLTAPAV--VGGYLV 324 (377)
T ss_pred CCccCceEeCCEEEEECCCCeEEE---------EE----CCCCcEEEccc----------cccCCccccCEE--ECCEEE
Confidence 1 222222344555532 33 22332221111 0100 1111122 367999
Q ss_pred EEecCceEEEEecccceEEEEEeeccccccccc-eeEeecCCceEEEEecCCCeEEeee
Q 000378 173 VAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGA-GAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 173 ~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~-~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
+++.||.|.++|..+|+++.++.. +..++ .+-++. + +-|+++++||+|.+++
T Consensus 325 ~~~~~G~l~~~d~~tG~~~~~~~~----~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSFVARLKT----DGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEc----CCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 999999999999999999998886 33222 222233 3 3488999999998874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0032 Score=77.24 Aligned_cols=173 Identities=10% Similarity=0.102 Sum_probs=127.4
Q ss_pred CCcceeeeecCceEEEEeccCCceeeeccCC-cceeeeeecCCCCceEEEEecCCcEEeeccCCCce-------------
Q 000378 31 PNQALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------- 96 (1605)
Q Consensus 31 P~gallA~a~g~~I~l~d~~tG~~~~~l~~~-~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------------- 96 (1605)
|+--|+.++.|..|.=++...|+-+..+... +.++.+.-+| --+.|++|..|++|..||--+.+.
T Consensus 144 ~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 144 PSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH 222 (703)
T ss_pred CCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCC
Confidence 7778888899999999999999999996555 7889999999 445999999999999999877432
Q ss_pred ----------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 97 ----------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 97 ----------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
++.|+-||-.++ +.++|.| .+.. .-+.+++ -+.-|.. .-||..|.|-
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts~G~v---------~iyD----LRa~~pl-~~kdh~~--------e~pi~~l~~~ 280 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTSTGSV---------LIYD----LRASKPL-LVKDHGY--------ELPIKKLDWQ 280 (703)
T ss_pred ccccccCcceEEEecCCceeEEeeccCCcE---------EEEE----cccCCce-eecccCC--------ccceeeeccc
Confidence 444554444444 2333333 1122 3333333 3333333 4599999998
Q ss_pred cC--CCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 166 PR--LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 166 P~--~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
+. ++.|+|.. ..++|+||=.||.... --. -..++.-|.|-|++-++|++-.++.+..+=++
T Consensus 281 ~~~~q~~v~S~D-k~~~kiWd~~~Gk~~a-siE----pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 281 DTDQQNKVVSMD-KRILKIWDECTGKPMA-SIE----PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ccCCCceEEecc-hHHhhhcccccCCcee-ecc----ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 66 77888877 8999999999999873 333 34568889999999999999988877766554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00028 Score=84.51 Aligned_cols=227 Identities=11% Similarity=0.163 Sum_probs=166.4
Q ss_pred CCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-C----
Q 000378 21 PLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT-E---- 94 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~-~---- 94 (1605)
-+.|--+-|+-||+.|.. +--.||-.||-.|++..--+..--.|..+.|=- .-..+|+ -+..-++.+|-.- |
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AV-AQK~y~yvYD~~GtElHCl 206 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAV-AQKKYVYVYDNNGTELHCL 206 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHh-hhhceEEEecCCCcEEeeh
Confidence 346778999999999999 777799999999999888888888888888763 2134444 4455566777543 2
Q ss_pred -----ceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC
Q 000378 95 -----QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 95 -----q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~ 169 (1605)
-..+-|-|--=.++.+++ +. |--.+-+++++.|+.+.-+.. ++..+.=.|.-.
T Consensus 207 k~~~~v~rLeFLPyHfLL~~~~~-~G-----------~L~Y~DVS~GklVa~~~t~~G----------~~~vm~qNP~Na 264 (545)
T KOG1272|consen 207 KRHIRVARLEFLPYHFLLVAASE-AG-----------FLKYQDVSTGKLVASIRTGAG----------RTDVMKQNPYNA 264 (545)
T ss_pred hhcCchhhhcccchhheeeeccc-CC-----------ceEEEeechhhhhHHHHccCC----------ccchhhcCCccc
Confidence 114455565555553333 22 222344788888887776666 677787779999
Q ss_pred eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC-------CCCCe-----
Q 000378 170 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS-------IERPS----- 237 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs-------~~~~~----- 237 (1605)
|+=.|-..|+|-+|.=..-+++..+.- |..+|.++|++|+|...+|.+.|..+++||+- ..+|.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLc----H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l 340 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILC----HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL 340 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHh----cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccc
Confidence 999999999999999999999988888 99999999999999999999999999999986 11121
Q ss_pred ------ee--eeccceeEEEEEEeeCC--CCCcccccccccCCccccccc
Q 000378 238 ------MI--GMDGSLQVWKTRVIINP--NRPPMQANFFEPASIESIDIP 277 (1605)
Q Consensus 238 ------m~--g~~g~~~~w~~rv~~~~--~~~~~~a~~~~~a~~es~d~~ 277 (1605)
|. |.+-.+|+|+--.-.+| +-|=|.-++-- -|++|+.|
T Consensus 341 s~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~--~V~~l~Fc 388 (545)
T KOG1272|consen 341 SLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGG--PVEDLRFC 388 (545)
T ss_pred ccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCc--ccccceec
Confidence 11 22458999998776553 34445544432 67777654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0048 Score=73.47 Aligned_cols=206 Identities=17% Similarity=0.137 Sum_probs=132.7
Q ss_pred ccccc-cCCCCCCCCCceeEeCCCcc-eeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcE
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQA-LIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~ga-llA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
.++-+ ++|- .+..++|||... ||-+ +.|..|+++|..|-+..++-.....+++.+|-=.+.|.|-+|+..|.|
T Consensus 185 ssq~lp~~g~----~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 185 SSQILPGEGS----FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred hhhcccccch----hhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceE
Confidence 34444 5555 999999999999 4444 999999999999999999966669999999998788999999999999
Q ss_pred EeeccCC-Cce--------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccc
Q 000378 87 RSCDFDT-EQS--------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI 151 (1605)
Q Consensus 87 ~~wd~~~-~q~--------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i 151 (1605)
..+|.-. +-. .|+|-|..++. -.+|-.-.++|-++- |. ..-.+ +|-+ --+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f--~~gglLv~~lt~l~f--~e--i~~s~--------~~~p-~vl 325 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIF--TSGGLLVFALTVLQF--YE--IVFSA--------ECLP-CVL 325 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccc--cccceEEeeehhhhh--hh--hhccc--------cCCC-ccc
Confidence 9999876 211 55565555321 223344455666666 65 00111 1111 111
Q ss_pred ccccCCCceEeeeecCCCeEEEEecCc----eEEE----EecccceEEEEEe----eccccccccceeEeecCCceEEE-
Q 000378 152 KTDLKKPIVNLACHPRLPVLYVAYADG----LIRA----YNIHTYAVHYTLQ----LDNTIKLLGAGAFAFHPTLEWLF- 218 (1605)
Q Consensus 152 k~d~kkpV~~LA~~P~~~vL~~a~~dg----~IR~----w~i~t~~v~~tL~----~~~~~~~~g~~a~Af~P~g~~l~- 218 (1605)
..+-.-+.-+.+.+|++..+...|--+ ++|. -|-.+|.+.+--+ +-.+-|+.--.|+-=.|+.-.|+
T Consensus 326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 222223566777788777666666331 1111 1223444433222 22233444444665578888887
Q ss_pred EecCCCeEEeeecCCC
Q 000378 219 VGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 219 ~G~~dgtl~~W~vs~~ 234 (1605)
+||..++|.+||+...
T Consensus 406 ~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSF 421 (463)
T ss_pred ecCCcceeEEeccchh
Confidence 9999999999999853
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=76.34 Aligned_cols=211 Identities=16% Similarity=0.248 Sum_probs=141.5
Q ss_pred ccccccccccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCce------------------eeeccCCc
Q 000378 2 EWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSR------------------IASIDINS 62 (1605)
Q Consensus 2 ~W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~------------------~~~l~~~~ 62 (1605)
+|...|-..++ +...+ -+.|+-|.++|-+||+ .-|++|.+|.-..-.+ +-++++--
T Consensus 11 ~w~f~~~~~~~-vtead----iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieE 85 (433)
T KOG1354|consen 11 MWKFSQVFGLE-VTEAD----IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEE 85 (433)
T ss_pred hhhhhhhhcce-echhc----ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhh
Confidence 46555544444 33556 7899999999999999 6678898887433222 23467778
Q ss_pred ceeeeeecCCCC--ceEEEEecCCcEEeeccCCC---c------------------e-----------------------
Q 000378 63 PVVRMAYSPTSG--HAVVAILEDCTIRSCDFDTE---Q------------------S----------------------- 96 (1605)
Q Consensus 63 ~v~~lA~SP~~g--~~laa~~~D~tI~~wd~~~~---q------------------~----------------------- 96 (1605)
.+..+.+-++.+ |.|. -..|.|||+|-+..+ . .
T Consensus 86 KinkIrw~~~~n~a~FLl-stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 86 KINKIRWLDDGNLAEFLL-STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhceecCCCCccEEEE-ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 889999885444 5554 458999999977542 1 0
Q ss_pred ----EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC--Ce
Q 000378 97 ----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL--PV 170 (1605)
Q Consensus 97 ----~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~--~v 170 (1605)
++-++.|+++. |.---||-=+|+=---..+++.| -+..|.= .||--=|++--|||-. -+
T Consensus 165 yhiNSIS~NsD~Et~---------lSADdLRINLWnlei~d~sFnIV-DIKP~nm-----EeLteVITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 165 YHINSISVNSDKETF---------LSADDLRINLWNLEIIDQSFNIV-DIKPANM-----EELTEVITSAEFHPHHCNVF 229 (433)
T ss_pred eEeeeeeecCccceE---------eeccceeeeeccccccCCceeEE-EccccCH-----HHHHHHHhhhccCHhHccEE
Confidence 33344455544 33334454449833333477777 3444332 4677789999999854 44
Q ss_pred EEEEecCceEEEEecccc------eEEEEEeeccccccc------cceeEeecCCceEEEEecCC-CeEEeeecC-CCCC
Q 000378 171 LYVAYADGLIRAYNIHTY------AVHYTLQLDNTIKLL------GAGAFAFHPTLEWLFVGDRR-GTLLAWDVS-IERP 236 (1605)
Q Consensus 171 L~~a~~dg~IR~w~i~t~------~v~~tL~~~~~~~~~------g~~a~Af~P~g~~l~~G~~d-gtl~~W~vs-~~~~ 236 (1605)
.||.| -|+||+-|+-.. .-++...+||.=+.. .+.-|-|++.|+.+.+ || -|+++||+. ..+|
T Consensus 230 ~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~p 306 (433)
T KOG1354|consen 230 VYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKP 306 (433)
T ss_pred EEecC-CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCc
Confidence 55555 999999999843 334556667766654 6678999999999986 55 799999996 4444
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0081 Score=69.19 Aligned_cols=136 Identities=21% Similarity=0.306 Sum_probs=93.8
Q ss_pred eeeecCCCCceEEEEecCCcEEeeccCCC-c----------------eEEEeCCCccccc-cccCceeEeccCCCcceEE
Q 000378 66 RMAYSPTSGHAVVAILEDCTIRSCDFDTE-Q----------------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVF 127 (1605)
Q Consensus 66 ~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q----------------~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw 127 (1605)
.+|-|. +|. |+|+++|-.|.+=--.|+ . ..+++|||+..++ ..+.|+| +. |
T Consensus 2 ~~~~~~-~Gk-~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i-------~v--f 70 (282)
T PF15492_consen 2 HLALSS-DGK-LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTI-------RV--F 70 (282)
T ss_pred ceeecC-CCc-EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeE-------EE--E
Confidence 456666 774 456667766654332221 1 1899999999999 4555888 44 5
Q ss_pred eccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC-------CeEEEEecCceEEEEecc-----cceEEEEEe
Q 000378 128 FGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-------PVLYVAYADGLIRAYNIH-----TYAVHYTLQ 195 (1605)
Q Consensus 128 ~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~-------~vL~~a~~dg~IR~w~i~-----t~~v~~tL~ 195 (1605)
+ .+ +..+-++.+..+ -=+|+.+.|.+|+|.+=. .+|+..| +|.+|-|.|. .|+..++++
T Consensus 71 d----l~-g~~lf~I~p~~~---~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 71 D----LM-GSELFVIPPAMS---FPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-RGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred e----cc-cceeEEcCcccc---cCCccccceeeeEeeccccccccceeEEEEec-cceeeeEEEEcccCCcceeeEEEE
Confidence 5 44 244435555443 236899999999998322 5677777 9999999984 566777777
Q ss_pred eccccccccceeEeecCCceEEEEecC
Q 000378 196 LDNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1605)
Q Consensus 196 ~~~~~~~~g~~a~Af~P~g~~l~~G~~ 222 (1605)
..+ -+-.||+++.|||.=+.|.||+.
T Consensus 142 f~~-~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 142 FSS-HYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred ecc-cCCCceeEEEEcCCCCEEEEecc
Confidence 722 23459999999999999998873
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0036 Score=74.02 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=109.2
Q ss_pred cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEecc------CCceeeeccCC--cceeeeeecCCCCceEEEEecCCc
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTL------TGSRIASIDIN--SPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~------tG~~~~~l~~~--~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
+|.+ +|+++-||+++++||+ +.|.++.+|... |-+.|.++++. .-+-+|+|.- +.-.|-+|..|++
T Consensus 54 ~H~G----CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 54 EHTG----CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT 128 (609)
T ss_pred hhcc----ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence 6788 8999999999999999 899999999864 44556665443 5678899986 4568889999999
Q ss_pred EEeeccCCCce-EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeee
Q 000378 86 IRSCDFDTEQS-FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 86 I~~wd~~~~q~-~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~ 164 (1605)
|-+-|+.+.|+ +|+-.-+.+ . .|-.|--
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~-----------------------------------------~----------~VY~m~~ 157 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNR-----------------------------------------G----------DVYHMDQ 157 (609)
T ss_pred eEeeecccceeeeeecccCcc-----------------------------------------c----------ceeeccc
Confidence 99999987665 333222211 1 3344555
Q ss_pred ecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccc---eeEeecCCc-eEEEEecCCCeEEeeecC
Q 000378 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGA---GAFAFHPTL-EWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~---~a~Af~P~g-~~l~~G~~dgtl~~W~vs 232 (1605)
||-.-+|+|.+.||+|-+||+.....+-.+.. -+..- .+.-|||.- ..|+|.+.-|-.-+||.-
T Consensus 158 ~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~----~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 158 HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL----PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred CCCCceEEEEecCceEEEEeccCCCCCCceee----ecCCCccceeeeecCCCceeEEeccccCCCCceeec
Confidence 77778899999999999999998885544433 22221 245567643 333355554444455543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=77.69 Aligned_cols=183 Identities=14% Similarity=0.203 Sum_probs=118.1
Q ss_pred CceeEeCCCcceeee-ec----C--ceEEEEeccCCceeeeccCCcce-eeeeecCCCCceEEEEec---CCcEEeeccC
Q 000378 24 PHEAAFHPNQALIAV-AI----G--TYIIEFDTLTGSRIASIDINSPV-VRMAYSPTSGHAVVAILE---DCTIRSCDFD 92 (1605)
Q Consensus 24 v~~~aF~P~gallA~-a~----g--~~I~l~d~~tG~~~~~l~~~~~v-~~lA~SP~~g~~laa~~~---D~tI~~wd~~ 92 (1605)
-..++|.-||+++|| ++ | |.|++|| +.|..-++-+..+.. ..|||.| +|+.||+.-. ...|-+|-.+
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecC
Confidence 357899999999999 54 4 8999999 558877775544444 7889999 8888887765 3555555544
Q ss_pred CC---------------ceEEEeCCCccccccccCceeEeccCCCcceEEecccccccee----EEeeeecCCCCccccc
Q 000378 93 TE---------------QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVT----VVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 93 ~~---------------q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~----~vgt~eG~~~~~~ik~ 153 (1605)
-- -..+++|+|+.++|+.-...| ++ |. ++--+ .. .......
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~v-------qL--Wt----~~NYHWYLKqe-i~~~~~~------ 349 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRV-------QL--WT----RSNYHWYLKQE-IRFSSSE------ 349 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCc-------eE--EE----eeCCEEEEEEE-EEccCCC------
Confidence 31 117778888888875333345 88 55 32111 11 1112222
Q ss_pred ccCCCceEeeeecCCCe-EEEEecCceEEEEec----ccc---------eEEEEEeecccccc-----------------
Q 000378 154 DLKKPIVNLACHPRLPV-LYVAYADGLIRAYNI----HTY---------AVHYTLQLDNTIKL----------------- 202 (1605)
Q Consensus 154 d~kkpV~~LA~~P~~~v-L~~a~~dg~IR~w~i----~t~---------~v~~tL~~~~~~~~----------------- 202 (1605)
.+..+.+||.-|. |.+...+|.+..|+. ..+ .+. -+-+ +++++
T Consensus 350 ----~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~va-VIDG-~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 350 ----SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVA-VIDG-NKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred ----CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEE-EEeC-CeEEEecccccCCCchHhceEE
Confidence 4555889987665 888887676655443 322 111 1111 11111
Q ss_pred ---ccceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 203 ---LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 203 ---~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
..|.++||+|+..-+++=..||+|.+|+.+..
T Consensus 424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 16779999999999999999999999997754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=80.65 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=66.3
Q ss_pred ccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 154 d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
-|+-+|++.|++|+...|+.|..||.|++||..++..+++ +. ..-..-+|+||+|-+++||++.|-|.+||+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka-----~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA-----EFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee-----cccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4666999999999999999999999999999999988854 44 23466889999999999999999999999985
Q ss_pred CC
Q 000378 234 ER 235 (1605)
Q Consensus 234 ~~ 235 (1605)
+.
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 43
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0035 Score=76.95 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=103.7
Q ss_pred ecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce------------EEEeCCC
Q 000378 39 AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPE 103 (1605)
Q Consensus 39 a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~ 103 (1605)
--+..|-+++++.|..... -.|.++|+.+-.+- +..-|-++..|+-|-.|++.+++- ++.++||
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 4456899999999877665 56889999988887 555788999999999999988643 8889999
Q ss_pred ccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecC------CCeEEEEecC
Q 000378 104 KKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR------LPVLYVAYAD 177 (1605)
Q Consensus 104 ~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~------~~vL~~a~~d 177 (1605)
|+++. ...++| +. |+ -.+.++|.||+||.. ||++|+|--+ -+||.++-.+
T Consensus 156 ~~~l~-~as~~i-------k~--~~----~~~kevv~~ftgh~s----------~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 156 GKILL-TASRQI-------KV--LD----IETKEVVITFTGHGS----------PVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred CCEEE-eccceE-------EE--EE----ccCceEEEEecCCCc----------ceEEEEEEEeccccccceeeeccccc
Confidence 99985 344577 66 99 999999999999999 9999999977 7789999989
Q ss_pred ceEEEEeccc
Q 000378 178 GLIRAYNIHT 187 (1605)
Q Consensus 178 g~IR~w~i~t 187 (1605)
+.|-.|=+..
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 9888886654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.024 Score=68.77 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=137.0
Q ss_pred CCCcceeeeecCceEEEEeccCCceeeeccCCccee-------------eee-ecCCCCceEEEEecCCc--EEeeccCC
Q 000378 30 HPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVV-------------RMA-YSPTSGHAVVAILEDCT--IRSCDFDT 93 (1605)
Q Consensus 30 ~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~-------------~lA-~SP~~g~~laa~~~D~t--I~~wd~~~ 93 (1605)
+.||+.+.-+-+.-|-+||+.|.+.... +++-|+. =|- ||+.+|+.+|-.|...+ .+.||-..
T Consensus 275 nsDGkrIvFq~~GdIylydP~td~lekl-dI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~ 353 (668)
T COG4946 275 NSDGKRIVFQNAGDIYLYDPETDSLEKL-DIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYS 353 (668)
T ss_pred CCCCcEEEEecCCcEEEeCCCcCcceee-ecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCee
Confidence 5799999998888999999999876544 4443333 233 88999999888887664 34565443
Q ss_pred Cce-------EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 94 EQS-------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 94 ~q~-------~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
-|. ++-+.-+++.+. +-.|+. .+.|++ ..+..+.-+|+.-. -|-+++.+
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD--------~l~iyd-----~~~~e~kr~e~~lg----------~I~av~vs 410 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGD--------KLGIYD-----KDGGEVKRIEKDLG----------NIEAVKVS 410 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCc--------eEEEEe-----cCCceEEEeeCCcc----------ceEEEEEc
Confidence 111 222233333222 122321 123344 22223334455555 69999999
Q ss_pred cCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCC----eEEeeecCC------CC
Q 000378 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG----TLLAWDVSI------ER 235 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg----tl~~W~vs~------~~ 235 (1605)
|||..+++|-....|-++||.||.+.-.=+- .-.-+.-|++||+++|+|-+=-+| .|+++|+.. .+
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idkS----~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKS----EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEeccc----ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 9999999999999999999999999843333 344577899999999999655444 577777663 33
Q ss_pred Ceeeee------ccceeEEEEEEeeCCCCCccccccc
Q 000378 236 PSMIGM------DGSLQVWKTRVIINPNRPPMQANFF 266 (1605)
Q Consensus 236 ~~m~g~------~g~~~~w~~rv~~~~~~~~~~a~~~ 266 (1605)
|+---+ ||+-.-+-.+--+||..-+..-||.
T Consensus 487 ~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~ 523 (668)
T COG4946 487 PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFS 523 (668)
T ss_pred CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEE
Confidence 333333 5777767777777777777766663
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.031 Score=68.91 Aligned_cols=214 Identities=19% Similarity=0.237 Sum_probs=139.7
Q ss_pred CceeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceE-----EEEecCCcEE-----eeccCC
Q 000378 24 PHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAV-----VAILEDCTIR-----SCDFDT 93 (1605)
Q Consensus 24 v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~l-----aa~~~D~tI~-----~wd~~~ 93 (1605)
....+||++|+++|.+.+..|++||+.++..+-+.... .+..|-||| -|..| .++-.|++-. .|+..|
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeecc-cccccccccccccccCCCCCCCceeeeeecc
Confidence 67899999999999999999999999999744444444 899999999 55444 2455555544 999888
Q ss_pred Cc----------e--EEEeCCCccccc---------------------cccCceeEeccCCC-cceEEecccccc---c-
Q 000378 94 EQ----------S--FVLHSPEKKMES---------------------ISVDTEVHLALTPL-QPVVFFGFHRRM---S- 135 (1605)
Q Consensus 94 ~q----------~--~v~~sp~~~~~~---------------------~s~d~~ih~a~t~~-~l~vw~~~~~~~---s- 135 (1605)
.. . +.-||+|...-+ ++..+---++|+|- ++ .+-++...- +
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~-~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEP-PFVAVYVPEKKGAP 193 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCC-ceEEEEccCCCCCC
Confidence 41 1 344444332221 11111112455554 32 011111111 1
Q ss_pred -eeEEe--eeecCCCCcccccccCCCceEeeeecCCC---eEEEEecCc---------eEEEEecccceEEEEEeecccc
Q 000378 136 -VTVVG--TVEGGRAPTKIKTDLKKPIVNLACHPRLP---VLYVAYADG---------LIRAYNIHTYAVHYTLQLDNTI 200 (1605)
Q Consensus 136 -~~~vg--t~eG~~~~~~ik~d~kkpV~~LA~~P~~~---vL~~a~~dg---------~IR~w~i~t~~v~~tL~~~~~~ 200 (1605)
.-.+. +++|-..+.--|+=.|..=+.+-+.++|. +|++-+.|. +.-+++++.-.+...|....-|
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPV 273 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPV 273 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCc
Confidence 11222 36677777778888888888888888876 455555555 6778888866777777777778
Q ss_pred ccc-----------------------------------cce-eEeecCCceEEEE---ecCCCeEEeeecCCCCCeeeee
Q 000378 201 KLL-----------------------------------GAG-AFAFHPTLEWLFV---GDRRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 201 ~~~-----------------------------------g~~-a~Af~P~g~~l~~---G~~dgtl~~W~vs~~~~~m~g~ 241 (1605)
|.+ |.+ ++=|+|.|.+|+. |--.|.+-+|||.. +--|+-+
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~ 352 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKF 352 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhcccc
Confidence 877 111 6678999999994 44899999999986 5455544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.11 Score=62.75 Aligned_cols=274 Identities=16% Similarity=0.181 Sum_probs=154.6
Q ss_pred ceeEeCCCcceeeeecCc------------eEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeec
Q 000378 25 HEAAFHPNQALIAVAIGT------------YIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1605)
Q Consensus 25 ~~~aF~P~gallA~a~g~------------~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd 90 (1605)
+-+|-+|.|-.+|+.-|. .|.+|+ ..|..+.+ .+. ..++.|.|+. .+.|+....||+++..|
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~-~~iv~~~wt~--~e~LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDS-GRIVGMGWTD--DEELVVVQSDGTVRVYD 107 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECC-CCEEEEEECC--CCeEEEEEcCCEEEEEe
Confidence 345677888888886665 699999 55888887 555 7999999987 46888999999999999
Q ss_pred cCCCceEEEeCCCccccc-cccCceeEeccCCCcceEE-eccccccceeEEeeeecCCCCcccccccCCCceEeeeecCC
Q 000378 91 FDTEQSFVLHSPEKKMES-ISVDTEVHLALTPLQPVVF-FGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1605)
Q Consensus 91 ~~~~q~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw-~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~ 168 (1605)
+--+. -|+-...... .-.|..+ ..-|.| +|+.=...-..+=.+++...+-+.++--+.|=-..++++..
T Consensus 108 ~~G~~---~fsl~~~i~~~~v~e~~i------~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~ 178 (410)
T PF04841_consen 108 LFGEF---QFSLGEEIEEEKVLECRI------FAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP 178 (410)
T ss_pred CCCce---eechhhhccccCcccccc------cccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccc
Confidence 86444 3442111100 0000000 001122 22221222122213455544433333223333333333221
Q ss_pred C--eEEEEecCceEEEEecccceEEEEEeeccc--cc-cccceeEeecCCceEEEEecCCCeEEeeecCC----------
Q 000378 169 P--VLYVAYADGLIRAYNIHTYAVHYTLQLDNT--IK-LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI---------- 233 (1605)
Q Consensus 169 ~--vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~--~~-~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~---------- 233 (1605)
. ..+.-+.++.+.+-. .++.-++.+..+.. |- ...+..++.||+|+.|+.=..+|+|.++..+.
T Consensus 179 ~~~~i~~l~~~~~~~i~~-~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 179 SWTVIPLLSSDRVVEILL-ANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred ccccceEeecCcceEEEE-ecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 1 112233455553333 33444445544221 11 14678999999999999777889987776442
Q ss_pred --CCCeeeeecc---ceeEEEEEEee-CCCCCccccccccc-CCccccccceeeccCCCcceecCCccccccccccc-ch
Q 000378 234 --ERPSMIGMDG---SLQVWKTRVII-NPNRPPMQANFFEP-ASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRL-NL 305 (1605)
Q Consensus 234 --~~~~m~g~~g---~~~~w~~rv~~-~~~~~~~~a~~~~~-a~~es~d~~~il~~~~g~~vyp~p~~~~~~~h~~~-n~ 305 (1605)
.+|.-+--.| -+-.|...|.+ +|+.....-.+=.+ .-+..+|=.||+++-.-+-+..+|.-.-=.+-+.+ .-
T Consensus 258 ~~~~p~~~~WCG~dav~l~~~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp~~~~~if~igs~~p 337 (410)
T PF04841_consen 258 SKSPPKQMAWCGNDAVVLSWEDELLLVGPDGDSISFWYDGPVILVSEIDGVRIITSTSHEFLQRVPDSTENIFRIGSTSP 337 (410)
T ss_pred cCCCCcEEEEECCCcEEEEeCCEEEEECCCCCceEEeccCceEEeccCCceEEEeCCceEEEEECCHHHHHHhcccCCCc
Confidence 3555444444 46779888766 77766543222222 23667888999999999999999876544432222 22
Q ss_pred hhhhhhh
Q 000378 306 AVLLFAN 312 (1605)
Q Consensus 306 ~~l~~~~ 312 (1605)
+|+++-+
T Consensus 338 ~a~L~~a 344 (410)
T PF04841_consen 338 GAILLDA 344 (410)
T ss_pred cHHHHHH
Confidence 4555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.091 Score=62.34 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=117.7
Q ss_pred CCceeEeCCCcceeee--ec--CceEE--EEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 23 QPHEAAFHPNQALIAV--AI--GTYII--EFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~--a~--g~~I~--l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
.|.=++|+|++++|-+ .. .+.|. -||...|+..-. .-.+++=+.++.++++..+++|-=.-+.|...=+.+
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 7899999999988877 22 44554 455555776655 445555599999994334444444445565555433
Q ss_pred C--------------c----------e-EEEeCCCcccccc---ccCceeEeccCCCcceEEeccccccc-eeEEeeeec
Q 000378 94 E--------------Q----------S-FVLHSPEKKMESI---SVDTEVHLALTPLQPVVFFGFHRRMS-VTVVGTVEG 144 (1605)
Q Consensus 94 ~--------------q----------~-~v~~sp~~~~~~~---s~d~~ih~a~t~~~l~vw~~~~~~~s-~~~vgt~eG 144 (1605)
+ . . +.-+.||++++-. ..| |..+|.-.-+..+ .++..--.|
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D----------ri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD----------RIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc----------eEEEEEcccCccccccccccCCC
Confidence 1 1 0 6667788877752 334 2223431111111 111111233
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEec-CceEEEEeccc--ceEEEEEeecccccc-----ccceeEeecCCceE
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHT--YAVHYTLQLDNTIKL-----LGAGAFAFHPTLEW 216 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~-dg~IR~w~i~t--~~v~~tL~~~~~~~~-----~g~~a~Af~P~g~~ 216 (1605)
.++ |-++|||++++.|+-.+ +++|-.|...+ |+.. .||-=.++-. .++.|+..+|||+.
T Consensus 191 ~GP------------RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~-~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 191 AGP------------RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE-ELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred CCc------------ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE-EeeeeccCccccCCCCceeEEEECCCCCE
Confidence 344 88999999999999875 78999999988 4444 6665333322 37789999999999
Q ss_pred EEEecCCC-eEEeeecCCC
Q 000378 217 LFVGDRRG-TLLAWDVSIE 234 (1605)
Q Consensus 217 l~~G~~dg-tl~~W~vs~~ 234 (1605)
|.+-.|.. .|-++-|++.
T Consensus 258 LYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEEecCCCCeEEEEEEcCC
Confidence 99887543 4555555543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.087 Score=62.21 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=95.8
Q ss_pred CcceeeeecCceEEEEeccCCceeeeccCCcc--------eeeeeecCC-CCceEEEEecCCcEEeeccCCCceEE--Ee
Q 000378 32 NQALIAVAIGTYIIEFDTLTGSRIASIDINSP--------VVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQSFV--LH 100 (1605)
Q Consensus 32 ~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~--------v~~lA~SP~-~g~~laa~~~D~tI~~wd~~~~q~~v--~~ 100 (1605)
++.+++...+..|.-+|+.||+.+-......+ ..++..+|. .++.|.+++.|+.++..|..+.+..- -+
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 45566667777899999999987655322211 112223441 23466778889999999999864311 11
Q ss_pred C----C---CccccccccCceeEeccCCCcceEEeccccccceeEEeeee--cCCCCcccccccCCCceEeeeecCCCeE
Q 000378 101 S----P---EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE--GGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1605)
Q Consensus 101 s----p---~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e--G~~~~~~ik~d~kkpV~~LA~~P~~~vL 171 (1605)
. | +++....+.|+++|+ ++ ..+++.+-..+ +++ ...+.+. -+..|
T Consensus 285 ~~~~~~~~~~~~vy~~~~~g~l~a---------ld----~~tG~~~W~~~~~~~~-----------~~~sp~v--~~g~l 338 (394)
T PRK11138 285 GSVNDFAVDGGRIYLVDQNDRVYA---------LD----TRGGVELWSQSDLLHR-----------LLTAPVL--YNGYL 338 (394)
T ss_pred CCccCcEEECCEEEEEcCCCeEEE---------EE----CCCCcEEEcccccCCC-----------cccCCEE--ECCEE
Confidence 1 0 122222334444422 22 22222221100 010 1112222 25678
Q ss_pred EEEecCceEEEEecccceEEEEEeeccccccccce-eEeecCCceEEEEecCCCeEEeeec
Q 000378 172 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG-AFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 172 ~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~-a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
|+++.||.+.+.|..||+++..... ...++. +-++ .+..|+++++||+|.++++
T Consensus 339 ~v~~~~G~l~~ld~~tG~~~~~~~~----~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRFVAQQKV----DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEc----CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999999999999999877665 222222 1122 3568999999999998875
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0096 Score=68.13 Aligned_cols=148 Identities=13% Similarity=0.043 Sum_probs=101.3
Q ss_pred cccccccccccc-cCCCCCCCCCceeEeCCCcceeee--ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceE
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~l 77 (1605)
|++.+-..+... .-.+ +|+++|=||.|+.+.. +.|+-|.+||+..++-..+ ..|-++++.+-|-|-++.-|
T Consensus 164 ~~~~p~~t~~~~~~~~~----~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALD----AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ecccccccccccccccc----cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 555554444443 2334 5999999999998877 8889999999999987777 88999999999999999999
Q ss_pred EEEecCCcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCC
Q 000378 78 VAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK 157 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kk 157 (1605)
-..++||.+--||-.+ +.+.-++....+ .+ |----+++++-.|..+-. .-.+
T Consensus 240 ft~sedGslw~wdas~--~~l~i~~~~s~~---------------s~--WLsgD~v~s~i~i~~ll~---------~~~~ 291 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST--TFLSISNQASVI---------------SS--WLSGDPVKSRIEITSLLP---------SRSL 291 (319)
T ss_pred eEecCCCcEEEEcCCC--ceEEecCccccc---------------cc--cccCCcccceEeeecccc---------ccce
Confidence 9999999999999976 333344443222 22 432222333333311111 2224
Q ss_pred CceEeeeecCCCeEEEEecCceEEEEe
Q 000378 158 PIVNLACHPRLPVLYVAYADGLIRAYN 184 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~IR~w~ 184 (1605)
.|.++-. +||.|+.|+.-+.|-+|+
T Consensus 292 SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 292 SINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeeeeec--cCceEEeccccceEEEec
Confidence 5555443 577899999888886664
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0077 Score=43.45 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=33.8
Q ss_pred ceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeee
Q 000378 188 YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 188 ~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
+....++.. |...+.++.|+|+++++++|+.||++++|+
T Consensus 2 ~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKG----HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEe----cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345556666 888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0072 Score=43.59 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=32.2
Q ss_pred EEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEe
Q 000378 138 VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYN 184 (1605)
Q Consensus 138 ~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~ 184 (1605)
.+.++.+|.+ +|.+|.++|++..+++++.||.|++||
T Consensus 4 ~~~~~~~~~~----------~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTG----------PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCC----------ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445667777 999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.079 Score=64.55 Aligned_cols=197 Identities=18% Similarity=0.160 Sum_probs=124.1
Q ss_pred CCceeEeCCCcceeee----ecC-ceEEEEeccCCceeeeccCCcceeeeeecCCCC-ceEEEEecCC--cEEeeccCCC
Q 000378 23 QPHEAAFHPNQALIAV----AIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSG-HAVVAILEDC--TIRSCDFDTE 94 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~----a~g-~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g-~~laa~~~D~--tI~~wd~~~~ 94 (1605)
.+..-+|+|+++.||- .-+ ..|.++|..||+.-.++........-+||| || .++.+...|+ .|++-|+++.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEEEcCCCC
Confidence 4566789999999876 233 479999999999999988888888899999 66 4445555565 4677788776
Q ss_pred ce-----------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEee
Q 000378 95 QS-----------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLA 163 (1605)
Q Consensus 95 q~-----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA 163 (1605)
++ .=-|||||+.+.--+|+.. ++-||---.--.++..+ |..+... . +-.
T Consensus 273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G-------~p~I~~~~~~g~~~~ri-T~~~~~~-----------~-~p~ 332 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG-------RPQIYLYDLEGSQVTRL-TFSGGGN-----------S-NPV 332 (425)
T ss_pred cceecccCCccccCccCCCCCCEEEEEeCCCC-------CcceEEECCCCCceeEe-eccCCCC-----------c-Ccc
Confidence 55 2347799999985556555 44445410111133344 5555555 2 666
Q ss_pred eecCCCeEEEEec-Cce--EEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeee
Q 000378 164 CHPRLPVLYVAYA-DGL--IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240 (1605)
Q Consensus 164 ~~P~~~vL~~a~~-dg~--IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g 240 (1605)
.||||..++.-+. +|. |-.+|++++.-...|. +-.....=.+.|+|.++.--+..+ ..+-|..
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-----~~~~~e~ps~~~ng~~i~~~s~~~---------~~~~l~~ 398 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-----STYLNESPSWAPNGRMIMFSSGQG---------GGSVLSL 398 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-----ccccCCCCCcCCCCceEEEeccCC---------CCceEEE
Confidence 7899999887764 344 6666666666321222 222333556788898888333222 4455555
Q ss_pred eccceeEEEEEEeeC
Q 000378 241 MDGSLQVWKTRVIIN 255 (1605)
Q Consensus 241 ~~g~~~~w~~rv~~~ 255 (1605)
+...-++++ ++...
T Consensus 399 ~s~~g~~~~-~~~~~ 412 (425)
T COG0823 399 VSLDGRVSR-PLPLA 412 (425)
T ss_pred eeccceeEE-EEecc
Confidence 544444444 44443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.083 Score=62.36 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=104.0
Q ss_pred CcceeeeecCceEEEEeccCCceeeeccCCccee--------eeeecCC-CCceEEEEecCCcEEeeccCCCceEEEeC-
Q 000378 32 NQALIAVAIGTYIIEFDTLTGSRIASIDINSPVV--------RMAYSPT-SGHAVVAILEDCTIRSCDFDTEQSFVLHS- 101 (1605)
Q Consensus 32 ~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~--------~lA~SP~-~g~~laa~~~D~tI~~wd~~~~q~~v~~s- 101 (1605)
++.+.+.+.+..+.=+|+.||+++=......... .+.-+|. +++.|.++..|+.++.+|..|++..=-+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 6677777777899999999999886644433110 1111232 34577788999999999999964411111
Q ss_pred -------C---CccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeE
Q 000378 102 -------P---EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1605)
Q Consensus 102 -------p---~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL 171 (1605)
| +++.+-.+.|+.+ +-++ ..+++++=..+...+...+.. .--|+. ....+
T Consensus 149 ~~~~~ssP~v~~~~v~v~~~~g~l---------~ald----~~tG~~~W~~~~~~~~~~~~~-~~sP~v------~~~~v 208 (394)
T PRK11138 149 AGEALSRPVVSDGLVLVHTSNGML---------QALN----ESDGAVKWTVNLDVPSLTLRG-ESAPAT------AFGGA 208 (394)
T ss_pred CCceecCCEEECCEEEEECCCCEE---------EEEE----ccCCCEeeeecCCCCcccccC-CCCCEE------ECCEE
Confidence 1 2332322333333 1122 333333322221111000000 001332 23457
Q ss_pred EEEecCceEEEEecccceEEEEEeeccccccc---cceeEeecC--CceEEEEecCCCeEEeeecCCCCCeeeeecccee
Q 000378 172 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL---GAGAFAFHP--TLEWLFVGDRRGTLLAWDVSIERPSMIGMDGSLQ 246 (1605)
Q Consensus 172 ~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~---g~~a~Af~P--~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~ 246 (1605)
++++.||.+.++|.+||+++............ ....+.-+| .+..|++++.+|++.+.|..+ |. +
T Consensus 209 ~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t---------G~-~ 278 (394)
T PRK11138 209 IVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS---------GQ-I 278 (394)
T ss_pred EEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC---------CC-E
Confidence 77888999999999999988765431100000 000111233 356788888899999998764 32 5
Q ss_pred EEEEE
Q 000378 247 VWKTR 251 (1605)
Q Consensus 247 ~w~~r 251 (1605)
+|+..
T Consensus 279 ~W~~~ 283 (394)
T PRK11138 279 VWKRE 283 (394)
T ss_pred EEeec
Confidence 79865
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0087 Score=75.12 Aligned_cols=146 Identities=13% Similarity=0.206 Sum_probs=98.5
Q ss_pred CCCCceeEeCCCcce--eeeec-CceEEEEeccCCceeee----ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 21 PLQPHEAAFHPNQAL--IAVAI-GTYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 21 ~~~v~~~aF~P~gal--lA~a~-g~~I~l~d~~tG~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
|-+|--+-|||+-|. -+|++ ..--++|..+.-+--++ -+|+..|+-|-|.|+.-.++|..+-|-.++.||.-.
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 556777778887663 33322 22334566654444333 688899999999999999999999999999999987
Q ss_pred Cce-------------EEEeC-CCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc
Q 000378 94 EQS-------------FVLHS-PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI 159 (1605)
Q Consensus 94 ~q~-------------~v~~s-p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV 159 (1605)
-++ -|..+ -|+-.++-|-+..| .||. -|...+++-++.||-. .|
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i---------~vwd---~r~gs~pl~s~K~~vs----------~v 204 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI---------FVWD---LRKGSTPLCSLKGHVS----------SV 204 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhhccCCce---------EEEe---ccCCCcceEEecccce----------ee
Confidence 433 23333 33444443444444 3466 2344555556777776 88
Q ss_pred eEeeee-cCCCeEEEEecCceEEEEecccc
Q 000378 160 VNLACH-PRLPVLYVAYADGLIRAYNIHTY 188 (1605)
Q Consensus 160 ~~LA~~-P~~~vL~~a~~dg~IR~w~i~t~ 188 (1605)
.+++|. -....+-+.+.||+++.||-...
T Consensus 205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 889887 55566677778999999997654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.013 Score=69.09 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=105.5
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCC----ceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTG----SRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG----~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~ 96 (1605)
-|-++-||-.+.++.. --+++|+..|..++ ..-+. +-|+..|++|--=-+++..|.|-.-|++|+|||.
T Consensus 254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~----- 328 (425)
T KOG2695|consen 254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL----- 328 (425)
T ss_pred hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee-----
Confidence 4778889999999998 44789999999865 22222 8888888887665566789999999999999998
Q ss_pred EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee--cCCCeEEEE
Q 000378 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH--PRLPVLYVA 174 (1605)
Q Consensus 97 ~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~--P~~~vL~~a 174 (1605)
|. .+..+-|.+-|||-+ --.-|-+| |.-.+++++
T Consensus 329 --------------------------R~--------~K~~~~V~qYeGHvN----------~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 329 --------------------------RA--------TKCKKSVMQYEGHVN----------LSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred --------------------------hh--------hhcccceeeeecccc----------cccccccccccccceEEEc
Confidence 21 233334557899988 33334444 888888999
Q ss_pred ecCceEEEEecccceEEEEEeeccccccccceeEee
Q 000378 175 YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 210 (1605)
Q Consensus 175 ~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af 210 (1605)
+.|---|+|-+++|..++|+---+..-.+-+-++||
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~ 400 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF 400 (425)
T ss_pred cCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence 999999999999999999887755544555567777
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.17 Score=62.72 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=129.5
Q ss_pred eeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCC-ceEEE-----EecCCcEEeeccCCC---ce
Q 000378 26 EAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSG-HAVVA-----ILEDCTIRSCDFDTE---QS 96 (1605)
Q Consensus 26 ~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g-~~laa-----~~~D~tI~~wd~~~~---q~ 96 (1605)
+..||+|--+.|==++..+..||...-+.+..--+...+..+++||..- +.||+ ++.=..+|+|-.--+ ++
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~ 209 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP 209 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccch
Confidence 7789999877776888899999977655555566788899999998422 45543 556677888887632 22
Q ss_pred ------------EEEeCCCccccc--cccC-----------ceeEeccC-------------CCcceEEeccccccceeE
Q 000378 97 ------------FVLHSPEKKMES--ISVD-----------TEVHLALT-------------PLQPVVFFGFHRRMSVTV 138 (1605)
Q Consensus 97 ------------~v~~sp~~~~~~--~s~d-----------~~ih~a~t-------------~~~l~vw~~~~~~~s~~~ 138 (1605)
...+++=|.-+= +|.| +++|+=-| |+--|.|+ .++...
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~----~s~~EF 285 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS----PSGREF 285 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC----CCCCEE
Confidence 333444333222 1222 34554222 34467888 444333
Q ss_pred EeeeecCCCCcccccccCC---------CceEeeeecCCCeEEEEecC---ceEEEEecccceEEEEEeeccccccccce
Q 000378 139 VGTVEGGRAPTKIKTDLKK---------PIVNLACHPRLPVLYVAYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAG 206 (1605)
Q Consensus 139 vgt~eG~~~~~~ik~d~kk---------pV~~LA~~P~~~vL~~a~~d---g~IR~w~i~t~~v~~tL~~~~~~~~~g~~ 206 (1605)
+.++|--+++.-=-||+- |=..+=|+|-|.+|..|+=+ |.|.+||+.|+.-+- ++++.+..
T Consensus 286 -~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~------~~~a~~tt 358 (566)
T KOG2315|consen 286 -AVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA------KFKAANTT 358 (566)
T ss_pred -EEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc------ccccCCce
Confidence 356665543322222221 22356778999999998865 679999999977663 34678888
Q ss_pred eEeecCCceEEEEecC------CCeEEeeecC
Q 000378 207 AFAFHPTLEWLFVGDR------RGTLLAWDVS 232 (1605)
Q Consensus 207 a~Af~P~g~~l~~G~~------dgtl~~W~vs 232 (1605)
-|.|||||||+.|..- |.-++||+.+
T Consensus 359 ~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9999999999997662 6889999987
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.032 Score=65.06 Aligned_cols=205 Identities=19% Similarity=0.282 Sum_probs=138.0
Q ss_pred cccccccCCCCCCCCCceeEeCCCcceeee-ecCceEEEEecc--CCcee----------------eeccCCcceeeeee
Q 000378 9 LDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTL--TGSRI----------------ASIDINSPVVRMAY 69 (1605)
Q Consensus 9 ~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~--tG~~~----------------~~l~~~~~v~~lA~ 69 (1605)
+||..+-..+ -+.++-|-..|-+||+ .-|++|.+|.-. .||+- -++++--.|..|-+
T Consensus 18 ~d~~~~tead----~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w 93 (460)
T COG5170 18 LDLNSSTEAD----KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW 93 (460)
T ss_pred hhcccccccc----eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence 3444443444 7889999999999999 457789998743 24432 33666677888877
Q ss_pred c-CCCC-ceEEEEecCCcEEeeccCCC------------------c-----e----------------------------
Q 000378 70 S-PTSG-HAVVAILEDCTIRSCDFDTE------------------Q-----S---------------------------- 96 (1605)
Q Consensus 70 S-P~~g-~~laa~~~D~tI~~wd~~~~------------------q-----~---------------------------- 96 (1605)
= |++. |.|++ ..|.|||+|-+... + +
T Consensus 94 ~~~t~r~hFLls-tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 94 FDDTGRNHFLLS-TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred ecCCCcceEEEe-cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 6 6555 77665 58999999987653 1 0
Q ss_pred ----EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecC--CCe
Q 000378 97 ----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR--LPV 170 (1605)
Q Consensus 97 ----~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~--~~v 170 (1605)
++-|+.|.++. +|+| -||.=+|+----..+++.| -+..|.- .||-.-|++--|||. --+
T Consensus 173 yhiNSiS~NsD~et~-lSaD--------dLrINLWnl~i~D~sFnIV-DiKP~nm-----eeLteVItSaeFhp~~cn~f 237 (460)
T COG5170 173 YHINSISFNSDKETL-LSAD--------DLRINLWNLEIIDGSFNIV-DIKPHNM-----EELTEVITSAEFHPEMCNVF 237 (460)
T ss_pred eEeeeeeecCchhee-eecc--------ceeeeeccccccCCceEEE-eccCccH-----HHHHHHHhhcccCHhHcceE
Confidence 33344555555 3333 2343348833333467777 4554443 466667999999975 445
Q ss_pred EEEEecCceEEEEecc------cceEEEEEeeccccccc------cceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 171 LYVAYADGLIRAYNIH------TYAVHYTLQLDNTIKLL------GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 171 L~~a~~dg~IR~w~i~------t~~v~~tL~~~~~~~~~------g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
.||.| -|.|++-|+. +-.-++.+++|+.=|.. .+.-|-|+|.|+.+.+-|- -|+++||+--..
T Consensus 238 mYSsS-kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 238 MYSSS-KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred EEecC-CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 67766 9999999997 44455677777766654 5668999999999986543 699999998443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.069 Score=68.21 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=65.5
Q ss_pred CCCCCCCCCceeEeCCCcceeeeecCc-eEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 16 RGDHKPLQPHEAAFHPNQALIAVAIGT-YIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 16 ~~~~~~~~v~~~aF~P~gallA~a~g~-~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
|-+++|..+.++||||.-.+||++|+. .|.+|...|-..-++ .-|.++++-+-||| +|.+|+++..=+.+++|-.+.
T Consensus 54 r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 54 RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 444688899999999999999998875 577887665444444 89999999999999 888999999999999998884
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.53 Score=55.28 Aligned_cols=209 Identities=17% Similarity=0.168 Sum_probs=125.3
Q ss_pred CCCcceeee----------ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce---
Q 000378 30 HPNQALIAV----------AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1605)
Q Consensus 30 ~P~gallA~----------a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~--- 96 (1605)
||||+.+.. +....+.+||..||...........+....+|| +|+.||-.. |.-|++++..+.+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 789999888 677789999999998888855578899999999 788877764 67899999866422
Q ss_pred --------------------------EEEeCCCccccc-cc-cCcee---EeccCCC----cceEEe-cccccc------
Q 000378 97 --------------------------FVLHSPEKKMES-IS-VDTEV---HLALTPL----QPVVFF-GFHRRM------ 134 (1605)
Q Consensus 97 --------------------------~v~~sp~~~~~~-~s-~d~~i---h~a~t~~----~l~vw~-~~~~~~------ 134 (1605)
.+-+||||+.++ .. .++.| |+-..-- .|-+.. -..|.-
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 677999999999 33 33444 2211110 111111 011111
Q ss_pred ceeEEeeeecCCCC-cccc---cccCCCceEeeeecCCCeEEEEecCc-----eEEEEecccceEEEEEeeccccccccc
Q 000378 135 SVTVVGTVEGGRAP-TKIK---TDLKKPIVNLACHPRLPVLYVAYADG-----LIRAYNIHTYAVHYTLQLDNTIKLLGA 205 (1605)
Q Consensus 135 s~~~vgt~eG~~~~-~~ik---~d~kkpV~~LA~~P~~~vL~~a~~dg-----~IR~w~i~t~~v~~tL~~~~~~~~~g~ 205 (1605)
+..++ .+++++-. ..+. ..-..=+..+.++|++..|++..-++ .+.++|..++...-.++....--..-.
T Consensus 159 ~l~v~-~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVV-DLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEE-ESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEE-ECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 11122 24444331 0111 11234478899999999555554443 577889988877655544333233344
Q ss_pred eeEeec-C-CceEEEEecCCCeEEeeecCCCCCeeeee
Q 000378 206 GAFAFH-P-TLEWLFVGDRRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 206 ~a~Af~-P-~g~~l~~G~~dgtl~~W~vs~~~~~m~g~ 241 (1605)
..+.|. | +.+.|+.-.+||--+|+-++...-...-|
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 567765 4 55555677799988888777655544444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.021 Score=69.86 Aligned_cols=214 Identities=20% Similarity=0.221 Sum_probs=140.8
Q ss_pred CCCcceeee-ecCceEEEEeccC--Cceeee---ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC----ce---
Q 000378 30 HPNQALIAV-AIGTYIIEFDTLT--GSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE----QS--- 96 (1605)
Q Consensus 30 ~P~gallA~-a~g~~I~l~d~~t--G~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~----q~--- 96 (1605)
|=.|.|+|+ -..+.--+.|..| =..|+. .+|...|.+++-=- +-+..++.+.|.|||+|-+..| .|
T Consensus 698 hlkGn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaC 776 (1034)
T KOG4190|consen 698 HLKGNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSAC 776 (1034)
T ss_pred ccccchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCcccccee
Confidence 446777777 2222222333222 122332 66666776665433 4467889999999999998764 11
Q ss_pred ------------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEe-eeecCCCCcccccccCCCceEee
Q 000378 97 ------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG-TVEGGRAPTKIKTDLKKPIVNLA 163 (1605)
Q Consensus 97 ------------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vg-t~eG~~~~~~ik~d~kkpV~~LA 163 (1605)
.+-|--|.|++ +|-|+-||+ |.-|-++.--.+.. .-|| .+.++-
T Consensus 777 QfTY~aHkk~i~~igfL~~lr~i-~ScD~giHl---------WDPFigr~Laq~~dapk~~-------------a~~~ik 833 (1034)
T KOG4190|consen 777 QFTYQAHKKPIHDIGFLADLRSI-ASCDGGIHL---------WDPFIGRLLAQMEDAPKEG-------------AGGNIK 833 (1034)
T ss_pred eeEhhhccCcccceeeeecccee-eeccCccee---------ecccccchhHhhhcCcccC-------------CCceeE
Confidence 45555677766 588888854 77444433211111 1122 344566
Q ss_pred eec--CCCeEEEE-ecCceEEEEecccceEEEEEeecc-ccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCee-
Q 000378 164 CHP--RLPVLYVA-YADGLIRAYNIHTYAVHYTLQLDN-TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM- 238 (1605)
Q Consensus 164 ~~P--~~~vL~~a-~~dg~IR~w~i~t~~v~~tL~~~~-~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m- 238 (1605)
|.| |.+.|..| +++.+|+++|-..+.-.+.+..-| ..--+-++|+|-.|.|.|+++|=..|+|-+-|.-+ -|
T Consensus 834 cl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~---G~v 910 (1034)
T KOG4190|consen 834 CLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN---GKV 910 (1034)
T ss_pred ecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC---Cce
Confidence 664 57777777 999999999999999888777622 22335678999999999999999999999888542 22
Q ss_pred ee------------------------eccceeE-EEE---EEeeCCCCCcccccccccCC
Q 000378 239 IG------------------------MDGSLQV-WKT---RVIINPNRPPMQANFFEPAS 270 (1605)
Q Consensus 239 ~g------------------------~~g~~~~-w~~---rv~~~~~~~~~~a~~~~~a~ 270 (1605)
|- .|-+|-| |.. |..+.-+-||-.|+|.++-|
T Consensus 911 INswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvg 970 (1034)
T KOG4190|consen 911 INSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVG 970 (1034)
T ss_pred eccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccC
Confidence 33 1557777 853 56666777899999998876
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.065 Score=67.50 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=127.3
Q ss_pred ccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEecCCcE
Q 000378 12 RHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 12 ~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
|++ ||.. .|.-+.|.-+++-|-+ .-++-|++|=.-.|+-+-- -+.-+.|++|+|.- ||..|.-.-+||.|
T Consensus 65 QtLeGH~~----sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 65 QTLEGHNA----SVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAV 139 (1189)
T ss_pred hhhccCcc----eEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCE
Confidence 456 8998 8999999999888888 7788999999999987665 34556789999998 77777766777766
Q ss_pred --------EeeccCCC---ceEEEeCCCccccc-cccCceeEeccCCCcceEEecccccc--ceeEEeeeecCCC--Ccc
Q 000378 87 --------RSCDFDTE---QSFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRA--PTK 150 (1605)
Q Consensus 87 --------~~wd~~~~---q~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~--s~~~vgt~eG~~~--~~~ 150 (1605)
|.|.-+.+ -++|..|+|.+.+- .-..+++||-.-.= -|.+.+ +..+ ++.|... |||
T Consensus 140 IVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqg------nF~~Kl~~~c~V--n~tg~~s~~~~k 211 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQG------NFERKLEKDCEV--NGTGIFSNFPTK 211 (1189)
T ss_pred EEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccc------cHHHhhhhceEE--eeeeeecCCCcc
Confidence 67877663 33999999999765 35558998866541 111122 2222 2333222 455
Q ss_pred cccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEec
Q 000378 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 151 ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~ 221 (1605)
|-.-.+-.=+-.---||-|+|+++|+.|-..+-.-.|-..- .-.|.-++-+|+ -++|+|-.|+|.+
T Consensus 212 ia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P--vv~dtgm~~vga---kWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 212 IAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP--VVVDTGMKIVGA---KWNHNGAVLAVCG 277 (1189)
T ss_pred ccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC--eEEecccEeecc---eecCCCcEEEEcc
Confidence 43322221111122389999999999998876554443221 122444666665 4899999999554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.083 Score=66.88 Aligned_cols=162 Identities=18% Similarity=0.155 Sum_probs=106.7
Q ss_pred ceEEEEeccC----Cc-eeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEeCCCccccccccCceeE
Q 000378 42 TYIIEFDTLT----GS-RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVH 116 (1605)
Q Consensus 42 ~~I~l~d~~t----G~-~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih 116 (1605)
.+|.++|+.| |. .+..+..+...+-|++||++-+.++++-.+.+|-.-|+.+.+..+ +++ +
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~----~~~---------~- 361 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF----DGK---------I- 361 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh----hcc---------C-
Confidence 4688888887 43 344477888888888888444777777778888888886533221 122 1
Q ss_pred eccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEE----
Q 000378 117 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY---- 192 (1605)
Q Consensus 117 ~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~---- 192 (1605)
++ .-.++++++=+.. | .-.||.+||....|=..|..|--||+.+.-..|
T Consensus 362 ------~~----------~~~vvaevevGlG----------P-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~ 414 (635)
T PRK02888 362 ------KP----------RDAVVAEPELGLG----------P-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK 414 (635)
T ss_pred ------Cc----------cceEEEeeccCCC----------c-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc
Confidence 22 1233445554554 3 246788999888888899999999999842221
Q ss_pred ---EEe-e---ccccccccceeEeecCCceEEEE---ecCCCeEEeeecCCCCCeeeeeccc
Q 000378 193 ---TLQ-L---DNTIKLLGAGAFAFHPTLEWLFV---GDRRGTLLAWDVSIERPSMIGMDGS 244 (1605)
Q Consensus 193 ---tL~-~---~~~~~~~g~~a~Af~P~g~~l~~---G~~dgtl~~W~vs~~~~~m~g~~g~ 244 (1605)
-++ + -+.-|+.....=--.|||+||++ +|.|+-|-.-++.+|.--+|-|.|-
T Consensus 415 ~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgd 476 (635)
T PRK02888 415 VDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGD 476 (635)
T ss_pred CCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCC
Confidence 111 0 01123333333345899999996 4689999999999999999999774
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.038 Score=74.86 Aligned_cols=209 Identities=16% Similarity=0.239 Sum_probs=132.1
Q ss_pred CCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce----
Q 000378 22 LQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~---- 96 (1605)
+++.+.. -|.+...+. +.+....=|.. +|.-.....+-..|.||-=-|.+ -.-++|+.|++|+.|---..|+
T Consensus 2170 l~~~~~~-~~~s~~~~~~n~~~~~~tq~~-~~~~~~~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~ 2246 (2439)
T KOG1064|consen 2170 LASQSTV-GSFSNRFTPSNLPWLGSTQTS-RGASVMIKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCF 2246 (2439)
T ss_pred ccccccc-ccccccCCcccCCccccceec-ccceeEeecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEe
Confidence 4444444 344444444 54544444553 33444446777788888877743 3668999999999998877665
Q ss_pred ---------EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee-
Q 000378 97 ---------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH- 165 (1605)
Q Consensus 97 ---------~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~- 165 (1605)
...|+.+|..-++ -.||.+ .+ |- .+ +||+.+=-||
T Consensus 2247 rt~g~s~vtr~~f~~qGnk~~i~d~dg~l-------~l--~q----~~---------------------pk~~~s~qchn 2292 (2439)
T KOG1064|consen 2247 RTAGNSRVTRSRFNHQGNKFGIVDGDGDL-------SL--WQ----AS---------------------PKPYTSWQCHN 2292 (2439)
T ss_pred eccCcchhhhhhhcccCCceeeeccCCce-------ee--cc----cC---------------------CcceeccccCC
Confidence 4456666666554 233555 44 55 11 3455555454
Q ss_pred ---cCCC----eEEEE---ecCceEEEEecc-cceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecC--
Q 000378 166 ---PRLP----VLYVA---YADGLIRAYNIH-TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS-- 232 (1605)
Q Consensus 166 ---P~~~----vL~~a---~~dg~IR~w~i~-t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs-- 232 (1605)
-|=. +|+++ ++++.+-+||.- ++..-|. +|-|..||.++||-|.-+.|++|+++|-+++||+-
T Consensus 2293 k~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v----~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2293 KALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV----HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ccccceeeeehhhhccccCCCCCcccchhcccCccccee----eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 2222 33332 568889999853 2222222 25599999999999999999999999999999985
Q ss_pred ----------CCCCeeeee-ccceeEEEEEE----eeCCCCCcccccccccCCcc
Q 000378 233 ----------IERPSMIGM-DGSLQVWKTRV----IINPNRPPMQANFFEPASIE 272 (1605)
Q Consensus 233 ----------~~~~~m~g~-~g~~~~w~~rv----~~~~~~~~~~a~~~~~a~~e 272 (1605)
++..-.-|= .|++.+||.-- .-+|.-+ ..-.||+--|.+
T Consensus 2369 ql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~-ak~gfFr~~g~Q 2422 (2439)
T KOG1064|consen 2369 QLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH-AKQGFFRNIGMQ 2422 (2439)
T ss_pred HHHHHhhhhhhhheeeccCcccceEEEEccccchhhcCchhh-cccchhhhcCce
Confidence 111122222 69999998753 3456555 677788877733
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.2 Score=64.08 Aligned_cols=208 Identities=18% Similarity=0.182 Sum_probs=135.9
Q ss_pred CCCCceeEeCC--Ccceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeec---CCCCceEEEEecCCcEEeeccCC
Q 000378 21 PLQPHEAAFHP--NQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYS---PTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 21 ~~~v~~~aF~P--~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~S---P~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
|+..|---||| .+-+||+ .+.++|.+||..+++.+-- -.+..+|.-|.|= +++.++|+|+.--.+|-|||.+|
T Consensus 65 p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 65 PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 34444445564 3566777 7889999999999998887 6677899999998 43449999999999999999999
Q ss_pred CceEEEeCCCccccc-cccC--ceeEeccCCCcceEEe-cccc----ccceeEEeeeecCCCCcccccccCCC-------
Q 000378 94 EQSFVLHSPEKKMES-ISVD--TEVHLALTPLQPVVFF-GFHR----RMSVTVVGTVEGGRAPTKIKTDLKKP------- 158 (1605)
Q Consensus 94 ~q~~v~~sp~~~~~~-~s~d--~~ih~a~t~~~l~vw~-~~~~----~~s~~~vgt~eG~~~~~~ik~d~kkp------- 158 (1605)
++-.--|+=.-.++. .+-| .-=|+-+.-++-.|+- -+-. ...++.+..-.-|+++-++|.+--..
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 766433333333333 2333 2223333333321111 0000 22444554555566655554432111
Q ss_pred --------ceEeeeecC-CCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCc--eEEEEecCCCeEE
Q 000378 159 --------IVNLACHPR-LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL--EWLFVGDRRGTLL 227 (1605)
Q Consensus 159 --------V~~LA~~P~-~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g--~~l~~G~~dgtl~ 227 (1605)
-..+||||- --.|+..+--++ -+.|.+=-+.+++.-+ -..||-=+-.=||+ +-||++-.+|+|.
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prel-lv~dle~~~~l~vvpi----er~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPREL-LVFDLEYECCLAVVPI----ERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccce-EEEcchhhceeEEEEe----ccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 234788874 457888885554 4999998888888877 77888877776766 5688999999999
Q ss_pred eeecCC
Q 000378 228 AWDVSI 233 (1605)
Q Consensus 228 ~W~vs~ 233 (1605)
+|--..
T Consensus 300 irvrk~ 305 (1062)
T KOG1912|consen 300 IRVRKE 305 (1062)
T ss_pred EEEeec
Confidence 997663
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.21 Score=61.20 Aligned_cols=161 Identities=18% Similarity=0.118 Sum_probs=110.5
Q ss_pred Ccceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCC-cEEeeccCCCce-----------EE
Q 000378 32 NQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC-TIRSCDFDTEQS-----------FV 98 (1605)
Q Consensus 32 ~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~-tI~~wd~~~~q~-----------~v 98 (1605)
+|-++|. |-|+ .++++.--|-.|.+- +...|.=.-++- ++.-+|.|-.|+ .|-.+|.++... +|
T Consensus 331 ~Gd~ia~VSRGk-aFi~~~~~~~~iqv~-~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av 407 (668)
T COG4946 331 NGDYIALVSRGK-AFIMRPWDGYSIQVG-KKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV 407 (668)
T ss_pred CCcEEEEEecCc-EEEECCCCCeeEEcC-CCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence 6777777 7774 566777767666652 222343333332 456788888998 999999999532 89
Q ss_pred EeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEE----
Q 000378 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA---- 174 (1605)
Q Consensus 99 ~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a---- 174 (1605)
.-||||+.+..+.| .. .+||.. ..++++- -++--+ .-=|+..++||++.|+|=|
T Consensus 408 ~vs~dGK~~vvaNd-r~-------el~vid----idngnv~-~idkS~---------~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 408 KVSPDGKKVVVAND-RF-------ELWVID----IDNGNVR-LIDKSE---------YGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred EEcCCCcEEEEEcC-ce-------EEEEEE----ecCCCee-Eecccc---------cceeEEEEEcCCceeEEEecCcc
Confidence 99999999888888 22 457776 4444433 122111 2258999999999999965
Q ss_pred ecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecC
Q 000378 175 YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1605)
Q Consensus 175 ~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~ 222 (1605)
|.-..||+||+.++.+- ..+- --+.=-|=||-|||+.|--=|+
T Consensus 466 y~tq~Iklydm~~~Kiy-~vTT----~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 466 YYTQSIKLYDMDGGKIY-DVTT----PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeeeeEEEEecCCCeEE-EecC----CcccccCcccCCCCcEEEEEec
Confidence 45557999999998865 4444 3445567899999999985443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.049 Score=64.37 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=117.2
Q ss_pred cCCCCCCCCCceeEeCCCcceeeeecCceEEEEeccC-Cceeeec--------cCCcceeeeeecCCCCceEEEEecCCc
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLT-GSRIASI--------DINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~t-G~~~~~l--------~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
.|.. -+++++|..|+..+.+|.|=.|-||...- ..---+. ++.--+++--|+|+--.+++=-+.-|+
T Consensus 162 aHty----hiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 162 AHTY----HINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred ccee----EeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 3666 78999999999999999999999998641 0001112 223345777899988899999999999
Q ss_pred EEeeccCCC-----ce-----------------------EEEeCCCccccccccC-ceeEeccCCCcceEEeccccc-cc
Q 000378 86 IRSCDFDTE-----QS-----------------------FVLHSPEKKMESISVD-TEVHLALTPLQPVVFFGFHRR-MS 135 (1605)
Q Consensus 86 I~~wd~~~~-----q~-----------------------~v~~sp~~~~~~~s~d-~~ih~a~t~~~l~vw~~~~~~-~s 135 (1605)
|||||.-.- +. -|-||+.||++ .++| -+| ++ |. . |.
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryi-lsRDyltv-------k~--wD----~nme 303 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYI-LSRDYLTV-------KL--WD----LNME 303 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEE-EEecccee-------EE--Ee----cccc
Confidence 999998721 11 78999999999 7778 888 87 77 5 77
Q ss_pred eeEEeeeecCCCCc-cc----ccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEE
Q 000378 136 VTVVGTVEGGRAPT-KI----KTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 136 ~~~vgt~eG~~~~~-~i----k~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~ 191 (1605)
.++|.|..=|-... || -+|-=-.=-...|+-++-+..+||-....|.|+...|...
T Consensus 304 ~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 304 AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 77887766665410 00 0111112245788889999999999999999998888766
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.035 Score=65.56 Aligned_cols=165 Identities=18% Similarity=0.249 Sum_probs=115.5
Q ss_pred cccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcE
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
+-++ ||.+ .+-|++|-|.+++|-+ +.|..|..||.--.+-+.- .+|...|..+.|-+ --..|.|..+|+-|
T Consensus 190 i~~~~~h~~----~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 190 ITTFNGHTG----EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGI 264 (404)
T ss_pred EEEEcCccc----ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeE
Confidence 3344 7888 8999999999999999 9999999999765555554 89999999999998 33589999999999
Q ss_pred EeeccCCCce--------------------------------EEEeC--CCccccc-cccC-ceeEeccCCCcceEEecc
Q 000378 87 RSCDFDTEQS--------------------------------FVLHS--PEKKMES-ISVD-TEVHLALTPLQPVVFFGF 130 (1605)
Q Consensus 87 ~~wd~~~~q~--------------------------------~v~~s--p~~~~~~-~s~d-~~ih~a~t~~~l~vw~~~ 130 (1605)
-+||.+..+. -+.|. .=|+-.- .+++ .++ -|.+=|+|
T Consensus 265 ~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~-------~p~mg~e~ 337 (404)
T KOG1409|consen 265 VVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSS-------YPTMGFEF 337 (404)
T ss_pred EEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccc-------ccccccee
Confidence 9999987422 11111 1111111 2333 233 24334444
Q ss_pred ccccceeEEeeee-cCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEeccc
Q 000378 131 HRRMSVTVVGTVE-GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT 187 (1605)
Q Consensus 131 ~~~~s~~~vgt~e-G~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t 187 (1605)
-.|-...--.+++ --+.|+-|=.|.|-.|+.+-+--...+|++++-|++|++||+.+
T Consensus 338 ~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 338 SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 4333222222211 12356777788888999888888999999999999999999865
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.81 Score=54.74 Aligned_cols=181 Identities=23% Similarity=0.216 Sum_probs=126.9
Q ss_pred CCCceeEeCCCcceeee--ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEe--cCCcEEeeccCCCce-
Q 000378 22 LQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL--EDCTIRSCDFDTEQS- 96 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~--~D~tI~~wd~~~~q~- 96 (1605)
..+++++++++|..+.+ .-..+|...|..|-+.+.+...+.--..++++|.++++-|+-. .+.+|-.-|-.+...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 47889999999996666 3368999999999999999888888899999996667777777 367777777766422
Q ss_pred ----------EEEeCCCcccccc--ccCceeEeccCCCcceEEeccccccceeE--------EeeeecCCCCcccccccC
Q 000378 97 ----------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTV--------VGTVEGGRAPTKIKTDLK 156 (1605)
Q Consensus 97 ----------~v~~sp~~~~~~~--s~d~~ih~a~t~~~l~vw~~~~~~~s~~~--------vgt~eG~~~~~~ik~d~k 156 (1605)
-++++|+|+.+-. +.+++| .+++ .....+ ++.+.+.
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v---------~vi~----~~~~~v~~~~~~~~~~~~~~P----------- 209 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTV---------SVID----TSGNSVVRGSVGSLVGVGTGP----------- 209 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeE---------EEEe----CCCcceeccccccccccCCCC-----------
Confidence 6778888885542 345555 2233 111111 1112222
Q ss_pred CCceEeeeecCCCeEEEEecC---ceEEEEecccceEEEE-EeeccccccccceeEeecCCceEEEEecCC-CeEEeeec
Q 000378 157 KPIVNLACHPRLPVLYVAYAD---GLIRAYNIHTYAVHYT-LQLDNTIKLLGAGAFAFHPTLEWLFVGDRR-GTLLAWDV 231 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a~~d---g~IR~w~i~t~~v~~t-L~~~~~~~~~g~~a~Af~P~g~~l~~G~~d-gtl~~W~v 231 (1605)
..+++.|++..+|+.-.. +.|...|..++.+..+ +.. -...-..++++|+|.++.+.... +++.+=|-
T Consensus 210 ---~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~----~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 210 ---AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV----GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ---ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc----ccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 458999999999998765 4899999999988854 121 11134468999999999988644 66666665
Q ss_pred CC
Q 000378 232 SI 233 (1605)
Q Consensus 232 s~ 233 (1605)
.+
T Consensus 283 ~~ 284 (381)
T COG3391 283 AT 284 (381)
T ss_pred CC
Confidence 53
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.18 Score=58.52 Aligned_cols=173 Identities=13% Similarity=0.004 Sum_probs=112.7
Q ss_pred CCcceeeeecCceEEEEeccCCceeee-ccCCcceeeeeecCCCC----ceEEEEecCCcEEeeccCCCce---------
Q 000378 31 PNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSG----HAVVAILEDCTIRSCDFDTEQS--------- 96 (1605)
Q Consensus 31 P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g----~~laa~~~D~tI~~wd~~~~q~--------- 96 (1605)
|.+..+-.+-.+.+.+|+.-+-.+--+ .. .-|.|-|..- .+||+|.+-|-..+|...|.++
T Consensus 41 ~~s~~~ni~~t~sv~i~~~y~N~~~iv~~y-----~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn 115 (344)
T KOG4532|consen 41 PPSQPINISKTISVPINSHYSNPKGIVEFY-----TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN 115 (344)
T ss_pred CCCccccccceeeeEeccccCCchhhEEee-----ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccc
Confidence 334444445556677777766552211 11 4466776432 6899999999999999998644
Q ss_pred ---------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCC---ceEeee
Q 000378 97 ---------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP---IVNLAC 164 (1605)
Q Consensus 97 ---------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkp---V~~LA~ 164 (1605)
|..++|-.- .|.|.|+ +++ +++|... |--+--| +.+++.
T Consensus 116 n~v~~~~r~cd~~~~~~i---~sndht~---------------------k~~-~~~~~s~----~~~~h~~~~~~ns~~~ 166 (344)
T KOG4532|consen 116 NDVTLVKRYCDLKFPLNI---ASNDHTG---------------------KTM-VVSGDSN----KFAVHNQNLTQNSLHY 166 (344)
T ss_pred cchhhhhhhcccccceee---ccCCcce---------------------eEE-EEecCcc----cceeeccccceeeeEE
Confidence 222222111 2444444 344 5666555 2222223 789999
Q ss_pred ecCCCeEEEEecCceEEEEecccceEEEEEe--e-ccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeee
Q 000378 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 165 ~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~--~-~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~ 241 (1605)
+||+.|+++-..-+.|-+|.|-+-... .+. + +++ .+--+..|+-+-+-.|||.-||++.+|||---++-|-=+
T Consensus 167 snd~~~~~~Vgds~~Vf~y~id~~sey-~~~~~~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 167 SNDPSWGSSVGDSRRVFRYAIDDESEY-IENIYEAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred cCCCceEEEecCCCcceEEEeCCccce-eeeeEecccC---CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 999999999999999999999765432 222 2 111 122367889999999999999999999999777777655
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.054 Score=68.79 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHchHHHHHHhhccCCCCccccchHHHHHHHHHh
Q 000378 1426 RGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHL 1476 (1605)
Q Consensus 1426 E~~EvkelI~iCREYilALsLL~ELeRr~~L~~~~d~~kn~~R~LELAAYF 1476 (1605)
--+|+|-.|--|-|-+++.++||-|- +. ++. ++..++..|+-+-|
T Consensus 714 pyeeik~~ILevne~vLse~~iqnLi-k~-lPe----~E~l~~L~e~Kaey 758 (1102)
T KOG1924|consen 714 PYEEIKNVILEVNEDVLSESMIQNLI-KH-LPE----QEQLNKLSELKAEY 758 (1102)
T ss_pred CHHHHHHHHhhccHHHHHHHHHHHHH-Hh-CCC----HHHHHHHHHHHHhc
Confidence 34678888888999999999988772 33 531 23334555554433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.37 Score=61.20 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=104.9
Q ss_pred CCceeEeCCCcceeeeec-------C--ceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEec-----------
Q 000378 23 QPHEAAFHPNQALIAVAI-------G--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE----------- 82 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~-------g--~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~----------- 82 (1605)
.+...+.||||+.+|.-. | .+|.+++. .|..... --+....+=.||| ||..|+....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~l-t~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQV-LEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceee-ecCCCCCCceECC-CCCceEEEecCcceEEEeccC
Confidence 678999999999999844 3 35666664 3333332 2344578889999 6665555532
Q ss_pred -CCcEEeeccCCC---------ceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccc
Q 000378 83 -DCTIRSCDFDTE---------QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK 152 (1605)
Q Consensus 83 -D~tI~~wd~~~~---------q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik 152 (1605)
++.|+..+++.. =..+..||||+.++.-.+++|++|- |-. ...+. . .+ ++|..+=
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~------Vvr----~~~G~-~-~l---~~~~~l~ 492 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAV------VEQ----TEDGQ-Y-AL---TNPREVG 492 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEE------EEe----CCCCc-e-ee---cccEEee
Confidence 234444466542 1278889999999854456663321 011 11221 1 12 2333344
Q ss_pred cccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEE-eeccccccccceeEeecCCceEEEEecCCCeEEeeec
Q 000378 153 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL-QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 153 ~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL-~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
.++--.+.+|++.+++.+ ++++.++-..+|.++-.-..-++ ...| ...++.++|=+|+ -|++.+.+| +|++
T Consensus 493 ~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n--~~~~v~~vaa~~~--~iyv~~~~g---~~~l 564 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRN--LSAPVVAVAASPS--TVYVTDARA---VLQL 564 (591)
T ss_pred cccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccccCCCC--ccCceEEEecCCc--eEEEEcCCc---eEEe
Confidence 555557789999999995 47776554444544322111122 1111 1346678888874 466778888 4555
Q ss_pred C
Q 000378 232 S 232 (1605)
Q Consensus 232 s 232 (1605)
+
T Consensus 565 ~ 565 (591)
T PRK13616 565 P 565 (591)
T ss_pred c
Confidence 4
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.37 Score=57.59 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=102.3
Q ss_pred CCceeEeCCCcceeee---ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC-Cce--
Q 000378 23 QPHEAAFHPNQALIAV---AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT-EQS-- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~---a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~-~q~-- 96 (1605)
..+..++|.||+++.+ +=-+.|.+-|...++.+..+++.+ |.+.| |.+.....+.|.||++-...++. ++.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEE-EEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEE-ecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 6688999999999999 667889999999888877665543 44555 43335688999999999999996 322
Q ss_pred --EEEeCCCccccc--------------cccCceeEec-c-----CCCcceE----------E-------ecccccccee
Q 000378 97 --FVLHSPEKKMES--------------ISVDTEVHLA-L-----TPLQPVV----------F-------FGFHRRMSVT 137 (1605)
Q Consensus 97 --~v~~sp~~~~~~--------------~s~d~~ih~a-~-----t~~~l~v----------w-------~~~~~~~s~~ 137 (1605)
.-.|.||..-+- +|=.|.|+-+ | .++++|= | .++|+...+.
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 224444432111 1222233221 1 1133321 1 2445544333
Q ss_pred EEe----eeecCCCCcc-------------cccccCCCceEeeee-cCCCeEEEEec-CceEEEEecccceEEEEEee
Q 000378 138 VVG----TVEGGRAPTK-------------IKTDLKKPIVNLACH-PRLPVLYVAYA-DGLIRAYNIHTYAVHYTLQL 196 (1605)
Q Consensus 138 ~vg----t~eG~~~~~~-------------ik~d~kkpV~~LA~~-P~~~vL~~a~~-dg~IR~w~i~t~~v~~tL~~ 196 (1605)
.|- .-.-|++|-. -+-+|+.||.+|+.+ -+-|.||..+. |+.+.+||..||+.+-++..
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 331 1223444321 133677899999999 77889998765 79999999999988855544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.74 Score=58.75 Aligned_cols=193 Identities=8% Similarity=0.034 Sum_probs=121.8
Q ss_pred eeEeCCCcceeee--ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEec----CCcEEeeccCCCceEEE
Q 000378 26 EAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE----DCTIRSCDFDTEQSFVL 99 (1605)
Q Consensus 26 ~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~----D~tI~~wd~~~~q~~v~ 99 (1605)
.+=++|||+.|-. -..+.|...|+.|-..+..+..+..-..++++| ||..+.+.+. ..++..-|..+..-.+.
T Consensus 197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 4567899998865 556678889999887777777777778999999 7777777763 34666666655556888
Q ss_pred eCCCccccccccCcee-EeccCCCcceEEeccccccc-eeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEec-
Q 000378 100 HSPEKKMESISVDTEV-HLALTPLQPVVFFGFHRRMS-VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA- 176 (1605)
Q Consensus 100 ~sp~~~~~~~s~d~~i-h~a~t~~~l~vw~~~~~~~s-~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~- 176 (1605)
|++.+ +++...|+.. =+ .--+-.|+++..+.+. ..++.+|.= -|-..++++||||..+|++..
T Consensus 276 fni~~-iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-----------GKsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIAR-IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-----------PKNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchHH-HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-----------CCCccceEECCCCCEEEEeCCC
Confidence 88775 2333333322 00 0001133442221110 123333322 234689999999999999886
Q ss_pred CceEEEEecccceEEE--EEeeccccccc---cce--eEeecCCceEEEEecCCCeEEeeecCC
Q 000378 177 DGLIRAYNIHTYAVHY--TLQLDNTIKLL---GAG--AFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~~--tL~~~~~~~~~---g~~--a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+.+|-++|+.+....+ .|.-+.+|+.. |-| -.+|.++|.-..+=--|..|--|++..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999999977532 11111111111 333 578888987555666777888888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.47 Score=60.24 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=96.4
Q ss_pred ceeeeecCceEEEEeccCCceeee---ccCCcceeeeeecCCCCceEEEEe------cCC--cEEeeccCCCc-------
Q 000378 34 ALIAVAIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVVAIL------EDC--TIRSCDFDTEQ------- 95 (1605)
Q Consensus 34 allA~a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~laa~~------~D~--tI~~wd~~~~q------- 95 (1605)
.+.++. |..+...+.- ...++ ++-...+.+.+.|| ||..+|... .|. .|.+++...+.
T Consensus 322 ~~~~v~-~G~l~~~~~~--~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~ 397 (591)
T PRK13616 322 GLHALV-DGSLVSVDGQ--GVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH 397 (591)
T ss_pred cceEEE-CCeEEEecCC--CeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC
Confidence 455666 4455554422 22233 33344678999999 888887776 354 45555653321
Q ss_pred --eEEEeCCCccccccccCc-eeEeccCCCcceEEeccccccceeEE-eeeecCCCCcccccccCCCceEeeeecCCCeE
Q 000378 96 --SFVLHSPEKKMESISVDT-EVHLALTPLQPVVFFGFHRRMSVTVV-GTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1605)
Q Consensus 96 --~~v~~sp~~~~~~~s~d~-~ih~a~t~~~l~vw~~~~~~~s~~~v-gt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL 171 (1605)
++-.|||||+.+..-+|+ .+. +. .. +..+.... -.+.|+.. .+ +++.+|.+|++||||..+
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~------~v--~~---~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~Ri 462 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVV------RV--IR---DPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRA 462 (591)
T ss_pred CCCCceECCCCCceEEEecCcceE------EE--ec---cCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEE
Confidence 145566777766643232 330 00 11 00111111 13554433 12 788899999999999999
Q ss_pred EEEecCceEEE---EecccceEEEEEeecc---cccccc-ceeEeecCCceEEEEecCCCeEEeeecC
Q 000378 172 YVAYADGLIRA---YNIHTYAVHYTLQLDN---TIKLLG-AGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 172 ~~a~~dg~IR~---w~i~t~~v~~tL~~~~---~~~~~g-~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
|.-. +|.|.+ =.-..|+ ++|.. + +.-+.+ +.++++.+++..+ ++..++---+|.++
T Consensus 463 A~i~-~g~v~Va~Vvr~~~G~--~~l~~-~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 463 AMII-GGKVYLAVVEQTEDGQ--YALTN-PREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEE-CCEEEEEEEEeCCCCc--eeecc-cEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 8877 565544 2224454 34411 1 012233 4778999999954 66555555567666
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.19 Score=60.33 Aligned_cols=155 Identities=16% Similarity=0.125 Sum_probs=96.9
Q ss_pred CcceeeeeecCCCCceEEEEecCCcEEeeccCCC----ceEEEeCCCccccc---cccCceeEeccCCCcceEEeccccc
Q 000378 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE----QSFVLHSPEKKMES---ISVDTEVHLALTPLQPVVFFGFHRR 133 (1605)
Q Consensus 61 ~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~----q~~v~~sp~~~~~~---~s~d~~ih~a~t~~~l~vw~~~~~~ 133 (1605)
+-......+|| +|..||++-.+..+++.|++.. +.-..+.=+.+--+ +..|+.+ .|..++-
T Consensus 62 ~~a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv---------~v~dkag-- 129 (390)
T KOG3914|consen 62 SLAPALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSV---------LVADKAG-- 129 (390)
T ss_pred hccccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceE---------EEEeecC--
Confidence 33445566777 8888888888888777777662 12222332333233 3555565 3344222
Q ss_pred cceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEec-ccceEEEEEeeccccccccceeEeecC
Q 000378 134 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI-HTYAVHYTLQLDNTIKLLGAGAFAFHP 212 (1605)
Q Consensus 134 ~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i-~t~~v~~tL~~~~~~~~~g~~a~Af~P 212 (1605)
.++.+.+++-+...-+.=.-|-+=|..+|++||++.+.++.-|+-||+=+. +++.+.--..+ |---|..++--|
T Consensus 130 -D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG----H~eFVS~isl~~ 204 (390)
T KOG3914|consen 130 -DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG----HKEFVSTISLTD 204 (390)
T ss_pred -CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc----cHhheeeeeecc
Confidence 333333344222211222222237899999999999999999999997543 34444433455 777888888766
Q ss_pred CceEEEEecCCCeEEeeecCC
Q 000378 213 TLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 213 ~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+ +.|.+|+-|+||++||.-.
T Consensus 205 ~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 205 N-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred C-ceeeecCCCCcEEEEeccc
Confidence 5 5599999999999999874
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.1 Score=51.57 Aligned_cols=191 Identities=19% Similarity=0.233 Sum_probs=92.2
Q ss_pred CCceeEeCCC-cceeee-ecCceEEEEeccCCceeeeccCC--cceeeeeecCCCCceEEEEecCCcEEeeccCCCc--e
Q 000378 23 QPHEAAFHPN-QALIAV-AIGTYIIEFDTLTGSRIASIDIN--SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ--S 96 (1605)
Q Consensus 23 ~v~~~aF~P~-gallA~-a~g~~I~l~d~~tG~~~~~l~~~--~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q--~ 96 (1605)
-+.+++|.|+ +.|+|| .-...|.++| ++|+.++.+... .-.-.|+|.- +|..+++-=.++++...++++.. .
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els-~~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELS-LDGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEE-TT--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEc-CCCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccccc
Confidence 4899999997 557777 6778899999 579999985444 3457889974 55444433348999998884421 1
Q ss_pred --------EEEeC--CCccccccccC---ceeEec--cCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceE
Q 000378 97 --------FVLHS--PEKKMESISVD---TEVHLA--LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN 161 (1605)
Q Consensus 97 --------~v~~s--p~~~~~~~s~d---~~ih~a--~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~ 161 (1605)
.+-+. .....+.++=| .+.=++ -.|.+++-|+++.......+. ...++.+ .+-.+ +-+-+
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~-~~~~~~~---~~~~~-~d~S~ 175 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS-DDQDLDD---DKLFV-RDLSG 175 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE-E-HHHH----HT--S-S---E
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec-ccccccc---cccee-ccccc
Confidence 11111 11112222222 111000 011122222222211111111 1111111 11222 34789
Q ss_pred eeeecCCC-eEEEEecCceEEEEecccceEEEEEeecccccc-----ccceeEeecCCceEEEEec
Q 000378 162 LACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL-----LGAGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 162 LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~-----~g~~a~Af~P~g~~l~~G~ 221 (1605)
|++||+.. +|+-....+.|-.+| .+|.++-.+.++...|. .-.-.+||.|+|.+.+|..
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 99998765 555566677888899 88998888888655543 2355789999997766654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.70 E-value=3.8 Score=48.76 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=56.3
Q ss_pred cccccccCCCCCCCCCceeEeCCCcceeeee--cC----ceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEe
Q 000378 9 LDLRHVGRGDHKPLQPHEAAFHPNQALIAVA--IG----TYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAIL 81 (1605)
Q Consensus 9 ~~l~~~g~~~~~~~~v~~~aF~P~gallA~a--~g----~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~ 81 (1605)
+|...+..+.. ...+...++||||++||.+ .+ .+|.++|+.||+.+.- +..... ..|+|++ ||+.+.-..
T Consensus 112 lD~n~l~~~~~-~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~-d~~~~~y~~ 188 (414)
T PF02897_consen 112 LDPNELAKDGG-YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSD-DGKGFFYTR 188 (414)
T ss_dssp EEGGGGSTTSS--EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECT-TSSEEEEEE
T ss_pred EcchHhhccCc-eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeC-CCCEEEEEE
Confidence 35555522221 2255578999999999983 32 4699999999987765 333322 2399999 877776666
Q ss_pred cCC-----------cEEeeccCCCc
Q 000378 82 EDC-----------TIRSCDFDTEQ 95 (1605)
Q Consensus 82 ~D~-----------tI~~wd~~~~q 95 (1605)
.|. .|+.|++.|.+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-G
T ss_pred eCcccccccCCCCcEEEEEECCCCh
Confidence 544 38999999853
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.081 Score=65.83 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=58.3
Q ss_pred CCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 21 PLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
+.+|-|.|++|+...|+. -.|+.|++||..++.-..+ ...=..+-+||.| +|.++++|++-|-|..||...
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence 347899999999999999 7899999999987754444 3333457899999 889999999999999999854
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.81 Score=61.16 Aligned_cols=184 Identities=20% Similarity=0.255 Sum_probs=111.5
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCceeee-----------------------ccCC------------------
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-----------------------IDIN------------------ 61 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-----------------------l~~~------------------ 61 (1605)
.|.|++||||+++||..-|+.+.+++-.+=..|+- ..++
T Consensus 111 GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~ 190 (1265)
T KOG1920|consen 111 GISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE 190 (1265)
T ss_pred ceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccccc
Confidence 78999999999999997776776665442111111 1111
Q ss_pred -----cceeeeeecCCCCceEEEE----ecC-CcEEeeccCC------C-----ceEEEeCCCcccccc----ccCceeE
Q 000378 62 -----SPVVRMAYSPTSGHAVVAI----LED-CTIRSCDFDT------E-----QSFVLHSPEKKMESI----SVDTEVH 116 (1605)
Q Consensus 62 -----~~v~~lA~SP~~g~~laa~----~~D-~tI~~wd~~~------~-----q~~v~~sp~~~~~~~----s~d~~ih 116 (1605)
+.=+++.|-= ||+..|+. ..| -+||.||.+- | +.++++-|.|-.++. .+|.+|
T Consensus 191 ~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I- 268 (1265)
T KOG1920|consen 191 QIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI- 268 (1265)
T ss_pred chhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcE-
Confidence 1112255555 77666662 234 7999999981 1 459999999999983 444545
Q ss_pred eccCCCcceEEeccccccceeEEeeeecCCCCccccccc-CCCceEeeeecCCCeEEE---EecCceEEEEecccceEEE
Q 000378 117 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL-KKPIVNLACHPRLPVLYV---AYADGLIRAYNIHTYAVHY 192 (1605)
Q Consensus 117 ~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~-kkpV~~LA~~P~~~vL~~---a~~dg~IR~w~i~t~~v~~ 192 (1605)
+|| -. +..-|+. -.++-.+ .++|.+|++.-++-+||+ .-....|++|.+.||. +
T Consensus 269 ---------vff----Er------NGL~hg~-f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh--W 326 (1265)
T KOG1920|consen 269 ---------VFF----ER------NGLRHGE-FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH--W 326 (1265)
T ss_pred ---------EEE----ec------CCccccc-cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE--E
Confidence 466 11 1122321 1122222 234999999999999999 7766779999999984 3
Q ss_pred EEeeccccccccceeEeecCCce-EEEEecCCCeEEeeecC
Q 000378 193 TLQLDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 193 tL~~~~~~~~~g~~a~Af~P~g~-~l~~G~~dgtl~~W~vs 232 (1605)
.|.- .+.-.+..-+-+||.-+ .|.+--.+|-..+.|..
T Consensus 327 YLKq--~l~~~~~~~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 327 YLKQ--ELQFSQKALLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEE--EEeccccccccccCCCceeEEEEecCCcEEEEEEE
Confidence 3332 11222333367777544 23344466666665554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.36 Score=62.73 Aligned_cols=317 Identities=19% Similarity=0.202 Sum_probs=186.0
Q ss_pred cceeee-ecCceEEEEeccCCceeeeccCCc-ceeeeeecCCCCceEEEEecCCcEEeeccCCCc---eEEEeC------
Q 000378 33 QALIAV-AIGTYIIEFDTLTGSRIASIDINS-PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ---SFVLHS------ 101 (1605)
Q Consensus 33 gallA~-a~g~~I~l~d~~tG~~~~~l~~~~-~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q---~~v~~s------ 101 (1605)
+-.+.. +.-..|..+|..|+++++....++ .|.=|.++- ..+-.|..-|+|-+=|..+.+ +..||+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN---RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecC---cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 344455 777889999999999999988877 678888864 689999999999999999854 466666
Q ss_pred -CCccccc--cccCceeEeccCC-CcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCC-eEEEEec
Q 000378 102 -PEKKMES--ISVDTEVHLALTP-LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYA 176 (1605)
Q Consensus 102 -p~~~~~~--~s~d~~ih~a~t~-~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~-vL~~a~~ 176 (1605)
=.|..+. +-+-+.--+++-| ++- |+ .-.-..+-.+.=+.+|+ =|-|||-.+ +|+|.|-
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkV--YD----LRmmral~PI~~~~~P~-----------flrf~Psl~t~~~V~S~ 286 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKV--YD----LRMMRALSPIQFPYGPQ-----------FLRFHPSLTTRLAVTSQ 286 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhh--hh----hhhhhccCCcccccCch-----------hhhhcccccceEEEEec
Confidence 3344443 3233343466666 333 55 22222332455566643 345888765 6889998
Q ss_pred CceEEEEecccceEE--EEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEee
Q 000378 177 DGLIRAYNIHTYAVH--YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVII 254 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~--~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~ 254 (1605)
-|..-+-|..+-... -+...|+ -..|+.+|-+|++|+-++.|+++|-|.+|- +.+.|+.
T Consensus 287 sGq~q~vd~~~lsNP~~~~~~v~p--~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~F---------------- 347 (1118)
T KOG1275|consen 287 SGQFQFVDTATLSNPPAGVKMVNP--NGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQF---------------- 347 (1118)
T ss_pred ccceeeccccccCCCccceeEEcc--CCCcceeEEecCCCceEEEecccCcEeeec-CCCCCcc----------------
Confidence 888877773322221 1223311 123577899999999999999999999998 6666653
Q ss_pred CCCCCcccccccccCCccccccceeeccCCCcceecC-----Ccccc-cc-cccccchhhhhhhhccCCccccchhhHhH
Q 000378 255 NPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPL-----PRVRA-LE-VHPRLNLAVLLFANFTGGDNIKNRAAYTR 327 (1605)
Q Consensus 255 ~~~~~~~~a~~~~~a~~es~d~~~il~~~~g~~vyp~-----p~~~~-~~-~h~~~n~~~l~~~~~~~~~~~~~~~~~~~ 327 (1605)
|++.-+. -|=.| -|.|+- .+ -=-++-||| |--.+ ++ --|+-+. +.+ | .+.| ..+.
T Consensus 348 n~~s~~t--~fa~p-~v~~~~--~l---si~D~t~PLsSI~lP~~~d~LlSdWP~~l~----~~~--g---~~~~-~~~i 409 (1118)
T KOG1275|consen 348 NEYSRET--EFADP-PVTSLP--PL---SIDDTTQPLSSIGLPYYQDPLLSDWPTELT----QIV--G---RRRN-PPTI 409 (1118)
T ss_pred CCCcccc--ccCCC-CCCCCC--cc---cccCCcccccccCCCccCchhhhcCcHHHh----hhc--c---cccC-CCCC
Confidence 2221111 11111 222210 00 012233443 42222 11 1122211 111 0 1111 1222
Q ss_pred hhhhHHHHHHhhccCCchHHHHhhhccCCCcccccchHHHHHHHHHHhcCCcceeehhhhHHHhhhccccccccCCCC--
Q 000378 328 EGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKSAP-- 405 (1605)
Q Consensus 328 ~~r~~~~~~~~~~~~s~~~~~~~~l~~~~s~g~~~~h~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p-- 405 (1605)
.....-+..+|+-.+-.+- +-++.++++++.=-|.++.+. --++++.|+++++ ||-|...-|
T Consensus 410 ~~ev~s~~~~~~~~~~~~N------~k~~~rN~iPy~~~q~d~~~~---s~s~~~~s~~~~e-------~~~g~~~Vpk~ 473 (1118)
T KOG1275|consen 410 DTEVKSIHKLQGIIGPRPN------PKLKRRNAIPYFFEQRDLIEA---SGSHGEGSAAPTE-------EERGKIKVPKL 473 (1118)
T ss_pred ChHHHhhhhhccccccCCC------hhhhhccCCchhhhhcchhhh---ccCCCcCcccchh-------hcccccccChh
Confidence 2233445556665543322 456889999999999999998 6788999999998 343333333
Q ss_pred CcccceEEeecCCCCCCCCC
Q 000378 406 ISRLPLITIFDSKHQLKDIP 425 (1605)
Q Consensus 406 ~~~l~~~~~~d~~~~~~d~p 425 (1605)
-+|+||.- +|-..+||-
T Consensus 474 Y~k~~lky---sk~G~edFD 490 (1118)
T KOG1275|consen 474 YRKVPLKY---SKFGTEDFD 490 (1118)
T ss_pred hcccceee---cccccccCC
Confidence 35666543 455555664
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.52 Score=55.30 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=94.3
Q ss_pred cccccc-cCCCCCCCCCceeEeCCCcceeeeecC------ceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEE
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIG------TYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g------~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa 79 (1605)
.+-||. |||+ |||||+||-+.-| .-|=+||+..|=...- -.++-.=+-|.+.+ ||.+||.
T Consensus 110 ~~~RHfyGHGv----------fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvv 178 (366)
T COG3490 110 QEGRHFYGHGV----------FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVV 178 (366)
T ss_pred ccCceeecccc----------cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEE
Confidence 456888 9998 9999999988433 3588999885533222 34444457888999 8877665
Q ss_pred EecCCcEEee--------ccCCCceE-EEeC-CCcccc-----------------ccccCceeEeccCCCcceEEecccc
Q 000378 80 ILEDCTIRSC--------DFDTEQSF-VLHS-PEKKME-----------------SISVDTEVHLALTPLQPVVFFGFHR 132 (1605)
Q Consensus 80 ~~~D~tI~~w--------d~~~~q~~-v~~s-p~~~~~-----------------~~s~d~~ih~a~t~~~l~vw~~~~~ 132 (1605)
. +|-|+-- |+++-|++ |+-+ -+|..| ++..|+|| |||-.-
T Consensus 179 a--nGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv-----------wfgcQy 245 (366)
T COG3490 179 A--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV-----------WFGCQY 245 (366)
T ss_pred e--CCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE-----------EEEEEe
Confidence 3 4545444 44444553 3333 222222 23455555 997655
Q ss_pred ccceeE----EeeeecCCCCccccc------ccCCCceEeeeecCCCeEEEEe-cCceEEEEecccceEEE
Q 000378 133 RMSVTV----VGTVEGGRAPTKIKT------DLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHY 192 (1605)
Q Consensus 133 ~~s~~~----vgt~eG~~~~~~ik~------d~kkpV~~LA~~P~~~vL~~a~-~dg~IR~w~i~t~~v~~ 192 (1605)
+-.++- ||...++++.+-+-. -+..=|.++|-+-|..+++.-| ..+..-+||..||+|.-
T Consensus 246 ~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 246 RGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred eCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 554443 333333333222111 1223477899995555555444 44556689999999983
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.72 Score=54.37 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=93.1
Q ss_pred CCceeEeCCCcc-eeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-EEE
Q 000378 23 QPHEAAFHPNQA-LIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVL 99 (1605)
Q Consensus 23 ~v~~~aF~P~ga-llA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~-~v~ 99 (1605)
..++-.|+|+.. ++-+ =.+++|.-||+.+|.......++....-+.... +| .| .+|+ .-++++|+++... -..
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~-~g-~L-v~~~-~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDA-GG-RL-IACE-HGVRLLDPDTGGKITLL 101 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecC-CC-eE-EEEc-cccEEEeccCCceeEEe
Confidence 445557889887 6666 778999999999988776655544444444444 44 33 3333 3467788865432 333
Q ss_pred eC-CCccccccccCceeEeccCCCcceEEecccc-----ccceeEEee---eecCCCCcccccc-cCCCceEeeeecCCC
Q 000378 100 HS-PEKKMESISVDTEVHLALTPLQPVVFFGFHR-----RMSVTVVGT---VEGGRAPTKIKTD-LKKPIVNLACHPRLP 169 (1605)
Q Consensus 100 ~s-p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~-----~~s~~~vgt---~eG~~~~~~ik~d-~kkpV~~LA~~P~~~ 169 (1605)
+. -+++.+.-..|..||-. =+. |||... ....+..|. +..+...+++..+ +-.| .+||||||+.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pd---G~~--wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~-NGla~SpDg~ 175 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPD---GRI--WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP-NGLAFSPDGK 175 (307)
T ss_pred ccccCCCCcCCCCceeEcCC---CCE--EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec-CceEECCCCC
Confidence 33 33444433455544221 123 998877 444444443 3333334455555 4433 6899999999
Q ss_pred eEEEEecC-ceEEEEeccc
Q 000378 170 VLYVAYAD-GLIRAYNIHT 187 (1605)
Q Consensus 170 vL~~a~~d-g~IR~w~i~t 187 (1605)
+||++... +.|..|+...
T Consensus 176 tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 176 TLYVADTPANRIHRYDLDP 194 (307)
T ss_pred EEEEEeCCCCeEEEEecCc
Confidence 99999865 7777776653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.7 Score=52.80 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=61.1
Q ss_pred eeeecCCCeEEEEecC---------------------------------ceEEEEecccceEEEEEeeccccccccce-e
Q 000378 162 LACHPRLPVLYVAYAD---------------------------------GLIRAYNIHTYAVHYTLQLDNTIKLLGAG-A 207 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~d---------------------------------g~IR~w~i~t~~v~~tL~~~~~~~~~g~~-a 207 (1605)
.|+.|+..+||+...+ |.+.|||+.||++....+.+ .-..+ .
T Consensus 392 ~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~----~p~~~~~ 467 (527)
T TIGR03075 392 MAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED----FPLWGGV 467 (527)
T ss_pred ceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC----CCCCCcc
Confidence 7888988888887665 46899999999999988763 21122 2
Q ss_pred EeecCCceEEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCCCcc
Q 000378 208 FAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNRPPM 261 (1605)
Q Consensus 208 ~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~~~~ 261 (1605)
++- .|..+|+|+.||.+.++|..+-. ++|+.|+--+-.-+||
T Consensus 468 l~t--~g~lvf~g~~~G~l~a~D~~TGe----------~lw~~~~g~~~~a~P~ 509 (527)
T TIGR03075 468 LAT--AGDLVFYGTLEGYFKAFDAKTGE----------ELWKFKTGSGIVGPPV 509 (527)
T ss_pred eEE--CCcEEEEECCCCeEEEEECCCCC----------EeEEEeCCCCceecCE
Confidence 333 44578899999999999998744 4799998444444444
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.057 Score=69.22 Aligned_cols=211 Identities=19% Similarity=0.162 Sum_probs=136.9
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEec-CC-cEEeeccCCCceEE
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILE-DC-TIRSCDFDTEQSFV 98 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~-D~-tI~~wd~~~~q~~v 98 (1605)
.--|+|||-+-..||+ ++.+.|++|++.+|....+ -.|.++|..+-=|- ||.++..-+. .. -.-
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa----------- 1170 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA----------- 1170 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH-----------
Confidence 5679999999999999 9999999999999999888 78888888887777 5544322111 11 122
Q ss_pred EeCCCccccccccCceeEeccCCCcceEEeccccccc-eeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecC
Q 000378 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMS-VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1605)
Q Consensus 99 ~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s-~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~d 177 (1605)
| |. .++ +..+-++.+-+. +-|+-..+.=+.|-.-
T Consensus 1171 -------------------------L--W~----~~s~~~~~Hsf~ed~~--------------vkFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1171 -------------------------L--WD----ASSTGGPRHSFDEDKA--------------VKFSNSLQFRALGTEA 1205 (1516)
T ss_pred -------------------------H--hc----cccccCccccccccce--------------eehhhhHHHHHhcccc
Confidence 3 44 221 112222322222 3454334444455544
Q ss_pred ceEEEEecccceEEEEEeeccccccccc-eeEeecCCceEEEEecCCCeEEeeecCCC-------CCeeeeeccceeEEE
Q 000378 178 GLIRAYNIHTYAVHYTLQLDNTIKLLGA-GAFAFHPTLEWLFVGDRRGTLLAWDVSIE-------RPSMIGMDGSLQVWK 249 (1605)
Q Consensus 178 g~IR~w~i~t~~v~~tL~~~~~~~~~g~-~a~Af~P~g~~l~~G~~dgtl~~W~vs~~-------~~~m~g~~g~~~~w~ 249 (1605)
..+-+||+||+.++-|+.- +++-+.+- ...-|+|+-..|+- || .+|||-.. +=+|-| .|+.+=-.
T Consensus 1206 d~a~~YDvqT~~~l~tylt-~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g 1278 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLT-DTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSG 1278 (1516)
T ss_pred cceEEEecccCcHHHHhcC-cchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCC
Confidence 5667899999999866322 23333333 35669999998883 23 58999743 334333 45555556
Q ss_pred EEEeeCCCCCcccccccccCCccccccceeeccCCCcceecCCcccccc
Q 000378 250 TRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALE 298 (1605)
Q Consensus 250 ~rv~~~~~~~~~~a~~~~~a~~es~d~~~il~~~~g~~vyp~p~~~~~~ 298 (1605)
+-||+|..---||. |=-=-.|-+||-|.|--.--|.-+|-.=+|.|++
T Consensus 1279 ~eVIINSEIwD~RT-F~lLh~VP~Ldqc~VtFNstG~VmYa~~~~~d~~ 1326 (1516)
T KOG1832|consen 1279 NEVIINSEIWDMRT-FKLLHSVPSLDQCAVTFNSTGDVMYAMLNIEDVM 1326 (1516)
T ss_pred ceEEeechhhhhHH-HHHHhcCccccceEEEeccCccchhhhhhhhhhh
Confidence 67899988777775 2223458899999997777788888765555554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.6 Score=50.52 Aligned_cols=187 Identities=19% Similarity=0.151 Sum_probs=105.7
Q ss_pred CCceeEeCCCcceeee--e--cCceEEEEeccCCceeeeccCC-cceeeeeecCCCCceEEEEecCCcEEeeccCCCceE
Q 000378 23 QPHEAAFHPNQALIAV--A--IGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~--a--~g~~I~l~d~~tG~~~~~l~~~-~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~ 97 (1605)
.|+.++|+|+++.+-+ + .+.+|.++|..|++.+....-+ .| ..+|++|++..+.++=..+.+|..-|..+-...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 8999999999966655 4 3699999999999999994444 35 999999944346666668999999996653222
Q ss_pred EEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc-----eEeeeecCCCeEE
Q 000378 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI-----VNLACHPRLPVLY 172 (1605)
Q Consensus 98 v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV-----~~LA~~P~~~vL~ 172 (1605)
. .++.+.......-..+++...=-+..|-+..+....+..+.+..+-- +..-.|+ ..++.+|++...|
T Consensus 196 ~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v------~~~~~~~~~~~~~~v~~~p~g~~~y 268 (381)
T COG3391 196 R-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV------TATDLPVGSGAPRGVAVDPAGKAAY 268 (381)
T ss_pred c-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE------EEeccccccCCCCceeECCCCCEEE
Confidence 2 33322222122222222222212233333222111222221100000 0011133 3479999999999
Q ss_pred EEecC-ceEEEEecccceEEEEEeeccccccccceeEeecCCceEEE
Q 000378 173 VAYAD-GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF 218 (1605)
Q Consensus 173 ~a~~d-g~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~ 218 (1605)
++... +.+..=|-.+..+.-+.-.-+. -......++++|...-.-
T Consensus 269 v~~~~~~~V~vid~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 314 (381)
T COG3391 269 VANSQGGTVSVIDGATDRVVKTGPTGNE-ALGEPVSIAISPLYDTNY 314 (381)
T ss_pred EEecCCCeEEEEeCCCCceeeeeccccc-ccccceeccceeeccccc
Confidence 99544 7777777777777643332111 112245666666655444
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.79 E-value=2.8 Score=46.77 Aligned_cols=141 Identities=17% Similarity=0.202 Sum_probs=92.8
Q ss_pred CCcceeeeecCceEEEEeccCC-----ceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEeCCCcc
Q 000378 31 PNQALIAVAIGTYIIEFDTLTG-----SRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKK 105 (1605)
Q Consensus 31 P~gallA~a~g~~I~l~d~~tG-----~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~ 105 (1605)
..+..|+++..+.|.+|....+ +....+.....+..|+|.+ +.|+.|..+ ...+.|+.+.++.-++.++..
T Consensus 103 ~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~ 178 (275)
T PF00780_consen 103 EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDS 178 (275)
T ss_pred ccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCC
Confidence 6677888899999998887653 3444588899999999995 677777644 488999998877666665554
Q ss_pred ccc---------------cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCccccccc--CCCceEeeeecCC
Q 000378 106 MES---------------ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL--KKPIVNLACHPRL 168 (1605)
Q Consensus 106 ~~~---------------~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~--kkpV~~LA~~P~~ 168 (1605)
... +++ +++ |++++ .-+-.| +.+|. +++ +..+ .....+++| +.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~e~--------Ll~~~-----~~g~fv-~~~G~--~~r-~~~i~W~~~p~~~~~--~~ 238 (275)
T PF00780_consen 179 SSSFKSRNSSSKPLGIFQLSD-NEF--------LLCYD-----NIGVFV-NKNGE--PSR-KSTIQWSSAPQSVAY--SS 238 (275)
T ss_pred cchhhhcccCCCceEEEEeCC-ceE--------EEEec-----ceEEEE-cCCCC--cCc-ccEEEcCCchhEEEE--EC
Confidence 310 111 233 22222 112222 34443 333 3333 235668888 56
Q ss_pred CeEEEEecCceEEEEecccceEEEEEee
Q 000378 169 PVLYVAYADGLIRAYNIHTYAVHYTLQL 196 (1605)
Q Consensus 169 ~vL~~a~~dg~IR~w~i~t~~v~~tL~~ 196 (1605)
|.|++-+. +.|.+|++.||+..-++.+
T Consensus 239 pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 239 PYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 79998885 5699999999988766665
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.14 Score=62.73 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=107.5
Q ss_pred cCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce----------------EEEeCCCccccc-cccCceeEeccCC
Q 000378 59 DINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----------------FVLHSPEKKMES-ISVDTEVHLALTP 121 (1605)
Q Consensus 59 ~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----------------~v~~sp~~~~~~-~s~d~~ih~a~t~ 121 (1605)
.|..-|..+-|.- .|.+|++|+.|-.|-+||-..++. .+=|+-| +++. -|.|+.|
T Consensus 140 ~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv------ 211 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV------ 211 (559)
T ss_pred CCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce------
Confidence 4666788888887 899999999999999999988655 3334433 4444 4777877
Q ss_pred CcceEEeccccccceeEEee--eecCCCCcccccccCCCceEeeeecCCC-eEEEEecCceEEEEecccceEEEEEe---
Q 000378 122 LQPVVFFGFHRRMSVTVVGT--VEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ--- 195 (1605)
Q Consensus 122 ~~l~vw~~~~~~~s~~~vgt--~eG~~~~~~ik~d~kkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~--- 195 (1605)
|.-.- ..++.+-+| +.-|.. ||--||.-|+.| .|+++++|+.+.=.|+.+..+.=++.
T Consensus 212 -r~s~i-----~~t~~~e~t~rl~~h~g----------~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 212 -RVSEI-----LETGYVENTKRLAPHEG----------PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred -eeeee-----ccccceecceecccccC----------ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence 32000 224444433 555666 999999999887 58899999999999998887653332
Q ss_pred eccccccccceeEeecCCceEEE-EecCCCeEEeeecC
Q 000378 196 LDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 196 ~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
-|..- .++..++|-+|-.-..| ||+.|--.+++|..
T Consensus 276 ~~~~~-~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 276 ADEKE-RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQR 312 (559)
T ss_pred cCCcc-ceeeeeEecCCCCccccccCChhhhhhhhccc
Confidence 22111 45888999999888666 99999988888764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.45 Score=58.85 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=118.8
Q ss_pred CCCCceeEeCCCcceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEe
Q 000378 21 PLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~ 100 (1605)
-..+..++|||.|.+|++.--+-|++|+.-.+.++..+.|. -|.-+-||| .|..|+.=+.-..|
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~-------------- 95 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSP-NEKYLVTWSREPII-------------- 95 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCc-ccceeeeeccCCcc--------------
Confidence 34788999999999999988899999999988877776664 588899999 77777654333332
Q ss_pred CCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCce-EeeeecCCCeEEEEecCce
Q 000378 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV-NLACHPRLPVLYVAYADGL 179 (1605)
Q Consensus 101 sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~-~LA~~P~~~vL~~a~~dg~ 179 (1605)
.|+-+..-.-++. ++.||+ -.++..|-++++-.-+ -+ .+ .|-|+=|...+|=-. ...
T Consensus 96 ~pe~e~sp~~~~n---------~~~vwd----~~sg~iv~sf~~~~q~-----~~---~Wp~~k~s~~D~y~ARvv-~~s 153 (561)
T COG5354 96 EPEIEISPFTSKN---------NVFVWD----IASGMIVFSFNGISQP-----YL---GWPVLKFSIDDKYVARVV-GSS 153 (561)
T ss_pred ChhhccCCccccC---------ceeEEe----ccCceeEeeccccCCc-----cc---ccceeeeeecchhhhhhc-cCe
Confidence 4444433322222 457899 7788888778777661 11 55 667774443332222 334
Q ss_pred EEEEec-ccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEeeCCCC
Q 000378 180 IRAYNI-HTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVIINPNR 258 (1605)
Q Consensus 180 IR~w~i-~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~~~~~~ 258 (1605)
+.+|++ .|...+.. -.++..|+.-|+++|.| ...+|..| +|-.-|=.+++.+|+.= -|+
T Consensus 154 l~i~e~t~n~~~~p~----~~lr~~gi~dFsisP~~-------n~~~la~~-----tPEk~~kpa~~~i~sIp----~~s 213 (561)
T COG5354 154 LYIHEITDNIEEHPF----KNLRPVGILDFSISPEG-------NHDELAYW-----TPEKLNKPAMVRILSIP----KNS 213 (561)
T ss_pred EEEEecCCccccCch----hhccccceeeEEecCCC-------CCceEEEE-----ccccCCCCcEEEEEEcc----CCC
Confidence 557875 23333321 13467899999999986 22234444 22223333444444422 355
Q ss_pred CcccccccccCC
Q 000378 259 PPMQANFFEPAS 270 (1605)
Q Consensus 259 ~~~~a~~~~~a~ 270 (1605)
+-..-|||+--+
T Consensus 214 ~l~tk~lfk~~~ 225 (561)
T COG5354 214 VLVTKNLFKVSG 225 (561)
T ss_pred eeeeeeeEeecc
Confidence 556678887443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.065 Score=60.69 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=94.9
Q ss_pred eeeeecCceEEEEeccCCceeeeccCCcceeeeeec-CCCCceEEEEecCCcEEeeccCCC-ce----EEEeC------C
Q 000378 35 LIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYS-PTSGHAVVAILEDCTIRSCDFDTE-QS----FVLHS------P 102 (1605)
Q Consensus 35 llA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~S-P~~g~~laa~~~D~tI~~wd~~~~-q~----~v~~s------p 102 (1605)
++|.+.+.++..++.. -.+++ .+--..+--+ |+ ++.+..|+.|..|++|+.|+..-+ +. +-.++ |
T Consensus 33 l~~~sa~~~v~~~~~~-k~k~s-~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVR-KHKES-CRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhh-hhhhh-hhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 5677888899999865 12222 2222233333 55 667789999999999999999853 22 22222 6
Q ss_pred Cccc--cc--cccCceeEeccCCCcceEEeccccccceeEEeeeecCC-CCcccccccCCCceEeeeecCCCeEEEE--e
Q 000378 103 EKKM--ES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR-APTKIKTDLKKPIVNLACHPRLPVLYVA--Y 175 (1605)
Q Consensus 103 ~~~~--~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~-~~~~ik~d~kkpV~~LA~~P~~~vL~~a--~ 175 (1605)
.++- +. .+.|+.| |. |+ .+-.+++|-+-+|. . |+..++-+-.+.+|+.+ |
T Consensus 110 ~~~~~~~~c~~~~dg~i-------r~--~n----~~p~k~~g~~g~h~~~----------~~e~~ivv~sd~~i~~a~~S 166 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRI-------RA--CN----IKPNKVLGYVGQHNFE----------SGEELIVVGSDEFLKIADTS 166 (238)
T ss_pred cccccceeEEeccCCce-------ee--ec----cccCceeeeeccccCC----------CcceeEEecCCceEEeeccc
Confidence 6665 44 4677888 88 99 77778888888888 6 99999999999999999 9
Q ss_pred cCceEEEEecccce
Q 000378 176 ADGLIRAYNIHTYA 189 (1605)
Q Consensus 176 ~dg~IR~w~i~t~~ 189 (1605)
-|.++|.||+.-..
T Consensus 167 ~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 167 HDRVLKKWNVEKIK 180 (238)
T ss_pred cchhhhhcchhhhh
Confidence 99999999987543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.9 Score=50.56 Aligned_cols=206 Identities=12% Similarity=0.045 Sum_probs=111.2
Q ss_pred CcceeeeecCceEEEEeccCCceeeeccCCccee----ee-ee--cCCCCceEEEEecCCcEEeeccCCCceEEEeCCCc
Q 000378 32 NQALIAVAIGTYIIEFDTLTGSRIASIDINSPVV----RM-AY--SPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEK 104 (1605)
Q Consensus 32 ~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~----~l-A~--SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~ 104 (1605)
++++.+.+.+.++.=+|+.||+++=......+.. .+ +- +-.+++.|.++..|+.|+..|..|.+..=-|..++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 7777777778899999999999886643332210 00 00 01122688889999999999999976644444333
Q ss_pred cc------cc--cccCceeEeccC---------CCcceEEeccccccceeEEeeeecC-CCCc---------ccccccCC
Q 000378 105 KM------ES--ISVDTEVHLALT---------PLQPVVFFGFHRRMSVTVVGTVEGG-RAPT---------KIKTDLKK 157 (1605)
Q Consensus 105 ~~------~~--~s~d~~ih~a~t---------~~~l~vw~~~~~~~s~~~vgt~eG~-~~~~---------~ik~d~kk 157 (1605)
.. .. +-.++.+=+.-. .-.++.++ ..+++.+=..+-. ..+- .+...-.-
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD----~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYD----VETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEE----CCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 21 00 011111100000 00011111 2233322222111 0000 00000011
Q ss_pred Cce-EeeeecCCCeEEEEecCc------------------eEEEEecccceEEEEEeecccccc----ccceeEeecC--
Q 000378 158 PIV-NLACHPRLPVLYVAYADG------------------LIRAYNIHTYAVHYTLQLDNTIKL----LGAGAFAFHP-- 212 (1605)
Q Consensus 158 pV~-~LA~~P~~~vL~~a~~dg------------------~IR~w~i~t~~v~~tL~~~~~~~~----~g~~a~Af~P-- 212 (1605)
.|+ +.+..+.+..+|+++.|+ .|-+.|+.||++....+.. -|. .+..+-.+.+
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~--~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT--PHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC--CCCCcccccCCCCeEEecc
Confidence 222 356667788899998775 6889999999999987752 121 2222222221
Q ss_pred --Cce---EEEEecCCCeEEeeecCCCCCeeeeeccceeEEEEEEe
Q 000378 213 --TLE---WLFVGDRRGTLLAWDVSIERPSMIGMDGSLQVWKTRVI 253 (1605)
Q Consensus 213 --~g~---~l~~G~~dgtl~~W~vs~~~~~m~g~~g~~~~w~~rv~ 253 (1605)
+|. .+++|+.+|++.+-|..+- -.+|+.++-
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG----------~~~W~~~~~ 330 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTG----------KLISARPEV 330 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCC----------cEeeEeEee
Confidence 232 6789999999988777643 357988775
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.21 Score=61.63 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=101.0
Q ss_pred ccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccC---Cce-----eeeccCCcceeeeeecCCCCceE
Q 000378 8 HLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLT---GSR-----IASIDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 8 ~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~t---G~~-----~~~l~~~~~v~~lA~SP~~g~~l 77 (1605)
|..|+.. ||.. .|++++=--+-.-+++ |-|++||+|.... |.+ -.-..|..+|+.+-|=. |...+
T Consensus 725 ~irL~nf~GH~~----~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i 799 (1034)
T KOG4190|consen 725 HIRLCNFTGHQE----KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSI 799 (1034)
T ss_pred eeeeecccCcHH----HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-cccee
Confidence 4666666 8888 7888765555555555 9999999998753 223 23378999999999987 44443
Q ss_pred EEEecCCcEEeeccCCCce-E-EEeCC--------------Cc-ccccc-ccCceeEeccCCCcceEEeccccccceeEE
Q 000378 78 VAILEDCTIRSCDFDTEQS-F-VLHSP--------------EK-KMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVV 139 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q~-~-v~~sp--------------~~-~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~v 139 (1605)
.+-|+-||+||.--.+. + +...| |. -.+++ |...|| ++ |. .-+..-+
T Consensus 800 --~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTV-------Kl--~D----aRsce~~ 864 (1034)
T KOG4190|consen 800 --ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTV-------KL--FD----ARSCEWT 864 (1034)
T ss_pred --eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhh-------ee--ee----cccccce
Confidence 46799999999754332 0 11111 11 12223 444555 44 33 1111111
Q ss_pred e--eeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEE
Q 000378 140 G--TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 140 g--t~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~ 191 (1605)
- .|-....| .--++++|--|.|-+|++|-..|.|-.-|..||.|+
T Consensus 865 ~E~kVcna~~P-------na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 865 CELKVCNAPGP-------NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eeEEeccCCCC-------chheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 0 12222220 014899999999999999999999999999999998
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.86 Score=56.20 Aligned_cols=136 Identities=16% Similarity=0.281 Sum_probs=66.3
Q ss_pred CceEEEEecCCcEEeeccCCCce----------EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeee
Q 000378 74 GHAVVAILEDCTIRSCDFDTEQS----------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 74 g~~laa~~~D~tI~~wd~~~~q~----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
|+.|...+.| .|.+||..+.+. .|.+|++|+++++-.+.++ .++. +....+.. ..=+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i---------~il~--~~~~~~~~-~~~~ 183 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSI---------YILK--YNLEAVAA-IPEE 183 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SE---------EEEE--E-HHHHHH-BTTT
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeE---------EEEE--ecchhccc-cccc
Confidence 6666665554 777888777532 6777777777775333344 1122 00110000 0112
Q ss_pred cCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCC
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~d 223 (1605)
|..+....-.+..-.|.+-++.-| =++|+-.. -|+ | +-+|..-..=.+|..+.+. .+.|.-..|+.-|||
T Consensus 184 g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lk-Y-l~~Ge~~~i~~ld~~~yll-----gy~~~~~~ly~~Dr~ 253 (443)
T PF04053_consen 184 GVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLK-Y-LVNGETGIIAHLDKPLYLL-----GYLPKENRLYLIDRD 253 (443)
T ss_dssp B-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEE-E-EETTEEEEEEE-SS--EEE-----EEETTTTEEEEE-TT
T ss_pred CchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEE-E-EEcCCcceEEEcCCceEEE-----EEEccCCEEEEEECC
Confidence 333333344444457888888877 67777664 342 2 5555555333346655554 456777889999999
Q ss_pred CeEEeeecC
Q 000378 224 GTLLAWDVS 232 (1605)
Q Consensus 224 gtl~~W~vs 232 (1605)
+.+..+.++
T Consensus 254 ~~v~~~~ld 262 (443)
T PF04053_consen 254 GNVISYELD 262 (443)
T ss_dssp --EEEEE--
T ss_pred CCEEEEEEC
Confidence 999988776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.89 E-value=2.1 Score=50.60 Aligned_cols=204 Identities=19% Similarity=0.172 Sum_probs=124.2
Q ss_pred CCCCCceeEeCCCcceeee---ecCceEEEEeccCCceeeeccCC---cceeeeeecCCCCceEEEEecC-----CcEEe
Q 000378 20 KPLQPHEAAFHPNQALIAV---AIGTYIIEFDTLTGSRIASIDIN---SPVVRMAYSPTSGHAVVAILED-----CTIRS 88 (1605)
Q Consensus 20 ~~~~v~~~aF~P~gallA~---a~g~~I~l~d~~tG~~~~~l~~~---~~v~~lA~SP~~g~~laa~~~D-----~tI~~ 88 (1605)
-|.+-|.++|||.-.+-.+ ==|+.-.+||..++..+.++--. -+--.=.||| ||..|-|.=.| |.|=+
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEE
Confidence 4677889999998775433 56899999999888877662100 0111226999 99888887665 67888
Q ss_pred eccCCC-ce------------EEEeCCCcccccc-ccCceeEecc--CC-----Ccc--eEEeccccccceeEEeeeecC
Q 000378 89 CDFDTE-QS------------FVLHSPEKKMESI-SVDTEVHLAL--TP-----LQP--VVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 89 wd~~~~-q~------------~v~~sp~~~~~~~-s~d~~ih~a~--t~-----~~l--~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
+|+..+ |. -|...+|||++.+ ..+-++|-++ |+ .+| ++-. +.++.. +|-|
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld----~atG~l---iekh 217 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD----AATGNL---IEKH 217 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe----ccccch---hhhc
Confidence 998753 33 5777799999996 4446777332 22 222 1122 223322 3444
Q ss_pred CCCcccccccCCCceEeeeecCCCeEEEEecCceE----EEEec-ccceEEEEEee--ccccc-cccceeEeecCCceEE
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI----RAYNI-HTYAVHYTLQL--DNTIK-LLGAGAFAFHPTLEWL 217 (1605)
Q Consensus 146 ~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~I----R~w~i-~t~~v~~tL~~--~~~~~-~~g~~a~Af~P~g~~l 217 (1605)
.=|-. +..-.|+-|+.-+|+.|++-.--.|-- -+--+ .-|.++-.|+. +.+.. ..+++|+|-+-+.+|+
T Consensus 218 ~Lp~~---l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 218 TLPAS---LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred cCchh---hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 43211 122479999999999988765433321 01111 11122211211 12221 2389999999999999
Q ss_pred EEec-CCCeEEeeecCCC
Q 000378 218 FVGD-RRGTLLAWDVSIE 234 (1605)
Q Consensus 218 ~~G~-~dgtl~~W~vs~~ 234 (1605)
..-| +.+..-+||..+-
T Consensus 295 ~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 295 ALTSPRGNRAVIWDAATG 312 (366)
T ss_pred EEecCCCCeEEEEEcCCC
Confidence 9555 8889999998753
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.6 Score=54.76 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=52.7
Q ss_pred CCcccccccCCCceEeeeecCCCeEEEE---ecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCC
Q 000378 147 APTKIKTDLKKPIVNLACHPRLPVLYVA---YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1605)
Q Consensus 147 ~~~~ik~d~kkpV~~LA~~P~~~vL~~a---~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~d 223 (1605)
.+.-||+==||--..|-++|.|+++++| |.-|.+.+||......+ .=+.+---++.-+-+-|+|+.+++++..
T Consensus 483 ~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k----~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 483 KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK----DTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh----hccCccccccccceECCCCCEEEEeeeh
Confidence 3455677677888999999999999987 45678888888752222 1112223466678889999999998854
Q ss_pred C
Q 000378 224 G 224 (1605)
Q Consensus 224 g 224 (1605)
+
T Consensus 559 w 559 (698)
T KOG2314|consen 559 W 559 (698)
T ss_pred h
Confidence 3
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.91 Score=53.41 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCce
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSR 54 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~ 54 (1605)
.|.+++|.|||++|++--...|.+++ ..|..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSL 33 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcC
Confidence 57899999999999996688999999 66665
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.3 Score=55.05 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=100.6
Q ss_pred eeEeCCCcceeeeecCceE------------EEEeccCCceeee-ccCCcceeeeeecCCCC-ceEEEEecCCcEEeecc
Q 000378 26 EAAFHPNQALIAVAIGTYI------------IEFDTLTGSRIAS-IDINSPVVRMAYSPTSG-HAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 26 ~~aF~P~gallA~a~g~~I------------~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g-~~laa~~~D~tI~~wd~ 91 (1605)
.+-|++.|..|-+=..++. -|++ .|++-+++ ++.-+||+..+|+|.+. =.+++|-.+.++-..|+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~-~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR-ITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEe-ecccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence 4678999998887444443 5677 56888888 59999999999999655 45666778999999998
Q ss_pred CCC---------ceEEEeCCCcccccc-ccC---ceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCC
Q 000378 92 DTE---------QSFVLHSPEKKMESI-SVD---TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 92 ~~~---------q~~v~~sp~~~~~~~-s~d---~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkp 158 (1605)
... +.-..|||-++++-+ .=| +.| .+|. ...-.+++|++.|-..
T Consensus 306 r~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni---------~i~~---~~~rf~~~~~~~~~n~----------- 362 (561)
T COG5354 306 RGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNI---------EIFD---PAGRFKVAGAFNGLNT----------- 362 (561)
T ss_pred ccceEEecCCcccccccccCcccEEEEecCCccccce---------EEec---cCCceEEEEEeecCCc-----------
Confidence 763 227788888887753 333 222 2355 3334566767888666
Q ss_pred ceEeeeecCCCeEEEEe------cCceEEEEecccceEE
Q 000378 159 IVNLACHPRLPVLYVAY------ADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~------~dg~IR~w~i~t~~v~ 191 (1605)
.=.-++||++++.+++ .|..|++|||....+-
T Consensus 363 -s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 363 -SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred -eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 2235889999999987 4888999998655443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.17 Score=44.82 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=46.7
Q ss_pred HHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhH
Q 000378 853 AIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADY 915 (1605)
Q Consensus 853 Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~~f 915 (1605)
+++.|+|+.|++.++.-..+..+.+ +.+.. |+..+++.|+++.|+++++++...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~------~~~~~---la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP------EARLL---LAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH------HHHHH---HHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH------HHHHH---HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4688999999999999888888877 77777 999999999999999999987654
|
... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.26 Score=64.89 Aligned_cols=78 Identities=15% Similarity=0.345 Sum_probs=62.8
Q ss_pred CCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEee---cCCceEEEEecCCCeEEeeecCC
Q 000378 157 KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF---HPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af---~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
-||+++||+-||..|..|+.+|.|..||+|++.+.=-+.. |-....++=| .-++-.+-++|+.|. .|+++.
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e----~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE----HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee----cCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 5999999999999999999999999999999988855555 5554444444 334446679999998 999999
Q ss_pred CCCeeeee
Q 000378 234 ERPSMIGM 241 (1605)
Q Consensus 234 ~~~~m~g~ 241 (1605)
+++ ..++
T Consensus 205 nk~-~L~~ 211 (1206)
T KOG2079|consen 205 NKA-LLNM 211 (1206)
T ss_pred chh-hhcc
Confidence 988 6666
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.12 Score=65.40 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=100.5
Q ss_pred eEeC-CCcceeeeecCceEEEEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCce-------
Q 000378 27 AAFH-PNQALIAVAIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------- 96 (1605)
Q Consensus 27 ~aF~-P~gallA~a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------- 96 (1605)
|.|+ -|+..||++-|+.|.+||..-|+--.. .++.+.|..++|.-.--..+-+-+.|+||+.||-+.-.+
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 4443 478899999999999999999885444 789999999999854445677889999999999876211
Q ss_pred ------EEEeCC--Cccccccc-cCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecC
Q 000378 97 ------FVLHSP--EKKMESIS-VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR 167 (1605)
Q Consensus 97 ------~v~~sp--~~~~~~~s-~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~ 167 (1605)
.--|-| +|..+--+ .|.-||+-.-.=-.-.|+-|-+ .++|-++.||.+ -|-..-+.-|
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~---~~pVh~F~GH~D----------~V~eFlWR~r 310 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL---NTPVHTFVGHDD----------VVLEFLWRKR 310 (1081)
T ss_pred ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC---CcceeeecCcch----------HHHHHhhhhc
Confidence 222334 44444422 3356666665522223883333 356778999999 4433333333
Q ss_pred CC----------eEEEEecCceEEEEeccc
Q 000378 168 LP----------VLYVAYADGLIRAYNIHT 187 (1605)
Q Consensus 168 ~~----------vL~~a~~dg~IR~w~i~t 187 (1605)
+. -|++=|-|.++|+|-|.+
T Consensus 311 ~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 311 KECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCCCccceeEEEeecCCceEeeeccH
Confidence 33 688999999999998765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.19 E-value=3.5 Score=53.98 Aligned_cols=187 Identities=13% Similarity=0.185 Sum_probs=109.2
Q ss_pred eeEeCCCcceeee-ecCceEEEEeccCCcee-ee-ccCCcceeeeeecCCCCceEEEEecCCc-----EEeeccCCC---
Q 000378 26 EAAFHPNQALIAV-AIGTYIIEFDTLTGSRI-AS-IDINSPVVRMAYSPTSGHAVVAILEDCT-----IRSCDFDTE--- 94 (1605)
Q Consensus 26 ~~aF~P~gallA~-a~g~~I~l~d~~tG~~~-~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t-----I~~wd~~~~--- 94 (1605)
.=+|++++..+|. +.+..|...+- +=++ .. ..+.-.++..-|.-.+-..|++..+|.. |+.||++--
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4579999999998 55556666552 2222 22 3444444555566534478999999886 899999762
Q ss_pred c-e-E----EEeC-CCc--c----ccccccC-ceeEeccCCCcceEEeccccccceeEEeeeec-----CCCCccccccc
Q 000378 95 Q-S-F----VLHS-PEK--K----MESISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG-----GRAPTKIKTDL 155 (1605)
Q Consensus 95 q-~-~----v~~s-p~~--~----~~~~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG-----~~~~~~ik~d~ 155 (1605)
. + | +.|- +.. . .+++|.| .+|-++++- +.++ -++| -..-.++--+.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~n--------------G~V~-~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTN--------------GLVI-CYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecC--------------cEEE-EEcCcchhccccceeeeccC
Confidence 1 2 2 2333 222 1 2334444 444333332 1111 1111 01122334456
Q ss_pred CCCceEeeeecCCCe-EEEEecCceEEEEecccceE-EEEEeeccccccccceeEeecCCce-EEEEecCCCeEEeeecC
Q 000378 156 KKPIVNLACHPRLPV-LYVAYADGLIRAYNIHTYAV-HYTLQLDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 156 kkpV~~LA~~P~~~v-L~~a~~dg~IR~w~i~t~~v-~~tL~~~~~~~~~g~~a~Af~P~g~-~l~~G~~dgtl~~W~vs 232 (1605)
|-||++||+.-|+.. |+++- -..|.+|.+++-.+ +.++-- |-.++.|-+|++.-. .+++|+ --|.++|.+
T Consensus 171 ~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~----~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd 243 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDN----NGISLNCSSFSDGTYQFICAGS--EFLYFYDSD 243 (933)
T ss_pred CCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeecc----CCccceeeecCCCCccEEEecC--ceEEEEcCC
Confidence 779999999977666 88887 56677999995551 334444 778888999987666 444443 346677766
Q ss_pred CCCC
Q 000378 233 IERP 236 (1605)
Q Consensus 233 ~~~~ 236 (1605)
...|
T Consensus 244 ~~~~ 247 (933)
T KOG2114|consen 244 GRGP 247 (933)
T ss_pred Ccce
Confidence 4433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.2 Score=54.21 Aligned_cols=152 Identities=15% Similarity=0.210 Sum_probs=82.5
Q ss_pred ceeeeeecCCCCceEEEEecCCcEEeeccCCCceEE--EeCCCccccccccCceeEeccCCCcceEEecccccc-----c
Q 000378 63 PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV--LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRM-----S 135 (1605)
Q Consensus 63 ~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v--~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~-----s 135 (1605)
.|..|.|++..+ -|+++...|-|-+|-+...+.+= --.|+.. -.+..+++.-+|-++ -+--||.. .
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~----~~~~~~~~~~~~~~l--~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLD----YNFRRFSLNNSPGKL--TDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE----------------------S--GGGSS-SE--EE-GGG--TT-SEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccC----cccccccccCCCcce--EEehhhCCcccccc
Confidence 478999999555 78999999999998776543321 0001100 000111111111111 11111111 1
Q ss_pred eeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecc----ccccccceeEeec
Q 000378 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDN----TIKLLGAGAFAFH 211 (1605)
Q Consensus 136 ~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~----~~~~~g~~a~Af~ 211 (1605)
..++--++-.+. ||..|+.| |-.++|+||.||.+-+.|+-.-+++|+-.... ..+...+.++-|+
T Consensus 76 f~P~~l~~~~~g----------~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 76 FLPLTLLDAKQG----------PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp EEEEEEE---S-----------SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred cCchhheeccCC----------cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 222212444455 99999996 99999999999999999999999999866533 1223356677774
Q ss_pred -----CCc---eEEEEecCCCeEEeeecC
Q 000378 212 -----PTL---EWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 212 -----P~g---~~l~~G~~dgtl~~W~vs 232 (1605)
=|+ =.|+||...|++.+|.+-
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 122 356688877888887764
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.09 E-value=5.6 Score=49.25 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=38.6
Q ss_pred CCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCC
Q 000378 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1605)
Q Consensus 167 ~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg 224 (1605)
.+.+||+++.||.+.++|..||+++.+.++...+.+. -++|.-+| .++++..+|
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~---P~~~~~~g-~~yv~~~~g 458 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQAT---PMTYEVNG-KQYVGVMVG 458 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEc---CEEEEeCC-EEEEEEEec
Confidence 5679999999999999999999999998874444333 34444455 455554333
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.03 E-value=6.6 Score=44.81 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=88.8
Q ss_pred CCCceeEeCCCcceeee-e---cCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeecc-CCC--
Q 000378 22 LQPHEAAFHPNQALIAV-A---IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF-DTE-- 94 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~-a---~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~-~~~-- 94 (1605)
..+.++|.||||..+|+ . .++.+..+. .|.....+.-+....+-.|+| +|.+.++...+...+.+.. .+.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 47899999999999988 4 344555554 444444433555888889999 5888888888888888842 221
Q ss_pred ------------c-eEEEeCCCcccccc-cc---CceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCC
Q 000378 95 ------------Q-SFVLHSPEKKMESI-SV---DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK 157 (1605)
Q Consensus 95 ------------q-~~v~~sp~~~~~~~-s~---d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kk 157 (1605)
+ +.+..||||.-++. .. +++|+++. ..|...+... .=..|..+-..+-.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~----------V~r~~~g~~~----~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG----------VVRDGDGVPR----RLTGPRRVAPPLLS 166 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE----------EEeCCCCCcc----eeccceEecccccC
Confidence 1 27888899998883 32 35552221 1111111011 00122333334445
Q ss_pred CceEeeeecCCCeEEEEecCce
Q 000378 158 PIVNLACHPRLPVLYVAYADGL 179 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~ 179 (1605)
.|+.+++.+++.+++.+...+.
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred cceeeeecCCCEEEEEeCCCCC
Confidence 8999999999998888876554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.76 E-value=3.8 Score=51.00 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=30.6
Q ss_pred CCceeEeCCCcceeeeec-CceEEEEeccCCceeeeccCC
Q 000378 23 QPHEAAFHPNQALIAVAI-GTYIIEFDTLTGSRIASIDIN 61 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~-g~~I~l~d~~tG~~~~~l~~~ 61 (1605)
.|..++|.|||++|++-- ...|++++..++.....+++.
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~ 70 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLP 70 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCC
Confidence 689999999999999954 468999998777665554443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.26 Score=43.53 Aligned_cols=37 Identities=14% Similarity=0.375 Sum_probs=32.9
Q ss_pred cCCCceEeeeecCCCeEEEEecCceEEEEecccceEEE
Q 000378 155 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 192 (1605)
Q Consensus 155 ~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~ 192 (1605)
+..+|..++|+|...+||.|++||.|.+|.+ |++.+|
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence 4457999999999999999999999999999 887654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.61 E-value=3.7 Score=54.04 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=51.9
Q ss_pred CcceeeeecCceEEEEeccCCceeeeccCCccee---------eeeec--C-------------CCCceEEEEecCCcEE
Q 000378 32 NQALIAVAIGTYIIEFDTLTGSRIASIDINSPVV---------RMAYS--P-------------TSGHAVVAILEDCTIR 87 (1605)
Q Consensus 32 ~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~---------~lA~S--P-------------~~g~~laa~~~D~tI~ 87 (1605)
++.+...+-+..|+=+|+.||+++=..+...++. .++|- | ..+..|..+..|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 6777777777799999999999987754443321 23332 1 1234677777888888
Q ss_pred eeccCCCceEEEeCCCccc
Q 000378 88 SCDFDTEQSFVLHSPEKKM 106 (1605)
Q Consensus 88 ~wd~~~~q~~v~~sp~~~~ 106 (1605)
..|..|++.|--|.-+|+.
T Consensus 274 ALDA~TGk~~W~fg~~G~v 292 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTV 292 (764)
T ss_pred EEECCCCCEEEEecCCCce
Confidence 8888888888777666653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=91.25 E-value=3 Score=41.25 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=68.6
Q ss_pred hhhHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHH--------hHHHH
Q 000378 847 VLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIA--------DYESI 918 (1605)
Q Consensus 847 ~~R~~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~--------~fe~l 918 (1605)
..+....++.|+++.|.+.+..-...-.+ ....|.+ +|...++.|+++.|.++|+..- -|-.+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~---la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLG---LAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 44556677889999999888664333333 3488888 8999999999999999999873 23345
Q ss_pred HHHHHHcCCHHH-HHHHHHHHHHhcCCHHHHHHHHHhh
Q 000378 919 LDLFICHLNPSA-MRRLAQRLEEEGANPELRRYCERIL 955 (1605)
Q Consensus 919 l~L~i~~gn~~a-Lrrma~~aE~~~~D~elr~~~eRil 955 (1605)
-.+|...|+.++ +.-+.+.++....|++....+.|+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 566777788664 5555555555556666555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.45 Score=61.41 Aligned_cols=100 Identities=19% Similarity=0.321 Sum_probs=84.0
Q ss_pred ccccCCCc--eEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEee
Q 000378 152 KTDLKKPI--VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 152 k~d~kkpV--~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
.+|...|| ++|.+||---|||+|-.-|.|-.|+.++-+-| |.-+ -|-..+.-+-|||+|-.|.++|+=|.+.+|
T Consensus 53 qr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-tv~~---th~a~i~~l~wS~~G~~l~t~d~~g~v~lw 128 (1416)
T KOG3617|consen 53 QRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-TVVE---THPAPIQGLDWSHDGTVLMTLDNPGSVHLW 128 (1416)
T ss_pred CcccccceehhhhccChHHHHHhhccccceeEEEecCCceee-eecc---CCCCCceeEEecCCCCeEEEcCCCceeEEE
Confidence 35566776 58999999999999999999999999999988 5544 388899999999999999999999999999
Q ss_pred ecC----CCCCeeeeec--cceeEEEEEEeeC
Q 000378 230 DVS----IERPSMIGMD--GSLQVWKTRVIIN 255 (1605)
Q Consensus 230 ~vs----~~~~~m~g~~--g~~~~w~~rv~~~ 255 (1605)
... ..+.+|.-++ -.|..|-.|..+.
T Consensus 129 r~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~ 160 (1416)
T KOG3617|consen 129 RYDVIGEIQTSNIMQHELNDQLTLWCFRLSYD 160 (1416)
T ss_pred EeeeccccccchhhhhHhhceeeEEEEecCCC
Confidence 988 3445555553 5788899998655
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.12 E-value=7.6 Score=46.32 Aligned_cols=84 Identities=11% Similarity=-0.040 Sum_probs=51.3
Q ss_pred CCceeEeCCCcceeeeecCceEEEE-ecc-----CCceeee---ccC-----CcceeeeeecCCCCceEEEEecC-----
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEF-DTL-----TGSRIAS---IDI-----NSPVVRMAYSPTSGHAVVAILED----- 83 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~-d~~-----tG~~~~~---l~~-----~~~v~~lA~SP~~g~~laa~~~D----- 83 (1605)
.|++++|+++| +++++.+ .|..| |.. +|++... +.. ......|+|.| ||.+.++....
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CccceeEecCC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 57999999999 6666555 56655 542 2233222 222 23377899999 88776655521
Q ss_pred --------------CcEEeeccCCCce-----------EEEeCCCcccccc
Q 000378 84 --------------CTIRSCDFDTEQS-----------FVLHSPEKKMESI 109 (1605)
Q Consensus 84 --------------~tI~~wd~~~~q~-----------~v~~sp~~~~~~~ 109 (1605)
+.|.-+|.++... .++|+|+|+....
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 4566667665311 6777777776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.45 Score=59.99 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=56.2
Q ss_pred EEEeCCCcccccc-ccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCce-EeeeecCCCeEEEE
Q 000378 97 FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV-NLACHPRLPVLYVA 174 (1605)
Q Consensus 97 ~v~~sp~~~~~~~-s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~-~LA~~P~~~vL~~a 174 (1605)
.+.++|....+|. -.++++ ..||.+ -..+-|+-=|.. +|+ ||++.|||..||+|
T Consensus 25 ~~ewnP~~dLiA~~t~~gel-------------li~R~n-~qRlwtip~p~~----------~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGEL-------------LIHRLN-WQRLWTIPIPGE----------NVTASLCWRPDGKLLAVG 80 (665)
T ss_pred EEEEcCccchhheeccCCcE-------------EEEEec-cceeEeccCCCC----------ccceeeeecCCCCEEEEE
Confidence 7888999999994 566777 224455 445557764555 666 99999999999999
Q ss_pred ecCceEEEEecccceEE
Q 000378 175 YADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 175 ~~dg~IR~w~i~t~~v~ 191 (1605)
+.||+||+-|+.++..+
T Consensus 81 ~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ecCCeEEEEEccCCCce
Confidence 99999999999998766
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.9 Score=47.77 Aligned_cols=182 Identities=13% Similarity=0.036 Sum_probs=108.5
Q ss_pred CCceeEeCCCcceeee-e--cCceEEEEeccCCceeeeccCCc--ceeeeeecCCCCceEEEEecCCcEEeeccCCCce-
Q 000378 23 QPHEAAFHPNQALIAV-A--IGTYIIEFDTLTGSRIASIDINS--PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a--~g~~I~l~d~~tG~~~~~l~~~~--~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~- 96 (1605)
=-+++.|-++|.++-+ + ....|..+|..||+.+....+.+ +.--|+.- +.+...-.=.+++...||.+|.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 4578889888988888 2 23589999999999988744444 33444443 223434444578888899988533
Q ss_pred -EEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc---eEeeeecCCCeEE
Q 000378 97 -FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI---VNLACHPRLPVLY 172 (1605)
Q Consensus 97 -~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV---~~LA~~P~~~vL~ 172 (1605)
.+-|.-+|==+. +.+..+=+..---+++.++ ..+.+.++++.-..+ .+|| ..|-|. +|-+.|
T Consensus 124 ~~~~y~~EGWGLt-~dg~~Li~SDGS~~L~~~d----P~~f~~~~~i~V~~~--------g~pv~~LNELE~i-~G~IyA 189 (264)
T PF05096_consen 124 GTFPYPGEGWGLT-SDGKRLIMSDGSSRLYFLD----PETFKEVRTIQVTDN--------GRPVSNLNELEYI-NGKIYA 189 (264)
T ss_dssp EEEE-SSS--EEE-ECSSCEEEE-SSSEEEEE-----TTT-SEEEEEE-EET--------TEE---EEEEEEE-TTEEEE
T ss_pred EEEecCCcceEEE-cCCCEEEEECCccceEEEC----CcccceEEEEEEEEC--------CEECCCcEeEEEE-cCEEEE
Confidence 444443332221 1112222222223676666 677777776433222 3344 458887 788888
Q ss_pred EEecCceEEEEecccceEEEEEeeccccccc-----------cceeEeecCCceEEE-Ee
Q 000378 173 VAYADGLIRAYNIHTYAVHYTLQLDNTIKLL-----------GAGAFAFHPTLEWLF-VG 220 (1605)
Q Consensus 173 ~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~-----------g~~a~Af~P~g~~l~-~G 220 (1605)
=-.-...|-.=|-+||+|.-.+-+.+..+.. =..-+||.|..+.++ ||
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7776677777899999999877665544422 134799999888887 65
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.73 E-value=3.8 Score=48.92 Aligned_cols=173 Identities=12% Similarity=0.099 Sum_probs=124.6
Q ss_pred ccccc-ccccccc-cCCCCCCCCCceeEeCCCcceeee-ecCceEEEEeccCCc---eeee-ccCCcceeeeeecCCCCc
Q 000378 3 WATVQ-HLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGS---RIAS-IDINSPVVRMAYSPTSGH 75 (1605)
Q Consensus 3 W~~~~-~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~---~~~~-l~~~~~v~~lA~SP~~g~ 75 (1605)
|.=.| |....++ .|-. .|.++.|+|..-.|.+ +-|+.=-+|....|. ...+ ++|.--+..+-+|| ...
T Consensus 39 ~~~~~~w~~~htls~Hd~----~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~en 113 (361)
T KOG1523|consen 39 MLGADLWEPAHTLSEHDK----IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KEN 113 (361)
T ss_pred ecCCCCceeceehhhhCc----ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCc
Confidence 33344 4555566 5666 8999999999977777 999999999874443 3333 99999999999999 888
Q ss_pred eEEEEecCCcEEeeccCCCc----------------eEEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeE
Q 000378 76 AVVAILEDCTIRSCDFDTEQ----------------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTV 138 (1605)
Q Consensus 76 ~laa~~~D~tI~~wd~~~~q----------------~~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~ 138 (1605)
.+|+|+---.|-.|.+..|- +|+..+|.+-.++ +|.|+-. |- |-+|-|--+-++
T Consensus 114 kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~-------rV--fSayIK~Vdekp 184 (361)
T KOG1523|consen 114 KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC-------RV--FSAYIKGVDEKP 184 (361)
T ss_pred eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce-------eE--EEEeeeccccCC
Confidence 99999999999999998762 2999999999999 5888766 43 776665544443
Q ss_pred EeeeecCCCCccc-cccc---CCCceEeeeecCCCeEEEEecCceEEEEecccce
Q 000378 139 VGTVEGGRAPTKI-KTDL---KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1605)
Q Consensus 139 vgt~eG~~~~~~i-k~d~---kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~ 189 (1605)
..+--|-+-|--- =-+. --=|..+.|+|+|-.|+=.+-|.+|-+=|-+...
T Consensus 185 ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 185 APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 3222222211000 0000 1147889999999999988889999777766654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.50 E-value=2.9 Score=51.47 Aligned_cols=143 Identities=18% Similarity=0.186 Sum_probs=87.4
Q ss_pred cCCcceeeeeecCCCCceEEEE---ecC-CcEEeeccCCCce-----------EEEeCCCcccccc--ccCceeEeccCC
Q 000378 59 DINSPVVRMAYSPTSGHAVVAI---LED-CTIRSCDFDTEQS-----------FVLHSPEKKMESI--SVDTEVHLALTP 121 (1605)
Q Consensus 59 ~~~~~v~~lA~SP~~g~~laa~---~~D-~tI~~wd~~~~q~-----------~v~~sp~~~~~~~--s~d~~ih~a~t~ 121 (1605)
.-...+..=+||| +|+.++-. ... +.|+.+|+++.+. .-.|||||++++- ++|+..
T Consensus 190 ~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~------ 262 (425)
T COG0823 190 DSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSP------ 262 (425)
T ss_pred ccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCc------
Confidence 3344455567888 77665544 333 5799999999644 5678999999994 555666
Q ss_pred CcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCc---eEEEEecccceEEEEEeecc
Q 000378 122 LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG---LIRAYNIHTYAVHYTLQLDN 198 (1605)
Q Consensus 122 ~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg---~IR~w~i~t~~v~~tL~~~~ 198 (1605)
.++|.+..- .+... +-...|. =++=.++|||..+|=.|..+ .|=.+|....++. -++.
T Consensus 263 -~iy~~dl~~-~~~~~-Lt~~~gi-------------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~-- 323 (425)
T COG0823 263 -DIYLMDLDG-KNLPR-LTNGFGI-------------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTF-- 323 (425)
T ss_pred -cEEEEcCCC-Cccee-cccCCcc-------------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeec--
Confidence 566666211 22111 2112221 12335789999998877332 4667888888764 3332
Q ss_pred ccccccceeEeecCCceEEE-EecCCCeEEeeecC
Q 000378 199 TIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 199 ~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
+..+-..-..+|||.+|+ ++..+|- |++.
T Consensus 324 --~~~~~~~p~~SpdG~~i~~~~~~~g~---~~i~ 353 (425)
T COG0823 324 --SGGGNSNPVWSPDGDKIVFESSSGGQ---WDID 353 (425)
T ss_pred --cCCCCcCccCCCCCCEEEEEeccCCc---eeeE
Confidence 223333556699999999 6654555 5554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.3 Score=51.23 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 000378 1394 FKTGLAHLEQNQLPDALSCFDEAFL 1418 (1605)
Q Consensus 1394 LK~Gyk~~t~GKF~EAl~~Fr~IL~ 1418 (1605)
+..|.-+...|++.+|+..|++++.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3455556678888888888888775
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.7 Score=49.60 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=59.5
Q ss_pred EEEeCCCccccccccCceeEeccCCCcceEEeccccccce-eEEeeeecCCCCcccccccCCCceEeeeecC---CCeEE
Q 000378 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSV-TVVGTVEGGRAPTKIKTDLKKPIVNLACHPR---LPVLY 172 (1605)
Q Consensus 97 ~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~-~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~---~~vL~ 172 (1605)
.++|.|||+++-....++| |++. +..+. ..|..+ .++..+-.+-.-+||+||+ .+.||
T Consensus 6 ~~a~~pdG~l~v~e~~G~i---------~~~~---~~g~~~~~v~~~------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 6 SMAFLPDGRLLVAERSGRI---------WVVD---KDGSLKTPVADL------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp EEEEETTSCEEEEETTTEE---------EEEE---TTTEECEEEEE-------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred EEEEeCCCcEEEEeCCceE---------EEEe---CCCcCcceeccc------ccccccccCCcccceeccccCCCCEEE
Confidence 6788888888766556777 2233 11111 223222 1345556678899999995 68999
Q ss_pred EEecCc---------eEEEEecccc-------eEEEEEeeccccccccceeEeecCCceEEE-EecCCC
Q 000378 173 VAYADG---------LIRAYNIHTY-------AVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRG 224 (1605)
Q Consensus 173 ~a~~dg---------~IR~w~i~t~-------~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dg 224 (1605)
+.|... .|--|-.... +++.+...++.-..-..+.++|.|||...+ +|+...
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 999832 2333444333 233222222011222445699999997666 888766
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=90.13 E-value=9.1 Score=43.70 Aligned_cols=145 Identities=17% Similarity=0.092 Sum_probs=79.6
Q ss_pred ceeeeeecCCCCceEEEEe---cCCcEEeeccCCCceEEEeCCCccccc--cccCceeEeccCCCcceEEecccccccee
Q 000378 63 PVVRMAYSPTSGHAVVAIL---EDCTIRSCDFDTEQSFVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVT 137 (1605)
Q Consensus 63 ~v~~lA~SP~~g~~laa~~---~D~tI~~wd~~~~q~~v~~sp~~~~~~--~s~d~~ih~a~t~~~l~vw~~~~~~~s~~ 137 (1605)
.+.+.|.|| ||..+|+.. ...+++.+....+...++ ..+.+.+ .+.|+ |+|..-. .....
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g-----------~~W~v~~-~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDG-----------WVWTVDD-GSGGV 89 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCC-----------CEEEEEc-CCCce
Confidence 789999999 777777766 445566666555433333 1112222 23333 3355222 11111
Q ss_pred EEee--eecCCCCcccccccCC-CceEeeeecCCCeEEEEe---cCceEEEEecc---cceEEEEEeeccccc----ccc
Q 000378 138 VVGT--VEGGRAPTKIKTDLKK-PIVNLACHPRLPVLYVAY---ADGLIRAYNIH---TYAVHYTLQLDNTIK----LLG 204 (1605)
Q Consensus 138 ~vgt--~eG~~~~~~ik~d~kk-pV~~LA~~P~~~vL~~a~---~dg~IR~w~i~---t~~v~~tL~~~~~~~----~~g 204 (1605)
.+.. -.|...+..+...-.. +|.+|+.||||.-+|.-. .++.|.+--|. +|.+. .|.. +.-. ...
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~-~l~~-~~~~~~~~~~~ 167 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR-RLTG-PRRVAPPLLSD 167 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc-eecc-ceEecccccCc
Confidence 1111 1233333344333223 899999999999988877 35666666655 33111 2211 1111 236
Q ss_pred ceeEeecCCceEEEEecCCC
Q 000378 205 AGAFAFHPTLEWLFVGDRRG 224 (1605)
Q Consensus 205 ~~a~Af~P~g~~l~~G~~dg 224 (1605)
+.++++.+++..++.++..+
T Consensus 168 v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceeeeecCCCEEEEEeCCCC
Confidence 77899999999888666433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.1 Score=50.55 Aligned_cols=135 Identities=12% Similarity=0.068 Sum_probs=89.5
Q ss_pred eeEeCCCcceeeeecCc-eEEEEeccCCceee--e-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEeC
Q 000378 26 EAAFHPNQALIAVAIGT-YIIEFDTLTGSRIA--S-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1605)
Q Consensus 26 ~~aF~P~gallA~a~g~-~I~l~d~~tG~~~~--~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~s 101 (1605)
++-|++.|.-++|+..+ .|-.-+-..+.... . ..|...++-.+||-.+-++|-+|+.|+.+.-||+- .
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R--------~ 197 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR--------I 197 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec--------C
Confidence 45678888777774332 22211111112222 1 56777788888884444888899999999999871 1
Q ss_pred CCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeee-cCCCeEEEEecCceE
Q 000378 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH-PRLPVLYVAYADGLI 180 (1605)
Q Consensus 102 p~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~-P~~~vL~~a~~dg~I 180 (1605)
|. -|+|. .-.=|.. -|+|+-++ |+.+.+|+|+-|..|
T Consensus 198 p~--------------------~~i~~------------n~kvH~~----------GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 198 PK--------------------TFIWH------------NSKVHTS----------GVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred Cc--------------------ceeee------------cceeeec----------ceEEEecCCCCCceEEEeccccce
Confidence 11 23477 2333566 89999999 899999999999999
Q ss_pred EEEecc-cceEEEEEeeccccccccceeEeecCCce
Q 000378 181 RAYNIH-TYAVHYTLQLDNTIKLLGAGAFAFHPTLE 215 (1605)
Q Consensus 181 R~w~i~-t~~v~~tL~~~~~~~~~g~~a~Af~P~g~ 215 (1605)
|.||.- =|++++.-.. .+||--|--||.-+
T Consensus 236 ~~~DtRnm~kPl~~~~v-----~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 236 RVLDTRNMGKPLFKAKV-----GGGVWRIKHHPEIF 266 (339)
T ss_pred eeeehhcccCccccCcc-----ccceEEEEecchhh
Confidence 999998 4666642111 25787888888776
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.45 Score=54.27 Aligned_cols=132 Identities=17% Similarity=0.056 Sum_probs=72.7
Q ss_pred ceEEEEecCCcEEeeccCCCce---EEEeCCCc--------cccccccCceeEeccCCCcceEEeccccccceeEEeeee
Q 000378 75 HAVVAILEDCTIRSCDFDTEQS---FVLHSPEK--------KMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1605)
Q Consensus 75 ~~laa~~~D~tI~~wd~~~~q~---~v~~sp~~--------~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~e 143 (1605)
|.|-+-+.|++++-.++--+.. +..|.-+| +..-+++|++| ..|+|+.|--
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v-------~~~n~n~~g~----------- 92 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAV-------YVFNWNLEGA----------- 92 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceE-------EEecCCccch-----------
Confidence 5566777777777666544321 22333222 22225677777 7777772211
Q ss_pred cCCCCcccccccCCCceEeeee-cCCCeEEEEecCceEEEEecccceEEEEEeecccccc-ccceeEeecCCceEEEEe-
Q 000378 144 GGRAPTKIKTDLKKPIVNLACH-PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL-LGAGAFAFHPTLEWLFVG- 220 (1605)
Q Consensus 144 G~~~~~~ik~d~kkpV~~LA~~-P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~-~g~~a~Af~P~g~~l~~G- 220 (1605)
|. .++.-.+-+|.+.-=. -|+-...++.+||.||+||++=+.+..-.-. |- ...--+.-.-.++.|+..
T Consensus 93 -~~---d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~----h~~~~~e~~ivv~sd~~i~~a~ 164 (238)
T KOG2444|consen 93 -HS---DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ----HNFESGEELIVVGSDEFLKIAD 164 (238)
T ss_pred -HH---HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc----ccCCCcceeEEecCCceEEeec
Confidence 11 1222222244433222 4556788999999999999999888743333 22 222233334455555555
Q ss_pred -cCCCeEEeeecC
Q 000378 221 -DRRGTLLAWDVS 232 (1605)
Q Consensus 221 -~~dgtl~~W~vs 232 (1605)
|+|.+++.|+|.
T Consensus 165 ~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 165 TSHDRVLKKWNVE 177 (238)
T ss_pred cccchhhhhcchh
Confidence 666677777665
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.78 E-value=39 Score=41.11 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHc
Q 000378 1393 CFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVT 1445 (1605)
Q Consensus 1393 ~LK~Gyk~~t~GKF~EAl~~Fr~IL~~vV~s~~E~~EvkelI~iCREYilALs 1445 (1605)
.+..+..--.+|++.+|++.+...|+++-.++--.++. ||.-|-+|.
T Consensus 376 AIsrAvsdASaGDy~~AiETllTAI~lIKqSrv~~DdR------CrvLissL~ 422 (498)
T KOG4849|consen 376 AISRAVSDASAGDYKGAIETLLTAIQLIKQSRVGHDDR------CRVLISSLE 422 (498)
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHhhccccchH------HHHHHHHHH
Confidence 35556666779999999999999999555544333322 555555544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.7 Score=43.53 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=60.3
Q ss_pred eeeeeecCCCC---ceEEEEecCCcEEeeccCC---C-----c-eEEEeCCCccccccccCceeEeccCCCcceEEeccc
Q 000378 64 VVRMAYSPTSG---HAVVAILEDCTIRSCDFDT---E-----Q-SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH 131 (1605)
Q Consensus 64 v~~lA~SP~~g---~~laa~~~D~tI~~wd~~~---~-----q-~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~ 131 (1605)
|.+||++.-+| +-|++|++|.-||.|+=+. | + +++.+...++.--+...|||=+=---.|+ |+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl--WR--- 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL--WR--- 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCccee--ee---
Confidence 78999996555 7999999999999999775 2 1 15566666554445556666222222334 44
Q ss_pred cccceeEEeeeecCCCCcccccccCCCceEeeee-cCC---CeEEEEecCceEE
Q 000378 132 RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH-PRL---PVLYVAYADGLIR 181 (1605)
Q Consensus 132 ~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~-P~~---~vL~~a~~dg~IR 181 (1605)
||... -++++++. .++ +-|.+|-.+|.|-
T Consensus 77 -------------------iKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 -------------------IKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -------------------eccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44333 36777777 443 4788888888874
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.90 E-value=3.2 Score=51.60 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=36.7
Q ss_pred CceEeeeecCC------CeEEEEec-----------CceEEEEecc-------cceEEEEEeeccccccccceeEeecCC
Q 000378 158 PIVNLACHPRL------PVLYVAYA-----------DGLIRAYNIH-------TYAVHYTLQLDNTIKLLGAGAFAFHPT 213 (1605)
Q Consensus 158 pV~~LA~~P~~------~vL~~a~~-----------dg~IR~w~i~-------t~~v~~tL~~~~~~~~~g~~a~Af~P~ 213 (1605)
-.-.||+|||- .+||+.|. +.++|+ .+. +.+++ |+..|.-..-.-+.++|.||
T Consensus 80 GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~-~l~~~~~~l~~~~~I--l~~lP~~~~H~GgrI~FgPD 156 (454)
T TIGR03606 80 GLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRY-TYDKSTQTLEKPVDL--LAGLPAGNDHNGGRLVFGPD 156 (454)
T ss_pred ceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEE-EecCCCCccccceEE--EecCCCCCCcCCceEEECCC
Confidence 35689999885 58999872 223332 221 12222 22222111123568999999
Q ss_pred ceEEE-EecCC
Q 000378 214 LEWLF-VGDRR 223 (1605)
Q Consensus 214 g~~l~-~G~~d 223 (1605)
|.+.+ +||+.
T Consensus 157 G~LYVs~GD~g 167 (454)
T TIGR03606 157 GKIYYTIGEQG 167 (454)
T ss_pred CcEEEEECCCC
Confidence 98777 88874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.77 E-value=11 Score=44.92 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=40.5
Q ss_pred CCceeEeCCCcceeeeec-------------CceEEEEeccC--Cce--eee-ccCCcceeeeeecCCCCceEEEEecCC
Q 000378 23 QPHEAAFHPNQALIAVAI-------------GTYIIEFDTLT--GSR--IAS-IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~-------------g~~I~l~d~~t--G~~--~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
.|.+++|.++|+++++.. +..|..++-.+ |+- ..+ .+--.....|++.+ +| ++| ++.+.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 788999999999998843 23788887543 442 222 33333457788888 66 444 44443
Q ss_pred cEEeecc
Q 000378 85 TIRSCDF 91 (1605)
Q Consensus 85 tI~~wd~ 91 (1605)
.+++.|.
T Consensus 92 i~~~~d~ 98 (367)
T TIGR02604 92 ILFLRDK 98 (367)
T ss_pred EEEEeCC
Confidence 3333344
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.77 E-value=6.2 Score=46.77 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=87.9
Q ss_pred ecCCCCceEEEEecCCcEEeeccCCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccce-eEEeeeecCCC
Q 000378 69 YSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSV-TVVGTVEGGRA 147 (1605)
Q Consensus 69 ~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~-~~vgt~eG~~~ 147 (1605)
|-|.++.++.+---.+.|+-||..+.+..+--+|+.-...+-.|..-.|....--...+. + ..-.. +.+-..+-.+.
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~-~-~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLD-P-DTGGKITLLAEPEDGLP 109 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEe-c-cCCceeEEeccccCCCC
Confidence 446555677788888899999998877777767766544322221111111110010122 0 00011 22222332222
Q ss_pred CcccccccCCCceEeeeecCCCeEEEEec---------CceEEEEecc-cceEEEEEeeccccccccceeEeecCCceEE
Q 000378 148 PTKIKTDLKKPIVNLACHPRLPVLYVAYA---------DGLIRAYNIH-TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWL 217 (1605)
Q Consensus 148 ~~~ik~d~kkpV~~LA~~P~~~vL~~a~~---------dg~IR~w~i~-t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l 217 (1605)
. -.-.-+.++|||.+-+.-.. -.+-++|.+. .+.+.--+.. |......+|||||++++
T Consensus 110 ~--------~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----~~~~~NGla~SpDg~tl 177 (307)
T COG3386 110 L--------NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD----DLTIPNGLAFSPDGKTL 177 (307)
T ss_pred c--------CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC----cEEecCceEECCCCCEE
Confidence 1 12245678899887766544 2234788888 6777734444 47778899999999999
Q ss_pred EEec-CCCeEEeeecCC
Q 000378 218 FVGD-RRGTLLAWDVSI 233 (1605)
Q Consensus 218 ~~G~-~dgtl~~W~vs~ 233 (1605)
.+-| ..++|..|+...
T Consensus 178 y~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 178 YVADTPANRIHRYDLDP 194 (307)
T ss_pred EEEeCCCCeEEEEecCc
Confidence 9776 669999998863
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.40 E-value=34 Score=40.55 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=53.8
Q ss_pred cCCCceEeeeecCCCeEEEEecCc--------------eEEE--Eeccc-c--eEEEEEeecccc---ccccceeEeecC
Q 000378 155 LKKPIVNLACHPRLPVLYVAYADG--------------LIRA--YNIHT-Y--AVHYTLQLDNTI---KLLGAGAFAFHP 212 (1605)
Q Consensus 155 ~kkpV~~LA~~P~~~vL~~a~~dg--------------~IR~--w~i~t-~--~v~~tL~~~~~~---~~~g~~a~Af~P 212 (1605)
-.+-.-+||++|||..|+++-+.. .+|+ ||+.+ + .-.|....|+.- ...+++.+++-|
T Consensus 145 ~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~ 224 (326)
T PF13449_consen 145 NNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP 224 (326)
T ss_pred CCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC
Confidence 356788999999999888876433 1444 66665 3 455666665432 467899999999
Q ss_pred CceEEE---E--ecCCCeEEeeecC
Q 000378 213 TLEWLF---V--GDRRGTLLAWDVS 232 (1605)
Q Consensus 213 ~g~~l~---~--G~~dgtl~~W~vs 232 (1605)
+++.|+ . .....+.++..++
T Consensus 225 d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 225 DGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred CCcEEEEEccCCCCccceEEEEEEE
Confidence 999877 1 2234566666666
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.6 Score=47.00 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.6
Q ss_pred CCCCCceeEeCCCcceeeeecCceEEEEecc
Q 000378 20 KPLQPHEAAFHPNQALIAVAIGTYIIEFDTL 50 (1605)
Q Consensus 20 ~~~~v~~~aF~P~gallA~a~g~~I~l~d~~ 50 (1605)
.|..++|++||.|| .|||+.|..|.++|..
T Consensus 3 ~ps~~~~l~WS~Dg-~laV~t~~~v~IL~~~ 32 (173)
T PF12657_consen 3 SPSCPNALAWSEDG-QLAVATGESVHILDPQ 32 (173)
T ss_pred CCCCCcCeeECCCC-CEEEEcCCeEEEEecc
Confidence 57789999999999 5677778899999444
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=40 Score=44.15 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=51.5
Q ss_pred CCCceeEeCCCcceeeeecCc------eEEEEeccCCceeee-ccCCcceeeeeecCCCCceEEEEecC------CcEEe
Q 000378 22 LQPHEAAFHPNQALIAVAIGT------YIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILED------CTIRS 88 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~a~g~------~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D------~tI~~ 88 (1605)
..+....+||||++||-+.|. +|.+-|..||..+.. +.... ..++|+| ||+.+.-...| ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 467888999999999986654 588889999975544 33322 5699999 77666555432 47899
Q ss_pred eccCCC
Q 000378 89 CDFDTE 94 (1605)
Q Consensus 89 wd~~~~ 94 (1605)
|++.|.
T Consensus 204 h~lgt~ 209 (686)
T PRK10115 204 HTIGTP 209 (686)
T ss_pred EECCCC
Confidence 999986
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.10 E-value=6.2 Score=53.45 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=102.8
Q ss_pred CCceeEeCCCcceeee-ecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEE----eeccCCCceE
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIR----SCDFDTEQSF 97 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~----~wd~~~~q~~ 97 (1605)
.+-++.|+-++--|.+ ..+..|.+-|+.|+-..-+-.....|.+|++|| |.++|+-+.-+.|+. .|+...|+..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 5667777777655444 444467777999887777777888999999999 999999999999985 4666667664
Q ss_pred EEeCCCcc---ccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCc---------eEeeee
Q 000378 98 VLHSPEKK---MESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI---------VNLACH 165 (1605)
Q Consensus 98 v~~sp~~~---~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV---------~~LA~~ 165 (1605)
|.-+.+ -..++ |- +++... -..++|...+=|....|-+ +++-+.
T Consensus 149 --~~d~~~~sk~v~VG----------------wG----rkeTqf--rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 149 --DADDERKSKFVNVG----------------WG----RKETQF--RGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR 204 (1265)
T ss_pred --ccccccccccceec----------------cc----ccceee--ecchhhhcccccccccccccchhhccCCceEEEc
Confidence 443333 22211 21 111111 1122222233333333322 245666
Q ss_pred cCCCeEEE-----EecCceEEEEecccceEEEEEeeccccccccc-eeEeecCCceEEEE
Q 000378 166 PRLPVLYV-----AYADGLIRAYNIHTYAVHYTLQLDNTIKLLGA-GAFAFHPTLEWLFV 219 (1605)
Q Consensus 166 P~~~vL~~-----a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~-~a~Af~P~g~~l~~ 219 (1605)
=||+..|| ....+.||+||-. |+.- - ....-.|- .+|++.|.|-|+++
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g~Ln----s-~se~~~~l~~~LsWkPsgs~iA~ 258 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-GALN----S-TSEPVEGLQHSLSWKPSGSLIAA 258 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-chhh----c-ccCcccccccceeecCCCCeEee
Confidence 89999998 3333899999987 4433 1 11122222 38999999999994
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=28 Score=41.45 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=97.4
Q ss_pred CCceeEeCCCcceeeeecCceEEEEeccCCc---eeee-c-cCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceE
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGS---RIAS-I-DINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~---~~~~-l-~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~ 97 (1605)
...+++|..++..+|++.+..|..= -..|+ ++.. + ....++.+++|.+ .+..++|-.....|+-|- .++-
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~--~~~~~~G~~g~i~~S~Dg--G~tW 121 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLET-NDGGETWEERSLDLPEENFRLISISFKG--DEGWIVGQPSLLLHTTDG--GKNW 121 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEE-cCCCCCceECccCCcccccceeeeEEcC--CcEEEeCCCceEEEECCC--CCCC
Confidence 6788999988888888655444331 11222 1111 1 1233467788865 234555533333444332 2221
Q ss_pred EEe-CCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEec
Q 000378 98 VLH-SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1605)
Q Consensus 98 v~~-sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~ 176 (1605)
... +++. ... +...+ .++.+-.. |.. -..+.+.-+.-|++.=+++.++..-.+.+++++|++.+++++.
T Consensus 122 ~~~~~~~~--~~~-~~~~i-~~~~~~~~--~~~---g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~- 191 (334)
T PRK13684 122 TRIPLSEK--LPG-SPYLI-TALGPGTA--EMA---TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS- 191 (334)
T ss_pred eEccCCcC--CCC-CceEE-EEECCCcc--eee---eccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-
Confidence 111 1100 000 00001 11111111 110 1234455577788888888888888899999999999888887
Q ss_pred CceE-EEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEE
Q 000378 177 DGLI-RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 177 dg~I-R~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~ 227 (1605)
.|.| +-+| ++....+... .--...+.+++|.|++..+++|.. |.++
T Consensus 192 ~G~i~~s~~--~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg~~-G~~~ 238 (334)
T PRK13684 192 RGNFYSTWE--PGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLARG-GQIR 238 (334)
T ss_pred CceEEEEcC--CCCCeEEEee--CCCcccceeeeEcCCCCEEEEecC-CEEE
Confidence 5555 3322 2322222111 112346678999999999888864 6654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=87.98 E-value=6.4 Score=45.44 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=82.9
Q ss_pred ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCc-e-----------EEEeCCCccccccccCceeEeccCCCcce
Q 000378 58 IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ-S-----------FVLHSPEKKMESISVDTEVHLALTPLQPV 125 (1605)
Q Consensus 58 l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q-~-----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~ 125 (1605)
-++-.-+..|+|.|+++...++.-+++.|.--|.+.+- . .|+|.-+++.. +++++.- +++
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~v-l~~Er~~-------~L~ 89 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYV-LSEERDQ-------RLY 89 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEE-EEETTTT-------EEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEE-EEEcCCC-------cEE
Confidence 34555588999999777777888888888777764331 1 34444333322 2221111 233
Q ss_pred EEeccccccceeEEeeeecCCCCccccc----ccCCCceEeeeecCCCeEEEEecCceEEEEeccc---ceEEEEEee--
Q 000378 126 VFFGFHRRMSVTVVGTVEGGRAPTKIKT----DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT---YAVHYTLQL-- 196 (1605)
Q Consensus 126 vw~~~~~~~s~~~vgt~eG~~~~~~ik~----d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t---~~v~~tL~~-- 196 (1605)
++.- ....+.+. .....+++. .-+|-+-+||+.|...-|+++=+..-.++|.+.. .........
T Consensus 90 ~~~~---~~~~~~~~----~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 90 IFTI---DDDTTSLD----RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EEEE-------TT------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred EEEE---eccccccc----hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 3330 00000000 000112222 2346799999999999999999888888888875 222211111
Q ss_pred --ccccccccceeEeecCC-ceEEEEecCCCeEEeeecC
Q 000378 197 --DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 197 --~~~~~~~g~~a~Af~P~-g~~l~~G~~dgtl~~W~vs 232 (1605)
+.-.+..-..+++|||. |++++..+.++.|..+|..
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 12234446779999996 5677788888888888844
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.66 E-value=4.6 Score=46.01 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCceeEeCCCcceeeeecCceEEEEecc-CCceeee-ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCCceEEEe
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTL-TGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~-tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~ 100 (1605)
.|.+++=++.++|++++-|+.|..||+. .++...- ...-+.|.+|+||. -|+.||+.=++...---| ..++|
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~-----fvR~Y 92 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVD-----FVRAY 92 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccce-----EEEEE
Confidence 3455555577789888899999999987 3333333 55558999999999 789988875554322011 11111
Q ss_pred -CCCccccccccCceeEeccCCCcceEEeccccccceeEEee--eecCC-CCcccccccCCCceEeeeecCCCeEEEEec
Q 000378 101 -SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT--VEGGR-APTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1605)
Q Consensus 101 -sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt--~eG~~-~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~ 176 (1605)
+=+.... ..+-..+ |+.++.+.+ -+.-+ ..-.|..-|+.++.++||=|-..-|.+|+
T Consensus 93 ~NWr~~~~-~~~~v~v-----------------RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~- 153 (215)
T PF14761_consen 93 FNWRSQKE-ENSPVRV-----------------RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC- 153 (215)
T ss_pred EEhhhhcc-cCCcEEE-----------------EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-
Confidence 1111100 0111111 222222211 11111 13456677888999999999999999999
Q ss_pred CceEEEEecccceE
Q 000378 177 DGLIRAYNIHTYAV 190 (1605)
Q Consensus 177 dg~IR~w~i~t~~v 190 (1605)
++.+-+|-......
T Consensus 154 ~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 154 GNKLVLFTLKYQTI 167 (215)
T ss_pred CCEEEEEEEEEEEE
Confidence 55555887665554
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=87.43 E-value=18 Score=44.58 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=78.2
Q ss_pred cCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEE---ec---CCcEEeeccCCCceEEEeCCC-ccccc---c
Q 000378 40 IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI---LE---DCTIRSCDFDTEQSFVLHSPE-KKMES---I 109 (1605)
Q Consensus 40 ~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~---~~---D~tI~~wd~~~~q~~v~~sp~-~~~~~---~ 109 (1605)
-.+.|+--|..||....++.-..-+..+-|||+|.+.|+=. -+ |..|-..|.+.....-.|... +++.. =
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw 245 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW 245 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence 35688889999999988888777888999999998665542 22 334444444433332222211 11110 0
Q ss_pred ccCceeEeccCCCcceEEe-ccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecC-----------
Q 000378 110 SVDTEVHLALTPLQPVVFF-GFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD----------- 177 (1605)
Q Consensus 110 s~d~~ih~a~t~~~l~vw~-~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~d----------- 177 (1605)
+.||.. . |+ +..+......|..+...+..-+.=+.-. +-.-+-.++|+.+++-=..|
T Consensus 246 ~~DG~~--------i--~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 246 VPDGST--------I--WYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp -TTSS---------E--EEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------
T ss_pred cCCCCE--------E--EEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 222221 1 33 2222222222322222111000000000 11222233888776543322
Q ss_pred -----ceEEEEecccceEEEEEee-ccccc-cccc-----eeEeecCCceEEE-EecCCCeEEeeecC
Q 000378 178 -----GLIRAYNIHTYAVHYTLQL-DNTIK-LLGA-----GAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 178 -----g~IR~w~i~t~~v~~tL~~-~~~~~-~~g~-----~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
-.|.++|++++..+ .|-. +.+.+ +.|- --.-|+|||+||+ +-+..|...++=|.
T Consensus 315 ~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ------EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred eecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 25666777777665 3333 11010 0111 2568999999998 88888887776554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.7 Score=51.74 Aligned_cols=164 Identities=20% Similarity=0.184 Sum_probs=106.9
Q ss_pred CceeEeCCCcceeeeecCceEEEEeccCCceeeec-cCCcceeeeeecCCCCc-----------eEEEEecCCcEEeecc
Q 000378 24 PHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASI-DINSPVVRMAYSPTSGH-----------AVVAILEDCTIRSCDF 91 (1605)
Q Consensus 24 v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l-~~~~~v~~lA~SP~~g~-----------~laa~~~D~tI~~wd~ 91 (1605)
-.++-|+|.| +||-+.+.-|.+-|..+=..|+++ -|.+.|+++-|+|...| .||++...|.|-+||+
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 4578899887 778899999999999999999994 45677899988865432 4677778888888888
Q ss_pred CCCceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeE
Q 000378 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1605)
Q Consensus 92 ~~~q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL 171 (1605)
.+...-.-+++..... -.+ -|||. |..++.++ ||.||
T Consensus 97 ~~~s~~~~l~~~~~~~-----qdl--------~W~~~---rd~Srd~L----------------------laIh~----- 133 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSV-----QDL--------CWVPA---RDDSRDVL----------------------LAIHG----- 133 (1062)
T ss_pred hhhhhhhhhcCCCcch-----hhe--------eeeec---cCcchhee----------------------EEecC-----
Confidence 7754433344333211 111 46666 34455555 45553
Q ss_pred EEEecCceEEEEecccceEEEEEeeccccccccceeEeecC-CceEEEEecCCCeEEeeecC-CCCCeeee
Q 000378 172 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVS-IERPSMIG 240 (1605)
Q Consensus 172 ~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P-~g~~l~~G~~dgtl~~W~vs-~~~~~m~g 240 (1605)
-.+|-+||..||+-.+.-.- --....+|-|-| |.+++-+=+..|-++.=+.. ...|...|
T Consensus 134 -----ss~lvLwntdtG~k~Wk~~y----s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 134 -----SSTLVLWNTDTGEKFWKYDY----SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred -----CcEEEEEEccCCceeecccc----CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 34567999999987643322 223445788877 66777665666666666555 44444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=4.3 Score=42.29 Aligned_cols=90 Identities=10% Similarity=0.018 Sum_probs=62.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhHHHHHHHHHHcCCHHH
Q 000378 851 IYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSA 930 (1605)
Q Consensus 851 ~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~~fe~ll~L~i~~gn~~a 930 (1605)
......|+++.|++.++. .++.. |.-.+.|.. +|..+.+.|+++.|.++|++.-+ +.-+|.+.
T Consensus 32 ~~~~~~g~~~~A~~~~~~----al~~~--P~~~~a~~~---lg~~~~~~g~~~~A~~~y~~Al~--------l~p~~~~a 94 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSW----LVMAQ--PWSWRAHIA---LAGTWMMLKEYTTAINFYGHALM--------LDASHPEP 94 (144)
T ss_pred HHHHHcCCHHHHHHHHHH----HHHcC--CCcHHHHHH---HHHHHHHHhhHHHHHHHHHHHHh--------cCCCCcHH
Confidence 345678899999877644 33222 223466666 99999999999999999998754 34567777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 000378 931 MRRLAQRLEEEGANPELRRYCERILRV 957 (1605)
Q Consensus 931 Lrrma~~aE~~~~D~elr~~~eRil~~ 957 (1605)
+..++..+...+...+-..++++.+.+
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777666666666666666654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=10 Score=45.01 Aligned_cols=135 Identities=10% Similarity=0.085 Sum_probs=77.1
Q ss_pred CCceeEeCCCcceeeeecCceEE-EEeccCCceeee--ccCCcceeeeeecCCCCceEEEEecCCcEEe--------ecc
Q 000378 23 QPHEAAFHPNQALIAVAIGTYII-EFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCTIRS--------CDF 91 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~-l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~--------wd~ 91 (1605)
.++++.++|++.+++++.+..|. .+| ..|..-.. ..-...+..|++.| ++..++++ +++.|++ |..
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 67899999999999996655554 333 22332222 34556789999999 66666655 5577643 331
Q ss_pred -CCC-------ceEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccc--cccCCCceE
Q 000378 92 -DTE-------QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK--TDLKKPIVN 161 (1605)
Q Consensus 92 -~~~-------q~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik--~d~kkpV~~ 161 (1605)
.+. -..++|+|+++....+.++.+ +. +.-|+..=..++ ..+--....
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v-----------~~------------S~d~G~tW~~~~~~~~~~~~~~~ 307 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTL-----------LV------------SKDGGKTWEKDPVGEEVPSNFYK 307 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEcCCCeE-----------EE------------eCCCCCCCeECCcCCCCCcceEE
Confidence 111 014667777766665666555 11 111211111111 011125778
Q ss_pred eeeecCCCeEEEEecCceEEEEe
Q 000378 162 LACHPRLPVLYVAYADGLIRAYN 184 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~dg~IR~w~ 184 (1605)
++|..+...+++|. .|+|-.|+
T Consensus 308 ~~~~~~~~~~~~G~-~G~il~~~ 329 (334)
T PRK13684 308 IVFLDPEKGFVLGQ-RGVLLRYV 329 (334)
T ss_pred EEEeCCCceEEECC-CceEEEec
Confidence 88887777766665 88886665
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.02 E-value=1 Score=59.74 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=57.2
Q ss_pred CCCCceeEeCCCcceeeeec-CceEEEEeccCCceeee-ccCCcceeeeeec-CC-CCceEEEEecCCcEEeecc
Q 000378 21 PLQPHEAAFHPNQALIAVAI-GTYIIEFDTLTGSRIAS-IDINSPVVRMAYS-PT-SGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~a~-g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~S-P~-~g~~laa~~~D~tI~~wd~ 91 (1605)
..+|.|+||+-||.+|+.|. +++|+.||.-+++.+.. .++++|++.+-++ =+ +++++..+..-|. .|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 35899999999999999954 44999999999999999 8999999999998 22 4477888888887 4554
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.7 Score=55.09 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=61.5
Q ss_pred CCCCceeEeCCCcceeee-ecCceEEEEeccCCceeeecc-CCccee-eeeecCCCCceEEEEecCCcEEeeccCCCce
Q 000378 21 PLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASID-INSPVV-RMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~-~~~~v~-~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~ 96 (1605)
|.-+--+-|.|-=-+||. -..++|.+.=.. =.|+-++. ++-.|+ +++|-| ||..||+|..||+|+++|..+...
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 446778899999999999 677788888766 55566644 788887 999999 799999999999999999988544
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.21 E-value=0.86 Score=58.19 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=60.2
Q ss_pred CceEeeeecCCCeEEEEecCceEEEEecccceE---EEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCC
Q 000378 158 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV---HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v---~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
-+...-.|++.-+.|.|++.|.|-.|-++++.+ .|-=..|-+ |-.-|.|++++++|+-|++||+.|+|.+=-++.
T Consensus 78 ~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~-~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 78 ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS-HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc-CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 344455569999999999999999999888544 232234555 788999999999999999999999999876665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=85.82 E-value=13 Score=35.41 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=41.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000378 851 IYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIA 913 (1605)
Q Consensus 851 ~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~ 913 (1605)
....+.|+++.|.+.+.. +.+ ..|..+.+.+.+-. +|+...+.|+++.|.++|+.+-
T Consensus 10 ~~~~~~~~~~~A~~~~~~-~~~--~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQA-FLK--KYPKSTYAPNAHYW---LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHcCCHHHHHHHHHH-HHH--HCCCccccHHHHHH---HHHHHHhhccHHHHHHHHHHHH
Confidence 345677899999988855 221 23444434445555 8999999999999999999765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=85.39 E-value=43 Score=39.36 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=110.8
Q ss_pred CceeEeCCCcceeeeec-------------CceEEEEeccCCceeeeccCCcce-------eeeeecCCC-----CceEE
Q 000378 24 PHEAAFHPNQALIAVAI-------------GTYIIEFDTLTGSRIASIDINSPV-------VRMAYSPTS-----GHAVV 78 (1605)
Q Consensus 24 v~~~aF~P~gallA~a~-------------g~~I~l~d~~tG~~~~~l~~~~~v-------~~lA~SP~~-----g~~la 78 (1605)
|..+.--+.|+|-++.- .-.|..||..|++.+....+++.+ +.|+.-..+ ++.-+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 44444555566655522 238999999999998885555444 345554322 45566
Q ss_pred EEecCCcEEeeccCCCce-EEEeC-----CC-------ccccccccCceeEeccCCCcc---eEEeccccccce--eEEe
Q 000378 79 AILEDCTIRSCDFDTEQS-FVLHS-----PE-------KKMESISVDTEVHLALTPLQP---VVFFGFHRRMSV--TVVG 140 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~q~-~v~~s-----p~-------~~~~~~s~d~~ih~a~t~~~l---~vw~~~~~~~s~--~~vg 140 (1605)
+=+....|-..|+.+.+. .|+++ |+ |+.. .-.|+..++|++|+.+ |++| |-..+. ..|-
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~-~~~dg~~gial~~~~~d~r~LYf--~~lss~~ly~v~ 159 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESF-QWPDGIFGIALSPISPDGRWLYF--HPLSSRKLYRVP 159 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEE-EETTSEEEEEE-TTSTTS-EEEE--EETT-SEEEEEE
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceE-ecCCCccccccCCCCCCccEEEE--EeCCCCcEEEEE
Confidence 666667888999999755 44444 32 2211 2456788999999776 5555 222222 2333
Q ss_pred e--eecCCCCccc-----cccc-CC--CceEeeeecCCCeEEEEecCceEEEEeccc----ceEEEEEeeccccccccce
Q 000378 141 T--VEGGRAPTKI-----KTDL-KK--PIVNLACHPRLPVLYVAYADGLIRAYNIHT----YAVHYTLQLDNTIKLLGAG 206 (1605)
Q Consensus 141 t--~eG~~~~~~i-----k~d~-kk--pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t----~~v~~tL~~~~~~~~~g~~ 206 (1605)
| +.-.+..... -+++ +| .-.++++.++|-+.++--..+-|-.||.++ .... +|--|+. .+.-..
T Consensus 160 T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~-~l~~d~~-~l~~pd 237 (287)
T PF03022_consen 160 TSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFE-ILAQDPR-TLQWPD 237 (287)
T ss_dssp HHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEE-EEEE-CC--GSSEE
T ss_pred HHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchh-eeEEcCc-eeeccc
Confidence 3 3222222222 1122 22 567889999998888999999999999987 2222 3344443 467788
Q ss_pred eEeecC--CceEEEEec
Q 000378 207 AFAFHP--TLEWLFVGD 221 (1605)
Q Consensus 207 a~Af~P--~g~~l~~G~ 221 (1605)
+|++.+ +|+.-+.-+
T Consensus 238 ~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 238 GLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEE-T--TS-EEEEE-
T ss_pred eeeeccccCceEEEEEC
Confidence 999999 777766544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=85.27 E-value=1.8 Score=38.34 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000378 850 GIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIA 913 (1605)
Q Consensus 850 ~~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~ 913 (1605)
.....+.|+|+.|.+.+++=-.+. |...+.|.. ||+.+.+.|+++.|.+.|+++-
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~---lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYL---LGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHH---HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHH
Confidence 445788999999999987632222 334477777 9999999999999999999763
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=84.80 E-value=7.3 Score=40.48 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=49.1
Q ss_pred CCceeEeCC-Cc----ceeeeecCceEEEEeccCCceeeeccCCcceeeeeecCCCCceEEEEecCCcEEeecc
Q 000378 23 QPHEAAFHP-NQ----ALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1605)
Q Consensus 23 ~v~~~aF~P-~g----allA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~ 91 (1605)
.|+++||.. || .||+.+-|..|++|+.. ..+..+.....|+.|+.... +..+.++++|||-++|.
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYDR 70 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEeC
Confidence 367777766 33 46777999999999965 66666888889999988863 56788888888755544
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.65 E-value=23 Score=46.63 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=28.3
Q ss_pred CceEeeeecCC---CeEEEEecCceEEEEecccce
Q 000378 158 PIVNLACHPRL---PVLYVAYADGLIRAYNIHTYA 189 (1605)
Q Consensus 158 pV~~LA~~P~~---~vL~~a~~dg~IR~w~i~t~~ 189 (1605)
.|..+.+||.+ ..|.+=..|++||+||+..-.
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 79999999884 899999999999999998643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.48 E-value=24 Score=41.46 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=97.6
Q ss_pred HHHhhhhhhhh-hccHHHHHHHHHhcccccccCHHHHHHHHcCCCCcc-chhhhhhccCCcchhhhhHHHHHHhcCHHHH
Q 000378 785 GFATMQQYFEQ-KLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCG-DLAVSLSQAGPQFTQVLRGIYAIKALRFSTA 862 (1605)
Q Consensus 785 G~atl~~~~e~-k~dl~~~L~~IisrfDSsrvs~~~Ld~L~k~g~~~~-dLA~sla~~~pqf~q~~R~~~Aikag~~e~A 862 (1605)
..+++-+.|+. +.|+ ++ ++.-.-+-....+-..+.++++..-.++ |-++..+ =....+..|||+.|
T Consensus 52 a~~al~~~~~~~p~d~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~----------~gk~~~~~g~~~~A 119 (257)
T COG5010 52 AAAALGAAVLRNPEDL-SI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA----------QGKNQIRNGNFGEA 119 (257)
T ss_pred HHHHHHHHHhcCcchH-HH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH----------HHHHHHHhcchHHH
Confidence 33444444554 4444 33 5555555555556666777777443333 3222101 23347889999999
Q ss_pred HHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhHH--------HHHHHHHHcCCHHHHHHH
Q 000378 863 LSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYE--------SILDLFICHLNPSAMRRL 934 (1605)
Q Consensus 863 ~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~~fe--------~ll~L~i~~gn~~aLrrm 934 (1605)
++++.. ...++|+ -.+.|-- ||..+.+.|+++.|.-.|-+.-++. -|-.+|++.||.+.=+++
T Consensus 120 ~~~~rk-----A~~l~p~-d~~~~~~---lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 120 VSVLRK-----AARLAPT-DWEAWNL---LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred HHHHHH-----HhccCCC-ChhhhhH---HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 999977 3333222 2366766 9999999999999999998876653 567788999999998888
Q ss_pred HHHHHHhcC-CHHHHHHHHHhh
Q 000378 935 AQRLEEEGA-NPELRRYCERIL 955 (1605)
Q Consensus 935 a~~aE~~~~-D~elr~~~eRil 955 (1605)
...+-.... |..++...-++.
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHH
Confidence 877766544 777776644433
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.78 E-value=1.8 Score=52.71 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=69.3
Q ss_pred ceeEEeeeecCCCCcccccccCCCceEeeeecCCC-eEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCC
Q 000378 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT 213 (1605)
Q Consensus 135 s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~-vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~ 213 (1605)
+.+..+.+-+|.. -|+.|||||... +|-+||-|..|++.|+.|-.+.-+... | .-+-+.+|-=|
T Consensus 182 ~fkssq~lp~~g~----------~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----~-~~~wSC~wDld 246 (463)
T KOG1645|consen 182 DFKSSQILPGEGS----------FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----Y-NQIWSCCWDLD 246 (463)
T ss_pred Ccchhhcccccch----------hhhhhccCccccceeeeeccCceEEEEecccceeeeheec----c-CCceeeeeccC
Confidence 4444444555555 899999999888 899999999999999999888755544 5 56678888666
Q ss_pred ceEEE-EecCCCeEEeeecC-CCCCee
Q 000378 214 LEWLF-VGDRRGTLLAWDVS-IERPSM 238 (1605)
Q Consensus 214 g~~l~-~G~~dgtl~~W~vs-~~~~~m 238 (1605)
-+... .|+..|-++++|+. |+.|-|
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~ 273 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLM 273 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHh
Confidence 66655 99999999999998 666544
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.70 E-value=0.52 Score=59.59 Aligned_cols=187 Identities=18% Similarity=0.196 Sum_probs=111.0
Q ss_pred CCceeEeCC--Ccceeee-ecCceEEEEeccCC---ceeeeccCCcceeeeeecCCCCceEEEEe----cCCcEEeeccC
Q 000378 23 QPHEAAFHP--NQALIAV-AIGTYIIEFDTLTG---SRIASIDINSPVVRMAYSPTSGHAVVAIL----EDCTIRSCDFD 92 (1605)
Q Consensus 23 ~v~~~aF~P--~gallA~-a~g~~I~l~d~~tG---~~~~~l~~~~~v~~lA~SP~~g~~laa~~----~D~tI~~wd~~ 92 (1605)
-+.|++... |+-+||+ .-++.|-+.....- +..-+-.+--+++.+||++.|-..||||+ .|-.+++||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456665443 4468999 45567777664421 23334677778899999999999999997 47889999998
Q ss_pred CC----ceEEEeCCCccccccccCceeEeccCCCc--ceEEecccccc-----------ceeEEeeeecCCCCccccccc
Q 000378 93 TE----QSFVLHSPEKKMESISVDTEVHLALTPLQ--PVVFFGFHRRM-----------SVTVVGTVEGGRAPTKIKTDL 155 (1605)
Q Consensus 93 ~~----q~~v~~sp~~~~~~~s~d~~ih~a~t~~~--l~vw~~~~~~~-----------s~~~vgt~eG~~~~~~ik~d~ 155 (1605)
+. .....|+- ++.+ +...+ .++| ..|--|.|.|+ +...|.
T Consensus 138 s~ltvPke~~~fs~-~~l~---gqns~----cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--------------- 194 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS-STLD---GQNSV----CWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--------------- 194 (783)
T ss_pred cccCCCcccccccc-cccc---Ccccc----ccccCcchhhcccccchhhhhhhhhhhhhhhhhh---------------
Confidence 86 22666665 2211 11111 1111 11122333322 111110
Q ss_pred CCCceEeeeec-CCCeEEEEecCceEEEEe-cccceEEE-EEeeccccccccceeEeecCCc--eEEEEecCCCeEEeee
Q 000378 156 KKPIVNLACHP-RLPVLYVAYADGLIRAYN-IHTYAVHY-TLQLDNTIKLLGAGAFAFHPTL--EWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 156 kkpV~~LA~~P-~~~vL~~a~~dg~IR~w~-i~t~~v~~-tL~~~~~~~~~g~~a~Af~P~g--~~l~~G~~dgtl~~W~ 230 (1605)
-|-|.++...| ++-.+++-+ ||.|-+|| --+.+... +++.|+--+---+-+|||.|+- ...+.--.++||++.|
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 14677888899 666666666 99999999 22222221 2333322222246789998864 4333444779999999
Q ss_pred cCC
Q 000378 231 VSI 233 (1605)
Q Consensus 231 vs~ 233 (1605)
+..
T Consensus 274 i~~ 276 (783)
T KOG1008|consen 274 ICV 276 (783)
T ss_pred ccc
Confidence 874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=83.66 E-value=9.6 Score=32.36 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=51.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhHHHHHHHHHHcCCHHHH
Q 000378 852 YAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAM 931 (1605)
Q Consensus 852 ~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~~fe~ll~L~i~~gn~~aL 931 (1605)
...+.|+++.|+..++.-... .| .....|.. +|...+..|+++.|.++|+..-+. ...+.+..
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~ 71 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL---DP---DNADAYYN---LAAAYYKLGKYEEALEDYEKALEL--------DPDNAKAY 71 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc---CC---ccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhC--------CCcchhHH
Confidence 345678999999888663322 22 12255665 888889999999999999876431 22333455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 000378 932 RRLAQRLEEEGANPELRRYCERI 954 (1605)
Q Consensus 932 rrma~~aE~~~~D~elr~~~eRi 954 (1605)
..++......+.......+.++.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555554433333333334433
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=83.61 E-value=52 Score=39.39 Aligned_cols=147 Identities=19% Similarity=0.156 Sum_probs=78.7
Q ss_pred ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCCC--ce----------EEEeCCCccccccccCceeEeccCCCcce
Q 000378 58 IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE--QS----------FVLHSPEKKMESISVDTEVHLALTPLQPV 125 (1605)
Q Consensus 58 l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~--q~----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~ 125 (1605)
.+....+..+..++ ||+.|+++.......+||--.. ++ .+.|+||+...-+.+++.+++.--+...-
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcc
Confidence 44456678888888 9988888877777789986531 11 89999999987778888884433222222
Q ss_pred EEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeecccccccc-
Q 000378 126 VFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG- 204 (1605)
Q Consensus 126 vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g- 204 (1605)
-|. -+..| +|+ -.--|-.||+.|+..+.++|. .|++ ++-...|. |-+-|+...-+.
T Consensus 220 ~w~---------------~~~~~--~~~-~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk---tW~~~~~~~~~~~ 276 (302)
T PF14870_consen 220 TWS---------------EPIIP--IKT-NGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK---TWQKDRVGENVPS 276 (302)
T ss_dssp EE------------------B-T--TSS---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS---S-EE-GGGTTSSS
T ss_pred ccc---------------cccCC--ccc-CceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc---cceECccccCCCC
Confidence 233 22220 000 011367899999999999888 5555 55555554 445565554333
Q ss_pred -ceeEeecCCceEEEEecCCCeEEee
Q 000378 205 -AGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 205 -~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
...+-|-+. +-.|+=+.||.|+=|
T Consensus 277 n~~~i~f~~~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 277 NLYRIVFVNP-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---EEEEEET-TEEEEE-STTEEEEE
T ss_pred ceEEEEEcCC-CceEEECCCcEEEEe
Confidence 557777644 556655567777765
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.50 E-value=9.7 Score=49.85 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=53.1
Q ss_pred CceEeeee--cCCCeEEEEecCceEEEEecccc-eEEEEEeeccccccccceeEeec-----CCc-eEEEEecCCCeEEe
Q 000378 158 PIVNLACH--PRLPVLYVAYADGLIRAYNIHTY-AVHYTLQLDNTIKLLGAGAFAFH-----PTL-EWLFVGDRRGTLLA 228 (1605)
Q Consensus 158 pV~~LA~~--P~~~vL~~a~~dg~IR~w~i~t~-~v~~tL~~~~~~~~~g~~a~Af~-----P~g-~~l~~G~~dgtl~~ 228 (1605)
..|+||+| ....++|+++.-..|-++-..-. ...|.-. ..-|..-|.++.|= |+| .||+..|-.|.+-+
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~--s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP--SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc--ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 68999999 99999999998888877655542 1111111 11266788899994 444 48889999999998
Q ss_pred eecC
Q 000378 229 WDVS 232 (1605)
Q Consensus 229 W~vs 232 (1605)
|++.
T Consensus 243 ~~I~ 246 (717)
T PF08728_consen 243 FKIK 246 (717)
T ss_pred EEEE
Confidence 8873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=83.12 E-value=19 Score=44.25 Aligned_cols=130 Identities=13% Similarity=0.166 Sum_probs=78.8
Q ss_pred eeEeCCCcceeeeecCceEE-EEeccCCce--e-eeccCCcceeeeeecCCCCceEEEEecCCcEE-e------e---cc
Q 000378 26 EAAFHPNQALIAVAIGTYII-EFDTLTGSR--I-ASIDINSPVVRMAYSPTSGHAVVAILEDCTIR-S------C---DF 91 (1605)
Q Consensus 26 ~~aF~P~gallA~a~g~~I~-l~d~~tG~~--~-~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~-~------w---d~ 91 (1605)
.+..++||.+++++....+. -|| .|.. . ........+.+|+|++ +|++++++ .++.|. + | ++
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~S~d~G~~~~~~~f 318 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYVSKGTGLTEEDFDF 318 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEEecCCCCcccccce
Confidence 45778999999996655554 455 2332 2 2255667789999998 77777766 445542 2 2 11
Q ss_pred C--CCc------eEEEeCCCccccccccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccc--cccCCCceE
Q 000378 92 D--TEQ------SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK--TDLKKPIVN 161 (1605)
Q Consensus 92 ~--~~q------~~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik--~d~kkpV~~ 161 (1605)
. ... +.+.|.+|++....+.++.+ +. +..|+..=++++ +....+..+
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v-----------~~------------s~D~G~tW~~~~~~~~~~~~ly~ 375 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGIL-----------LR------------STDGGKSWKRDKGADNIAANLYS 375 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEECCCcE-----------EE------------eCCCCcceeEccccCCCCcceeE
Confidence 1 101 24667777776666666655 22 334444434444 344457789
Q ss_pred eeeecCCCeEEEEecCceEEEE
Q 000378 162 LACHPRLPVLYVAYADGLIRAY 183 (1605)
Q Consensus 162 LA~~P~~~vL~~a~~dg~IR~w 183 (1605)
+.|.++....++|. +|+|--|
T Consensus 376 v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 376 VKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred EEEcCCCceEEEeC-CcEEEEe
Confidence 99988877666665 8887444
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.40 E-value=2.9 Score=54.18 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=7.9
Q ss_pred HHHHHHHHHhcCCCCc
Q 000378 1525 LRSLIDMCVQRGLSNK 1540 (1605)
Q Consensus 1525 ARKIL~~CEqnptDav 1540 (1605)
.--+...||+.-.|..
T Consensus 864 LHfLae~~e~kypd~l 879 (1102)
T KOG1924|consen 864 LHFLAEICEEKYPDIL 879 (1102)
T ss_pred HHHHHHHHHHhChhhh
Confidence 3444455665544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=19 Score=43.16 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=63.8
Q ss_pred hHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHh--------HHHHHH
Q 000378 849 RGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIAD--------YESILD 920 (1605)
Q Consensus 849 R~~~Aikag~~e~A~s~Lk~e~~R~~d~P~~p~ts~l~~R~r~LGreci~~Gq~~~Ake~fq~~~~--------fe~ll~ 920 (1605)
+..-|...++|+.|++.+...-....+.+ .+|.. +|..+++.|+++.|..+|+++-+ |-.+-.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~------~a~~~---~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNA------ELYAD---RAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH---HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34557778899999988866544444444 66665 88889999999999988887733 333444
Q ss_pred HHHHcCCHH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 000378 921 LFICHLNPS-AMRRLAQRLEEEGANPELRRYCERI 954 (1605)
Q Consensus 921 L~i~~gn~~-aLrrma~~aE~~~~D~elr~~~eRi 954 (1605)
+|.-.|+.+ +++.+.+-++..-+|+++...+.++
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 556667754 5555555555445667776664444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.04 E-value=7.5 Score=45.82 Aligned_cols=142 Identities=8% Similarity=-0.046 Sum_probs=100.9
Q ss_pred cceeeeecCceEEEEeccCCceeeeccCC-cceeeeeecCCCCceEEEEecCCcEEeeccCCC-----ce----------
Q 000378 33 QALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-----QS---------- 96 (1605)
Q Consensus 33 gallA~a~g~~I~l~d~~tG~~~~~l~~~-~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-----q~---------- 96 (1605)
-.+++++-|.+++.++..-|+.-..+-.. -.+.+++||| |+..+++...--.|-++-++++ .+
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 35778899999999998766655542222 3489999999 8889999888888888887774 21
Q ss_pred EEEeCCCccccc-cccCceeEeccCCCcceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCe---EE
Q 000378 97 FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV---LY 172 (1605)
Q Consensus 97 ~v~~sp~~~~~~-~s~d~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~v---L~ 172 (1605)
|+-||......| ++-|+++ . ||. -|.-+ ..|+.-++-|.+++-.|++.-|+|-|+. ++
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~-------~--I~D---VR~~~------tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTC-------A--IYD---VRNMA------TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred eeeeccCcceEEEEecCCcE-------E--EEE---ecccc------cchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 788888888888 5888888 4 477 11222 2355667778899999999999976553 34
Q ss_pred EEecCceEEEEecccceEEEEE
Q 000378 173 VAYADGLIRAYNIHTYAVHYTL 194 (1605)
Q Consensus 173 ~a~~dg~IR~w~i~t~~v~~tL 194 (1605)
+-. =+-+-+-|+-||..+=-+
T Consensus 270 sEh-fs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 270 SEH-FSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred ecC-cceEEEEEcccCceeeEE
Confidence 332 334557788888776433
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=81.04 E-value=2.5 Score=37.52 Aligned_cols=33 Identities=18% Similarity=0.509 Sum_probs=28.9
Q ss_pred ccceeEeecCCceEEEEecCCCeEEeeecCCCC
Q 000378 203 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 203 ~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
..|.+++|+|+.+.||+|+.+|.|.+++++-.|
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 357799999999999999999999999986443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.01 E-value=15 Score=43.97 Aligned_cols=147 Identities=15% Similarity=0.170 Sum_probs=92.5
Q ss_pred CCceeEeCCCcceeee--ecCceEEEEeccCCceeeeccCCc--ceeeeeecCCCCceEEEEecCCcEEeeccCCCceE-
Q 000378 23 QPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDINS--PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF- 97 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~~--~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~- 97 (1605)
-+.++.|+|+-+.|-+ .-..+|+|.+ ++|..++++-+.. ---.|+|.- +|..+++==.|.++...-++...+.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEE
Confidence 4899999999998877 5666888888 8899999944433 336788887 7778777777888887766654321
Q ss_pred EEeCCCccccccccCceeE-------eccCCCcceEEeccccccceeEEeeeecCCCC-------ccccccc----CCCc
Q 000378 98 VLHSPEKKMESISVDTEVH-------LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP-------TKIKTDL----KKPI 159 (1605)
Q Consensus 98 v~~sp~~~~~~~s~d~~ih-------~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~-------~~ik~d~----kkpV 159 (1605)
.+=++ ++ +=+++.| ||-.|..--+|+ .+++++++.++=++.+ ++.+++. =+-|
T Consensus 165 ~~~~~---~i--~L~~~~k~N~GfEGlA~d~~~~~l~~----aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 165 SAKVQ---KI--PLGTTNKKNKGFEGLAWDPVDHRLFV----AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred eccce---EE--eccccCCCCcCceeeecCCCCceEEE----EEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 11111 11 1111111 444443322377 7788888765544443 3344444 5678
Q ss_pred eEeeeecCCCeEEEEec-CceE
Q 000378 160 VNLACHPRLPVLYVAYA-DGLI 180 (1605)
Q Consensus 160 ~~LA~~P~~~vL~~a~~-dg~I 180 (1605)
-+|.|++.-..|.|=|. ++.+
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l 257 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRL 257 (316)
T ss_pred ccceecCCCCcEEEEecCCceE
Confidence 89999966666666553 4444
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.54 E-value=3 Score=49.63 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=107.4
Q ss_pred CCceeEeCCCcceeeeecCceEEEEecc--CCceeee-------ccCCcceeeeeecCCCCceEEEEecCCcEEeeccCC
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTL--TGSRIAS-------IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~--tG~~~~~-------l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~ 93 (1605)
-+++++|..|+..+.+|.+=.|-||... .|+-.-+ -++.--+.+--|+|..-.++---+.-|+||++|+-.
T Consensus 174 hiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 174 HINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred EeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 7789999999999999999999999864 1221111 112223567789998888888888999999999972
Q ss_pred C-------ce---------------------EEEeCCCccccccccC-ceeEeccCCCcceEEeccccccceeEEeeeec
Q 000378 94 E-------QS---------------------FVLHSPEKKMESISVD-TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1605)
Q Consensus 94 ~-------q~---------------------~v~~sp~~~~~~~s~d-~~ih~a~t~~~l~vw~~~~~~~s~~~vgt~eG 144 (1605)
. .+ -+-|||.||+| .|+| -+| +. |. -+|.-.+|-|+-=
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryI-lsRdyltv-------ki--wD---vnm~k~pikTi~~ 320 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYI-LSRDYLTV-------KI--WD---VNMAKNPIKTIPM 320 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEE-EEeccceE-------EE--Ee---cccccCCceeech
Confidence 1 00 68899999999 5777 777 77 77 2345455544433
Q ss_pred CCCCcccccccCCCceEeeeecCCCeEEEEecCceEEEEecccceEEEEEeeccccccccceeEeecCCceEEEEecCCC
Q 000378 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1605)
Q Consensus 145 ~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dg 224 (1605)
|-. |+ --|---|+.--| --.+. +.||-|-..+.+||-..
T Consensus 321 h~~-------l~------------~~l~d~YEnDai----------fdkFe------------isfSgd~~~v~sgsy~N 359 (460)
T COG5170 321 HCD-------LM------------DELNDVYENDAI----------FDKFE------------ISFSGDDKHVLSGSYSN 359 (460)
T ss_pred HHH-------HH------------HHHHhhhhccce----------eeeEE------------EEecCCccccccccccc
Confidence 332 11 011111211111 11222 36777778888888888
Q ss_pred eEEeeecCCCCCeeeee
Q 000378 225 TLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 225 tl~~W~vs~~~~~m~g~ 241 (1605)
..-++++.+.-+.=.|+
T Consensus 360 Nfgiyp~~ssg~~D~g~ 376 (460)
T COG5170 360 NFGIYPTDSSGFKDVGH 376 (460)
T ss_pred ceeeeccccCCCCcceE
Confidence 88888777776666666
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.18 E-value=7.3 Score=47.07 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred cceEEeccccccceeEEeeeecCCCCcccccccCCCceEeeeecCCCeEEEEe--c--------CceEEEEecccceEEE
Q 000378 123 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY--A--------DGLIRAYNIHTYAVHY 192 (1605)
Q Consensus 123 ~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~P~~~vL~~a~--~--------dg~IR~w~i~t~~v~~ 192 (1605)
|..|.. ..+.+.+|.+.++-. -+++.|||+..+|+++ + .-.|.+||.+|-++..
T Consensus 18 rv~viD----~d~~k~lGmi~~g~~------------~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 18 RVYVID----ADSGKLLGMIDTGFL------------GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp EEEEEE----TTTTEEEEEEEEESS------------EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred eEEEEE----CCCCcEEEEeecccC------------CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 556777 678889999888877 5788999999999864 2 3368899999999998
Q ss_pred EEeeccc---cccccceeEeecCCceEEEE
Q 000378 193 TLQLDNT---IKLLGAGAFAFHPTLEWLFV 219 (1605)
Q Consensus 193 tL~~~~~---~~~~g~~a~Af~P~g~~l~~ 219 (1605)
-+.+=+. .....-+.++++.||+|+.|
T Consensus 82 EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 82 EIEIPPKPRAQVVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp EEEETTS-B--BS--GGGEEE-TTSSEEEE
T ss_pred eEecCCcchheecccccceEEccCCcEEEE
Confidence 8777322 12345567888888888764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=80.13 E-value=96 Score=36.18 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=98.0
Q ss_pred eEEEEeccCCceeee--ccCCcceeeeeec--CCC----CceEEEEec----------CCcEEeeccCCC-----ce---
Q 000378 43 YIIEFDTLTGSRIAS--IDINSPVVRMAYS--PTS----GHAVVAILE----------DCTIRSCDFDTE-----QS--- 96 (1605)
Q Consensus 43 ~I~l~d~~tG~~~~~--l~~~~~v~~lA~S--P~~----g~~laa~~~----------D~tI~~wd~~~~-----q~--- 96 (1605)
.|++.|..|...+.+ +...-.|.+|+.- +.+ -+.||+|.. .|.|.+.++... +.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 689999999999988 6666666666655 212 367777764 288999999883 22
Q ss_pred ----------EEEeCCCccccccccCceeEeccCCCcceEEeccccccc-eeEEeeeecCCCCcccccccCCCceEeeee
Q 000378 97 ----------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMS-VTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 97 ----------~v~~sp~~~~~~~s~d~~ih~a~t~~~l~vw~~~~~~~s-~~~vgt~eG~~~~~~ik~d~kkpV~~LA~~ 165 (1605)
++..- .|+ +.++.+.+| ..+=|. ... ...+.....+. .|.+|...
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~g~~l-------~v~~l~----~~~~l~~~~~~~~~~-----------~i~sl~~~ 138 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAVGNKL-------YVYDLD----NSKTLLKKAFYDSPF-----------YITSLSVF 138 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEETTEE-------EEEEEE----TTSSEEEEEEE-BSS-----------SEEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEeecCEE-------EEEEcc----CcccchhhheecceE-----------EEEEEecc
Confidence 22222 333 445555566 332233 122 12221111111 45555554
Q ss_pred cCCCeEEEEecCceEEEEeccc--ceEEEEEeeccccccccceeEeecCCceEEEEecCCCeEEeeecCCC
Q 000378 166 PRLPVLYVAYADGLIRAYNIHT--YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 166 P~~~vL~~a~~dg~IR~w~i~t--~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
+..+++|..-..|-++..+. .+.. -+-.|.. ...+.|..|=+|++.++++|++|.|.+++..++
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~--~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLI-LVARDYQ--PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EE-EEEEESS---BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEE-EEEecCC--CccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 55999998888888775553 2222 3333333 335778888888888889999999999999854
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 320 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-40
Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 15/229 (6%)
Query: 1371 NPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALA----KDHSR 1426
+ + P + + + +A+ F L++ +
Sbjct: 83 WKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQE 142
Query: 1427 GADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHR 1486
A+ + TIC +Y + +++ E R + P + + + ++ + LQ H
Sbjct: 143 IAEAQQLITICREYIVGLSM--ETERKKL---PKETLEQQKRICEMAAYFTHSNLQPVHM 197
Query: 1487 INCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNK---SID 1543
I +RTA+ +++N+ A LL P + + I ++ ++ + D
Sbjct: 198 ILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYD 257
Query: 1544 PLEDPSQFCAATLSRLSTIGYDV-CDLCGAKFSA-LSAPGCIICGMGSI 1590
+P CAA+ + C L GA +S C + + I
Sbjct: 258 M-HNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEI 305
|
| >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Length = 325 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 8e-40
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 23/251 (9%)
Query: 1348 STQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLP 1407
+ P +L A + P VP + G + + N+
Sbjct: 79 PSTPCELPAQLGYVRAYDDTVSEDQILP-------YVPGLDVVNEKMNEGYKNFKLNKPD 131
Query: 1408 DALSCFDEAFLAL----AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAI 1463
A+ CF EA + D +Y + +++ E L++
Sbjct: 132 IAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKE-----GNT 186
Query: 1464 SAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQD 1523
E+A L HR N ++ A+ ++ + +N+ A L + +
Sbjct: 187 VRMLELAAYFTKA---KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243
Query: 1524 E-LRSLIDMCVQRGLSNKSIDPLED-PSQFCAATLSRLSTIGYDV-CDLCGAKF-SALSA 1579
E R + + ID CAAT + V L G+K+
Sbjct: 244 EQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKD 303
Query: 1580 PGCIICGMGSI 1590
I + I
Sbjct: 304 KIDRIAMISKI 314
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 5e-12
Identities = 42/299 (14%), Positives = 90/299 (30%), Gaps = 35/299 (11%)
Query: 7 QHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTY---IIEFDTLTGSRIASIDINSP 63
+ L + +P AAF Q L+A I T + + + ++ S
Sbjct: 4 KIFSLAETNKYGM-SSKPIAAAFDFTQNLLA--IATVTGEVHIYGQQQVEVVIKLEDRSA 60
Query: 64 VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQ 123
+ M + G +V I T+ +++ K+ SI D + L LQ
Sbjct: 61 IKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118
Query: 124 --PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181
++ + R + ++ + + PIV++ +PR + + +
Sbjct: 119 NGSMIVYDIDRDQLSSFK--LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176
Query: 182 AYNIHTYAVHYTLQLDNTIKLLGAG--------------AFAFHPTLEWLFVGDRRGTLL 227
Y++ + + + G +HP + +L+
Sbjct: 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV 236
Query: 228 AWDVSIERPSMIGMDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGE 286
WD + G + + +T N P + I + + E
Sbjct: 237 FWDAN---------SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 5e-10
Identities = 108/776 (13%), Positives = 234/776 (30%), Gaps = 256/776 (32%)
Query: 241 MD---GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPR-ILSQQGGEAVYPLPRVRA 296
MD G Q ++ + I++ NF + ++ D+P+ ILS++ + +
Sbjct: 7 MDFETGEHQ-YQYKDILSVFEDAFVDNF-DCKDVQ--DMPKSILSKEEIDHIIMSK---- 58
Query: 297 LEVHPRLNLAVLLFANF-TGGDNIKNRAAYTREGRKQLFAVLQSA-----RGSSASVLK- 349
++ + LF + + + + + E + + L S R S
Sbjct: 59 ----DAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 350 -EKLSSMGSSG-ILADH---------QLQAQLQEHHLKGHSHLTISDIARKAFLYSHFME 398
E+ + + + A + +L+ L E L+ ++ I +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLI-----------DGVL 159
Query: 399 GHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINL 458
G K+ + + VC + ++ + F+ +NL
Sbjct: 160 GSGKTW------VA-----------LDVCLSYKVQCKMDFK----------IFW---LNL 189
Query: 459 VAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENV 518
C+ +++ L Q+L Y+ + N+
Sbjct: 190 ---KNCNSPETVLEML--------------------QKLL---YQIDPNWTSRSDHSSNI 223
Query: 519 DTQLADSKSSTVKGRDAAFIG--PNEDQFAILDD--DKTGLALY-----ILKGVTLQEAA 569
++ ++ + P E+ +L + + + IL +T +
Sbjct: 224 KLRIHS-----IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTR--- 273
Query: 570 DENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFST---------PIESTLMFACDGD 620
V D + T S+ + EV + P E +
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTN 326
Query: 621 --QIGM-AKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLT 677
++ + A+ ++ A ++ + K + ++ + +L+ A E ++ +
Sbjct: 327 PRRLSIIAESIRDGL--ATWDNWKHVNCD-KLTTIIESSLNVLEPA--EYRKMFD----- 376
Query: 678 TQRVLIVSADLDILASSSTKFDKG--LPSFR-SLLWVGPALLFSTATAISVLGWDGKVRN 734
L + F +P+ SL+W +D +
Sbjct: 377 ---------RLSV-------FPPSAHIPTILLSLIW-----------------FDVIKSD 403
Query: 735 ILSISMPNAVLVGALNDRLLLANPTEINPRQKKG--IEIKSCLVGLLEPLLIGFATMQQY 792
++ + V L+ L+ +Q K I I S + L L
Sbjct: 404 VMVV-------VNKLHKYSLVE-------KQPKESTISIPSIYLELKVKL---------- 439
Query: 793 FEQKLDLSEIL---YQITSRFDSLRITPRSLD--ILAKGPPVCGDLAVSLSQAGP-QFTQ 846
E + L + Y I FDS + P LD + L +
Sbjct: 440 -ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMT 491
Query: 847 VLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQF--DS 904
+ R ++ RF K +R S + + +QL Y + D+
Sbjct: 492 LFRMVFL--DFRFLEQ----K---IRHDSTAWNASGS-ILNTLQQL----KFYKPYICDN 537
Query: 905 AKETFEVIADYESILDLFICHLNPSAMR-------RLAQRLEEEGANPELRRYCER 953
+E + + +ILD F+ + + + R+A E+E E + +R
Sbjct: 538 -DPKYERLVN--AILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-07
Identities = 88/547 (16%), Positives = 153/547 (27%), Gaps = 150/547 (27%)
Query: 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINS 62
+ Q +V R LQP+ QAL+ + ++ + G
Sbjct: 120 YNDNQVFAKYNVSR-----LQPYLKL---RQALLELRPAKNVL----IDG---------- 157
Query: 63 PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKME------SISVDTEVH 116
+ SG VA+ S + + KM+ ++
Sbjct: 158 ----VL---GSGKTWVALD---VCLS-----------YKVQCKMDFKIFWLNLKNCNSPE 196
Query: 117 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP----VL- 171
L LQ ++ + ++ + L VL
Sbjct: 197 TVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 172 YVAYADGLIRAYNIH-----TYAVHYTLQLDNTIKLLGAGAFAFHPTLE---WLFVGDRR 223
V A A+N+ T T T L + A H +L+ D
Sbjct: 252 NVQNAK-AWNAFNLSCKILLT-----TRFKQVTDFL--SAATTTHISLDHHSMTLTPDEV 303
Query: 224 GTLLA-W-DVSIER---------P---SMIG-----MDGSLQVWK-------TRVI---I 254
+LL + D + P S+I + WK T +I +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 255 NPNRPPMQANFFEPASI--ESIDIP-RILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFA 311
N P F+ S+ S IP +LS + + V ++H + +L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPK 422
Query: 312 NFTGG-DNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQL 370
T +I E L + + + L H +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----I 477
Query: 371 QEHHLKGHSHLTISDIARKAFLYSHFME------GHAKSAPISRLPLIT--------IFD 416
HHLK H + R FL F+E A +A S L + I D
Sbjct: 478 G-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 417 SKHQ----LKDIPVCQPFHLELNF-FNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIY 471
+ + + I L+F E ++ Y D L+ L + ++I+
Sbjct: 537 NDPKYERLVNAI---------LDFLPKIEENLICSK----YTD---LLRIALMAEDEAIF 580
Query: 472 RKLYSTI 478
+ + +
Sbjct: 581 EEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-07
Identities = 94/679 (13%), Positives = 184/679 (27%), Gaps = 226/679 (33%)
Query: 6 VQHLDLRHVG---RG-------DHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTL--TGS 53
V + D + V + DH + + GT + F TL
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS------------GTLRL-FWTLLSKQE 76
Query: 54 RIA------SIDINSP--VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV-LHSPEK 104
+ + IN + + + + + R ++ Q F +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRL 134
Query: 105 KMESISVDTEVHLALTPLQP---VVFFGFHRRM-----SVTVVGTVE----GGRAPTKI- 151
+ ++ AL L+P V+ G + + + + KI
Sbjct: 135 QPY-----LKLRQALLELRPAKNVLIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 152 ---------KTDLKKPIVNLACHPRLPVLYVAYADGLIRA-YNIHTYAVH---------Y 192
+ + + L + ++ + + +D IH+ Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKL-LY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 193 T---LQLDN-----TIKLLGAGAFAFH-PTLEWLFVGDRRGTLLAWDVSIERPSMIGMDG 243
L L N AF L + R + D
Sbjct: 244 ENCLLVLLNVQNAKAWN-----AFNLSCKIL----LTTR-------FKQV-------TDF 280
Query: 244 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRL 303
T + ++ + P E + L + LPR L +P
Sbjct: 281 LSAATTTHISLDHHSMT-----LTPD--EVKSL---LLKYLDCRPQDLPR-EVLTTNP-- 327
Query: 304 NLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILAD 363
+ + ++I++ A T + K V +KL+++ S + +
Sbjct: 328 -RRLSII-----AESIRDGLA-TWDNWKH--------------VNCDKLTTIIESSL--N 364
Query: 364 HQLQAQLQEHHLKGHSHLTI----SDIARKAF--LYS--------HFMEG-HAKSAPISR 408
A+ ++ + L++ + I ++ + H S + +
Sbjct: 365 VLEPAEYRKMFDR----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEK 419
Query: 409 LPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGAD 468
P +S + I +LEL LH + VD YN+
Sbjct: 420 QP----KESTISIPSI------YLELKVKLENEYALHRSI----VD-----HYNIPKT-- 458
Query: 469 SIYRKLYSTIPGTVEYYPKHMVY-------SKRQQLFLVVY---EF-------SGTTNEV 511
+ P +Y+ H+ + +R LF +V+ F T
Sbjct: 459 --FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 512 VLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDD------KTGLALYILKGVTL 565
N QL K +I N+ ++ L + K L K L
Sbjct: 517 SGSILNTLQQLKFYKP---------YICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 566 QEAA--DENNGVVD--HNQ 580
A E+ + + H Q
Sbjct: 568 LRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 63/470 (13%), Positives = 129/470 (27%), Gaps = 125/470 (26%)
Query: 572 NNGVVDHNQST---DTNVGSVQGPLQLMFES-EVDRIFSTPIESTLMFACDGDQIGMAKL 627
++ + + + VQ + + E+D I + +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK----------------DAV 61
Query: 628 VQGYRLSARAGHYLQTKSEGKKSIKLKVTEVM------LKVAWQETQRGYVAGVLTTQRV 681
RL + S+ ++ ++ V EV+ L + QR +
Sbjct: 62 SGTLRL------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMT 109
Query: 682 LIVSADLDILASSSTKFDKG-LPSFRSLLWVGPALL-FSTATAISVLGWDGKVRNILSIS 739
+ D L + + F K + + L + ALL A + + G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG------------ 157
Query: 740 MPNA---VLVG-ALND-RLLLANPTEI---NPRQKKGIEIKSCLVGLLEPLLIGFATMQQ 791
+ + + ++ +I N + E +LE L +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE------TVLEMLQKLLYQIDP 211
Query: 792 YFEQKLDLS-------EILYQITSRFDSLRITPRSLDILA--KGPPV-------C----- 830
+ + D S + R + L +L + C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 831 -GDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL--RSRDYPK--C---PPT 882
V+ T + + L S+L ++L R +D P+ P
Sbjct: 272 TRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRR 329
Query: 883 SQLFHRFRQLGYACIK-YGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLE-- 939
+ + G A + + K +I++ + L P+ R++ RL
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDK--------LTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 940 EEGAN-PELRRYCERILRVRSTGWTQG-------IFANFAAESMVPKGPE 981
A+ P + S W + S+V K P+
Sbjct: 382 PPSAHIPT---------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-04
Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 39/191 (20%)
Query: 1389 AASVCFKTGLAHLEQNQLPDALSCFDEAF-LALAKDHSRGADVKAQATICAQYKIAVTLL 1447
A VC L++ Q ++ + F L L +S ++ + Y+I
Sbjct: 167 ALDVC----LSYKVQCKMDF------KIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWT 214
Query: 1448 QEILRLQKVQGPSAAISAKDEMARL---SRHLGSLPL-----QTKHRIN-----CIRTAI 1494
+ S + E+ RL + L L Q N C + +
Sbjct: 215 SRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSC-KILL 270
Query: 1495 -KRNMEVQNYAYAKQMLELLLSKAPAS-KQDELRSLIDMCVQRGLSNKSIDPLEDPSQFC 1552
R +V ++ A + L + DE++SL+ + P + P +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVL 323
Query: 1553 AATLSRLSTIG 1563
RLS I
Sbjct: 324 TTNPRRLSIIA 334
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 2/110 (1%)
Query: 1284 APNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPA 1343
A Q A P +PPQ + +G+P G P Q + L
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 1344 QVPPSTQPLDLSALGVPNSGD--SGKSPANPASPPTSVRPGQVPRGAAAS 1391
Q+ +T ++ L D + P P T ++ Q P A A
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-05
Identities = 27/179 (15%), Positives = 42/179 (23%), Gaps = 13/179 (7%)
Query: 1238 AQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGL 1297
Q Q + QN P Q A +PP + G P Q P+
Sbjct: 10 PQAQL---QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMG------MPPQGAVPSMGQQQ 60
Query: 1298 PDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSAL 1357
Q+ Q S + P Y +P Q+ Q +
Sbjct: 61 FLTPAQEQLHQQIDQATTS---MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ-QPM 116
Query: 1358 GVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEA 1416
P G + P + P + + T L + +
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 26/185 (14%), Positives = 46/185 (24%), Gaps = 15/185 (8%)
Query: 1205 APASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPP 1264
+ QPA P ++ + GQ +P S+
Sbjct: 8 VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQM--------GMPPQGAVPSMGQQ 59
Query: 1265 GTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGV 1324
+Q+ Q + + N + P+ + PQ+ Q P++ P +
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP---M 116
Query: 1325 PPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQV 1384
+ GQ + P L +P P P P
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYPIDLLT----ELPPPITDLTLPPPPLVIPPERMLVPS 172
Query: 1385 PRGAA 1389
A
Sbjct: 173 ELSNA 177
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 23/132 (17%), Positives = 34/132 (25%), Gaps = 3/132 (2%)
Query: 1260 SLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGL 1319
S Y Q Q A+ P Q P + G Q+ P V S+G
Sbjct: 2 SHHKKRVYPQAQLQYGQN-ATPLQQPAQFMPPQDPA--AAGMSYGQMGMPPQGAVPSMGQ 58
Query: 1320 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1379
P Q + + + +D +A P +P P +
Sbjct: 59 QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Query: 1380 RPGQVPRGAAAS 1391
P A
Sbjct: 119 PAYGQPSAAMGQ 130
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 44/225 (19%), Positives = 74/225 (32%), Gaps = 40/225 (17%)
Query: 23 QPHEAAFHPNQALIAVAIGT--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80
P A P+ + VA + DT T + IA++ S +A SP V
Sbjct: 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTN 92
Query: 81 LEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEV-HLALTP--LQPVVFFGFHRRMSV- 136
+ T+ D + ++ LAL+P + V + +SV
Sbjct: 93 MASSTLSVIDTTS---------NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143
Query: 137 -----TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YADGLIRAYNIHTYAV 190
V+ TV GR+P +A P +YVA + I + T +V
Sbjct: 144 NTVTKAVINTVSVGRSPK-----------GIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192
Query: 191 HYTLQLDNTIKLLGAGAFAFHPTLEWLFV---GDRRGTLLAWDVS 232
T++++ A +P +V T+ D
Sbjct: 193 IDTVKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 26/218 (11%), Positives = 61/218 (27%), Gaps = 31/218 (14%)
Query: 31 PNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90
+ + + + F T + + MAYS +A + +
Sbjct: 10 RLRGSLLLGSLLVVSSFSTQAAEEMLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGG 69
Query: 91 ----FDTEQSFVLHSPEKKMESISVDTEVH-LALTPLQPVVFFG--FHRRMSV------T 137
D + ++I D + + ++FG + ++
Sbjct: 70 VVYRLDPVT-------LEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE 122
Query: 138 VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA--YADGLIRAYNIHTYAVHYTLQ 195
V G + + +P L +Y++ + +I + ++
Sbjct: 123 VKGRLVLDDRKRTEEVRPLQPRE-LVADDATNTVYISGIGKESVIWVVDGG------NIK 175
Query: 196 LDNTIKLLGAG--AFAFHPTLEWLFVGDRRGTLLAWDV 231
L I+ G A + L+ + G L+ D
Sbjct: 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT 213
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1605 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.1 bits (110), Expect = 1e-05
Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 11/200 (5%)
Query: 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSP 102
+ +D TG ++ I V +A SP G + A D +R D +T
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245
Query: 103 EKKMESISVDTEVHLALTPLQPVVFFG---------FHRRMSVTVVGTVEGGRAPTKIKT 153
E + + D+ + T V G + +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFH 211
K ++++A + D + ++ + LQ ++ I + A +
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365
Query: 212 PTLEWLFVGDRRGTLLAWDV 231
P G W
Sbjct: 366 PEYNVFATGSGDCKARIWKY 385
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (106), Expect = 3e-05
Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 16/191 (8%)
Query: 51 TGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVLHSPEKKMESI 109
TG + + + VRM G + + D T+R T++ L +E I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 110 SVDTE-VHLALTPLQPVVFFGFHRRMSVTVVGTVEG--------GRAPTKIKTDLKKPIV 160
S E + +++ + + G+ + +
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251
Query: 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFV 219
+ H + D +R ++ TL ++ + + FH T ++
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT-----SLDFHKTAPYVVT 306
Query: 220 GDRRGTLLAWD 230
G T+ W+
Sbjct: 307 GSVDQTVKVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 8e-05
Identities = 18/168 (10%), Positives = 37/168 (22%), Gaps = 16/168 (9%)
Query: 65 VRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVLHSPEKKMESISVDTEVHLALTPLQ 123
V V+ D + + D E + +I + T
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--- 243
Query: 124 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAY 183
+ + T ++ I +++ +L Y D +
Sbjct: 244 ------GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 184 NIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230
+ L DN + + G L W+
Sbjct: 298 DALKADRAGVLAGHDNRVS-----CLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.3 bits (100), Expect = 2e-04
Identities = 26/247 (10%), Positives = 68/247 (27%), Gaps = 17/247 (6%)
Query: 2 EWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGT-------------YIIEFD 48
+ T + L + + + AA P+ +A+ + +D
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 49 TLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMES 108
T SR + + + +A++ + + + + S E + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168
V + + R + + + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 169 PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG----AFAFHPTLEWLFVGDRRG 224
A RA+ + + L+ + +IK + + +++G G
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 225 TLLAWDV 231
L A+D
Sbjct: 302 DLAAYDA 308
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 0.001
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 162 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 221
L D L+ A+ A + + +++ + +++ G
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL-----SCDISVDDKYIVTGS 325
Query: 222 RRGTLLAWDV 231
++V
Sbjct: 326 GDKKATVYEV 335
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.7 bits (88), Expect = 0.004
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 163 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 222
P + A AD I+ +N+ T V T+ + I+ T + L
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE---DQQLGIIWTKQALVSISA 301
Query: 223 RGTLLAWD 230
G + +
Sbjct: 302 NGFINFVN 309
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1605 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.9 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.9 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.9 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.9 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.9 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.9 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.89 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.87 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.87 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.86 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.83 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.82 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.81 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.81 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.78 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.77 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.77 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.76 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.75 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.72 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.71 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.71 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.66 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.66 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.65 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.65 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.64 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.62 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.62 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.6 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.6 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.52 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.49 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.35 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.34 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.29 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.29 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.19 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.18 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.17 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.14 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.03 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.79 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.73 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.71 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.66 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.57 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.46 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.29 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.05 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.77 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.46 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.34 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.25 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.06 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.81 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.74 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.27 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 95.78 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.98 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 94.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 89.3 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 87.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 85.52 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=9.4e-22 Score=182.16 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=156.4
Q ss_pred CCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCE-----
Q ss_conf 98145747896456664391599983667862520-158955024321589996589973598087430688842-----
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----- 96 (1605)
.+.+++++|+|..||.+-|..|.+||+.++....+ .+|...|..++||| +|+.||++..|++|++||+.+...
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~ 97 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTT 97 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred CEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEEEC-CCCEEECCCCCCEEEEEEEECCCCCCCCC
T ss_conf 75999996998999999699999999999966179747888889999948-99967225567367466310111100001
Q ss_pred ---------EEEECCCCCCCCC-CCC--CEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf ---------8973798552111-258--6167124787531781223344201876430589985334445788227643
Q 000378 97 ---------FVLHSPEKKMESI-SVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1605)
Q Consensus 97 ---------~v~~sp~~~~~~~-s~d--~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~ 164 (1605)
++.|+|+++.+.. +.+ ..+ + ||. ..+.+.+.++++|.. +|.+++|
T Consensus 98 ~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~-------~--v~~----~~~~~~~~~l~~h~~----------~v~~v~~ 154 (311)
T d1nr0a1 98 IPVFSGPVKDISWDSESKRIAAVGEGRERFG-------H--VFL----FDTGTSNGNLTGQAR----------AMNSVDF 154 (311)
T ss_dssp EECSSSCEEEEEECTTSCEEEEEECCSSCSE-------E--EEE----TTTCCBCBCCCCCSS----------CEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------C--CCC----CCCCCCCCCCCCCCC----------CCCCCCC
T ss_conf 3433575433233311100011112211111-------1--111----111111111111111----------1111111
Q ss_pred ECCCCE-EEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 169876-9998148628987313431999885224222233024765278308998658990996325899980
Q 000378 165 HPRLPV-LYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS 237 (1605)
Q Consensus 165 ~P~~~v-L~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~ 237 (1605)
+|+++. |++++.|+.|++|++.++....++.. |...+.+++|+|++..+++|+.||++.+|+....+..
T Consensus 155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~----~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224 (311)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 211101200011221111111111111111111----1111111234764221211111111100012446411
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=6.4e-21 Score=175.69 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=158.2
Q ss_pred CCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 112213-589999999814574789645666-4391599983667862520-1589550243215899965899735980
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
+..|++ ||.+ .|.|++|||++.+||+ +.|..|++||..+|..+.+ ..|..+|..++|+| +|..++++..|++
T Consensus 46 ~~~~tL~GH~~----~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~ 120 (340)
T d1tbga_ 46 RTRRTLRGHLA----KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNI 120 (340)
T ss_dssp CEEEEECCCSS----CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCC
T ss_pred EEEEEECCCCC----CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEC-CCEEEEEECCCCE
T ss_conf 65279888789----888999989999999997899555631021025799724653377567601-2114431013320
Q ss_pred EEEECCCCCCE---------------------------------------------------------EEEECCCCCCCC
Q ss_conf 87430688842---------------------------------------------------------897379855211
Q 000378 86 IRSCDFDTEQS---------------------------------------------------------FVLHSPEKKMES 108 (1605)
Q Consensus 86 I~~wd~~~~q~---------------------------------------------------------~v~~sp~~~~~~ 108 (1605)
|+.|+...... +..+.+......
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred EECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE
T ss_conf 10133222212221110013542110111111111111112445432001232211111233101576300124421268
Q ss_pred -CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf -1258616712478753178122334420187643058998533444578822764316987699981486289873134
Q 000378 109 -ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT 187 (1605)
Q Consensus 109 -~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t 187 (1605)
++.|++| +. |+ ..+...+.++.+|.. +|.+++++|++..|++++.||.|++|++.+
T Consensus 201 ~~~~d~~v-------~i--~d----~~~~~~~~~~~~h~~----------~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~ 257 (340)
T d1tbga_ 201 SGACDASA-------KL--WD----VREGMCRQTFTGHES----------DINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EEETTTEE-------EE--EE----TTTTEEEEEECCCSS----------CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEECCCEE-------EE--EE----CCCCCEEEEEECCCC----------CEEEEEECCCCCEEEEEECCCEEEEEEECC
T ss_conf 76057369-------99--99----999948899957889----------858999979989999996999699975212
Q ss_pred CEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 319998852242222330247652783089986589909963258999
Q 000378 188 YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 188 ~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
.....++.. ..+..++.+++|+|++.+|++|+.||+|++|++....
T Consensus 258 ~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 258 DQELMTYSH--DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp TEEEEEECC--TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred CCCCCCCCC--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf 211111112--2445745899998999999999797989999999993
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.6e-21 Score=180.44 Aligned_cols=202 Identities=19% Similarity=0.225 Sum_probs=162.5
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEE
Q ss_conf 4333122112213-589999999814574789645666-4391599983667862520-158955024321589996589
Q 000378 2 EWATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVV 78 (1605)
Q Consensus 2 ~W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~la 78 (1605)
+|--.- -+...+ ||.+ .|.|++|||++.+||+ +.|..|++||..+|..+.+ .+|..+|..++++| ++..++
T Consensus 2 ~w~p~~-~~~~~L~GH~~----~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~ 75 (317)
T d1vyhc1 2 EWIPRP-PEKYALSGHRS----PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLA 75 (317)
T ss_dssp CCCCCS-SCSCEEECCSS----CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEE
T ss_pred CCCCCC-CCCEEECCCCC----CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEC-CCCCCC
T ss_conf 368989-84489858888----768999938989999993899299998999979999957888677776301-111011
Q ss_pred EEECCCCEEEECCCCCCE------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECC
Q ss_conf 973598087430688842------------897379855211-1258616712478753178122334420187643058
Q 000378 79 AILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
....+.++..|+....+. ++.++|++..+. .+.|+.+ +. |. ..+...+.++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~--~~----~~~~~~~~~~~~~ 142 (317)
T d1vyhc1 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI-------KM--WE----VQTGYCVKTFTGH 142 (317)
T ss_dssp EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE-------EE--EE----TTTCCEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCE-------EE--EE----CCCCEEEEEECCC
T ss_conf 11111110111001111111100000000000016998557765267523-------57--51----1443034687167
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCE----------
Q ss_conf 9985334445788227643169876999814862898731343199988522422223302476527830----------
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE---------- 215 (1605)
Q Consensus 146 ~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~---------- 215 (1605)
.. .+.+++++|++..|++++.|+.|+.|++.+....+++.. |...+.+++|+|+..
T Consensus 143 ~~----------~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~ 208 (317)
T d1vyhc1 143 RE----------WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE----HRHVVECISWAPESSYSSISEATGS 208 (317)
T ss_dssp SS----------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred CC----------CCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEEEEC----CCCCCEEEEEEECCCCCEEECCCCC
T ss_conf 77----------630000166799999992798299975125403478824----7787337998632564111034563
Q ss_pred ----------EEEEECCCCEEEEEECCCCCC
Q ss_conf ----------899865899099632589998
Q 000378 216 ----------WLFVGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 216 ----------~l~~G~~dgtl~~W~vs~~~~ 236 (1605)
.+++|+.||++++|++...++
T Consensus 209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 239 (317)
T d1vyhc1 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239 (317)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEECCCCCEEEEEECCCCCE
T ss_conf 0343025886147516997899988899968
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.90 E-value=1.9e-21 Score=179.83 Aligned_cols=205 Identities=17% Similarity=0.104 Sum_probs=173.6
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE---CCCCCCEEEEEECCCCCCEE
Q ss_conf 333122112213-589999999814574789645666-4391599983667862520---15895502432158999658
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~l 77 (1605)
|++.+....+.+ +|.. .|.|++|||+|.+||+ +.|..|++||..++..+.. -.+..+|..|+|+| ++..+
T Consensus 43 ~~~~~~~~~~~~~~H~~----~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l 117 (311)
T d1nr0a1 43 VPVGSLTDTEIYTEHSH----QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRI 117 (311)
T ss_dssp EETTCSSCCEEECCCSS----CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEE
T ss_pred EECCCCCEEEEECCCCC----CEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 99999966179747888----88999994899967225567367466310111100001343357543323331-11000
Q ss_pred EEEECC--CCEEEECCCCCCE------------EEEECCCCCC-CC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEE
Q ss_conf 997359--8087430688842------------8973798552-11-125861671247875317812233442018764
Q 000378 78 VAILED--CTIRSCDFDTEQS------------FVLHSPEKKM-ES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT 141 (1605)
Q Consensus 78 aa~~~D--~tI~~wd~~~~q~------------~v~~sp~~~~-~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt 141 (1605)
+++..| ..++.||+++.+. ++.|+|+++. +. ++.|++| +. |. ..+.+.+.+
T Consensus 118 ~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i-------~i--~d----~~~~~~~~~ 184 (311)
T d1nr0a1 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV-------AI--FE----GPPFKFKST 184 (311)
T ss_dssp EEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE-------EE--EE----TTTBEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-------CC--CC----CCCCCCCCC
T ss_conf 111122111111111111111111111111111111121110120001122111-------11--11----111111111
Q ss_pred EECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCC---CCCCCCEEEEECCCCEEEE
Q ss_conf 3058998533444578822764316987699981486289873134319998852242---2223302476527830899
Q 000378 142 VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNT---IKLLGAGAFAFHPTLEWLF 218 (1605)
Q Consensus 142 ~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~---~~~~g~~a~Af~P~g~~l~ 218 (1605)
+++|.. +|.+++++|++..|++++.|+.|++|+..++....+++.... -|...+.+++|+|++++|+
T Consensus 185 ~~~~~~----------~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~ 254 (311)
T d1nr0a1 185 FGEHTK----------FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254 (311)
T ss_dssp ECCCSS----------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 111111----------1111234764221211111111100012446411222111111100246532102478899999
Q ss_pred EECCCCEEEEEECCCCC
Q ss_conf 86589909963258999
Q 000378 219 VGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 219 ~G~~dgtl~~W~vs~~~ 235 (1605)
+|+.||+|++|++.+.+
T Consensus 255 tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 255 SASADKTIKIWNVATLK 271 (311)
T ss_dssp EEETTSEEEEEETTTTE
T ss_pred EEECCCEEEEEECCCCC
T ss_conf 99379969999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.2e-20 Score=173.68 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=142.8
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEEC-------------------CCCCCEEEEEECCCCC
Q ss_conf 358999999981457478964566643915999836678625201-------------------5895502432158999
Q 000378 14 VGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASI-------------------DINSPVVRMAYSPTSG 74 (1605)
Q Consensus 14 ~g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l-------------------~~~~~v~~lA~SP~~g 74 (1605)
++|.. .|.|++|||||.+||++.|..|++||..+|..+..+ .+...|.+++||| +|
T Consensus 59 ~~H~~----~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~ 133 (388)
T d1erja_ 59 LDHTS----VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DG 133 (388)
T ss_dssp EECSS----CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TS
T ss_pred CCCCC----CEEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CC
T ss_conf 79999----68999999999999999499489998136405766316654432443211101467789889999889-99
Q ss_pred CEEEEEECCCCEEEECCCCCCE------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEE
Q ss_conf 6589973598087430688842------------897379855211-125861671247875317812233442018764
Q 000378 75 HAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT 141 (1605)
Q Consensus 75 ~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt 141 (1605)
..|++++.|++|+.||..+.+. ++.+++++..+. ++.++.+ +. |+ ..+...+..
T Consensus 134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i-------~~--~d----~~~~~~~~~ 200 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV-------RI--WD----LRTGQCSLT 200 (388)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE-------EE--EE----TTTTEEEEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-------EE--EE----CCCCCCCCC
T ss_conf 801213444111121111111111111111111110111111111122210156-------54--10----111111000
Q ss_pred EECCCCCCCCCCCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEECCCCEEEEEEEEC---CCCCCCCCEEEEECCCCEEE
Q ss_conf 305899853344457882276431-69876999814862898731343199988522---42222330247652783089
Q 000378 142 VEGGRAPTKIKTDLKKPIVNLACH-PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLD---NTIKLLGAGAFAFHPTLEWL 217 (1605)
Q Consensus 142 ~eG~~~~~~ik~dlkkpV~~LA~~-P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~---~~~~~~g~~a~Af~P~g~~l 217 (1605)
...+. ...+++++ +++..|++++.||.|+.|++.++....++... .+.|...+.+++|+|++.+|
T Consensus 201 ~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 269 (388)
T d1erja_ 201 LSIED-----------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269 (388)
T ss_dssp EECSS-----------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred CCCCC-----------CCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf 01245-----------4421123688787589973898199963455730001024433345778987899997999999
Q ss_pred EEECCCCEEEEEECCCC
Q ss_conf 98658990996325899
Q 000378 218 FVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 218 ~~G~~dgtl~~W~vs~~ 234 (1605)
++|+.||++++|++...
T Consensus 270 ~s~~~d~~i~iwd~~~~ 286 (388)
T d1erja_ 270 VSGSLDRSVKLWNLQNA 286 (388)
T ss_dssp EEEETTSEEEEEEC---
T ss_pred EEEECCCCEEEEECCCC
T ss_conf 99978992898751577
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=6.5e-21 Score=175.61 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=156.5
Q ss_pred CCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEE--EE-CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCC---
Q ss_conf 9814574789645666-43915999836678625--20-15895502432158999658997359808743068884---
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRI--AS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ--- 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~--~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q--- 95 (1605)
++.|+||||||.+||+ +.+..|.+||..++... .. -+|..+|.+|+||| ++..|+++..|++|+.||+.+.+
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEECCCCCCC
T ss_conf 83899998999999999488989999888997899999558899888999979-99999999799939998620332110
Q ss_pred -----------EEEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf -----------2897379855211-1258616712478753178122334420187643058998533444578822764
Q 000378 96 -----------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLA 163 (1605)
Q Consensus 96 -----------~~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA 163 (1605)
+++.|+|+++.++ ++.|+++ +.|.|.. ............+|+. .|.+++
T Consensus 88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i-------~i~~~~~--~~~~~~~~~~~~~~~~----------~v~~v~ 148 (371)
T d1k8kc_ 88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVI-------SICYFEQ--ENDWWVCKHIKKPIRS----------TVLSLD 148 (371)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETTSSE-------EEEEEET--TTTEEEEEEECTTCCS----------CEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-------EEEEEEC--CCCCCCCCCCCCCCCC----------CCCCCC
T ss_conf 01223221100011111112110000025763-------0254420--3343311100101112----------221111
Q ss_pred EECCCCEEEEEECCCEEEEEECCCC------------------EEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCE
Q ss_conf 3169876999814862898731343------------------1999885224222233024765278308998658990
Q 000378 164 CHPRLPVLYVAYADGLIRAYNIHTY------------------AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1605)
Q Consensus 164 ~~P~~~vL~~a~~dg~IR~w~i~t~------------------~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgt 225 (1605)
+||++..|++|+.|+.||+|++... ...++... |...+.+++|+|+++.|++|+.||+
T Consensus 149 ~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~s~~~d~~ 224 (371)
T d1k8kc_ 149 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----SCGWVHGVCFSANGSRVAWVSHDST 224 (371)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----CSSCEEEEEECSSSSEEEEEETTTE
T ss_pred CCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCC----CCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 111111100013476799984015764310012211111111011244047----6674789875123321000014786
Q ss_pred EEEEECCCCCC
Q ss_conf 99632589998
Q 000378 226 LLAWDVSIERP 236 (1605)
Q Consensus 226 l~~W~vs~~~~ 236 (1605)
|++|++...+.
T Consensus 225 i~iwd~~~~~~ 235 (371)
T d1k8kc_ 225 VCLADADKKMA 235 (371)
T ss_dssp EEEEEGGGTTE
T ss_pred CEEEEEECCCC
T ss_conf 05886410121
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.90 E-value=8.3e-21 Score=174.77 Aligned_cols=187 Identities=10% Similarity=0.043 Sum_probs=141.4
Q ss_pred CCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE--CCCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 12213-589999999814574789645666-4391599983667862520--1589550243215899965899735980
Q 000378 10 DLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 10 ~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
..+.+ ||.. .|.|++||||+.+||+ +.|..|++||+.+|..+.+ -.|...|.+++|+| +|+ +++...|++
T Consensus 4 ~~~~~~GH~~----~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~ 77 (299)
T d1nr0a2 4 IDQVRYGHNK----AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDH 77 (299)
T ss_dssp EEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTE
T ss_pred CCEECCCCCC----CCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEC-CCE-EECCCCEEE
T ss_conf 1368488887----8289999799999999908992999999999688998378877489988403-311-210231026
Q ss_pred EEEECCCCCC---------------EEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCC
Q ss_conf 8743068884---------------2897379855211125861671247875317812233442018764305899853
Q 000378 86 IRSCDFDTEQ---------------SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1605)
Q Consensus 86 I~~wd~~~~q---------------~~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ 150 (1605)
|+.|+..... .+++++|+++.+..+.+..+ +. |. .... ....
T Consensus 78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i-------~~--~~----~~~~--~~~~-------- 134 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI-------AI--YS----HGKL--TEVP-------- 134 (299)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE-------EE--EE----TTEE--EEEE--------
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CC--CC----CCCC--CCCC--------
T ss_conf 887316776201110001111344321001122111112222222-------11--11----1111--1101--------
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEE-EEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 344457882276431698769998148628987313431999-8852242222330247652783089986589909963
Q 000378 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY-TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 229 (1605)
Q Consensus 151 ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~-tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W 229 (1605)
....+.+++++|++..|++++.||.|++|++.+..... .... |...+.+++|+|+++++++|+.||++++|
T Consensus 135 ----~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~~ 206 (299)
T d1nr0a2 135 ----ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV----HPAEITSVAFSNNGAFLVATDQSRKVIPY 206 (299)
T ss_dssp ----CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ----1112332211111111111111111111111111111111111----11111111111111111111111111111
Q ss_pred ECCC
Q ss_conf 2589
Q 000378 230 DVSI 233 (1605)
Q Consensus 230 ~vs~ 233 (1605)
++..
T Consensus 207 ~~~~ 210 (299)
T d1nr0a2 207 SVAN 210 (299)
T ss_dssp EGGG
T ss_pred CCCC
T ss_conf 1111
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.6e-20 Score=172.46 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=164.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEE------CCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 1122135899999998145747896456664391599983667862520------1589550243215899965899735
Q 000378 9 LDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS------IDINSPVVRMAYSPTSGHAVVAILE 82 (1605)
Q Consensus 9 ~~l~~~g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~------l~~~~~v~~lA~SP~~g~~laa~~~ 82 (1605)
+.++.++|+. .|.|++|||+|++||++.+..|++||..++..... .+|..+|.+++||| +|..|++++.
T Consensus 43 ~~~~~~~H~~----~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~ 117 (337)
T d1gxra_ 43 RQINTLNHGE----VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGE 117 (337)
T ss_dssp EEEEEECCSS----CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEES
T ss_pred EEEEECCCCC----CEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECC-CCCEEEEEEC
T ss_conf 4999879999----2899999899999999979988997736776331168764048899689999867-9988988612
Q ss_pred CCCEEEECCCCCCE--------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCC
Q ss_conf 98087430688842--------------897379855211-125861671247875317812233442018764305899
Q 000378 83 DCTIRSCDFDTEQS--------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1605)
Q Consensus 83 D~tI~~wd~~~~q~--------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~ 147 (1605)
|++|++||+..... ++.++|++..+. ++.|..+ +. |. ..+........+|..
T Consensus 118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i-------~~--~~----~~~~~~~~~~~~~~~ 184 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI-------AV--WD----LHNQTLVRQFQGHTD 184 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE-------EE--EE----TTTTEEEEEECCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CC--CC----CCCCCCCCCCCCCCC
T ss_conf 332111111111111111111111111111111111111111111111-------11--11----111111111111111
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEE
Q ss_conf 85334445788227643169876999814862898731343199988522422223302476527830899865899099
Q 000378 148 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 148 ~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~ 227 (1605)
+|.+++++|++..+++++.|+.|++||+.++....++. |...+.+++|+|+++++++|+.||.++
T Consensus 185 ----------~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~~d~~i~ 249 (337)
T d1gxra_ 185 ----------GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-----FTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp ----------CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-----CCCCEEEEEECCCCCCCCEECCCCCCC
T ss_conf ----------11101234443211223566553211111100000246-----666157999715303000000256421
Q ss_pred EEECCCCC
Q ss_conf 63258999
Q 000378 228 AWDVSIER 235 (1605)
Q Consensus 228 ~W~vs~~~ 235 (1605)
+|++....
T Consensus 250 i~d~~~~~ 257 (337)
T d1gxra_ 250 VLHVNKPD 257 (337)
T ss_dssp EEETTSSC
T ss_pred CCCCCCCC
T ss_conf 11111111
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=7.4e-20 Score=167.36 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=101.5
Q ss_pred CEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCC-----------------EEEEECCCCCCCC-CCCCCE
Q ss_conf 6252015895502432158999658997359808743068884-----------------2897379855211-125861
Q 000378 53 SRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ-----------------SFVLHSPEKKMES-ISVDTE 114 (1605)
Q Consensus 53 ~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q-----------------~~v~~sp~~~~~~-~s~d~~ 114 (1605)
+.+.++.|..+|..++||| +|..|+.+. |++|+.||+.... .+++|+|+++.++ ++.|++
T Consensus 43 ~~~~~~~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred EEEEECCCCCCEEEEEECC-CCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 4999879999289999989-999999997-99889977367763311687640488996899998679988988612332
Q ss_pred EEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 67124787531781223344201876430589985334445788227643169876999814862898731343199988
Q 000378 115 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL 194 (1605)
Q Consensus 115 vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL 194 (1605)
| ++ |+- ...+.....++.+|.. +|..++++|++..|++++.|+.|+.|++.++......
T Consensus 121 i-------~i--wd~--~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~ 179 (337)
T d1gxra_ 121 L-------SI--WDL--AAPTPRIKAELTSSAP----------ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp E-------EE--EEC--CCC--EEEEEEECSSS----------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred C-------CC--CCC--CCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1-------11--111--1111111111111111----------1111111111111111111111111111111111111
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 5224222233024765278308998658990996325899
Q 000378 195 QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 195 ~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
.. |...+.+++|+|++..+++|+.||++++|++.+.
T Consensus 180 ~~----~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~ 215 (337)
T d1gxra_ 180 QG----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp CC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11----1111110123444321122356655321111110
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.87 E-value=4.3e-20 Score=169.22 Aligned_cols=203 Identities=10% Similarity=0.080 Sum_probs=165.8
Q ss_pred CCCCCC--CCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE---CCCCCCEEEEEECCCCCC
Q ss_conf 333122--112213-589999999814574789645666-4391599983667862520---158955024321589996
Q 000378 3 WATVQH--LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGH 75 (1605)
Q Consensus 3 W~~~~~--~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~ 75 (1605)
|.+... ..+..+ ||.+ .|.+++|+|++.+||+ +.|..|++||..++..... .++..+|..++|+| ++.
T Consensus 34 w~~~~~~~~~~~~l~gH~~----~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~ 108 (371)
T d1k8kc_ 34 YEKSGNKWVQVHELKEHNG----QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEK 108 (371)
T ss_dssp EEEETTEEEEEEEEECCSS----CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSS
T ss_pred EECCCCCEEEEEEECCCCC----CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 9888997899999558899----88899997999999999799939998620332110012232211000111111-121
Q ss_pred EEEEEECCCCEEEECCCCCC----------------EEEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCC----
Q ss_conf 58997359808743068884----------------2897379855211-12586167124787531781223344----
Q 000378 76 AVVAILEDCTIRSCDFDTEQ----------------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRM---- 134 (1605)
Q Consensus 76 ~laa~~~D~tI~~wd~~~~q----------------~~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~---- 134 (1605)
.+++++.|++|+.|+++... ++++|+|+++.++ +|.|+++ +. |...-+..
T Consensus 109 ~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v-------~v--~~~~~~~~~~~~ 179 (371)
T d1k8kc_ 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC-------RI--FSAYIKEVEERP 179 (371)
T ss_dssp EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE-------EE--EECCCTTTSCCC
T ss_pred CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE-------EE--EEECCCCCCCCC
T ss_conf 100000257630254420334331110010111222111111111110001347679-------99--840157643100
Q ss_pred ----------CEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf ----------2018764305899853344457882276431698769998148628987313431999885224222233
Q 000378 135 ----------SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204 (1605)
Q Consensus 135 ----------s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g 204 (1605)
....+-+..+|.. .|.+++|+|++..|++++.|+.|++||+.++....++.. |...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~ 245 (371)
T d1k8kc_ 180 APTPWGSKMPFGELMFESSSSCG----------WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS----ETLP 245 (371)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSS----------CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC----SSCC
T ss_pred CCCCCCCCCCCEEEEEECCCCCC----------CEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEC----CCCC
T ss_conf 12211111111011244047667----------478987512332100001478605886410121000001----4665
Q ss_pred CEEEEECCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 024765278308998658990996325899
Q 000378 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 205 ~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
+.+++|+|+++++++|. |+.+.+|.....
T Consensus 246 v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 246 LLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp EEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred CEEEEECCCCCEEEEEC-CCCEEEEEEECC
T ss_conf 20365469997999981-992678776089
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=2.2e-19 Score=163.61 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=119.4
Q ss_pred CCCCCCEEEECC--CCCEEEEECCCEEEEEECCCCCEEEE-----CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCC
Q ss_conf 999981457478--96456664391599983667862520-----15895502432158999658997359808743068
Q 000378 20 KPLQPHEAAFHP--NQALIAVAIGTYIIEFDTLTGSRIAS-----IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 20 ~~~~v~~~aF~P--~gallA~a~g~~I~l~d~~tG~~~~~-----l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
+|..|=.....+ ....+...-+....+|+....+.+.. ++|...|.+|+||| ||..||+|+ |++|++||+.
T Consensus 14 ~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~ 91 (388)
T d1erja_ 14 KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVS 91 (388)
T ss_dssp CCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETT
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECC-CCCEEEEEE-CCEEEEEEEC
T ss_conf 79997057658434753224688970898688777620541076079999689999999-999999994-9948999813
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 88428973798552111258616712478753178122334420187643058998533444578822764316987699
Q 000378 93 TEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY 172 (1605)
Q Consensus 93 ~~q~~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~ 172 (1605)
+.+...-+..+.. ...+ + ..... ....+|.. .|.+++|+|++..|+
T Consensus 92 ~~~~~~~~~~~~~---~~~~-----------~---------~~~~~-~~~~~~~~----------~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 92 DGSLVARLSDDSA---ANKD-----------P---------ENLNT-SSSPSSDL----------YIRSVCFSPDGKFLA 137 (388)
T ss_dssp TCCEEEEECC-----------------------------------------CCCC----------BEEEEEECTTSSEEE
T ss_pred CCCEEEEECCCCC---CCCC-----------C---------CCCCC-CCCCCCCC----------CEEEEEECCCCCCCE
T ss_conf 6405766316654---4324-----------4---------32111-01467789----------889999889998012
Q ss_pred EEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 981486289873134319998852242222330247652783089986589909963258999
Q 000378 173 VAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 173 ~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
+|+.||.||.|+..++.....+.+ |...+.+++|+|++..+++|+.+|.+++|+.....
T Consensus 138 s~~~dg~v~i~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 196 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKIVMILQG----HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196 (388)
T ss_dssp EEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 134441111211111111111111----11111110111111111122210156541011111
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.83 E-value=3.9e-18 Score=153.95 Aligned_cols=196 Identities=12% Similarity=0.086 Sum_probs=105.4
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-----------------------
Q ss_conf 333122112213-589999999814574789645666-4391599983667862520-----------------------
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS----------------------- 57 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~----------------------- 57 (1605)
|++.+...++.+ +|.. .+.+++|+|++.++++ +.+..|..|+.........
T Consensus 82 Wd~~~~~~~~~~~~~~~----~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (340)
T d1tbga_ 82 WDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157 (340)
T ss_dssp EETTTTEEEEEEECSCS----CEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEE
T ss_pred EECCCCEEEEEEECCCC----CEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
T ss_conf 31021025799724653----37756760121144310133201013322221222111001354211011111111111
Q ss_pred -----------------------CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCC------------EEEEECC
Q ss_conf -----------------------15895502432158999658997359808743068884------------2897379
Q 000378 58 -----------------------IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ------------SFVLHSP 102 (1605)
Q Consensus 58 -----------------------l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q------------~~v~~sp 102 (1605)
......+....+.| .+..++++..|++|+.||+.+.+ ++++|+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p 236 (340)
T d1tbga_ 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC
T ss_conf 1112445432001232211111233101576300124-421268760573699999999948899957889858999979
Q ss_pred CCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEE--ECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCE
Q ss_conf 855211-1258616712478753178122334420187643--0589985334445788227643169876999814862
Q 000378 103 EKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV--EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1605)
Q Consensus 103 ~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~--eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~ 179 (1605)
+++.++ ++.|++| +. |. ......+.++ ..+.. +|.+++|+|++.+|++|+.||.
T Consensus 237 ~~~~l~s~s~d~~i-------~~--~~----~~~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~l~~g~~dg~ 293 (340)
T d1tbga_ 237 NGNAFATGSDDATC-------RL--FD----LRADQELMTYSHDNIIC----------GITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp TSSEEEEEETTSCE-------EE--EE----TTTTEEEEEECCTTCCS----------CEEEEEECSSSCEEEEEETTSC
T ss_pred CCCEEEEEECCCEE-------EE--EE----ECCCCCCCCCCCCCCCC----------CEEEEEECCCCCEEEEEECCCE
T ss_conf 98999999699969-------99--75----21221111111224457----------4589999899999999979798
Q ss_pred EEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 898731343199988522422223302476527830899865899099632
Q 000378 180 IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 180 IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
|++||+.++....++.+ |...+.+++|+|++.+|++|+.||+|++|+
T Consensus 294 i~iwd~~~~~~~~~~~~----H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 294 CNVWDALKADRAGVLAG----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEEEEECC----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEECC----CCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 99999999939899848----999789999908999999990699799859
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=7.6e-18 Score=151.69 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=149.1
Q ss_pred CCCEEEECCCCCEEEEECCCEEEE--EECCCCCE--EEE-CCC-CCCEEEEEECCC-CCCEEEEEECCCCEEEECCCCCC
Q ss_conf 981457478964566643915999--83667862--520-158-955024321589-99658997359808743068884
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIE--FDTLTGSR--IAS-IDI-NSPVVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l--~d~~tG~~--~~~-l~~-~~~v~~lA~SP~-~g~~laa~~~D~tI~~wd~~~~q 95 (1605)
.+-+++|+|++..||++.|..+.+ ||...... +.. .+| ..+|..++|||. +|..|+++..|++|+.||+...+
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768888765028990789998899998117999799999489977985405886
Q ss_pred --------------------EEEEECCCCCCCCC-CCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf --------------------28973798552111-258616712478753178122334420187643058998533444
Q 000378 96 --------------------SFVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1605)
Q Consensus 96 --------------------~~v~~sp~~~~~~~-s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~d 154 (1605)
.++.|+|+++.+.. +.|... ...+|. ..+++.+.+++||..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~h~~------- 160 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-------FGVFIS----WDSGNSLGEVSGHSQ------- 160 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-------SEEEEE----TTTCCEEEECCSCSS-------
T ss_pred CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCC-------EEEEEE----ECCCCCCEEEEECCC-------
T ss_conf 21565100254113656737799989998822010012440-------478885----023311001200123-------
Q ss_pred CCCCCEEEEEECCCCE-EEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCC-CEEEEEECCCCEEEEEECC
Q ss_conf 5788227643169876-9998148628987313431999885224222233024765278-3089986589909963258
Q 000378 155 LKKPIVNLACHPRLPV-LYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 155 lkkpV~~LA~~P~~~v-L~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~-g~~l~~G~~dgtl~~W~vs 232 (1605)
+|.+++++|+.+. +++++.|+.|++|++.++....++.. ..-|...+.+++|+|+ +.++++|+.||+|++|++.
T Consensus 161 ---~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~ 236 (325)
T d1pgua1 161 ---RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236 (325)
T ss_dssp ---CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred ---CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCC-CCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEEC
T ss_conf ---4321111234320688862111221111221100000000-157777527763034531000011233210134300
Q ss_pred CCC
Q ss_conf 999
Q 000378 233 IER 235 (1605)
Q Consensus 233 ~~~ 235 (1605)
+.+
T Consensus 237 ~~~ 239 (325)
T d1pgua1 237 SGE 239 (325)
T ss_dssp TCC
T ss_pred CCC
T ss_conf 122
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=4.2e-17 Score=145.88 Aligned_cols=198 Identities=12% Similarity=0.048 Sum_probs=142.9
Q ss_pred CCC-CCCCCCCCCC-CEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf 213-5899999998-14574789645666-4391599983667862520-158955024321589996589973598087
Q 000378 12 RHV-GRGDHKPLQP-HEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1605)
Q Consensus 12 ~~~-g~~~~~~~~v-~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~ 87 (1605)
.++ ||.. .| .|+ ++++.+||+ +.|..|++||..+|..+.+ .+|..+|..|+||| + +.+++++.|++|+
T Consensus 6 ~tL~GH~~----~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMT----SVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSS----SCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-T-TEEEEEETTCCEE
T ss_pred EEECCCCC----CCEEEE--EECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-C-CEEEEEECCCCCC
T ss_conf 88898378----869999--98899999991899099998999939999978999889999869-9-9999996452443
Q ss_pred EECCCCCCE--------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEE-EECCCCCCC-
Q ss_conf 430688842--------------897379855211-125861671247875317812233442018764-305899853-
Q 000378 88 SCDFDTEQS--------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPTK- 150 (1605)
Q Consensus 88 ~wd~~~~q~--------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~- 150 (1605)
.|+....+. ...++++++.+. ++.|++| +. |. ..+...+.. .+.+..+..
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i-------~i--w~----~~~~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL-------HV--WK----LPKESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEE-------EE--EE----CCC-----------CCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE-------EE--EE----CCCCCEECCCCCCCEECCCE
T ss_conf 2111111111111001111111111111232204554388868-------99--98----56773001246520001000
Q ss_pred ---------CCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf ---------34445788227643169876999814862898731343199988522422223302476527830899865
Q 000378 151 ---------IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 151 ---------ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~ 221 (1605)
+...........++.+++..+++++.|+.|+.|++.++....+... +.....+..|+|++..+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 220 (355)
T d1nexb2 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG----HTDRIYSTIYDHERKRCISAS 220 (355)
T ss_dssp SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEEETTTTEEEEEE
T ss_pred ECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEEC----CCCCCCCCCCCCCCEEEECCC
T ss_conf 0011234012101100222100002563344211442044430131100011000----123321111112100210124
Q ss_pred CCCEEEEEECCCC
Q ss_conf 8990996325899
Q 000378 222 RRGTLLAWDVSIE 234 (1605)
Q Consensus 222 ~dgtl~~W~vs~~ 234 (1605)
.||++++|++.+.
T Consensus 221 ~d~~i~i~d~~~~ 233 (355)
T d1nexb2 221 MDTTIRIWDLENG 233 (355)
T ss_dssp TTSCEEEEETTTC
T ss_pred CCCEEEEEECCCC
T ss_conf 5636876301221
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=1.1e-17 Score=150.49 Aligned_cols=185 Identities=11% Similarity=0.092 Sum_probs=149.7
Q ss_pred CCCEEEECC--CCCEEEE-ECCCEEEEEECCCCCEEEE---------CCCCCCEEEEEECCCCCCEEEEEE--CCCCEEE
Q ss_conf 981457478--9645666-4391599983667862520---------158955024321589996589973--5980874
Q 000378 23 QPHEAAFHP--NQALIAV-AIGTYIIEFDTLTGSRIAS---------IDINSPVVRMAYSPTSGHAVVAIL--EDCTIRS 88 (1605)
Q Consensus 23 ~v~~~aF~P--~gallA~-a~g~~I~l~d~~tG~~~~~---------l~~~~~v~~lA~SP~~g~~laa~~--~D~tI~~ 88 (1605)
.+.+++||| ++.+||+ +.|..|++||..++..+.. ..+..+|..++|+| +|..++++. .|..++.
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEE
T ss_pred CEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC-CCCCCCEEECCCCCEEEE
T ss_conf 8899998117999799999489977985405886215651002541136567377999899-988220100124404788
Q ss_pred ECCCCCC------------EEEEECCCCCCCC--CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEE---EECCCCCCCC
Q ss_conf 3068884------------2897379855211--125861671247875317812233442018764---3058998533
Q 000378 89 CDFDTEQ------------SFVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT---VEGGRAPTKI 151 (1605)
Q Consensus 89 wd~~~~q------------~~v~~sp~~~~~~--~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt---~eG~~~~~~i 151 (1605)
|+.++.+ ++++|+|++.... .+.|+.+ +. |. ..+.+...+ .++|..
T Consensus 144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v-------~~--~d----~~~~~~~~~~~~~~~~~~---- 206 (325)
T d1pgua1 144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV-------VF--YQ----GPPFKFSASDRTHHKQGS---- 206 (325)
T ss_dssp EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEE-------EE--EE----TTTBEEEEEECSSSCTTC----
T ss_pred EEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC-------CC--CC----CCCCCCCEECCCCCCCCC----
T ss_conf 85023311001200123432111123432068886211122-------11--11----221100000000157777----
Q ss_pred CCCCCCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEC---CCCEEEEEECCCCEEE
Q ss_conf 4445788227643169-87699981486289873134319998852242222330247652---7830899865899099
Q 000378 152 KTDLKKPIVNLACHPR-LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFH---PTLEWLFVGDRRGTLL 227 (1605)
Q Consensus 152 k~dlkkpV~~LA~~P~-~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~---P~g~~l~~G~~dgtl~ 227 (1605)
+|.+++|+|+ +.+|++++.||.|++||+.++....+|++ |...+.+..|+ |+++.|++|+.|++|+
T Consensus 207 ------~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~----~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~ 276 (325)
T d1pgua1 207 ------FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED----DQEPVQGGIFALSWLDSQKFATVGADATIR 276 (325)
T ss_dssp ------CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB----TTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred ------CCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCC----CCCCCCCCEEEEECCCCCEEEEEECCCEEE
T ss_conf ------5277630345310000112332101343001222111111----111111100000036899999995899399
Q ss_pred EEECCCCC
Q ss_conf 63258999
Q 000378 228 AWDVSIER 235 (1605)
Q Consensus 228 ~W~vs~~~ 235 (1605)
+|++.+.+
T Consensus 277 iwd~~~~~ 284 (325)
T d1pgua1 277 VWDVTTSK 284 (325)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
T ss_conf 99999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.8e-17 Score=147.29 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=141.3
Q ss_pred CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCE-----------------------------------EEEC
Q ss_conf 589999999814574789645666-4391599983667862-----------------------------------5201
Q 000378 15 GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSR-----------------------------------IASI 58 (1605)
Q Consensus 15 g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~-----------------------------------~~~l 58 (1605)
+|.. .+.++++++ ..|++ +.|.+|++||..++.. +.+-
T Consensus 12 ~H~~----~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 12 AHDA----DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp CSSS----CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CCCC----CCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 6367----127999969--9999997999699878987887765404676542047716766675001579987689999
Q ss_pred --C-----------------------------CCCCEEEEEECCC----CCCEEEEEECCCCEEEECCCCC---------
Q ss_conf --5-----------------------------8955024321589----9965899735980874306888---------
Q 000378 59 --D-----------------------------INSPVVRMAYSPT----SGHAVVAILEDCTIRSCDFDTE--------- 94 (1605)
Q Consensus 59 --~-----------------------------~~~~v~~lA~SP~----~g~~laa~~~D~tI~~wd~~~~--------- 94 (1605)
+ ....+..+++++. .++.+++...|++|+.||+...
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred ECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 48991999982289820565124563243115789668999844788654217999838981999874047753410233
Q ss_pred ---------------------CEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf ---------------------42897379855211125861671247875317812233442018764305899853344
Q 000378 95 ---------------------QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 95 ---------------------q~~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
-.||+|+|++....+|.|++| ++ |+ ..+...+-+++.... -.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i-------~i--wd----~~~~~~~~~~~~~~~----l~ 228 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTV-------QI--SE----LSTLRPLYNFESQHS----MI 228 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEE-------EE--EE----TTTTEEEEEEECCC-------
T ss_pred EECCCEECCCCEECCCCCCCCEEEEEECCCCEEEEEECCCCE-------EE--EE----ECCCCCCCCCCCCCC----CC
T ss_conf 103200014510002578986789997899989999389829-------99--86----023321100001111----12
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCC---EEEEEECCCCEEEEEEEECC---------CCCCCCCEEEEECCCCEEEEEEC
Q ss_conf 4578822764316987699981486---28987313431999885224---------22223302476527830899865
Q 000378 154 DLKKPIVNLACHPRLPVLYVAYADG---LIRAYNIHTYAVHYTLQLDN---------TIKLLGAGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 154 dlkkpV~~LA~~P~~~vL~~a~~dg---~IR~w~i~t~~v~~tL~~~~---------~~~~~g~~a~Af~P~g~~l~~G~ 221 (1605)
.|..+|++|+||||+..|++|+.|+ .||+|+++++....+|.... .-|...+.+++|+|++++|++|+
T Consensus 229 ~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s 308 (393)
T d1sq9a_ 229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308 (393)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEC
T ss_conf 42563877004665320112428988421001035321344431156666431023202358666001389888069877
Q ss_pred CCCEEEEEECCCC
Q ss_conf 8990996325899
Q 000378 222 RRGTLLAWDVSIE 234 (1605)
Q Consensus 222 ~dgtl~~W~vs~~ 234 (1605)
.|++|++|++.+.
T Consensus 309 ~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 309 WDGKLRFWDVKTK 321 (393)
T ss_dssp TTSEEEEEETTTT
T ss_pred CCCEEEEEECCCC
T ss_conf 9998999999999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=1.7e-18 Score=156.71 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCCCCCCCC-CCCC-CCCCCCCCCCCEEEECCCCC-EEEE--ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCE
Q ss_conf 433312211-2213-58999999981457478964-5666--43915999836678625201589550243215899965
Q 000378 2 EWATVQHLD-LRHV-GRGDHKPLQPHEAAFHPNQA-LIAV--AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHA 76 (1605)
Q Consensus 2 ~W~~~~~~~-l~~~-g~~~~~~~~v~~~aF~P~ga-llA~--a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~ 76 (1605)
||+..+-++ ++-+ -+.. .|.-..|..|.+ ++.| +.+..|.+||+.||..+..+..+..+..++||| ||..
T Consensus 1 ~~~~~~~~~s~~~~~~~~~----~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSP-DGk~ 75 (426)
T d1hzua2 1 EWGMPEMRESWKVLVKPED----RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRY 75 (426)
T ss_dssp CCCHHHHHHHCEESSCGGG----SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECT-TSCE
T ss_pred CCCHHHHHHHHEEECCCCC----CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECC-CCCE
T ss_conf 9885785412115078443----7875021679870899997599979999999995999996899803899989-9999
Q ss_pred EEEEECCCCEEEECCCCCC
Q ss_conf 8997359808743068884
Q 000378 77 VVAILEDCTIRSCDFDTEQ 95 (1605)
Q Consensus 77 laa~~~D~tI~~wd~~~~q 95 (1605)
++++..|++|+.||+.+.+
T Consensus 76 l~~~~~d~~v~vwd~~t~~ 94 (426)
T d1hzua2 76 LLVIGRDARIDMIDLWAKE 94 (426)
T ss_dssp EEEEETTSEEEEEETTSSS
T ss_pred EEEEECCCCEEEEECCCCC
T ss_conf 9999589988999756886
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-16 Score=141.50 Aligned_cols=194 Identities=14% Similarity=0.114 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEE
Q ss_conf 333122112213-589999999814574789645666-4391599983667862520-1589550243215899965899
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|.....+..+.+ ||.+ .|-+ ||+++|.+||+ +.|..|++||..||..+.+ .+|..+|.+++|+| ..+++
T Consensus 1 W~~~~~~~~~~l~GH~~----~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s 72 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDD----HVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIIS 72 (342)
T ss_dssp HHHSCCCCCEEEECSTT----SCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEE
T ss_pred CCCCCCCCCEEECCCCC----CEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC---CCCCC
T ss_conf 98998875889888687----5099-9997899999991899099998999979999948899989999479---86321
Q ss_pred EECCCCEEEECCCCCCEEEEEC-----------CCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 7359808743068884289737-----------98552111258616712478753178122334420187643058998
Q 000378 80 ILEDCTIRSCDFDTEQSFVLHS-----------PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~~v~~s-----------p~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
++.|++++.|+.........+. .+......+.|.++ .+|. ..+.....++.....
T Consensus 73 ~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i---------~~~~----~~~~~~~~~~~~~~~- 138 (342)
T d2ovrb2 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL---------RVWD----IETGQCLHVLMGHVA- 138 (342)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE---------EEEE----SSSCCEEEEEECCSS-
T ss_pred CEECCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEE---------EEEE----CCCCCCEEEEECCCC-
T ss_conf 00000111111110000000123330476520246522123444037---------8740----355630011100111-
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 53344457882276431698769998148628987313431999885224222233024765278308998658990996
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 228 (1605)
Q Consensus 149 ~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~ 228 (1605)
....+.+....+++++.|+.||+|+........++.. |.... ..+++++..+++|+.||+|++
T Consensus 139 -----------~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~~--~~~~~~~~~l~s~~~dg~i~~ 201 (342)
T d2ovrb2 139 -----------AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG----HTNRV--YSLQFDGIHVVSGSLDTSIRV 201 (342)
T ss_dssp -----------CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC----CSSCE--EEEEECSSEEEEEETTSCEEE
T ss_pred -----------CCEEECCCCCEEEEECCCCEEEEEECCCCEEEEEECC----CCCCC--CCCCCCCCEEEEEECCCEEEE
T ss_conf -----------1000001333024335898699952523436678727----54442--100689999999958993999
Q ss_pred EECCCCC
Q ss_conf 3258999
Q 000378 229 WDVSIER 235 (1605)
Q Consensus 229 W~vs~~~ 235 (1605)
|++...+
T Consensus 202 ~d~~~~~ 208 (342)
T d2ovrb2 202 WDVETGN 208 (342)
T ss_dssp EETTTCC
T ss_pred EECCCCE
T ss_conf 5255653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=2.8e-17 Score=147.29 Aligned_cols=180 Identities=11% Similarity=0.048 Sum_probs=133.7
Q ss_pred CCCEEEECCC-----CCEEEE-ECCCEEEEEECCCCC-------------------EEEECCCCCCEEEEEECCCCCCEE
Q ss_conf 9814574789-----645666-439159998366786-------------------252015895502432158999658
Q 000378 23 QPHEAAFHPN-----QALIAV-AIGTYIIEFDTLTGS-------------------RIASIDINSPVVRMAYSPTSGHAV 77 (1605)
Q Consensus 23 ~v~~~aF~P~-----gallA~-a~g~~I~l~d~~tG~-------------------~~~~l~~~~~v~~lA~SP~~g~~l 77 (1605)
...+++|.++ +..+++ +.+..|.+||..... ......+...+..++||| +| .+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~l 198 (393)
T d1sq9a_ 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LI 198 (393)
T ss_dssp CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EE
T ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECC-CC-EE
T ss_conf 66899984478865421799983898199987404775341023310320001451000257898678999789-99-89
Q ss_pred EEEECCCCEEEECCCCCC------------------EEEEECCCCCCCC-CCCCCE---EEECCCCCCCEEEECCCCCCC
Q ss_conf 997359808743068884------------------2897379855211-125861---671247875317812233442
Q 000378 78 VAILEDCTIRSCDFDTEQ------------------SFVLHSPEKKMES-ISVDTE---VHLALTPLQPVVFFGFHRRMS 135 (1605)
Q Consensus 78 aa~~~D~tI~~wd~~~~q------------------~~v~~sp~~~~~~-~s~d~~---vh~a~t~~~l~vw~~~~~~~s 135 (1605)
|+++.|++|+.||+.+.+ .+++||||++.++ +|.|.+ | ++ |. ..+
T Consensus 199 asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i-------~l--wd----~~~ 265 (393)
T d1sq9a_ 199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI-------TL--YE----TEF 265 (393)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE-------EE--EE----TTT
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEE-------EE--CC----CCC
T ss_conf 999389829998602332110000111112425638770046653201124289884210-------01--03----532
Q ss_pred EEEEEEEECCCCCCCCC---CCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCE----EE
Q ss_conf 01876430589985334---445788227643169876999814862898731343199988522422223302----47
Q 000378 136 VTVVGTVEGGRAPTKIK---TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG----AF 208 (1605)
Q Consensus 136 ~~~vgt~eG~~~~~~ik---~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~----a~ 208 (1605)
+..+.++.......+.. ..|...|.+|+|+||+++|++++.|++||+||+.+++..++|.+ |...+. .+
T Consensus 266 g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g----H~~~v~~~~~~~ 341 (393)
T d1sq9a_ 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM----HCDDIEIEEDIL 341 (393)
T ss_dssp CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC----CGGGCSSGGGCC
T ss_pred CEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECC----CCCCCCCCCCEE
T ss_conf 1344431156666431023202358666001389888069877999899999999979999988----687613773489
Q ss_pred EECCCCEEEEEEC
Q ss_conf 6527830899865
Q 000378 209 AFHPTLEWLFVGD 221 (1605)
Q Consensus 209 Af~P~g~~l~~G~ 221 (1605)
+|+|+++.+++++
T Consensus 342 ~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 342 AVDEHGDSLAEPG 354 (393)
T ss_dssp CBCTTSCBCSSCC
T ss_pred EECCCCCEEEECC
T ss_conf 9999999999831
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.77 E-value=5.2e-17 Score=145.17 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=160.2
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEE----CCCCCCEEEEEECCCCCC
Q ss_conf 4333122112213--5899999998145747896456664391599983667862520----158955024321589996
Q 000378 2 EWATVQHLDLRHV--GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGH 75 (1605)
Q Consensus 2 ~W~~~~~~~l~~~--g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~----l~~~~~v~~lA~SP~~g~ 75 (1605)
-|++.+...++.+ +|.. .+.+++|+|++.+++++.|..|++|+......... ..+...+..++++| +|.
T Consensus 38 vWd~~~~~~~~~~~~~h~~----~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~ 112 (299)
T d1nr0a2 38 SWDISTGISNRVFPDVHAT----MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGD 112 (299)
T ss_dssp EEETTTCCEEECSSCSCSS----CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSS
T ss_pred EEECCCCCEEEEECCCCCC----CEEEEEEECCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 9999999688998378877----48998840331121023102688731677620111000111134432100112-211
Q ss_pred EEEEEECCCCEEEECCCCC--------CEEEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEE-EEECC
Q ss_conf 5899735980874306888--------42897379855211-12586167124787531781223344201876-43058
Q 000378 76 AVVAILEDCTIRSCDFDTE--------QSFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG-TVEGG 145 (1605)
Q Consensus 76 ~laa~~~D~tI~~wd~~~~--------q~~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vg-t~eG~ 145 (1605)
.+++++ +..|+.|+.... .++++++|+++.++ ++.|+.+ +. |. ..+..... ...+|
T Consensus 113 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i-------~~--~d----~~~~~~~~~~~~~~ 178 (299)
T d1nr0a2 113 IAVAAC-YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV-------HV--YK----LSGASVSEVKTIVH 178 (299)
T ss_dssp CEEEEE-SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE-------EE--EE----EETTEEEEEEEEEC
T ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CC--CC----CCCCCCCCCCCCCC
T ss_conf 111222-222211111111110111123322111111111111111111-------11--11----11111111111111
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEE---EEEECCCCCCCCCEEEEECCCCEEEEEECC
Q ss_conf 99853344457882276431698769998148628987313431999---885224222233024765278308998658
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY---TLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1605)
Q Consensus 146 ~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~---tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~ 222 (1605)
.. +|.+++++|++..|++++.|+.|+.|++.+..... ++.. |...+.+++|+|++.++++|+.
T Consensus 179 ~~----------~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 179 PA----------EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF----HTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp SS----------CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC----CSSCEEEEEECTTSSEEEEEET
T ss_pred CC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEEECC
T ss_conf 11----------111111111111111111111111111111111111111111----1111111124666451388828
Q ss_pred CCEEEEEECCCCCC
Q ss_conf 99099632589998
Q 000378 223 RGTLLAWDVSIERP 236 (1605)
Q Consensus 223 dgtl~~W~vs~~~~ 236 (1605)
||+|++|++.+...
T Consensus 245 dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 245 DNSVIVWNMNKPSD 258 (299)
T ss_dssp TSCEEEEETTCTTS
T ss_pred CCEEEEEECCCCCC
T ss_conf 99799998999973
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=2.4e-16 Score=140.07 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=148.3
Q ss_pred EEECC-CCCEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCC--CEEEECCCCCCE-------
Q ss_conf 57478-96456664391599983667862520158955024321589996589973598--087430688842-------
Q 000378 27 AAFHP-NQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC--TIRSCDFDTEQS------- 96 (1605)
Q Consensus 27 ~aF~P-~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~--tI~~wd~~~~q~------- 96 (1605)
--||| ||+++|.+-+-.|.+||+.+|..+.+ .|...|..++||| ||..|+....|. +|+.||..+++.
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~ 85 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL 85 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEECCCCC
T ss_pred CCCCCCCCCEEEEEECCEEEEEECCCCCEEEC-CCCCCEEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCC
T ss_conf 51468899999999899699998999948991-6999888899989-999999999289989999989999488750897
Q ss_pred ----EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf ----897379855211-125861671247875317812233442018764305899853344457882276431698769
Q 000378 97 ----FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1605)
Q Consensus 97 ----~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL 171 (1605)
+++|+||++.++ .+.|.++ ++|. ..+.....++..|.. .+.+++++||+..|
T Consensus 86 ~~v~~~~~spdg~~l~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~----------~~~~~~~spdg~~l 142 (360)
T d1k32a3 86 GNVFAMGVDRNGKFAVVANDRFEI---------MTVD----LETGKPTVIERSREA----------MITDFTISDNSRFI 142 (360)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEE---------EEEE----TTTCCEEEEEECSSS----------CCCCEEECTTSCEE
T ss_pred CEEEEEEECCCCCCCCEECCCCCC---------CCCC----CCCCCEEEEEECCCC----------CCCCHHHCCCEEEE
T ss_conf 127741211454321000111110---------0000----122210000001355----------20230121322566
Q ss_pred EEE----------ECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 998----------148628987313431999885224222233024765278308998658990996325899
Q 000378 172 YVA----------YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 172 ~~a----------~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
+.+ ..++.++.|++.++... .+.. +......++|+|+|+.|++++.|+++..|+....
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~----~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATT----ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSC----SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred EEECCCCCCCEEECCCCCEEEECCCCCCEE-EECC----CCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCC
T ss_conf 521233121100025654266304557135-3035----4322110012577999999959985575333544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=4.6e-17 Score=145.56 Aligned_cols=203 Identities=10% Similarity=0.110 Sum_probs=124.1
Q ss_pred CCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE----CCCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf 2213-589999999814574789645666-4391599983667862520----158955024321589996589973598
Q 000378 11 LRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGHAVVAILEDC 84 (1605)
Q Consensus 11 l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~----l~~~~~v~~lA~SP~~g~~laa~~~D~ 84 (1605)
++.. +|.+ .|.+++|||++.+||+ +.|.+|++||..++..... .+|..+|..++|+|.++..++++..|+
T Consensus 4 v~~~~~h~d----~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 4 VQIEQAPKD----YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp EECSSCCSS----CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred EECCCCCCC----CEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCC
T ss_conf 976889989----7888999589999999979992999975699863689885589998899999589997899812653
Q ss_pred CEEEECCCCCCE-------------EEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCC
Q ss_conf 087430688842-------------897379855211-125861671247875317812233442018764305899853
Q 000378 85 TIRSCDFDTEQS-------------FVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1605)
Q Consensus 85 tI~~wd~~~~q~-------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ 150 (1605)
+|+.||...... ...+.++..... .+.|+++ +. |..-.............++..
T Consensus 80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--wd~~~~~~~~~~~~~~~~~~~--- 147 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI-------EV--IDPRNYGDGVIAVKNLNSNNT--- 147 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEE-------EE--ECHHHHTTBCEEEEESCSSSS---
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CE--EECCCCCCCEEEECCCCCCCC---
T ss_conf 114542044320000011111111111111111111110122211-------10--202344433023000243001---
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEEC---------------------------------
Q ss_conf 34445788227643169876999814862898731343199988522---------------------------------
Q 000378 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLD--------------------------------- 197 (1605)
Q Consensus 151 ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~--------------------------------- 197 (1605)
........+.++...+++++.|+.|+.|++.+..........
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~ 222 (342)
T d1yfqa_ 148 -----KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp -----SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred -----CCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf -----200000100016870246517984788760567634111210254221014676369998788654899599998
Q ss_pred ------------------------CCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC
Q ss_conf ------------------------4222233024765278308998658990996325899
Q 000378 198 ------------------------NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 198 ------------------------~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
..-|...+.+++|||++.+|++|+.||+|++|++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCC
T ss_conf 0598640111235125655531477762354315996698447999879998999999989
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=7.4e-17 Score=143.99 Aligned_cols=208 Identities=13% Similarity=0.165 Sum_probs=137.4
Q ss_pred CCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 112213-589999999814574789645666-439159998366786252015895502432158999658997359808
Q 000378 9 LDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTI 86 (1605)
Q Consensus 9 ~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI 86 (1605)
+.+|.+ ||.. .+.|++|+| |++ +.|..|++||..++. ..|...|..+++++ ++ .+++++.|.+|
T Consensus 4 ~~i~~l~gH~~----~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~-~~-~~~s~s~D~~v 69 (287)
T d1pgua2 4 EVLKTISGHNK----GITALTVNP----LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSK-AQ-EYSSISWDDTL 69 (287)
T ss_dssp EEEEEECCCSS----CEEEEETTT----TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCS-TT-CCEEEETTTEE
T ss_pred CEEEEECCCCC----CEEEEEECC----EEEEECCCEEEEEECCCCC----CCCCCCEEEEEECC-CC-EEEEEEECCCC
T ss_conf 03499988798----649999895----7898489919999899988----88778789999659-97-28988610122
Q ss_pred EEECCCCCC-----EEEEECCCCCCCCCCCCCEEEECCCCC-CCEEEECC-------CCCCCEEEEEEEE----------
Q ss_conf 743068884-----289737985521112586167124787-53178122-------3344201876430----------
Q 000378 87 RSCDFDTEQ-----SFVLHSPEKKMESISVDTEVHLALTPL-QPVVFFGF-------HRRMSVTVVGTVE---------- 143 (1605)
Q Consensus 87 ~~wd~~~~q-----~~v~~sp~~~~~~~s~d~~vh~a~t~~-~l~vw~~~-------~~~~s~~~vgt~e---------- 143 (1605)
++||..+.+ .++.+++++.....+.+..+.+-...- ..+--+.+ +-......++.-.
T Consensus 70 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~ 149 (287)
T d1pgua2 70 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 149 (287)
T ss_dssp EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECC
T ss_conf 21111111112210146641678569996033210000110035431012220356521475111000221000210001
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEE-EEECCCCCCCCCEEEEECCCC--------
Q ss_conf 58998533444578822764316987699981486289873134319998-852242222330247652783--------
Q 000378 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT-LQLDNTIKLLGAGAFAFHPTL-------- 214 (1605)
Q Consensus 144 G~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~t-L~~~~~~~~~g~~a~Af~P~g-------- 214 (1605)
.......++..++.+|.+++|+|++..|++++.||.|++|++.++..... +.. |...+.+++|+|.+
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~~~~~~~ 225 (287)
T d1pgua2 150 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----RTSKINAISWKPAEKGANEEEI 225 (287)
T ss_dssp EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----CSSCEEEEEECCCC------CC
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC----CCCCCCEEEECCCCCCCCCCCC
T ss_conf 221000121024785369995167652110111111000000233211000111----1111100000136541001267
Q ss_pred --EEEEEECCCCEEEEEECCCC
Q ss_conf --08998658990996325899
Q 000378 215 --EWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 215 --~~l~~G~~dgtl~~W~vs~~ 234 (1605)
+++++|+.|++|++|++..+
T Consensus 226 ~~~~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 226 EEDLVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp SCCEEEEEETTSCEEEEESSCT
T ss_pred CCCEEEEECCCCEEEEEECCCC
T ss_conf 8870276649995999888999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.8e-15 Score=133.13 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEE---CCCCCCEEEEEECCCCCCEEE
Q ss_conf 333122112213-5899999998145747896456664391599983667862520---158955024321589996589
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAVV 78 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~la 78 (1605)
|++.+...++.+ +|.. .|.+++|+|++.++..+.|..|++|+..++..... ...........++| ++..++
T Consensus 38 Wd~~~~~~~~~l~~H~~----~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 112 (355)
T d1nexb2 38 YDSINKKFLLQLSGHDG----GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIV 112 (355)
T ss_dssp EETTTTEEEEEEECCSS----CEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEE
T ss_pred EECCCCCEEEEEECCCC----CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEE
T ss_conf 98999939999978999----8899998699999999645244321111111111110011111111111112-322045
Q ss_pred EEECCCCEEEECCCCCCE---------------------------------EEEECCCCCCCC-CCCCCEEEECCCCCCC
Q ss_conf 973598087430688842---------------------------------897379855211-1258616712478753
Q 000378 79 AILEDCTIRSCDFDTEQS---------------------------------FVLHSPEKKMES-ISVDTEVHLALTPLQP 124 (1605)
Q Consensus 79 a~~~D~tI~~wd~~~~q~---------------------------------~v~~sp~~~~~~-~s~d~~vh~a~t~~~l 124 (1605)
.+..|++|+.||+.+... ...+.+++..+. .+.|+.+ +.
T Consensus 113 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i-------~~ 185 (355)
T d1nexb2 113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL-------IV 185 (355)
T ss_dssp EEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCE-------EE
T ss_pred EECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEE-------EE
T ss_conf 54388868999856773001246520001000001123401210110022210000256334421144204-------44
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 17812233442018764305899853344457882276431698769998148628987313431999885224222233
Q 000378 125 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204 (1605)
Q Consensus 125 ~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g 204 (1605)
|+ ..+...+.+..++.. ++.+++++|+...+++++.|+.||+|++.++.....+++ |...
T Consensus 186 --~d----~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----h~~~ 245 (355)
T d1nexb2 186 --WD----VAQMKCLYILSGHTD----------RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG----HTAL 245 (355)
T ss_dssp --EE----TTTTEEEEEECCCSS----------CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC----CSSC
T ss_pred --EE----CCCCCCEEEEECCCC----------CCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCC----CCCC
T ss_conf --30----131100011000123----------321111112100210124563687630122111111111----1111
Q ss_pred CEEEEECCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 0247652783089986589909963258999
Q 000378 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 205 ~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~ 235 (1605)
+.+++|+| +.+++|+.||+|++|++....
T Consensus 246 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 246 VGLLRLSD--KFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp CCEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCCCC--CEEEEEECCCCCCCCCCCCCC
T ss_conf 11112321--003332011111111111111
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.71 E-value=8.5e-16 Score=135.70 Aligned_cols=144 Identities=10% Similarity=0.037 Sum_probs=99.8
Q ss_pred EEEEECCCCCCEEEEEECCCCEEEECCCCCCE----------EEEECCCCCCCCC-CCCCEEEECCCCCCCEEEECCCCC
Q ss_conf 24321589996589973598087430688842----------8973798552111-258616712478753178122334
Q 000378 65 VRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRR 133 (1605)
Q Consensus 65 ~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~----------~v~~sp~~~~~~~-s~d~~vh~a~t~~~l~vw~~~~~~ 133 (1605)
-+.-|||+||..+|... ++.|++||..+.+. +++||||++.+.. +.|..- .+++|. .
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~-------~v~v~d----~ 73 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD-------FLGIYD----Y 73 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEE-------EEEEEE----T
T ss_pred HCCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCC-------EEEEEE----C
T ss_conf 00514688999999998-99699998999948991699988889998999999999928998-------999998----9
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf 42018764305899853344457882276431698769998148628987313431999885224222233024765278
Q 000378 134 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT 213 (1605)
Q Consensus 134 ~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~ 213 (1605)
.++.+. .+.+|.. .|.+++|+||+..|++++.++.++.|++.++....++.. |.....+++|+|+
T Consensus 74 ~~~~~~-~~~~~~~----------~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~spd 138 (360)
T d1k32a3 74 RTGKAE-KFEENLG----------NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----REAMITDFTISDN 138 (360)
T ss_dssp TTCCEE-ECCCCCC----------SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----SSSCCCCEEECTT
T ss_pred CCCCEE-EEECCCC----------EEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEEC----CCCCCCCHHHCCC
T ss_conf 999488-7508971----------277412114543210001111100000122210000001----3552023012132
Q ss_pred CEEEEEE----------CCCCEEEEEECCCCC
Q ss_conf 3089986----------589909963258999
Q 000378 214 LEWLFVG----------DRRGTLLAWDVSIER 235 (1605)
Q Consensus 214 g~~l~~G----------~~dgtl~~W~vs~~~ 235 (1605)
|++|+.. ..++++.+|++.+..
T Consensus 139 g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEEEEEECCCCCCCEEECCCCCEEEECCCCCC
T ss_conf 25665212331211000256542663045571
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=2.3e-15 Score=132.30 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=140.8
Q ss_pred CCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCC-CEEEECCCCCC------
Q ss_conf 98145747896456664391599983667862520158955024321589996589973598-08743068884------
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC-TIRSCDFDTEQ------ 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~-tI~~wd~~~~q------ 95 (1605)
+|.+++|++++.+++++.+..|..|+..++..+..+....++. +++| ++..++++..|+ +|+.|++...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~ 158 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 158 (287)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEECCCEEEEEECCCCCEEE--EEEC-CCCCEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 1014664167856999603321000011003543101222035--6521-475111000221000210001221000121
Q ss_pred -------EEEEECCCCCCCC-CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEE-EECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf -------2897379855211-125861671247875317812233442018764-3058998533444578822764316
Q 000378 96 -------SFVLHSPEKKMES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPTKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 96 -------~~v~~sp~~~~~~-~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt-~eG~~~~~~ik~dlkkpV~~LA~~P 166 (1605)
+++.|+|++..++ ++.|+.| +. |. ..+...+.. ..+|.. +|.+++++|
T Consensus 159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i-------~i--~d----~~~~~~~~~~~~~h~~----------~v~~~~~~p 215 (287)
T d1pgua2 159 TPLRAKPSYISISPSETYIAAGDVMGKI-------LL--YD----LQSREVKTSRWAFRTS----------KINAISWKP 215 (287)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCE-------EE--EE----TTTTEEEECCSCCCSS----------CEEEEEECC
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCC-------CC--EE----ECCCCCCCCCCCCCCC----------CCCEEEECC
T ss_conf 0247853699951676521101111110-------00--00----0233211000111111----------110000013
Q ss_pred CC----------CEEEEEECCCEEEEEECCC-CEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEC
Q ss_conf 98----------7699981486289873134-31999885224222233024765278308998658990996325
Q 000378 167 RL----------PVLYVAYADGLIRAYNIHT-YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1605)
Q Consensus 167 ~~----------~vL~~a~~dg~IR~w~i~t-~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~v 231 (1605)
+. .+|++|+.|+.||+|++.+ ......+.+ |..++.+++|+|++. +++++.||++++|++
T Consensus 216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~----h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA----HKDGVNNLLWETPST-LVSSGADACIKRWNV 286 (287)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS----STTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECC----CCCCEEEEEECCCCE-EEEEECCCEEEEEEE
T ss_conf 65410012678870276649995999888999758999278----789858999989998-999979992999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.66 E-value=6.1e-15 Score=129.02 Aligned_cols=87 Identities=10% Similarity=-0.052 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE------CCCCCCEEEEEECCCCCC
Q ss_conf 333122112213589999999814574789645666-4391599983667862520------158955024321589996
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS------IDINSPVVRMAYSPTSGH 75 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~------l~~~~~v~~lA~SP~~g~ 75 (1605)
|++.+.+.++.+..+. .|++++|||||++|++ +.|.+|.+||+.||....+ .++...+.+++||| ||.
T Consensus 47 wD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~ 121 (426)
T d1hzua2 47 VDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDR 121 (426)
T ss_dssp EETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTT
T ss_pred EECCCCCEEEEEECCC----CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECC-CCC
T ss_conf 9999995999996899----80389998999999999589988999756886048999867888764588500268-898
Q ss_pred EE-EEEECCCCEEEECCCCC
Q ss_conf 58-99735980874306888
Q 000378 76 AV-VAILEDCTIRSCDFDTE 94 (1605)
Q Consensus 76 ~l-aa~~~D~tI~~wd~~~~ 94 (1605)
.+ ++...|.+|+.||..+.
T Consensus 122 ~l~v~~~~~~~v~i~d~~~~ 141 (426)
T d1hzua2 122 YTIAGAYWPPQFAIMDGETL 141 (426)
T ss_dssp EEEEEEEESSEEEEEETTTC
T ss_pred EEEEEECCCCEEEEECCCCC
T ss_conf 79996358976999857764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7e-14 Score=120.75 Aligned_cols=181 Identities=17% Similarity=0.143 Sum_probs=132.1
Q ss_pred CCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCEEE--
Q ss_conf 9814574789645666-4391599983667862520-15895502432158999658997359808743068884289--
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV-- 98 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v-- 98 (1605)
.|.|+ ++|+.+||+ +.|..|++||..+|..+.+ .+|..+|.+|+|+ +..|++++.|++|+.|+........
T Consensus 17 ~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~~~ 91 (293)
T d1p22a2 17 GVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTL 91 (293)
T ss_dssp CEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred CEEEE--EECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECC---CCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999--8769999999289939999999991999992677877634236---300210011101100000246410011
Q ss_pred --------EECCC-CCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf --------73798-552111258616712478753178122334420187643058998533444578822764316987
Q 000378 99 --------LHSPE-KKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1605)
Q Consensus 99 --------~~sp~-~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~ 169 (1605)
...+. +.....+.++.+ +. |.-... .......++..|.. +|..+.+.+ .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~-~~~~~~~~~~~~~~----------~v~~~~~~~--~ 149 (293)
T d1p22a2 92 IHHCEAVLHLRFNNGMMVTCSKDRSI-------AV--WDMASP-TDITLRRVLVGHRA----------AVNVVDFDD--K 149 (293)
T ss_dssp CCCCSCEEEEECCTTEEEEEETTSCE-------EE--EECSSS-SCCEEEEEECCCSS----------CEEEEEEET--T
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCE-------EE--EECCCC-CCCCCCCCCCCCCC----------CCCCCEECC--C
T ss_conf 11110000111111000001356630-------68--613445-44421210001135----------431100000--2
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCC
Q ss_conf 6999814862898731343199988522422223302476527830899865899099632589998
Q 000378 170 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 170 vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~ 236 (1605)
.+++++.|+.|+.|++.++....++.. +...+..+.++ +..+++|..||+|++|++.+.++
T Consensus 150 ~~~~~s~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 210 (293)
T d1p22a2 150 YIVSASGDRTIKVWNTSTCEFVRTLNG----HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC 210 (293)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEECCCCCCEEEEECC----CCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEE
T ss_conf 201106998604100788838899715----54453221689--87588765899899986655614
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=8.1e-14 Score=120.30 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=106.0
Q ss_pred EEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCE------------EEEECCCCCCCCC-CCC
Q ss_conf 983667862520158955024321589996589973598087430688842------------8973798552111-258
Q 000378 46 EFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMESI-SVD 112 (1605)
Q Consensus 46 l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~------------~v~~sp~~~~~~~-s~d 112 (1605)
+|-.....+....+|..+|.+|+||| ++..|++++.|++|+.||+.+.+. ++.++|++..++. +.+
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~ 80 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCCCCCEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 36898984489858888768999938-98999999389929999899997999995788867777630111101111111
Q ss_pred CEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 61671247875317812233442018764305899853344457882276431698769998148628987313431999
Q 000378 113 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 192 (1605)
Q Consensus 113 ~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~ 192 (1605)
.++ .. |. .........+.+|.. .+.++.++|++..+++++.|+.++.|++.++....
T Consensus 81 ~~~-------~~--~~----~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 137 (317)
T d1vyhc1 81 MTI-------KL--WD----FQGFECIRTMHGHDH----------NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137 (317)
T ss_dssp SCC-------CE--EE----TTSSCEEECCCCCSS----------CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCC-------CC--CC----CCCCCCCCCCCCCCC----------CCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEE
T ss_conf 110-------11--10----011111111000000----------00000016998557765267523575114430346
Q ss_pred EEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCC
Q ss_conf 88522422223302476527830899865899099632589998
Q 000378 193 TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1605)
Q Consensus 193 tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~ 236 (1605)
++.. |...+.+++|+|++..+++|+.||++.+|+.....+
T Consensus 138 ~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 177 (317)
T d1vyhc1 138 TFTG----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 177 (317)
T ss_dssp EEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EECC----CCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEE
T ss_conf 8716----777630000166799999992798299975125403
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.65 E-value=9.1e-14 Score=119.88 Aligned_cols=212 Identities=18% Similarity=0.217 Sum_probs=147.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE--ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEE
Q ss_conf 4333122112213589999999814574789645666--43915999836678625201589550243215899965899
Q 000378 2 EWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 2 ~W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa 79 (1605)
-|++.+.+.++.+..+. .|++++|+|||+.|++ +.+..|.+||..|+..+..+.....+..++|++.+...+++
T Consensus 16 v~D~~t~~~~~~i~~g~----~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (301)
T d1l0qa2 16 VIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT 91 (301)
T ss_dssp EEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred EEECCCCEEEEEEECCC----CCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99999995999998899----83699992898999999789998999999989410320002464311000111111111
Q ss_pred EECCCCEEEECCCCCCE-----------EEEECCCCCCCCC--CCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCC
Q ss_conf 73598087430688842-----------8973798552111--2586167124787531781223344201876430589
Q 000378 80 ILEDCTIRSCDFDTEQS-----------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR 146 (1605)
Q Consensus 80 ~~~D~tI~~wd~~~~q~-----------~v~~sp~~~~~~~--s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~ 146 (1605)
...|..++.||..+.+. ++.++|+++.+.. +.|.++.+ |+ ..+...+.++..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~ 158 (301)
T d1l0qa2 92 NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSV---------IN----TVTKAVINTVSVGR 158 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEE---------EE----TTTTEEEEEEECCS
T ss_pred CCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEE---------EE----CCCCCEEEECCCCC
T ss_conf 111100110012430243202444442378760589715542011110011---------00----01463035315678
Q ss_pred CC-----------------------------CCC--CCCCCCCCEEEEEECCCCEEEEEECC---CEEEEEECCCCEEEE
Q ss_conf 98-----------------------------533--44457882276431698769998148---628987313431999
Q 000378 147 AP-----------------------------TKI--KTDLKKPIVNLACHPRLPVLYVAYAD---GLIRAYNIHTYAVHY 192 (1605)
Q Consensus 147 ~~-----------------------------~~i--k~dlkkpV~~LA~~P~~~vL~~a~~d---g~IR~w~i~t~~v~~ 192 (1605)
.| .++ .......+.+++++|++..+|++..| +.|+.||..++....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~ 238 (301)
T d1l0qa2 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEE
T ss_conf 84288860465401310121111111111100011101335775031101111011110021000023236569981999
Q ss_pred EEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEEECCCCC
Q ss_conf 88522422223302476527830899-86589909963258999
Q 000378 193 TLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 193 tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs~~~ 235 (1605)
++.. + ....++||+|||++|+ ++..+++|.+|++.+.+
T Consensus 239 ~~~~----~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 239 RIPV----G-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp EEEC----C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EECC----C-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 9848----9-9877999918989999998999969999999995
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.8e-13 Score=117.55 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=35.0
Q ss_pred CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCC
Q ss_conf 8227643169876999814862898731343199988522422223302476527830899865899099632589
Q 000378 158 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+|.+ ++++++..|++|+.||+||+||+.++....++.+ |..++.+++|+|+ .|++|+.|+++++|+...
T Consensus 18 ~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~----h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 18 HVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG----HTGGVWSSQMRDN--IIISGSTDRTLKVWNAET 86 (342)
T ss_dssp SCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCC----CSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred CEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEEC----CCCCEEEEEECCC--CCCCCEECCCCCCCCCCC
T ss_conf 5099-9997899999991899099998999979999948----8999899994798--632100000111111110
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=2.9e-13 Score=116.01 Aligned_cols=188 Identities=12% Similarity=-0.009 Sum_probs=142.3
Q ss_pred ECCCCC-EE-EE-ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCE---------
Q ss_conf 478964-56-66-4391599983667862520158955024321589996589973598087430688842---------
Q 000378 29 FHPNQA-LI-AV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--------- 96 (1605)
Q Consensus 29 F~P~ga-ll-A~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~--------- 96 (1605)
+..|.. ++ .+ +.+..|.+||+.||..+..+..+..++.++||| ||..+++...|++|+.||+.+.+.
T Consensus 26 ~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104 (432)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred ECCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECC-CCCEEEEECCCCCEEEEEEECCCCEEEEEEECC
T ss_conf 5478782899997699979999899983999973799713799889-999999982899978998108981288998448
Q ss_pred --------EEEECCCCCCCC--CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCC-CCCCCCCCEEEEEE
Q ss_conf --------897379855211--1258616712478753178122334420187643058998533-44457882276431
Q 000378 97 --------FVLHSPEKKMES--ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDLKKPIVNLACH 165 (1605)
Q Consensus 97 --------~v~~sp~~~~~~--~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i-k~dlkkpV~~LA~~ 165 (1605)
+++|||||+.+. .+.|.++ ++ |+ ..+..++.++.+++..... ..........++++
T Consensus 105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v-------~i--~d----~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 171 (432)
T d1qksa2 105 SEARSIETSKMEGWEDKYAIAGAYWPPQY-------VI--MD----GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171 (432)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEE-------EE--EE----TTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred CCCCCEEEECCCCCCCCEEEEECCCCCEE-------EE--EE----CCCCCCEEEECCCCCCCCCEECCCCCCEEEEEEC
T ss_conf 89877698432188888899981789827-------99--90----7655422540247764352201688850589987
Q ss_pred CCCCEEEEE-ECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC-CCCEEEEEECCC
Q ss_conf 698769998-14862898731343199988522422223302476527830899865-899099632589
Q 000378 166 PRLPVLYVA-YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSI 233 (1605)
Q Consensus 166 P~~~vL~~a-~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dgtl~~W~vs~ 233 (1605)
|+++.++++ +.++.|..|+..+.....+..+. +......++|+|+|.+++++. .+.++..|+...
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~---~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~ 238 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCEEEEEC---CCCCCCCCEECCCCCEEEEECCCCCEEEEEECCC
T ss_conf 899989999816882999984378752279983---3675426538898879999516663677761445
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=9.6e-13 Score=111.89 Aligned_cols=220 Identities=13% Similarity=0.106 Sum_probs=143.9
Q ss_pred CCCCCCCCCCCC---CCCCCCCCCCCEEEECCCCCEEEE--ECCCEEEEEECCCCCEEEECCCCC------CEEEEEECC
Q ss_conf 333122112213---589999999814574789645666--439159998366786252015895------502432158
Q 000378 3 WATVQHLDLRHV---GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDINS------PVVRMAYSP 71 (1605)
Q Consensus 3 W~~~~~~~l~~~---g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~~------~v~~lA~SP 71 (1605)
|++.+...+..+ .++. .|.+++|+|||+++.+ ..+..|.+||..||..+..+.... ....++|||
T Consensus 16 ~D~~s~~~~~~i~~~~~~~----~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~ 91 (337)
T d1pbyb_ 16 IDTEKMAVDKVITIADAGP----TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP 91 (337)
T ss_dssp EETTTTEEEEEEECTTCTT----CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT
T ss_pred EECCCCEEEEEEECCCCCC----CCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 9999994999998778899----823799999989999997899949999999992988872477731254025489868
Q ss_pred CCCCEEEEEE------------CCCCEEEECCCCCCE-----------EEEECCCCCCCCC-CCCCEEEECCCCCCCEE-
Q ss_conf 9996589973------------598087430688842-----------8973798552111-25861671247875317-
Q 000378 72 TSGHAVVAIL------------EDCTIRSCDFDTEQS-----------FVLHSPEKKMESI-SVDTEVHLALTPLQPVV- 126 (1605)
Q Consensus 72 ~~g~~laa~~------------~D~tI~~wd~~~~q~-----------~v~~sp~~~~~~~-s~d~~vh~a~t~~~l~v- 126 (1605)
||..+++.. .+..+..||..+... +++++||++.+.. +.|..+.-..+......
T Consensus 92 -dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~ 170 (337)
T d1pbyb_ 92 -DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp -TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEE
T ss_pred -CCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCEEEEE
T ss_conf -7757999504776203420345552120356677598841456872189986888889997177505663037278886
Q ss_pred ------------------EECCCCCCCEE--------------------EEEEEECCCCC--CCCCCCCCCCCEEEEEEC
Q ss_conf ------------------81223344201--------------------87643058998--533444578822764316
Q 000378 127 ------------------FFGFHRRMSVT--------------------VVGTVEGGRAP--TKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 127 ------------------w~~~~~~~s~~--------------------~vgt~eG~~~~--~~ik~dlkkpV~~LA~~P 166 (1605)
|.......... .+..+..+... ..-...+.+.+..++++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (337)
T d1pbyb_ 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred ECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECC
T ss_conf 14775433113577631401466531246632444103660454036761799986888588898328875058887426
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 98769998148628987313431999885224222233024765278308998658990996325899
Q 000378 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 167 ~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
+...++++ ++.|+.||+.++....++.. ...+.+++|+|||..|++|+.+|+|.+|++.+-
T Consensus 251 ~~~~~~~~--~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 251 AKTRAFGA--YNVLESFDLEKNASIKRVPL-----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TSSEEEEE--ESEEEEEETTTTEEEEEEEC-----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCEEEEEC--CCCEEEEECCCCCEEEEECC-----CCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf 61399973--55289998988969999748-----998899999789999999949992999999987
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=1.2e-13 Score=118.98 Aligned_cols=204 Identities=7% Similarity=-0.098 Sum_probs=141.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEE-----EE-CCCCCCEEEEEECCCCCC
Q ss_conf 333122112213589999999814574789645666-43915999836678625-----20-158955024321589996
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRI-----AS-IDINSPVVRMAYSPTSGH 75 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~-----~~-l~~~~~v~~lA~SP~~g~ 75 (1605)
|+..+.+.++.+..|. .||.++|||||+++++ +-|..|.+||..|+... .. .++...+.+.+||| ||+
T Consensus 47 ~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~ 121 (432)
T d1qksa2 47 IDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDK 121 (432)
T ss_dssp EETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTT
T ss_pred EECCCCCEEEEEECCC----CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCC-CCC
T ss_conf 9899983999973799----71379988999999998289997899810898128899844889877698432188-888
Q ss_pred EE-EEEECCCCEEEECCCCCCE-----------------------EEEECCCCCCCCC--CCCCEEEECCCCCCCEEEEC
Q ss_conf 58-9973598087430688842-----------------------8973798552111--25861671247875317812
Q 000378 76 AV-VAILEDCTIRSCDFDTEQS-----------------------FVLHSPEKKMESI--SVDTEVHLALTPLQPVVFFG 129 (1605)
Q Consensus 76 ~l-aa~~~D~tI~~wd~~~~q~-----------------------~v~~sp~~~~~~~--s~d~~vh~a~t~~~l~vw~~ 129 (1605)
.| ++...|++|++||..+.+. .++++|+++.... +.+++| ++|+
T Consensus 122 ~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i---------~~~d- 191 (432)
T d1qksa2 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI---------LLVD- 191 (432)
T ss_dssp EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE---------EEEE-
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEE---------EEEE-
T ss_conf 899981789827999076554225402477643522016888505899878999899998168829---------9998-
Q ss_pred CCCCCCEEEEEEEE-CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEEEE-CCCCCCCCCE
Q ss_conf 23344201876430-589985334445788227643169876999814-86289873134319998852-2422223302
Q 000378 130 FHRRMSVTVVGTVE-GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTYAVHYTLQL-DNTIKLLGAG 206 (1605)
Q Consensus 130 ~~~~~s~~~vgt~e-G~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~-dg~IR~w~i~t~~v~~tL~~-~~~~~~~g~~ 206 (1605)
..+.+...+.+ .+.. .+..++|+||+..+++++. +..+..++..++...-.+.. ....|..+..
T Consensus 192 ---~~~~~~~~~~~i~~g~----------~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~ 258 (432)
T d1qksa2 192 ---YTDLNNLKTTEISAER----------FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 258 (432)
T ss_dssp ---TTCSSEEEEEEEECCS----------SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred ---CCCCCCCEEEEECCCC----------CCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCC
T ss_conf ---4378752279983367----------542653889887999951666367776144526888721486224567664
Q ss_pred EEEECCCCEEEEEEC-CCCEEEEEECCCC
Q ss_conf 476527830899865-8990996325899
Q 000378 207 AFAFHPTLEWLFVGD-RRGTLLAWDVSIE 234 (1605)
Q Consensus 207 a~Af~P~g~~l~~G~-~dgtl~~W~vs~~ 234 (1605)
.+.....+....... .++++.+|...+.
T Consensus 259 ~~~~~~~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 259 NFVHPTFGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CEECCCCCCEECCCCCCCCEEEECCCCCC
T ss_conf 10148988310213568835876245665
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=9.4e-13 Score=111.99 Aligned_cols=220 Identities=13% Similarity=0.053 Sum_probs=130.3
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCEEEECCCCCEEEE--ECCCEEEEEECCCCCEEEECCCC-------CCEEEEEECC
Q ss_conf 333122112213--589999999814574789645666--43915999836678625201589-------5502432158
Q 000378 3 WATVQHLDLRHV--GRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASIDIN-------SPVVRMAYSP 71 (1605)
Q Consensus 3 W~~~~~~~l~~~--g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l~~~-------~~v~~lA~SP 71 (1605)
|++.+.+.++.+ .++. .|.+++|+|||+.+.+ ..+..|..||..||..+..+... .....++|||
T Consensus 23 ~D~~t~~~~~t~~~~~~~----~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 23 VDVASDTVYKSCVMPDKF----GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 98 (346)
T ss_dssp EETTTTEEEEEEECSSCC----SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred EECCCCCEEEEEECCCCC----CCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEC
T ss_conf 999999899999948999----7045999789899999978999399996756713123103654345477417999905
Q ss_pred CCCCEEEEEE------------CCCCEEEECCCCCCE--------------EEEECCCCCCCCCCCCCEE----------
Q ss_conf 9996589973------------598087430688842--------------8973798552111258616----------
Q 000378 72 TSGHAVVAIL------------EDCTIRSCDFDTEQS--------------FVLHSPEKKMESISVDTEV---------- 115 (1605)
Q Consensus 72 ~~g~~laa~~------------~D~tI~~wd~~~~q~--------------~v~~sp~~~~~~~s~d~~v---------- 115 (1605)
||..+.+.. .|..|+.||..+.+. .+.++++++....+.+..+
T Consensus 99 -DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (346)
T d1jmxb_ 99 -DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177 (346)
T ss_dssp -TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEE
T ss_pred -CCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEECCCCCEEE
T ss_conf -8888999705775215651467624899852563265688731024743999952787899847962699806997899
Q ss_pred ---------EECCCCCCCEEEECCCCCCCEE----------------------EEEEEECCCCC--CCCCCCCCCCCEEE
Q ss_conf ---------7124787531781223344201----------------------87643058998--53344457882276
Q 000378 116 ---------HLALTPLQPVVFFGFHRRMSVT----------------------VVGTVEGGRAP--TKIKTDLKKPIVNL 162 (1605)
Q Consensus 116 ---------h~a~t~~~l~vw~~~~~~~s~~----------------------~vgt~eG~~~~--~~ik~dlkkpV~~L 162 (1605)
.++++|....+|.......... .+..+...... .+...+..+.+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (346)
T d1jmxb_ 178 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257 (346)
T ss_dssp EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred EEECCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEE
T ss_conf 99648986623771255289998649981676512311126732575404783499997778836878763156606888
Q ss_pred EEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCC
Q ss_conf 43169876999814862898731343199988522422223302476527830899865899099632589
Q 000378 163 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 163 A~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+++|+...++... ++.|+.||..++...-++.. ..++.+++|+|||.+|++|+.||+|.+|++.+
T Consensus 258 ~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~-----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 258 LRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-----SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred EEECCCCEEEEEC-CCEEEEEECCCCCEEEEECC-----CCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 9717997899942-98389998999939999749-----99778999968999999994899299999965
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.3e-12 Score=107.69 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=145.2
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 333122112213-589999999814574789645666-439159998366786252015895502432158999658997
Q 000378 3 WATVQHLDLRHV-GRGDHKPLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80 (1605)
Q Consensus 3 W~~~~~~~l~~~-g~~~~~~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~ 80 (1605)
|++.+...++.+ ||.. .|.|++| ++.+|++ +.|..|.+|+..++............ ..++.+ ....++++
T Consensus 40 Wd~~~~~~~~~l~~H~~----~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 111 (293)
T d1p22a2 40 WDKNTLECKRILTGHTG----SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-VLHLRF-NNGMMVTC 111 (293)
T ss_dssp EESSSCCEEEEECCCSS----CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-EEEEEC-CTTEEEEE
T ss_pred EECCCCCEEEEEECCCC----CEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CCCCEEEC
T ss_conf 99999919999926778----7763423--6300210011101100000246410011111100-001111-11000001
Q ss_pred ECCCCEEEECCCCCCE---------------EEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECC
Q ss_conf 3598087430688842---------------8973798552111258616712478753178122334420187643058
Q 000378 81 LEDCTIRSCDFDTEQS---------------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1605)
Q Consensus 81 ~~D~tI~~wd~~~~q~---------------~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~ 145 (1605)
..+..++.||....+. +..+.+.. ....+.|+++ +. |+ ..+...+.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~d~~i-------~~--~d----~~~~~~~~~~~~~ 177 (293)
T d1p22a2 112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-IVSASGDRTI-------KV--WN----TSTCEFVRTLNGH 177 (293)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE-EEEEETTSEE-------EE--EE----TTTCCEEEEEECC
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCE-------EE--EC----CCCCCEEEEECCC
T ss_conf 356630686134454442121000113543110000022-0110699860-------41--00----7888388997155
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCE
Q ss_conf 99853344457882276431698769998148628987313431999885224222233024765278308998658990
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1605)
Q Consensus 146 ~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgt 225 (1605)
.. +|..+.+++ ..|++++.||.||+|++.+.....+... +...+. .+.++..+|++|+.||+
T Consensus 178 ~~----------~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~--~~~~~~~~l~sg~~dg~ 239 (293)
T d1p22a2 178 KR----------GIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEG----HEELVR--CIRFDNKRIVSGAYDGK 239 (293)
T ss_dssp SS----------CEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEE--EEECCSSEEEEEETTSC
T ss_pred CC----------CCCCCCCCC--CEEEEECCCCEEEEEECCCCEEEEEECC----CCEEEE--ECCCCCEEEEEECCCCE
T ss_conf 44----------532216898--7588765899899986655614665214----310000--01454107999867997
Q ss_pred EEEEECC
Q ss_conf 9963258
Q 000378 226 LLAWDVS 232 (1605)
Q Consensus 226 l~~W~vs 232 (1605)
|++|++.
T Consensus 240 i~iwd~~ 246 (293)
T d1p22a2 240 IKVWDLV 246 (293)
T ss_dssp EEEEEHH
T ss_pred EEEEECC
T ss_conf 9999888
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.1e-11 Score=100.16 Aligned_cols=228 Identities=10% Similarity=0.111 Sum_probs=132.5
Q ss_pred CCCCCC---CCCCCCCCCCCCCCCCCEEEECCCCCEEEE--ECCCEEEEEECCCCCEE--E--ECCCCCCEEEEEECCCC
Q ss_conf 333122---112213589999999814574789645666--43915999836678625--2--01589550243215899
Q 000378 3 WATVQH---LDLRHVGRGDHKPLQPHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRI--A--SIDINSPVVRMAYSPTS 73 (1605)
Q Consensus 3 W~~~~~---~~l~~~g~~~~~~~~v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~--~--~l~~~~~v~~lA~SP~~ 73 (1605)
|++... ..++.+.+++ +|++++|||||+.|.+ ..+..|..|+..++... . ...+....+.+++|| |
T Consensus 19 ~~~~~~~~l~~~~~~~~~~----~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-D 93 (333)
T d1ri6a_ 19 WNLNHEGALTLTQVVDVPG----QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-Q 93 (333)
T ss_dssp EEECTTSCEEEEEEEECSS----CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-T
T ss_pred EEECCCCCEEEEEEECCCC----CEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECC-C
T ss_conf 9983999769999975799----8868999589799999977899699999968987079853013699854999959-9
Q ss_pred CCEEEEEEC-CCCEEEECCCCCCE--------------EEEECCCCCCCCC-CCC-CEEE--------------------
Q ss_conf 965899735-98087430688842--------------8973798552111-258-6167--------------------
Q 000378 74 GHAVVAILE-DCTIRSCDFDTEQS--------------FVLHSPEKKMESI-SVD-TEVH-------------------- 116 (1605)
Q Consensus 74 g~~laa~~~-D~tI~~wd~~~~q~--------------~v~~sp~~~~~~~-s~d-~~vh-------------------- 116 (1605)
|..|++..+ +.+|+.|+...... ++.++|+++.... +.+ ..++
T Consensus 94 g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (333)
T d1ri6a_ 94 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT 173 (333)
T ss_dssp SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred CCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEE
T ss_conf 98874205688830220011100000010037785314988630101310256554205689732687410010001334
Q ss_pred --------ECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCC---------CCCCCCCCEEEEEECCCCEEEEE-ECCC
Q ss_conf --------12478753178122334420187643058998533---------44457882276431698769998-1486
Q 000378 117 --------LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI---------KTDLKKPIVNLACHPRLPVLYVA-YADG 178 (1605)
Q Consensus 117 --------~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~i---------k~dlkkpV~~LA~~P~~~vL~~a-~~dg 178 (1605)
+++++-..+++.......+. .|..+......... ..........++++||+..++++ ..++
T Consensus 174 ~~g~~p~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~ 252 (333)
T d1ri6a_ 174 VEGAGPRHMVFHPNEQYAYCVNELNSSV-DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 252 (333)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEE-EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred ECCCCCCEEEEECCCEEEEEECCCCCCE-EEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 0388752799960201478620466721-788510355520210022343068776553126899515672055045688
Q ss_pred EEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEE-ECCCCEEEEEECCCCCCE
Q ss_conf 28987313431999885224222233024765278308998-658990996325899980
Q 000378 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFV-GDRRGTLLAWDVSIERPS 237 (1605)
Q Consensus 179 ~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~-G~~dgtl~~W~vs~~~~~ 237 (1605)
.++.|++.......++.. .+-.......+||+|||++|+| |.++++|.+|++..++-.
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 253 LITVFSVSEDGSVLSKEG-FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp EEEEEEECTTSCCEEEEE-EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred EEEEEEECCCCCEEEEEE-EECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 278788739997899999-96789976289990798999999889993999999799996
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.39 E-value=3.6e-10 Score=91.86 Aligned_cols=156 Identities=13% Similarity=-0.036 Sum_probs=87.2
Q ss_pred CCCEEEECCCCCEEEEE------CCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEC----------CCCE
Q ss_conf 98145747896456664------3915999836678625201589550243215899965899735----------9808
Q 000378 23 QPHEAAFHPNQALIAVA------IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE----------DCTI 86 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a------~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~----------D~tI 86 (1605)
.+.+.+|+|||+.++++ ....|..||+.||+.+..+..+. ...++||| ||..+++... |.+|
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v 99 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAH-SGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCC-CCCEEECC-CCCEEEEEEECCCCCCCCCCCEEE
T ss_conf 8656301899978999734225787659999899997999995798-86079868-999899996057753212453189
Q ss_pred EEECCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 74306888428973798552111258616712478753178122334420187643058998533444578822764316
Q 000378 87 RSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1605)
Q Consensus 87 ~~wd~~~~q~~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P 166 (1605)
+.||..+. +++..+..+..+...-.. ....++++|
T Consensus 100 ~v~D~~t~------------------------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~s~ 134 (373)
T d2madh_ 100 EVFDPVTF------------------------------------------LPIADIELPDAPRFDVGP---YSWMNANTP 134 (373)
T ss_pred EEEECCCC------------------------------------------CEEEEEECCCCCEEEECC---CCCCEEEEE
T ss_conf 99977789------------------------------------------388897268851368516---897089985
Q ss_pred CCCEEEEEEC--CCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEEECCC
Q ss_conf 9876999814--862898731343199988522422223302476527830899-865899099632589
Q 000378 167 RLPVLYVAYA--DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSI 233 (1605)
Q Consensus 167 ~~~vL~~a~~--dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs~ 233 (1605)
|+..+++..+ ++.+..|+..+..+.. +.....+++|+|++..++ +.+.||++..|+...
T Consensus 135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~ 196 (373)
T d2madh_ 135 NNADLLFFQFAAGPAVGLVVQGGSSDDQ--------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG 196 (373)
T ss_pred CCCCEEEEEECCCCCEEEEECCCCEEEE--------EECCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 8993799998698746776236872899--------8245206999628991999994799399997477
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=1.1e-10 Score=95.96 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=21.8
Q ss_pred EECCCCCEEEEEC------CCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEE
Q ss_conf 7478964566643------915999836678625201589550243215899965899
Q 000378 28 AFHPNQALIAVAI------GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA 79 (1605)
Q Consensus 28 aF~P~gallA~a~------g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa 79 (1605)
|.+||++.+.++. ...|.+||+.||+.+.++..+. ...+|||| ||..|++
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-~~~~a~Sp-Dg~~l~v 63 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LPNPVVAD-DGSFIAH 63 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SCEEEECT-TSSCEEE
T ss_pred EECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCC-CCCEEECC-CCCEEEE
T ss_conf 65899999999826647776719999999994999998999-98569948-9999999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=1.2e-10 Score=95.69 Aligned_cols=164 Identities=12% Similarity=0.007 Sum_probs=74.6
Q ss_pred CCEEEECCCCCEE--EE----ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCEE
Q ss_conf 8145747896456--66----43915999836678625201589550243215899965899735980874306888428
Q 000378 24 PHEAAFHPNQALI--AV----AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1605)
Q Consensus 24 v~~~aF~P~gall--A~----a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~ 97 (1605)
+...+..++++.. +. +....|.+||..+|..+..+..+. ...+++|| ||+.+++....
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~sp-Dg~~i~~~~~~-------------- 85 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGH-SGSDFALASTS-------------- 85 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECT-TSSCEEEEEEE--------------
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC-CCCCEECC-CCCEEEEECCC--------------
T ss_conf 666455898761269720457886217997089983778885787-77513989-99889997556--------------
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE-C
Q ss_conf 973798552111258616712478753178122334420187643058998533444578822764316987699981-4
Q 000378 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-A 176 (1605)
Q Consensus 98 v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~-~ 176 (1605)
++ +...++.|.+| +||+ ..+.+++..++.+...-. ..-....++|++||+..||++. .
T Consensus 86 --~~---~~~~g~~d~~v---------~v~D----~~t~~~~~~i~~p~~~~~---~~g~~p~~~a~SpDGk~l~va~~~ 144 (368)
T d1mdah_ 86 --FA---RSAKGKRTDYV---------EVFD----PVTFLPIADIELPDAPRF---SVGPRVHIIGNCASSACLLFFLFG 144 (368)
T ss_dssp --ET---TTTSSSEEEEE---------EEEC----TTTCCEEEEEEETTSCSC---CBSCCTTSEEECTTSSCEEEEECS
T ss_pred --CC---CCCCCCCCCEE---------EEEE----CCCCCEEEEECCCCCCEE---CCCCCCCCEEECCCCCEEEEEECC
T ss_conf --76---40103567869---------9998----999938306437854210---246886405887899899999689
Q ss_pred CCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEEECC
Q ss_conf 862898731343199988522422223302476527830899-86589909963258
Q 000378 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
++.|+.|+++++.+.-++.. .++....|++...+ ..+.||++..|++.
T Consensus 145 ~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 145 SSAAAGLSVPGASDDQLTKS--------ASCFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SSCEEEEEETTTEEEEEEEC--------SSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCEEEEEECCCCCEEEEEEC--------CCCCEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf 98599998998938678604--------67523746998239999489988999826
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.29 E-value=1.8e-09 Score=86.41 Aligned_cols=172 Identities=26% Similarity=0.242 Sum_probs=130.7
Q ss_pred CEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEE-EEEECCCCEEEECCCCCCE-----------EEEEC
Q ss_conf 45666439159998366786252015895502432158999658-9973598087430688842-----------89737
Q 000378 34 ALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQS-----------FVLHS 101 (1605)
Q Consensus 34 allA~a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~l-aa~~~D~tI~~wd~~~~q~-----------~v~~s 101 (1605)
++++.+.+..|.+||..||+.+..+..+.....++||| ||..| ++...|++|+.||+.+.+. .++++
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~ 82 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf 99997899989999999995999998899836999928-98999999789998999999989410320002464311000
Q ss_pred CCCCCCCC--CCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEE-EECCC
Q ss_conf 98552111--2586167124787531781223344201876430589985334445788227643169876999-81486
Q 000378 102 PEKKMESI--SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV-AYADG 178 (1605)
Q Consensus 102 p~~~~~~~--s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~-a~~dg 178 (1605)
++++.... +.+..+ .+|. ..+...+.++..+.. ...++++|++..+++ .+.++
T Consensus 83 ~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~-----------~~~~~~~~dg~~~~~~~~~~~ 138 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTL---------SVID----TTSNTVAGTVKTGKS-----------PLGLALSPDGKKLYVTNNGDK 138 (301)
T ss_dssp TTSSEEEEEETTTTEE---------EEEE----TTTTEEEEEEECSSS-----------EEEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCCCCCCCCCEE---------EECC----CCCCEEEEECCCCCC-----------CEEEEEECCCCEEEEEECCCC
T ss_conf 1111111111111001---------1001----243024320244444-----------237876058971554201111
Q ss_pred EEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC-CCCEEEEEECCCCC
Q ss_conf 2898731343199988522422223302476527830899865-89909963258999
Q 000378 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIER 235 (1605)
Q Consensus 179 ~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dgtl~~W~vs~~~ 235 (1605)
.++.|+..+.....++.. ..+..+++++|++..+++.. .++.+.+|.....+
T Consensus 139 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (301)
T d1l0qa2 139 TVSVINTVTKAVINTVSV-----GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (301)
T ss_dssp EEEEEETTTTEEEEEEEC-----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEECCCCCEEEECCC-----CCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf 001100014630353156-----78842888604654013101211111111111000
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=8.7e-11 Score=96.63 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=66.8
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCC-C--------------EEEEECCCCC-CCC-CCCCCEEEECCC
Q ss_conf 1589550243215899965899735980874306888-4--------------2897379855-211-125861671247
Q 000378 58 IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-Q--------------SFVLHSPEKK-MES-ISVDTEVHLALT 120 (1605)
Q Consensus 58 l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~-q--------------~~v~~sp~~~-~~~-~s~d~~vh~a~t 120 (1605)
-+|...|.+|+||| +|..||+++.|++||.||+.+. . ++++|+|++. .+. ++.|++|
T Consensus 8 ~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v----- 81 (342)
T d1yfqa_ 8 QAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI----- 81 (342)
T ss_dssp SCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE-----
T ss_pred CCCCCCEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE-----
T ss_conf 89989788899958-999999997999299997569986368988558999889999958999789981265311-----
Q ss_pred CCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEE--CC
Q ss_conf 8753178122334420187643058998533444578822764316987699981486289873134319998852--24
Q 000378 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DN 198 (1605)
Q Consensus 121 ~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~--~~ 198 (1605)
+. |. ............+.. .......+.++...+++++.|+.+++|++.++........ ..
T Consensus 82 --~~--w~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~ 144 (342)
T d1yfqa_ 82 --LK--VD----LIGSPSFQALTNNEA---------NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp --EE--EC----SSSSSSEEECBSCCC---------CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred --EE--EE----CCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCC
T ss_conf --45--42----044320000011111---------11111111111111111012221110202344433023000243
Q ss_pred CCCCCCCEEEEECCCCEEEEEECCCCEEEEEECC
Q ss_conf 2222330247652783089986589909963258
Q 000378 199 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 199 ~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
.........+.+.+....+++|+.||++++|++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 178 (342)
T d1yfqa_ 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESS
T ss_pred CCCCCEEEEEEEECCCCCEEEECCCCCEEEEECC
T ss_conf 0012000001000168702465179847887605
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=2e-09 Score=85.97 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=100.3
Q ss_pred EEEE-ECCCEEEEEECCCCCEEEEC---CCCCCEEEEEECCCCCCEE-EEEECCCCEEEECCCCCCE-EEEECCCCCCCC
Q ss_conf 5666-43915999836678625201---5895502432158999658-9973598087430688842-897379855211
Q 000378 35 LIAV-AIGTYIIEFDTLTGSRIASI---DINSPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQS-FVLHSPEKKMES 108 (1605)
Q Consensus 35 llA~-a~g~~I~l~d~~tG~~~~~l---~~~~~v~~lA~SP~~g~~l-aa~~~D~tI~~wd~~~~q~-~v~~sp~~~~~~ 108 (1605)
++++ +-+..|.+||..++..+.++ +.+..+..++||| ||..+ +++..|++|+.||..+.+. .....++.
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~---- 77 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---- 77 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-CCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC----
T ss_conf 99997679989999999994999998778899823799999-9899999978999499999999929888724777----
Q ss_pred CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE------------C
Q ss_conf 1258616712478753178122334420187643058998533444578822764316987699981------------4
Q 000378 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY------------A 176 (1605)
Q Consensus 109 ~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~------------~ 176 (1605)
..+.. .+..++++||+..+|++. .
T Consensus 78 ----------------------------------~~~~~----------~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T d1pbyb_ 78 ----------------------------------EERVK----------SLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp ----------------------------------TEEEE----------CTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred ----------------------------------CCCCC----------CEEEEEECCCCCEEEEEECCCCCEEEECCCC
T ss_conf ----------------------------------31254----------0254898687757999504776203420345
Q ss_pred CCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCC
Q ss_conf 862898731343199988522422223302476527830899865899099632589
Q 000378 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~ 233 (1605)
+..+..|+..++.+..++.. ...+..++|+|+|.++++++.+ +..|+..+
T Consensus 114 ~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~ 163 (337)
T d1pbyb_ 114 PTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGLGRD--LHVMDPEA 163 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEESSS--EEEEETTT
T ss_pred CCCEEECCCCCCEEEEECCC-----CCCCEEEEECCCCCEEEEECCC--CCEEEEEC
T ss_conf 55212035667759884145-----6872189986888889997177--50566303
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.18 E-value=1.7e-08 Score=78.68 Aligned_cols=70 Identities=9% Similarity=-0.054 Sum_probs=36.1
Q ss_pred EEEEECCCCEEEEE----------ECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEE--EEEECCCCEEEE
Q ss_conf 76431698769998----------148628987313431999885224222233024765278308--998658990996
Q 000378 161 NLACHPRLPVLYVA----------YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW--LFVGDRRGTLLA 228 (1605)
Q Consensus 161 ~LA~~P~~~vL~~a----------~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~--l~~G~~dgtl~~ 228 (1605)
.++++|++..++.. ..++.|+.|++.++...-++. +-.++.+++|+|||+. +++++.|++|.+
T Consensus 271 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-----~~~~~~~~a~spDG~~~l~vt~~~d~~v~v 345 (373)
T d2madh_ 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAGTEVLHI 345 (373)
T ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-----CCCCEEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf 357714997599954888247862589869999899996989866-----899825899998999899999679992999
Q ss_pred EECCCCC
Q ss_conf 3258999
Q 000378 229 WDVSIER 235 (1605)
Q Consensus 229 W~vs~~~ 235 (1605)
||+.+-+
T Consensus 346 ~D~~tg~ 352 (373)
T d2madh_ 346 YDAGAGD 352 (373)
T ss_pred EECCCCC
T ss_conf 9999998
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.5e-08 Score=79.24 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=82.6
Q ss_pred EEECCCEEEEEECCCCCE---EEECCCCCCEEEEEECCCCCCEE-EEEECCCCEEEECCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 664391599983667862---52015895502432158999658-99735980874306888428973798552111258
Q 000378 37 AVAIGTYIIEFDTLTGSR---IASIDINSPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVD 112 (1605)
Q Consensus 37 A~a~g~~I~l~d~~tG~~---~~~l~~~~~v~~lA~SP~~g~~l-aa~~~D~tI~~wd~~~~q~~v~~sp~~~~~~~s~d 112 (1605)
+.+.+..|.+||..+... +..++++..+..||||| ||..| ++...|++|+.|+++....
T Consensus 9 ~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~---------------- 71 (333)
T d1ri6a_ 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDG---------------- 71 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTC----------------
T ss_pred ECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEC-CCCEEEEEECCCCEEEEEEEECCCC----------------
T ss_conf 87899938999983999769999975799886899958-9799999977899699999968987----------------
Q ss_pred CEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCEEE
Q ss_conf 616712478753178122334420187643058998533444578822764316987699981-4862898731343199
Q 000378 113 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVH 191 (1605)
Q Consensus 113 ~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~-~dg~IR~w~i~t~~v~ 191 (1605)
.. ++ ++....+. .+.+++++||+..||++. .++.|+.|+..+....
T Consensus 72 -~~-------~~--------------~~~~~~~~-----------~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~ 118 (333)
T d1ri6a_ 72 -AL-------TF--------------AAESALPG-----------SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 118 (333)
T ss_dssp -CE-------EE--------------EEEEECSS-----------CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred -CE-------EE--------------EEECCCCC-----------CCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCE
T ss_conf -07-------98--------------53013699-----------85499995999887420568883022001110000
Q ss_pred EEEEECCCCCCCCCEEEEECCCCEEEEEEC-CCCEEEEEECCCCC
Q ss_conf 988522422223302476527830899865-89909963258999
Q 000378 192 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIER 235 (1605)
Q Consensus 192 ~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dgtl~~W~vs~~~ 235 (1605)
..... .-+..++.+++|+|++..+++++ .+.++..|+.....
T Consensus 119 ~~~~~--~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 119 GVVDV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp EEEEE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ECCCC--CCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCC
T ss_conf 00100--37785314988630101310256554205689732687
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.14 E-value=2.5e-09 Score=85.33 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=55.3
Q ss_pred EEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE--CCCCCCEEEEEECCCCCCE-EEEEECCCCEEEECCCCC
Q ss_conf 4574789645666-4391599983667862520--1589550243215899965-899735980874306888
Q 000378 26 EAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS--IDINSPVVRMAYSPTSGHA-VVAILEDCTIRSCDFDTE 94 (1605)
Q Consensus 26 ~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~--l~~~~~v~~lA~SP~~g~~-laa~~~D~tI~~wd~~~~ 94 (1605)
.+||++++.+|++ +-+..|.+||+.|++.+.+ +.++.....++||| ||.. ++++..|++|+.||+.+.
T Consensus 1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~ 72 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTC 72 (346)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECC-CCCEEEEEECCCCCEEEEECCCC
T ss_conf 9558899969999869997999999999899999948999704599978-98999999789993999967567
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.03 E-value=1.6e-08 Score=78.99 Aligned_cols=218 Identities=13% Similarity=0.148 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-----------CCEEEEEECCCCCEEEECC--------CCCC
Q ss_conf 33312211221358999999981457478964566643-----------9159998366786252015--------8955
Q 000378 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAI-----------GTYIIEFDTLTGSRIASID--------INSP 63 (1605)
Q Consensus 3 W~~~~~~~l~~~g~~~~~~~~v~~~aF~P~gallA~a~-----------g~~I~l~d~~tG~~~~~l~--------~~~~ 63 (1605)
|++...+.++.+ +++ ....++|||||+.|+++. +..|.+||+.||..+..+. .+..
T Consensus 33 ~D~~tg~~~~~~-~~g----~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~ 107 (355)
T d2bbkh_ 33 IDGEAGRVIGMI-DGG----FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY 107 (355)
T ss_dssp EETTTTEEEEEE-EEC----SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred EECCCCCEEEEE-ECC----CCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCC
T ss_conf 999999499999-899----998569948999999996777642015899989999999997988980588640311798
Q ss_pred EEEEEECCCCCCEEEEE--ECCCCEEEECCCCCCE-------------------EEEECCCCCCCCC--CCCCEEEECCC
Q ss_conf 02432158999658997--3598087430688842-------------------8973798552111--25861671247
Q 000378 64 VVRMAYSPTSGHAVVAI--LEDCTIRSCDFDTEQS-------------------FVLHSPEKKMESI--SVDTEVHLALT 120 (1605)
Q Consensus 64 v~~lA~SP~~g~~laa~--~~D~tI~~wd~~~~q~-------------------~v~~sp~~~~~~~--s~d~~vh~a~t 120 (1605)
...++||| ||..+... ..+..++.||..+... .+++++|++.+.. ..+.++..-.+
T Consensus 108 ~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~ 186 (355)
T d2bbkh_ 108 PWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186 (355)
T ss_dssp GGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred CCEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 73499933-88715773279882045430578837667705874047306996369993899989998347873799962
Q ss_pred C------------------CCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCC------------CCCCEEEEEECCCCE
Q ss_conf 8------------------7531781223344201876430589985334445------------788227643169876
Q 000378 121 P------------------LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL------------KKPIVNLACHPRLPV 170 (1605)
Q Consensus 121 ~------------------~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dl------------kkpV~~LA~~P~~~v 170 (1605)
. -..++|....+ ...++ .+.+++. ..+++.- -.....++++|++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~ 262 (355)
T d2bbkh_ 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTG--KIHQI-DLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262 (355)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEEEBTTS--EEEEE-ECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCCCCEECCEEEECCCCCCCCEEEEECCCC--EEEEE-ECCCCCE-EEEECCCCCCCCEEEEEEECCCEEEEEEECCCCE
T ss_conf 433300011061021538997388746998--29999-6589907-9984457844126854330351089998079976
Q ss_pred EEEEECCC----------EEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEE-E-EEECCCCEEEEEECCCCC
Q ss_conf 99981486----------28987313431999885224222233024765278308-9-986589909963258999
Q 000378 171 LYVAYADG----------LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW-L-FVGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 171 L~~a~~dg----------~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~-l-~~G~~dgtl~~W~vs~~~ 235 (1605)
+|+++.++ .|+.|+..++.+.-++.. ...+.+++|+|||+. + +++..+++|.+||+.+-+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-----~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-----CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCC
T ss_conf 788740687126517997599986788849899668-----998779999289996999997899989999999998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.79 E-value=3e-06 Score=61.22 Aligned_cols=192 Identities=17% Similarity=0.091 Sum_probs=103.6
Q ss_pred CCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEE---CCCCCCEEEEEECCCCCCEE---EEEECCCCEEEECCCC---
Q ss_conf 98145747896456664391599983667862520---15895502432158999658---9973598087430688---
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIAS---IDINSPVVRMAYSPTSGHAV---VAILEDCTIRSCDFDT--- 93 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~---l~~~~~v~~lA~SP~~g~~l---aa~~~D~tI~~wd~~~--- 93 (1605)
.+.-++|||++++|-++.+..+..|.......+.. ...+...+.++++| ++..+ ++-...++|..+.+..
T Consensus 41 ~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~~~ 119 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCEEEECCCCCEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCEEEEECC-CCCEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 9777999489899999938947899990899769876412899867899878-998799999327997899867457887
Q ss_pred -----------C---------------CEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEE--CC
Q ss_conf -----------8---------------4289737985521112586167124787531781223344201876430--58
Q 000378 94 -----------E---------------QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE--GG 145 (1605)
Q Consensus 94 -----------~---------------q~~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~e--G~ 145 (1605)
. --+++|+|||+.+-....+.- +.|+|. +........++.+. ..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d-------~v~~~~-~~~~g~~~~~~~~~~~~~ 191 (365)
T d1jofa_ 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN-------KLWTHR-KLASGEVELVGSVDAPDP 191 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT-------EEEEEE-ECTTSCEEEEEEEECSST
T ss_pred CCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCC-------EEEEEE-CCCCCCEEECCCEEECCC
T ss_conf 420686640330047646755688981159788899998998207998-------799997-068871665251111278
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEE--EEEEECCCC-------------CCCCCEEEE
Q ss_conf 9985334445788227643169876999814-862898731343199--988522422-------------223302476
Q 000378 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTYAVH--YTLQLDNTI-------------KLLGAGAFA 209 (1605)
Q Consensus 146 ~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~-dg~IR~w~i~t~~v~--~tL~~~~~~-------------~~~g~~a~A 209 (1605)
.. -.+.++|||+++.+|+..+ ++.|..|++...... .+.+--+.+ ....+..++
T Consensus 192 g~----------gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 261 (365)
T d1jofa_ 192 GD----------HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp TC----------CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred CC----------CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 87----------40899988998669995158998999995598753778731240245565566654444357763169
Q ss_pred ECCCCEEEEEECC------CCEEEEEECCC
Q ss_conf 5278308998658------99099632589
Q 000378 210 FHPTLEWLFVGDR------RGTLLAWDVSI 233 (1605)
Q Consensus 210 f~P~g~~l~~G~~------dgtl~~W~vs~ 233 (1605)
++|+|++|++..| .+.|..|.+..
T Consensus 262 ~spdG~~lyvsnr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 262 LTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred ECCCCCEEEEECCCCCCCCCEEEEEEEECC
T ss_conf 989999789971357875422799998568
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.73 E-value=1.3e-07 Score=71.93 Aligned_cols=204 Identities=10% Similarity=0.063 Sum_probs=106.0
Q ss_pred CEEEECCCCCEEEEEC-----------CCEEEEEECCCCCEEEECC--------CCCCEEEEEECCCCCCEE-EEEECCC
Q ss_conf 1457478964566643-----------9159998366786252015--------895502432158999658-9973598
Q 000378 25 HEAAFHPNQALIAVAI-----------GTYIIEFDTLTGSRIASID--------INSPVVRMAYSPTSGHAV-VAILEDC 84 (1605)
Q Consensus 25 ~~~aF~P~gallA~a~-----------g~~I~l~d~~tG~~~~~l~--------~~~~v~~lA~SP~~g~~l-aa~~~D~ 84 (1605)
..++|+|||+.|+++- +..|.+||..|++.+..+. .+.....++||| ||..+ ++...++
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~ 146 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS 146 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred CCCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECC-CCCEEEEEECCCC
T ss_conf 751398999889997556764010356786999989999383064378542102468864058878-9989999968998
Q ss_pred CEEEECCCCCCE-------------------EEEECCCCCCCCC-CCCCEEEECC--CC--------CC-------CEEE
Q ss_conf 087430688842-------------------8973798552111-2586167124--78--------75-------3178
Q 000378 85 TIRSCDFDTEQS-------------------FVLHSPEKKMESI-SVDTEVHLAL--TP--------LQ-------PVVF 127 (1605)
Q Consensus 85 tI~~wd~~~~q~-------------------~v~~sp~~~~~~~-s~d~~vh~a~--t~--------~~-------l~vw 127 (1605)
+|..||..+.+. .+++++|+++... ..+.....-. .+ .. -+.+
T Consensus 147 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp CEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEE
T ss_conf 59999899893867860467523746998239999489988999826896266653031113566646601015586899
Q ss_pred ECCCCC--------CCEEEEEEEECCCCCCCCCCCC-CCCCEEEEEECCCCEEEEEECCC---------EEEEEECCCCE
Q ss_conf 122334--------4201876430589985334445-78822764316987699981486---------28987313431
Q 000378 128 FGFHRR--------MSVTVVGTVEGGRAPTKIKTDL-KKPIVNLACHPRLPVLYVAYADG---------LIRAYNIHTYA 189 (1605)
Q Consensus 128 ~~~~~~--------~s~~~vgt~eG~~~~~~ik~dl-kkpV~~LA~~P~~~vL~~a~~dg---------~IR~w~i~t~~ 189 (1605)
+...+. ....++.+..+... ..++.+. .-....+|++|++..+|++..++ .|+.||..++.
T Consensus 227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 227 WAVASSILQGDIPAAGATMKAAIDGNES-GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp ECBSSCCEEEECCSSCCEEECCCCSSCT-HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCCC-EEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCC
T ss_conf 9348977999606993699760246543-045540127883568871799879998358973340588649999899994
Q ss_pred EEEEEEECCCCCCCCCEEEEECCCCEE-EE-EECCCCEEEEEECCCCC
Q ss_conf 999885224222233024765278308-99-86589909963258999
Q 000378 190 VHYTLQLDNTIKLLGAGAFAFHPTLEW-LF-VGDRRGTLLAWDVSIER 235 (1605)
Q Consensus 190 v~~tL~~~~~~~~~g~~a~Af~P~g~~-l~-~G~~dgtl~~W~vs~~~ 235 (1605)
+..++.. ...+.+++|+|||+. ++ ++..+++|.+||..+-+
T Consensus 306 ~~~~~~~-----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 306 TSGPISN-----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEECCEE-----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEEEECC-----CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCC
T ss_conf 8689558-----996517999989998999994899969999899997
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.71 E-value=2.4e-07 Score=69.83 Aligned_cols=114 Identities=4% Similarity=-0.058 Sum_probs=55.2
Q ss_pred EEEEECCCCEEEECCCCCC---EEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 8997359808743068884---2897379855211125861671247875317812233442018764305899853344
Q 000378 77 VVAILEDCTIRSCDFDTEQ---SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1605)
Q Consensus 77 laa~~~D~tI~~wd~~~~q---~~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~ 153 (1605)
.+++.+++.|+.||+-+.+ +--.|+||+..--+..+.+. +. +.. ....-...+|.+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~-------~v--l~~------~~~~~~gd~hhP------ 72 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESK-------EI--LGG------DQQYLNGDCHHP------ 72 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHH-------HH--HCS------SSCCSCCCBCCC------
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCC-------EE--EEC------CCCCCCCCCCCC------
T ss_conf 996887774899967898079999767578987999888650-------47--831------332256755677------
Q ss_pred CCCCCCEEEEEECCCCEEEEE-ECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE
Q ss_conf 457882276431698769998-14862898731343199988522422223302476527830899
Q 000378 154 DLKKPIVNLACHPRLPVLYVA-YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF 218 (1605)
Q Consensus 154 dlkkpV~~LA~~P~~~vL~~a-~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~ 218 (1605)
.+....++||+.+||++ ..+..|..+++.++++.-++... ...+...++|+||+.+++
T Consensus 73 ----~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP---~g~gphgi~~spdg~t~Y 131 (441)
T d1qnia2 73 ----HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP---NVQAIHGLRLQKVPKTNY 131 (441)
T ss_dssp ----EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT---TCCCEEEEEECCSSBCCE
T ss_pred ----CCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECC---CCCCCCCEEEECCCCEEE
T ss_conf ----72210326888889997389997999988778475579567---887864348705699899
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.66 E-value=3.5e-06 Score=60.69 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=51.2
Q ss_pred CCEEEEEECCCCEEEEEEC-CCEEEEEECCC-CEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEEECCCC
Q ss_conf 8227643169876999814-86289873134-3199988522422223302476527830899-8658990996325899
Q 000378 158 PIVNLACHPRLPVLYVAYA-DGLIRAYNIHT-YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 158 pV~~LA~~P~~~vL~~a~~-dg~IR~w~i~t-~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs~~ 234 (1605)
-+.+++|+||+..||++.. ...|+.|++.. +.....-..+..-...|.+.++|||++.+++ +...++++..|++...
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 11597888999989982079987999970688716652511112788740899988998669995158998999995598
Q ss_pred CC
Q ss_conf 98
Q 000378 235 RP 236 (1605)
Q Consensus 235 ~~ 236 (1605)
.-
T Consensus 226 ~~ 227 (365)
T d1jofa_ 226 TH 227 (365)
T ss_dssp TC
T ss_pred CC
T ss_conf 75
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.57 E-value=6.2e-06 Score=58.78 Aligned_cols=162 Identities=10% Similarity=0.058 Sum_probs=105.2
Q ss_pred CCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEECC------CCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCE
Q ss_conf 9814574789645666439159998366786252015------8955024321589996589973598087430688842
Q 000378 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASID------INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~------~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~ 96 (1605)
....+.|.+++.++.... ..|.+||+.||.....+. +...+.+..||| ||..|+....+ .+.|..
T Consensus 18 ~~~~~~W~~d~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~--~~~~r~----- 88 (470)
T d2bgra1 18 KLYSLRWISDHEYLYKQE-NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNY--VKQWRH----- 88 (470)
T ss_dssp CCCCCEECSSSEEEEESS-SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEE--EECSSS-----
T ss_pred CCCCCEECCCCEEEEECC-CCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECC-CCCEEEEEECC--CCEEEE-----
T ss_conf 565789689997999759-949999889997899970156443167654059989-88979999777--100010-----
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf 89737985521112586167124787531781223344201876430589985334445788227643169876999814
Q 000378 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1605)
Q Consensus 97 ~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a~~ 176 (1605)
|.++++ |+|. ..+.... ++.++.. .+....||||+..++..+
T Consensus 89 -------------s~~~~~---------~l~d----~~~~~~~-~l~~~~~----------~~~~~~~SPDG~~ia~~~- 130 (470)
T d2bgra1 89 -------------SYTASY---------DIYD----LNKRQLI-TEERIPN----------NTQWVTWSPVGHKLAYVW- 130 (470)
T ss_dssp -------------CEEEEE---------EEEE----TTTTEEC-CSSCCCT----------TEEEEEECSSTTCEEEEE-
T ss_pred -------------CCCCEE---------EEEE----CCCCCCC-CCCCCCC----------CCCCCCCCCCCCEEEEEE-
T ss_conf -------------467349---------9998----9888513-1246874----------231010146764135751-
Q ss_pred CCEEEEEECCCCEEEEEEEE-CCCC-------------CCCCCEEEEECCCCEEEEEECCCCE-EEEEEC
Q ss_conf 86289873134319998852-2422-------------2233024765278308998658990-996325
Q 000378 177 DGLIRAYNIHTYAVHYTLQL-DNTI-------------KLLGAGAFAFHPTLEWLFVGDRRGT-LLAWDV 231 (1605)
Q Consensus 177 dg~IR~w~i~t~~v~~tL~~-~~~~-------------~~~g~~a~Af~P~g~~l~~G~~dgt-l~~W~v 231 (1605)
|+.+..|+..++........ .+.+ ......++.|+|||+.|+....|.+ +..|.+
T Consensus 131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEE
T ss_conf 4641379889994653210147774053543201121004776530799998722026863776706998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.46 E-value=4.8e-06 Score=59.66 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=65.6
Q ss_pred CCCCCEEEEEECCCCEEEEEEC---------CCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCE
Q ss_conf 5788227643169876999814---------8628987313431999885224222233024765278308998658990
Q 000378 155 LKKPIVNLACHPRLPVLYVAYA---------DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1605)
Q Consensus 155 lkkpV~~LA~~P~~~vL~~a~~---------dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgt 225 (1605)
+.+.|.+..||||+..|+.++. ++.+.+|+++++... ++.. +-.++....|+|||++++. .+++.
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~----~~~~~~~~~~SPDG~~ia~-~~~~~ 133 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEER----IPNNTQWVTWSPVGHKLAY-VWNND 133 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSC----CCTTEEEEEECSSTTCEEE-EETTE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCC-CCCC----CCCCCCCCCCCCCCCEEEE-EECCC
T ss_conf 1676540599898897999977710001046734999989888513-1246----8742310101467641357-51464
Q ss_pred EEEEECCCCCCEEEEECC
Q ss_conf 996325899980463036
Q 000378 226 LLAWDVSIERPSMIGMDG 243 (1605)
Q Consensus 226 l~~W~vs~~~~~m~g~~g 243 (1605)
+.+|++.......+-.++
T Consensus 134 l~~~~~~~g~~~~~t~~~ 151 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTG 151 (470)
T ss_dssp EEEESSTTSCCEECCSCC
T ss_pred CEEEECCCCCEEEEEECC
T ss_conf 137988999465321014
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.29 E-value=0.00018 Score=47.38 Aligned_cols=202 Identities=10% Similarity=-0.003 Sum_probs=117.8
Q ss_pred CCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCC---CE
Q ss_conf 999814574789645666-43915999836678625201589550243215899965899735980874306888---42
Q 000378 21 PLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE---QS 96 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~---q~ 96 (1605)
+..++.+||+|||.++++ ..+..|..||.. |...........+..+||+| ||.++++...+..+..|++... ..
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCCCCCEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCEEEECC-CCCEEEEECCCCEEEEEEECCCCCCEE
T ss_conf 9884787799998899996889989999089-98899971799853689867-788699832895378887101111012
Q ss_pred EEEECCCCCCCC---CCCCCEEEECCCC-CCCEEEECCCCCCCEE-EEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 897379855211---1258616712478-7531781223344201-8764305899853344457882276431698769
Q 000378 97 FVLHSPEKKMES---ISVDTEVHLALTP-LQPVVFFGFHRRMSVT-VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1605)
Q Consensus 97 ~v~~sp~~~~~~---~s~d~~vh~a~t~-~~l~vw~~~~~~~s~~-~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL 171 (1605)
.+...+++.... ...|+.+-.+... -+.|.+. ..+.. .+-...+...++..-.++. ....+++.. ..+.
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~ngi~~~~-~~l~ 178 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLID----VVQPSGSIWLEHPMLARSNSESVFP-AANGLKRFG-NFLY 178 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEE----TTTTEEEEEEECGGGSCSSTTCCSC-SEEEEEEET-TEEE
T ss_pred ECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEE----CCCCCCEEEECCCCCCEEECCCCCC-CCCCCCCCC-CCEE
T ss_conf 102357863221667715797875035655410242----1687303675188640143157632-243201169-8304
Q ss_pred EEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECC
Q ss_conf 9981486289873134319998852242222330247652783089986589909963258
Q 000378 172 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 172 ~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
++.+..+.|..+++.........+. .........++|.++|.+.++...++++..+.-.
T Consensus 179 ~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 179 VSNTEKMLLLRIPVDSTDKPGEPEI--FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEE--EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EECCCCCEEEECCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCEEEEECCCCCEEEECCC
T ss_conf 4037887698634433332345310--1589987523787999999997489918998789
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.07 E-value=0.00036 Score=45.03 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=10.2
Q ss_pred EEEEEECCCCCCEEEEEECCCCEEEECCC
Q ss_conf 02432158999658997359808743068
Q 000378 64 VVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 64 v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
+..+|++| ||.++++...+.+|+.||.+
T Consensus 30 ~e~iAv~p-dG~l~vt~~~~~~I~~i~p~ 57 (302)
T d2p4oa1 30 LENLASAP-DGTIFVTNHEVGEIVSITPD 57 (302)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred CCCEEECC-CCCEEEEECCCCEEEEEECC
T ss_conf 47877999-98899996889989999089
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.05 E-value=2.7e-06 Score=61.58 Aligned_cols=179 Identities=7% Similarity=-0.116 Sum_probs=86.2
Q ss_pred CCEEEECCCCCEEEE--ECCCEEEEEECCCCCEEEEC--CCCCCEEEEEECCCCCCE--EEEEECCCC------------
Q ss_conf 814574789645666--43915999836678625201--589550243215899965--899735980------------
Q 000378 24 PHEAAFHPNQALIAV--AIGTYIIEFDTLTGSRIASI--DINSPVVRMAYSPTSGHA--VVAILEDCT------------ 85 (1605)
Q Consensus 24 v~~~aF~P~gallA~--a~g~~I~l~d~~tG~~~~~l--~~~~~v~~lA~SP~~g~~--laa~~~D~t------------ 85 (1605)
..+..++|||++|-+ ..+.+|..+|..|++...++ -.+...+.++||| +|.+ +++..++..
T Consensus 74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~ 152 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLD 152 (441)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred CCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 2210326888889997389997999988778475579567887864348705-699899995667754436766300145
Q ss_pred -----EEEECCCCCC-----------EEEEECCCCCCCCC-CCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf -----8743068884-----------28973798552111-258616712478753178122334420187643058998
Q 000378 86 -----IRSCDFDTEQ-----------SFVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 86 -----I~~wd~~~~q-----------~~v~~sp~~~~~~~-s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~ 148 (1605)
+.-+|..+.. ..+.++|||+..-. +.+++. -. ++. .++...++++.-+.-
T Consensus 153 ~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~-------~~-~id----~~t~~~~d~i~v~n~- 219 (441)
T d1qnia2 153 NSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSER-------AV-DLA----GTMRNDRDWVVVFNV- 219 (441)
T ss_dssp GEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTC-------CS-SHH----HHTCSSBCEEEEEEH-
T ss_pred CCCCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCEEEEEECCCCC-------EE-EEE----CCCCCEEEEEEECCC-
T ss_conf 55323886637556064787369986546987999989998517873-------18-985----157121789996885-
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEE
Q ss_conf 5334445788227643169876999814862898731343199988522422223302476527830899-865899099
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLL 227 (1605)
Q Consensus 149 ~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~ 227 (1605)
-...+++|++..++++. ++.+..+...+..+.+++.. .- ....++++|||+.++ .|..++|+.
T Consensus 220 ----------p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPv----gk-sPhGv~vSPDGkyl~~~~~~~~tvs 283 (441)
T d1qnia2 220 ----------ERIAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPV----PK-NPHGLNTSPDGKYFIANGKLSPTVS 283 (441)
T ss_dssp ----------HHHHHHHHTTCCBCCTT-CCCCEEECSSSCSSEEEECC----BS-SCCCEEECTTSCEEEEECTTSSBEE
T ss_pred ----------CCEEEEECCCCEEEECC-CCCEEEECCCCCCEEEEEEC----CC-CCCCCEECCCCCEEEEECCCCCCEE
T ss_conf ----------11079966999999699-98289980368706899717----98-8667268999878999077599389
Q ss_pred EEECC
Q ss_conf 63258
Q 000378 228 AWDVS 232 (1605)
Q Consensus 228 ~W~vs 232 (1605)
.|++.
T Consensus 284 v~d~~ 288 (441)
T d1qnia2 284 VIAID 288 (441)
T ss_dssp EEEGG
T ss_pred EEEEE
T ss_conf 99832
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=0.0015 Score=40.25 Aligned_cols=184 Identities=12% Similarity=0.045 Sum_probs=104.7
Q ss_pred CCCEEEECCCCCEEEE-EC---CCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEC-CCCEEEECCCCC--C
Q ss_conf 9814574789645666-43---915999836678625201589550243215899965899735-980874306888--4
Q 000378 23 QPHEAAFHPNQALIAV-AI---GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-DCTIRSCDFDTE--Q 95 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~---g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~-D~tI~~wd~~~~--q 95 (1605)
.+...+|||||+.||- +. ...+...+..++................+|| +|..++.... ++....+..... .
T Consensus 40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 40 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCEECC-CCCEEEEEEECCCCCCEEECCCCCCC
T ss_conf 42603887899989999815267513443113675067764202454302448-89864676402786410000222122
Q ss_pred E-----------EEEECCCCCCCCC-C-CCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 2-----------8973798552111-2-5861671247875317812233442018764305899853344457882276
Q 000378 96 S-----------FVLHSPEKKMESI-S-VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1605)
Q Consensus 96 ~-----------~v~~sp~~~~~~~-s-~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~L 162 (1605)
. ....+++++.... + .++.. ..++.. +.+ ......+.........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~i~~~~-------------~~~--~~~~~~~~~~~~~~~~ 176 (269)
T d2hqsa1 119 IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP-------QVYKVN-------------ING--GAPQRITWEGSQNQDA 176 (269)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEECTTSSC-------EEEEEE-------------TTS--SCCEECCCSSSEEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCEECCCCCCCC-------EEEEEE-------------CCC--CCCEEEECCCCCCCCC
T ss_conf 000010144211454345544330000126874-------386542-------------133--1000100012222343
Q ss_pred EEECCCCEEEEEECCC---EEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCC--EEEEEECCCCC
Q ss_conf 4316987699981486---2898731343199988522422223302476527830899-865899--09963258999
Q 000378 163 ACHPRLPVLYVAYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRG--TLLAWDVSIER 235 (1605)
Q Consensus 163 A~~P~~~vL~~a~~dg---~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dg--tl~~W~vs~~~ 235 (1605)
+++|++..++..+.++ .|..++....... ++. +........|+|||++|+ +..+++ .|.+|++....
T Consensus 177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~----~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLS----STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECC----CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEECCCCCCE--EEE----CCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCC
T ss_conf 22345430577860588012567603564405--850----68654455898999999999817998479999999997
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.46 E-value=0.0037 Score=37.18 Aligned_cols=197 Identities=13% Similarity=0.076 Sum_probs=105.6
Q ss_pred CCCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCC----CEEEECCCCC
Q ss_conf 999814574789645666-4391599983667862520-158955024321589996589973598----0874306888
Q 000378 21 PLQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDC----TIRSCDFDTE 94 (1605)
Q Consensus 21 ~~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~----tI~~wd~~~~ 94 (1605)
.+..++++|.++|.|..+ ..+..|.-||..++..... .........|+++| ||.++++...|. .|...|..+.
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCCCEEEEEECCCCC
T ss_conf 86747078999999999977999999998999959999948998703899999-99999995689731104998738996
Q ss_pred CEEEEECCCCCC-----CCCCCCCEEEECCCCCCCEEEECCCCCCCE---EEEEEEEC-CCCCCCCCCCCCCCCEEEEEE
Q ss_conf 428973798552-----111258616712478753178122334420---18764305-899853344457882276431
Q 000378 95 QSFVLHSPEKKM-----ESISVDTEVHLALTPLQPVVFFGFHRRMSV---TVVGTVEG-GRAPTKIKTDLKKPIVNLACH 165 (1605)
Q Consensus 95 q~~v~~sp~~~~-----~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~---~~vgt~eG-~~~~~~ik~dlkkpV~~LA~~ 165 (1605)
.......+.... ++...++. + |++-...... ..+..+.. ++..+.+-.++..| ..+|++
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~---------l--~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p-nGia~s 185 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGG---------F--YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA-NGIALS 185 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSC---------E--EEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE-EEEEEC
T ss_pred EEEEECCCCCCCCCCCCEEEEECCC---------E--EECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEE-EEEEEC
T ss_conf 3644426777555875226773065---------3--200135400257421578841663357886123301-000101
Q ss_pred CCCCEEEEE-ECCCEEEEEECCC-CEEEEEEEECCCCC---CCCCEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 698769998-1486289873134-31999885224222---23302476527830899865899099632
Q 000378 166 PRLPVLYVA-YADGLIRAYNIHT-YAVHYTLQLDNTIK---LLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 166 P~~~vL~~a-~~dg~IR~w~i~t-~~v~~tL~~~~~~~---~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
||+..||++ +..+.|+.|++.. +.........-... ..+---+++.++|.+.++-...++|..++
T Consensus 186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~ 255 (319)
T d2dg1a1 186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN 255 (319)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEC
T ss_conf 2221278740468914799976998362024633331257764103641738999999984899899997
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.34 E-value=0.005 Score=36.13 Aligned_cols=197 Identities=10% Similarity=0.042 Sum_probs=113.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEEEEE--CCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 1122135899999998145747896456664--391599983667862520-1589550243215899965899735980
Q 000378 9 LDLRHVGRGDHKPLQPHEAAFHPNQALIAVA--IGTYIIEFDTLTGSRIAS-IDINSPVVRMAYSPTSGHAVVAILEDCT 85 (1605)
Q Consensus 9 ~~l~~~g~~~~~~~~v~~~aF~P~gallA~a--~g~~I~l~d~~tG~~~~~-l~~~~~v~~lA~SP~~g~~laa~~~D~t 85 (1605)
+.+-.+.+.. .|+++|+.++|.+..+. -+..|.-++..+...... ..-......+|++| +|++.++...+..
T Consensus 5 ~~~~~~~~~~----~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~ 79 (260)
T d1rwia_ 5 LPFTGIDFRL----SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRV 79 (260)
T ss_dssp CCCCSCCSCC----CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEE
T ss_pred EECCCCCCCC----CCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECC-CCCEEEEEEEECE
T ss_conf 7315577769----8788999699999999718998899993899668974369866840899938-9988986310000
Q ss_pred EEEECCCCCCE-----------EEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEEC-CCCCCC-CC
Q ss_conf 87430688842-----------897379855211125861671247875317812233442018764305-899853-34
Q 000378 86 IRSCDFDTEQS-----------FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG-GRAPTK-IK 152 (1605)
Q Consensus 86 I~~wd~~~~q~-----------~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG-~~~~~~-ik 152 (1605)
|+.++-.++.. .++..+++.+ |+.. ....... .+.. ...... ..
T Consensus 80 i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i------------------~v~d----~~~~~~~-~~~~~~~~~~~~~~ 136 (260)
T d1rwia_ 80 VTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAV------------------YVAD----RGNNRVV-KLAAGSKTQTVLPF 136 (260)
T ss_dssp EEECTTCSCCEECCCCSCCSEEEEEECTTCCE------------------EEEE----GGGTEEE-EECTTCSSCEECCC
T ss_pred EEEEEECCCEEEEEEEEEEECCCCCCCCCCEE------------------EEEC----CCCCCCC-CCCCCCCEEEEEEE
T ss_conf 35542112000000100000000024553205------------------7503----3555321-12322220122320
Q ss_pred CCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECC
Q ss_conf 44578822764316987699981486289873134319998852242222330247652783089986589909963258
Q 000378 153 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1605)
Q Consensus 153 ~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs 232 (1605)
..+..| .++++.|++.+.++...++.|..|+....... ++.. -.+.....+++.|+|.+.++-...++|..++..
T Consensus 137 ~~~~~p-~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~---~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~ 211 (260)
T d1rwia_ 137 TGLNDP-DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 211 (260)
T ss_dssp CSCCSC-CEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCC---SSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred CCCCCC-CEEEECCCCCEEEECCCCCCCCCCCCCCCEEE-EEEC---CCCCCCCCCEEEEEEEEEEEECCCCEEEEEECC
T ss_conf 366775-20545489988641025643322234310012-2210---114787631231000134321489989999699
Q ss_pred CCCCEE
Q ss_conf 999804
Q 000378 233 IERPSM 238 (1605)
Q Consensus 233 ~~~~~m 238 (1605)
......
T Consensus 212 ~~~~~~ 217 (260)
T d1rwia_ 212 STTSTV 217 (260)
T ss_dssp CSCCEE
T ss_pred CCEEEE
T ss_conf 976999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.32 E-value=0.0053 Score=35.94 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=9.8
Q ss_pred EEEECCCCEEEEEEC-CCCEEEEEECC
Q ss_conf 476527830899865-89909963258
Q 000378 207 AFAFHPTLEWLFVGD-RRGTLLAWDVS 232 (1605)
Q Consensus 207 a~Af~P~g~~l~~G~-~dgtl~~W~vs 232 (1605)
.+||+|++.+|++.+ ..++|..+++.
T Consensus 181 Gia~s~dg~~lyvad~~~~~I~~~d~~ 207 (319)
T d2dg1a1 181 GIALSTDEKVLWVTETTANRLHRIALE 207 (319)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCCCEEEEECCCCCCEEEEEEC
T ss_conf 001012221278740468914799976
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.25 E-value=0.0061 Score=35.47 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=19.4
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEE
Q ss_conf 247652783089986589909963258999804630
Q 000378 206 GAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGM 241 (1605)
Q Consensus 206 ~a~Af~P~g~~l~~G~~dgtl~~W~vs~~~~~m~g~ 241 (1605)
....|+|||+.|+- .++|.|.++++.+.++.-|-+
T Consensus 236 ~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 236 YPRHLNTDGRRILF-SKGGSIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp CEEEEEESSSCEEE-EETTEEEEECTTTCCEEECCC
T ss_pred CCCCCCCCCCEEEE-EECCEEEEEECCCCCEEEECC
T ss_conf 44328679899999-859999999899998788425
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.0092 Score=34.08 Aligned_cols=179 Identities=12% Similarity=0.008 Sum_probs=96.1
Q ss_pred CCCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCE----
Q ss_conf 99814574789645666-4391599983667862520158955024321589996589973598087430688842----
Q 000378 22 LQPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1605)
Q Consensus 22 ~~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~---- 96 (1605)
..|+.++|.+++.+..+ ..+..|+.++.-++..+....-......||+.+ +|.+.++-..+..+...+......
T Consensus 57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~ 135 (260)
T d1rwia_ 57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLP 135 (260)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECC
T ss_pred CCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEEEEEECCCCCCCC-CCEEEEECCCCCCCCCCCCCCCEEEEEE
T ss_conf 684089993899889863100003554211200000010000000002455-3205750335553211232222012232
Q ss_pred --------EEEECCCCCCCCC-CCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf --------8973798552111-2586167124787531781223344201876430589985334445788227643169
Q 000378 97 --------FVLHSPEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR 167 (1605)
Q Consensus 97 --------~v~~sp~~~~~~~-s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~ 167 (1605)
.++++|++++.-. ..+..| .+|. ....... + ...++++.| ..|++.|+
T Consensus 136 ~~~~~~p~~i~~~~~g~~~v~~~~~~~i---------~~~d----~~~~~~~-~--------~~~~~~~~p-~gi~~d~~ 192 (260)
T d1rwia_ 136 FTGLNDPDGVAVDNSGNVYVTDTDNNRV---------VKLE----AESNNQV-V--------LPFTDITAP-WGIAVDEA 192 (260)
T ss_dssp CCSCCSCCEEEECTTCCEEEEEGGGTEE---------EEEC----TTTCCEE-E--------CCCSSCCSE-EEEEECTT
T ss_pred ECCCCCCCEEEECCCCCEEEECCCCCCC---------CCCC----CCCCEEE-E--------EECCCCCCC-CCCEEEEE
T ss_conf 0366775205454899886410256433---------2223----4310012-2--------210114787-63123100
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 8769998148628987313431999885224222233024765278308998658990996
Q 000378 168 LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 228 (1605)
Q Consensus 168 ~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~ 228 (1605)
+-+..+-+..+.|..|+....... .+.. -.+....++||+++|.+.++-..+++|.-
T Consensus 193 g~l~vsd~~~~~i~~~~~~~~~~~-~~~~---~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 193 GTVYVTEHNTNQVVKLLAGSTTST-VLPF---TGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp CCEEEEETTTTEEEEECTTCSCCE-ECCC---CSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCEEE-EECC---CCCCCEEEEEEECCCCEEEEECCCCEEEE
T ss_conf 013432148998999969997699-9706---99898179999089999999799998999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.98 E-value=0.011 Score=33.53 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=102.6
Q ss_pred CCCEEEECCCCCEEEEECC--------CEEEEEECCCCCEEEECCCC-----CCEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 9814574789645666439--------15999836678625201589-----5502432158999658997359808743
Q 000378 23 QPHEAAFHPNQALIAVAIG--------TYIIEFDTLTGSRIASIDIN-----SPVVRMAYSPTSGHAVVAILEDCTIRSC 89 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~a~g--------~~I~l~d~~tG~~~~~l~~~-----~~v~~lA~SP~~g~~laa~~~D~tI~~w 89 (1605)
.+++.+|+|+|.++.+... ..|.-||..+|......... ..-..|+|+| +|..+.+......|...
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEC-CCCEEEEEECCCEEEEE
T ss_conf 97173996999999998754023452999999989999599997776556788530699907-99989999779839999
Q ss_pred CCCCCCEEE-EECCCCCCC------CCCCCCEEEECCCCC--CCEEEECCCC--CCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 068884289-737985521------112586167124787--5317812233--44201876430589985334445788
Q 000378 90 DFDTEQSFV-LHSPEKKME------SISVDTEVHLALTPL--QPVVFFGFHR--RMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 90 d~~~~q~~v-~~sp~~~~~------~~s~d~~vh~a~t~~--~l~vw~~~~~--~~s~~~vgt~eG~~~~~~ik~dlkkp 158 (1605)
|.+.....+ ....+++.+ +...|+.+......- .. |..... ...+.+. -+......+++-.++..|
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~--~~~~~~~~~~~G~v~-~~~~dg~~~~~~~~~~~p 174 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAP--ADYTRSMQEKFGSIY-CFTTDGQMIQVDTAFQFP 174 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTT--SCCCBTTSSSCEEEE-EECTTSCEEEEEEEESSE
T ss_pred ECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCC--CCCCCEECCCCCEEE-EEEECCCEEEEECCCCEE
T ss_conf 47774799973343245457872789888998999148667543--201100026884389-995257403750785322
Q ss_pred CEEEEEECCCC----EEEEE-ECCCEEEEEECCC-CEEEE-EEEEC-CCCCCCCCEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 22764316987----69998-1486289873134-31999-88522-422223302476527830899865899099632
Q 000378 159 IVNLACHPRLP----VLYVA-YADGLIRAYNIHT-YAVHY-TLQLD-NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1605)
Q Consensus 159 V~~LA~~P~~~----vL~~a-~~dg~IR~w~i~t-~~v~~-tL~~~-~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~ 230 (1605)
.++|++|+.- .||++ +..+.|..|++.. +.+.. .+..+ +.-+..+--.+++-.+|.+.++....+.|..|+
T Consensus 175 -NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 -NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp -EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred -EEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf -1369978877630379998602431177611676543015689971335666410257834785799982799999996
Q ss_pred CC
Q ss_conf 58
Q 000378 231 VS 232 (1605)
Q Consensus 231 vs 232 (1605)
-.
T Consensus 254 p~ 255 (314)
T d1pjxa_ 254 PD 255 (314)
T ss_dssp TT
T ss_pred CC
T ss_conf 99
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.81 E-value=0.014 Score=32.56 Aligned_cols=191 Identities=10% Similarity=0.043 Sum_probs=105.9
Q ss_pred CCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEECCCCC-------CEEEEEECCCCCCEEE-EEECCCCEEEECCCC
Q ss_conf 9814574789645666-439159998366786252015895-------5024321589996589-973598087430688
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDINS-------PVVRMAYSPTSGHAVV-AILEDCTIRSCDFDT 93 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~-------~v~~lA~SP~~g~~la-a~~~D~tI~~wd~~~ 93 (1605)
.|+.+|+.|++.++.+ ..+.+|..||. .|..+....... .-..+++.+..+..++ .-..+..|..++.+.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 9007999499989999799898999969-999999816657886642266300012344552000047753100000256
Q ss_pred CCEEEEECCCCC----CCCCCCCCEEEECCCCC-CCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 842897379855----21112586167124787-5317812233442018764305899853344457882276431698
Q 000378 94 EQSFVLHSPEKK----MESISVDTEVHLALTPL-QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1605)
Q Consensus 94 ~q~~v~~sp~~~----~~~~s~d~~vh~a~t~~-~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~ 168 (1605)
+. ...+.+..- -++...++.+.++.... +.+++ ..+++.+.++-... .-.....+++.+++
T Consensus 103 ~~-~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~-----~~~g~~~~~~g~~~--------~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 103 QF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIF-----DQNGNVLHKFGCSK--------HLEFPNGVVVNDKQ 168 (279)
T ss_dssp CE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEE-----CTTSCEEEEEECTT--------TCSSEEEEEECSSS
T ss_pred CC-EEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEE-----CCCCCEEECCCCCC--------CCCCCCEEEECCCE
T ss_conf 30-240388864254200001478479996326325676-----26875010022001--------02566243201200
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC-CCCEEEEEEC
Q ss_conf 76999814862898731343199988522422223302476527830899865-8990996325
Q 000378 169 PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDV 231 (1605)
Q Consensus 169 ~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dgtl~~W~v 231 (1605)
.++.+.+..+.|..|+. ++....++-.+. ++.....+++.|+|.++++-. .+++|.+++-
T Consensus 169 ~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g--~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 169 EIFISDNRAHCVKVFNY-EGQYLRQIGGEG--ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTT--TSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EEEEEECCCCCEEEEEC-CCCEEEEECCCC--CCCCCCCCCCCCCCEEEEEECCCCCEEEEECC
T ss_conf 17862013551002304-794445301132--11487623231478699997899808999999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.016 Score=32.21 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=82.3
Q ss_pred CCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEECCCC----CCEEEEEECCCCCCEEEEEECCCCEEEECCC
Q ss_conf 999999981457478964566643915999836678625201589----5502432158999658997359808743068
Q 000378 17 GDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN----SPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1605)
Q Consensus 17 ~~~~~~~v~~~aF~P~gallA~a~g~~I~l~d~~tG~~~~~l~~~----~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~ 92 (1605)
+..++-.++ .-|++++.++-..-+..|.+||+.||.....+... -.+.+..+|| ||..++... | +.+.|..
T Consensus 13 ~~~~~~~~~-~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~-~-~~~~~r~- 87 (465)
T d1xfda1 13 EDFKIHDPE-AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSY-N-VEPIYQH- 87 (465)
T ss_dssp TTTCCCCCC-CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEE-S-CCCCSSS-
T ss_pred CCCCCCCCC-CEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECC-CCCEEEEEE-C-CCCEEEE-
T ss_conf 766347988-7891798489992899699998789988998727644445532138989-888699998-4-5100476-
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCEEEE--EEEECCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 88428973798552111258616712478753178122334420187--6430589985334445788227643169876
Q 000378 93 TEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVV--GTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1605)
Q Consensus 93 ~~q~~v~~sp~~~~~~~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~v--gt~eG~~~~~~ik~dlkkpV~~LA~~P~~~v 170 (1605)
|..+ ..|++. ..++... ...++... .+....+|||+..
T Consensus 88 -----------------s~~~---------~~~i~d----~~~~~~~~l~~~~~~~~----------~l~~~~wSPDG~~ 127 (465)
T d1xfda1 88 -----------------SYTG---------YYVLSK----IPHGDPQSLDPPEVSNA----------KLQYAGWGPKGQQ 127 (465)
T ss_dssp -----------------CCCS---------EEEEEE----SSSCCCEECCCTTCCSC----------CCSBCCBCSSTTC
T ss_pred -----------------ECCC---------CEEEEE----CCCCCEEECCCCCCCCC----------CCCEEEECCCCCE
T ss_conf -----------------0335---------289998----56884564157667764----------3110024267856
Q ss_pred EEEEECCCEEEEEECCCCEEEE-EEEECCCCCCCC-------------CEEEEECCCCEEEEEEC
Q ss_conf 9998148628987313431999-885224222233-------------02476527830899865
Q 000378 171 LYVAYADGLIRAYNIHTYAVHY-TLQLDNTIKLLG-------------AGAFAFHPTLEWLFVGD 221 (1605)
Q Consensus 171 L~~a~~dg~IR~w~i~t~~v~~-tL~~~~~~~~~g-------------~~a~Af~P~g~~l~~G~ 221 (1605)
++-.+ ++-+-..+..++...- |-.+.......| -.++-++|||+.|+...
T Consensus 128 iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 128 LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred EEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEE
T ss_conf 99996-13299995489965897112676604436643100123036643489779898689999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.03 Score=30.10 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=43.8
Q ss_pred CCCEEEEEECCCCEEEEEEC---------CCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEE
Q ss_conf 88227643169876999814---------862898731343199988522422223302476527830899-86589909
Q 000378 157 KPIVNLACHPRLPVLYVAYA---------DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTL 226 (1605)
Q Consensus 157 kpV~~LA~~P~~~vL~~a~~---------dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl 226 (1605)
.++....+|||+..++.++. .+.+-+|++.++... .|.. ..-.........|+|||.+|+ |- ++-|
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~-~~~~~~~l~~~~wSPDG~~iafv~--~~nl 136 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDP-PEVSNAKLQYAGWGPKGQQLIFIF--ENNI 136 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCC-TTCCSCCCSBCCBCSSTTCEEEEE--TTEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEE-ECCC-CCCCCCCCCEEEECCCCCEEEEEE--CCEE
T ss_conf 55321389898886999984510047603352899985688456-4157-667764311002426785699996--1329
Q ss_pred EEEECCC
Q ss_conf 9632589
Q 000378 227 LAWDVSI 233 (1605)
Q Consensus 227 ~~W~vs~ 233 (1605)
.+.+...
T Consensus 137 ~~~~~~~ 143 (465)
T d1xfda1 137 YYCAHVG 143 (465)
T ss_dssp EEESSSS
T ss_pred EEEECCC
T ss_conf 9995489
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=95.78 E-value=0.048 Score=28.50 Aligned_cols=192 Identities=10% Similarity=0.056 Sum_probs=91.8
Q ss_pred CCCEEEECCCCCEEEE-ECCCEEEEEECCCCCEEEECCC--CC---CEEEEEECCCCCCEEEEEEC--------------
Q ss_conf 9814574789645666-4391599983667862520158--95---50243215899965899735--------------
Q 000378 23 QPHEAAFHPNQALIAV-AIGTYIIEFDTLTGSRIASIDI--NS---PVVRMAYSPTSGHAVVAILE-------------- 82 (1605)
Q Consensus 23 ~v~~~aF~P~gallA~-a~g~~I~l~d~~tG~~~~~l~~--~~---~v~~lA~SP~~g~~laa~~~-------------- 82 (1605)
.|+.++|++++.+|.+ .....|..+|..++........ +. ...-+++.| +|.+.+.-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECC-CCCEEEECCCCCCCCCCCCCEECC
T ss_conf 5306999079998999977983999947774799973343245457872789888-998999148667543201100026
Q ss_pred -CCCEEEECCCCCCE----------EEEECCCCCCCCCCCCCEEEECCCCC-CCEEEEC--CCCCCCEEEEEEEECCCCC
Q ss_conf -98087430688842----------89737985521112586167124787-5317812--2334420187643058998
Q 000378 83 -DCTIRSCDFDTEQS----------FVLHSPEKKMESISVDTEVHLALTPL-QPVVFFG--FHRRMSVTVVGTVEGGRAP 148 (1605)
Q Consensus 83 -D~tI~~wd~~~~q~----------~v~~sp~~~~~~~s~d~~vh~a~t~~-~l~vw~~--~~~~~s~~~vgt~eG~~~~ 148 (1605)
++.|+-++.+-+.. -++++|++. .....+-.+.+.. +.|.|.- -.......+...+.+...
T Consensus 151 ~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d----~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~- 225 (314)
T d1pjxa_ 151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMND----GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE- 225 (314)
T ss_dssp SCEEEEEECTTSCEEEEEEEESSEEEEEEEECTT----SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS-
T ss_pred CCCEEEEEEECCCEEEEECCCCEEEEEEECCCCC----CCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCC-
T ss_conf 8843899952574037507853221369978877----63037999860243117761167654301568997133566-
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC-CCCEEE
Q ss_conf 5334445788227643169876999814862898731343199988522422223302476527830899865-899099
Q 000378 149 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLL 227 (1605)
Q Consensus 149 ~~ik~dlkkpV~~LA~~P~~~vL~~a~~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~-~dgtl~ 227 (1605)
.--.++|+-.++-+..+.+..+.|..|+-.++.+..++.. ......++||.|+++.|++-+ ..|+|.
T Consensus 226 --------~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~----p~~~~t~~afg~d~~~lyVt~~~~g~i~ 293 (314)
T d1pjxa_ 226 --------GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC----PFEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp --------CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC----SSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred --------CCCEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEEC----CCCCEEEEEEECCCCEEEEEECCCCCEE
T ss_conf --------6410257834785799982799999996999979999979----9998789999289899999987899199
Q ss_pred EEECC
Q ss_conf 63258
Q 000378 228 AWDVS 232 (1605)
Q Consensus 228 ~W~vs 232 (1605)
--++.
T Consensus 294 ~~~~~ 298 (314)
T d1pjxa_ 294 KFEWQ 298 (314)
T ss_dssp EEECS
T ss_pred EEECC
T ss_conf 99789
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.98 E-value=0.083 Score=26.62 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=98.9
Q ss_pred CCCCCCEEEECCCCC-EEEE--ECCCEEEEEECCCCCEEEEC--CCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCC
Q ss_conf 999981457478964-5666--43915999836678625201--589550243215899965899735980874306888
Q 000378 20 KPLQPHEAAFHPNQA-LIAV--AIGTYIIEFDTLTGSRIASI--DINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE 94 (1605)
Q Consensus 20 ~~~~v~~~aF~P~ga-llA~--a~g~~I~l~d~~tG~~~~~l--~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~ 94 (1605)
....|..+++-++.. .+.+ ..+..|..++ ..|...... ........+|..+ +|..+++-.....|...|.+..
T Consensus 68 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~ 145 (279)
T d1q7fa_ 68 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN 145 (279)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC-CCCCCEEECCCCCCCCCCEECCCC-CCCEEEEEECCCEEEEECCCCC
T ss_conf 42266300012344552000047753100000-256302403888642542000014-7847999632632567626875
Q ss_pred C-------------EEEEECCCCCCCCCCCCCEEEECCCC-CCCEEEECCCCCCCEEEEEEE--ECCCCCCCCCCCCCCC
Q ss_conf 4-------------28973798552111258616712478-753178122334420187643--0589985334445788
Q 000378 95 Q-------------SFVLHSPEKKMESISVDTEVHLALTP-LQPVVFFGFHRRMSVTVVGTV--EGGRAPTKIKTDLKKP 158 (1605)
Q Consensus 95 q-------------~~v~~sp~~~~~~~s~d~~vh~a~t~-~~l~vw~~~~~~~s~~~vgt~--eG~~~~~~ik~dlkkp 158 (1605)
- ..++..+++ .+.++... .+.++|. .+++.+.++ +|... -
T Consensus 146 ~~~~~g~~~~~~~~~~i~~d~~g---------~i~v~d~~~~~V~~~d-----~~G~~~~~~g~~g~~~----------~ 201 (279)
T d1q7fa_ 146 VLHKFGCSKHLEFPNGVVVNDKQ---------EIFISDNRAHCVKVFN-----YEGQYLRQIGGEGITN----------Y 201 (279)
T ss_dssp EEEEEECTTTCSSEEEEEECSSS---------EEEEEEGGGTEEEEEE-----TTCCEEEEESCTTTSC----------S
T ss_pred EEECCCCCCCCCCCCEEEECCCE---------EEEEEECCCCCEEEEE-----CCCCEEEEECCCCCCC----------C
T ss_conf 01002200102566243201200---------1786201355100230-----4794445301132114----------8
Q ss_pred CEEEEEECCCCEEEEEE-CCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 22764316987699981-48628987313431999885224222233024765278308998658990996325899
Q 000378 159 IVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~-~dg~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~~dgtl~~W~vs~~ 234 (1605)
..++|+.|++.++++-. .++.|..|+ .++....++..+ .+......+|+.|+|. |+|.+.+++|.+|.--.-
T Consensus 202 P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~--~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 202 PIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK--VKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES--SCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCC
T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECC--CCCCCEEEEEEECCCC-EEEEECCCEEEEEEEEEE
T ss_conf 762323147869999789980899999-999999999688--8889883799908991-999918996999872203
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.11 Score=25.58 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=93.9
Q ss_pred EEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCC---CEEEECCCCCCE-----------EEEECCCCCCCC
Q ss_conf 599983667862520158955024321589996589973598---087430688842-----------897379855211
Q 000378 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC---TIRSCDFDTEQS-----------FVLHSPEKKMES 108 (1605)
Q Consensus 43 ~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~---tI~~wd~~~~q~-----------~v~~sp~~~~~~ 108 (1605)
+|-+.|...+....++.....+.+-+||| ||..||-...+. .+..-+...... +..+||+++.+.
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~ 98 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 98 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred EEEEECCCCCCCEEEECCCCCEEEEEECC-CCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCEECCCCCEEE
T ss_conf 99999289997679865898426038878-99989999815267513443113675067764202454302448898646
Q ss_pred CCCCCEEEECCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEE-EEECCCEE--EEEEC
Q ss_conf 1258616712478753178122334420187643058998533444578822764316987699-98148628--98731
Q 000378 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADGLI--RAYNI 185 (1605)
Q Consensus 109 ~s~d~~vh~a~t~~~l~vw~~~~~~~s~~~vgt~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~-~a~~dg~I--R~w~i 185 (1605)
......- ..+.+. .........-..+.+........+++....+ +...+|.. ..+++
T Consensus 99 ~~~~~~~-------~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~ 158 (269)
T d2hqsa1 99 FALSKTG-------SLNLYV-------------MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 158 (269)
T ss_dssp EEECTTS-------SCEEEE-------------EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred EEEECCC-------CCCEEE-------------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEC
T ss_conf 7640278-------641000-------------02221220000101442114543455443300001268743865421
Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEEECCCC
Q ss_conf 343199988522422223302476527830899-8658990996325899
Q 000378 186 HTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIE 234 (1605)
Q Consensus 186 ~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs~~ 234 (1605)
.+.... .+.. .........++|++.+++ +..+.|...+|-...+
T Consensus 159 ~~~~~~-~~~~----~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~ 203 (269)
T d2hqsa1 159 NGGAPQ-RITW----EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 203 (269)
T ss_dssp TSSCCE-ECCC----SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCCCCE-EEEC----CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECC
T ss_conf 331000-1000----12222343223454305778605880125676035
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.30 E-value=0.41 Score=21.20 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=109.2
Q ss_pred CEEEECC-CCCEEEE-ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCEEEEECC
Q ss_conf 1457478-9645666-4391599983667862520158955024321589996589973598087430688842897379
Q 000378 25 HEAAFHP-NQALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSP 102 (1605)
Q Consensus 25 ~~~aF~P-~gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~D~tI~~wd~~~~q~~v~~sp 102 (1605)
++..|++ ++.|.=+ -.+..|..||..+|... +......+..+++.+ +|..+++ +++ -|..+|..+++...+..+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEECCCCCEEEEEEC-CCCEEEE-EEC-CCEEEECCCCEEEEEEEE
T ss_conf 587598999999999878999999989989599-998999817989965-9988999-737-638950464513578664
Q ss_pred CCCCCC-CCCCCEEEECCCC-CCCEEEECCCCCCCEEEEE---EEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-EC
Q ss_conf 855211-1258616712478-7531781223344201876---4305899853344457882276431698769998-14
Q 000378 103 EKKMES-ISVDTEVHLALTP-LQPVVFFGFHRRMSVTVVG---TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YA 176 (1605)
Q Consensus 103 ~~~~~~-~s~d~~vh~a~t~-~~l~vw~~~~~~~s~~~vg---t~eG~~~~~~ik~dlkkpV~~LA~~P~~~vL~~a-~~ 176 (1605)
+..... ...|..+ .| =++ |++..........| -+..+ ..+++-.++..| ..++++|+...||++ +.
T Consensus 97 ~~~~~~~~~nd~~v----d~~G~i--w~~~~~~~~~~~~g~l~~~~~g-~~~~~~~~~~~~-Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 97 ESDLPGNRSNDGRM----HPSGAL--WIGTMGRKAETGAGSIYHVAKG-KVTKLFADISIP-NSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp STTCTTEEEEEEEE----CTTSCE--EEEEEETTCCTTCEEEEEEETT-EEEEEEEEESSE-EEEEECTTSCEEEEEETT
T ss_pred ECCCCCCCCEEEEE----CCCCCE--EEEECCCCCCCCCEEEEEECCC-CEEEEEECCCCC-CEEEECCCCCEEEEEECC
T ss_conf 04787661013579----799999--8874264313333057662299-689986506876-402465877668985156
Q ss_pred CCEEEEEECCCC--EE--EEEEEECCCCCCCCCEEEEECCCCEEEEEEC----------CCCEEEEEECCCCCCEEEEEC
Q ss_conf 862898731343--19--9988522422223302476527830899865----------899099632589998046303
Q 000378 177 DGLIRAYNIHTY--AV--HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD----------RRGTLLAWDVSIERPSMIGMD 242 (1605)
Q Consensus 177 dg~IR~w~i~t~--~v--~~tL~~~~~~~~~g~~a~Af~P~g~~l~~G~----------~dgtl~~W~vs~~~~~m~g~~ 242 (1605)
.+.|..|++..- .. .-.+..+.+-...+.-.+++-.+|.+-+..- ....+..|+++.++|++.-|+
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEE
T ss_pred CCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCCCCEEEEECCCCCCEEEEEEE
T ss_conf 63246764535555324535788416755566632678699998953207884688569992866863899852798982
Q ss_pred C
Q ss_conf 6
Q 000378 243 G 243 (1605)
Q Consensus 243 g 243 (1605)
|
T Consensus 249 G 249 (295)
T d2ghsa1 249 G 249 (295)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.35 E-value=0.53 Score=20.31 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=42.8
Q ss_pred EEECCC--CCEEEE-ECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEC-CC-----CEEEECCCCC
Q ss_conf 574789--645666-43915999836678625201589550243215899965899735-98-----0874306888
Q 000378 27 AAFHPN--QALIAV-AIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-DC-----TIRSCDFDTE 94 (1605)
Q Consensus 27 ~aF~P~--gallA~-a~g~~I~l~d~~tG~~~~~l~~~~~v~~lA~SP~~g~~laa~~~-D~-----tI~~wd~~~~ 94 (1605)
..-||| |..+|- +.| .|-+.|+.+|...........+...+||| ||..||-... ++ .|...+.++.
T Consensus 4 ~~~sPdi~G~~v~f~~~~-dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCD-DLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp CCEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred CCCCCCCCCCEEEEEECC-CEEEEECCCCCEEEEECCCCCCCCEEECC-CCCEEEEEEEECCCCCCEEEEEEEECCC
T ss_conf 425888799999999099-68999899998799766998526779878-9998999986289877228999982599
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.52 E-value=0.65 Score=19.63 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=32.0
Q ss_pred CEEEEEECCCCEEEEEECC----CEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEEECC
Q ss_conf 2276431698769998148----62898731343199988522422223302476527830899-86589909963258
Q 000378 159 IVNLACHPRLPVLYVAYAD----GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVS 232 (1605)
Q Consensus 159 V~~LA~~P~~~vL~~a~~d----g~IR~w~i~t~~v~~tL~~~~~~~~~g~~a~Af~P~g~~l~-~G~~dgtl~~W~vs 232 (1605)
+..+++.|++.+.+.-..+ +.-.+|.+.++.+. .+.. .......++|+|++.++. +.+..++|..+++.
T Consensus 105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~-~~~~----~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFA----DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEE----EESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEE-EEEE----CCCCCCEEEECCCCCEEEEEECCCCEEEEEEEC
T ss_conf 0135797999998874264313333057662299689-9865----068764024658776689851566324676453
|