Citrus Sinensis ID: 000390


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580-----
MSRKNRMRAESGTCNVCFAPCSSCMHLNLALMGSKTEEFSDETCRETTGSQYSINEADDLRSFKRGPCNKLQQTASEASNPLSVNSSHDSFSVNAESKVTLRSSEISDASEDFEIHPKFSSRGGTAEGQISPKLEIGLDQRISLNKYDDPKGAEGLDDNISCVSRANDTSTALSENNRNMDIKNLSHSSASVCSLGPEGLEKAQSSEKLELSEIPSVEKVGASCGSPKVRSPVPDSQSDKRLVESSSDVLTKVHQKSEAETDRDNGEPPDEALKCLDKDKEELTSTQLAELPDVQRFPAASGDETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEETEKQKQDIEGKRTNKQSTSTQSSGKRHAENLDAAPAAKRQAIETSPGYPKPLSPSKAAALSRDSSFKSLDKGKVRPVTFGNNSSNDVVETARSPGGLLPQTTKGTLLKSSSFSTLNSKAKVKLVDEVVPQKQKATRDQASLDVKEGPSRVMGKSMSFKSTSSGRSSAGESKLRALSPRPSRLHDLKGLKQVKERNAFERKSLSRLDRSLTVSSMATPASTPKADQKLTPRGEAVSFSSASNNREAKVVKSEGKGSTLTKSNSTLPRKGLEVSGTPVGALSTSAMCSSSVEQKPNLVSPKEEPSSSSSEKPSTIVNELVQDGLPRSVESTNQGEKSSSCRSRPTLTAGSKGVLCQKCKEVGHDVESCPLGSTQVSGIDVSAGRNCREGMIKGNKLKAAIEAAMHKLPGTYGRNKVNDQLDGLGITNMDLNCERSSQDQFSVSNKMKGAQEVLINKQTTINQLKPALLKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVRKVNCSNSTKHSCFAGSKMVPLDRVITTDNLSLSQNILPKHADKDSAACDTSHNIVPGSYGPDGTCVTLNENCDNKASSVQLTSLGSQSNSIQHDGRFDSRLLSRAAMTVPLLSGEIRCARPPLEECNLAEGGLGTEVKSSLQATRTSISCSKGGTSEMNGDASLGEDSSSLKNFPVGNEGAHDEGSVDSGKVPGIMKCGRGQINLEEDLNEGSFDVEKVPDIMESGRDQINLERDLNKGTFDADKIPVITKSGRDQINLERDLNESIVDGKIVPDKIKSGRDQINLERDLNEGSVDAKNVMMDIVKRVRARFNLVRDLNDRGVTAEKLPDIVKSDRDQIDLERDLKEGRYMNAETSLDRNLNFKGLNHQQFHHGNSPHLDLMETAAASSCGTSQKMPWNEAFLDGESSSKKLKTGFAGPYECSSSRDGDSCSDGFSSRRDDLCPSSSNQEKISEELLDRKVILKDLESPERYFFHVDSHRENDCRLGANSMPWKELSSKDEDELLDTVPNLNLALGADTKQPNKGMLPFFVGPLEKNNNQDRPPDKGADKGAEEDISASLSLSLSFPFPDKEQTSVKPASKTEQLLPERRHVNTSLLLFGGFLDK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEccccccccEEEEEEEEcccccccccccccEEEccccccHHHHHHHHccccccccEEccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEcccEEEEEEccccccHHHHccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEcccccc
ccccEEEEEEccccccccccccccccccHHHccccccccccccccccEcccccccccccccccccccccHccccccccccccccccccccccccccccEEEcccccccccHHcccccccccccccccccccccccccccccccHccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccEEEccccEEEccccccccccccccccccccccccccccccccccccccccccHHHccHHccccccccccEEEEEEEEEEccccccHHEEEEEcccccccEEEEccccccccccccccccHHHHcHHcccccccHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccEEcccccccccEEEEEEEEccccccccHcccHEEcccccccHHHHHHHHHcccEEEEEEcccHHccHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEccEEEEEEEcccccHHccEEccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccEHcccccccccccccccEEEcccccccccccEEEccccccccccccccEEEEccccccccccEccHHHHccHcccccccEEEEEcccccccccccccccccccccccccccccccccEccccccccccccccccccccccccEEEccccccccccccccEEEEEEEHccccccHHHHHHHHHHHHHHHEEEEEccccccccHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHcEccccccccccccccccccccccccHcccccHcccccccHEHccccccccccccccEEEccccccccccccccHcccccccccccEEEEEEEcccccccHccccccccccHHHccccccccccEEEEcccccc
msrknrmraesgtcnvcfapcsscmhlnlalmgskteefsdetcrettgsqysineaddlrsfkrgpcnklqqtaseasnplsvnsshdsfsvnaeskvtlrsseisdasedfeihpkfssrggtaegqispkleigldqrislnkyddpkgaeglddniscvsrandtstalsennrnmdiknlshssasvcslgpeglekaqsseklelseipsvekvgascgspkvrspvpdsqsdkrlvESSSDVLTKVHqkseaetdrdngeppdealkcldkdkeeltstqlaelpdvqrfpaasgdetdesdimeqdvKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLqkvpegdwlceecKFAEETEKQKQDiegkrtnkqststqssgkrhaenldaapaakrqaietspgypkplspskaaalsrdssfksldkgkvrpvtfgnnssndvvetarspggllpqttkgtllksssfstlnskAKVKLVDEVvpqkqkatrdqasldvkegpsrvmgksmsfkstssgrssagesklralsprpsrlhdlkglKQVKERNAFERKSLsrldrsltvssmatpastpkadqkltprgeavsfssasnnrEAKVvksegkgstltksnstlprkglevsgtpvgalstsamcsssveqkpnlvspkeepsssssekpsTIVNELVqdglprsvestnqgekssscrsrptltagskgvlcqkckevghdvescplgstqvsgidvsagrncregmiKGNKLKAAIEAAMHklpgtygrnkvndqldglgitnmdlncerssqdqfsvsNKMKGAQEVLINKQTTINQLKPAllkisavpeheyiwqggfevhrgeklpnlcDGIQAHLSSCASSKVLEVVSkfpqrirlkevprvstwptmfhesgakeENIALYFFAKDFESYGRNYKILVDSMMKNDLAlmgnldgiellifpsnqlpencqRWNLLFFLWGVFRVrkvncsnstkhscfagskmvpldrvittdnlslsqnilpkhadkdsaacdtshnivpgsygpdgtcvtlnencdnkassvqltslgsqsnsiqhdgrfdSRLLSRAAMTvpllsgeircarppleecnlaegglgtevKSSLQATRtsiscskggtsemngdaslgedssslknfpvgnegahdegsvdsgkvpgimkcgrgqinleedlnegsfdvekvpdimESGRDQINlerdlnkgtfdadkipvitksgrdqinlerdlnesivdgkivpdkiksgrdqinlerdlnegsvdakNVMMDIVKRVRARFNLVRdlndrgvtaeklpdivksdrdQIDLERDlkegrymnaetsldrnlnfkglnhqqfhhgnsphldlmetaaasscgtsqkmpwneafldgessskklktgfagpyecsssrdgdscsdgfssrrddlcpsssnqeKISEELLDRKVILkdlesperyfFHVDshrendcrlgansmpwkelsskdedelldtvpnlnlalgadtkqpnkgmlpffvgpleknnnqdrppdkgadkgaeeDISASlslslsfpfpdkeqtsvkpaskteqllperrhvntSLLLFGGFLDK
msrknrmraesgtcnvcfaPCSSCMHLNLALMGSKTEEFSDETCRettgsqysineaddlrsFKRGPCNKLQQTaseasnplsvnsshDSFSVNAESKVTLRSSeisdasedfeihpkfssrggtaegqisPKLEIGLDQRISLNKYDDPKGaeglddniscvSRANDtstalsennrnmDIKNLSHSSASVCSLGPEGLEKAQSSeklelseipsvekvgascgspkvrspvpdsqsdkrlvesssdvltkvhqkseaetdrdngeppDEALKCLDKDKEELTstqlaelpdvqrfpaasgdetdesdimeqDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEETEkqkqdiegkrtnkqststqssgkrhaeNLDAAPAAKRQAIEtspgypkplspskAAALsrdssfksldkgkvrpvtfgnnssndvvetarspggllpqttkgtllksssfstlnskakvklvdevvpqkqkatrdqasldvkegpsrvmgksmsfkstssgrssagesklralsprpsrlhdlkglkqvkernaferkslsrldrsltvssmatpastpkadqkltprgeavsfssasnnreakvvksegkgstltksnstlprkglevsGTPVGALSTSAMCSSSVEQKpnlvspkeepsssssekpstIVNELVqdglprsvestnqgekssscrsrptltagskGVLCQKCKEVGHDvescplgstqvsgidvsagrnCREGMIKGNKLKAAIEAAMHklpgtygrnkVNDQLDGLGITNMDLNCERSSQDQFSVSNKMKGAQEVLINKQTTINQLKPALLKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVskfpqrirlkevprvstwptmfhesgakeENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVRKVNCSnstkhscfagskmvplDRVITTDNLSLSQNILPKHADKDSAACDTSHNIVPGSYGPDGTCVTLNENCDNKASSVQLTslgsqsnsiqhDGRFDSRLLSRAAMTVPLLSGEIRCARPPLEECNLAEGGLGTEVKSSLQATRtsiscskggtseMNGDASLGEDSSSLKNFPVGnegahdegsvdsgkvpgIMKCGRGQINleedlnegsfdveKVPDIMESGRDQInlerdlnkgtfdadkipvitksgrdqinlerdlnesivdgkivpdkiksgrdqinlerdlnegsvdaknvMMDIVKRVRARfnlvrdlndrgvtaeklpdivksdrdqidlerdlkegrymnAETSLDRNLNFKGLNHQQFHHGNSPHLDLMETAAASSCGTSQKMPWNEAFLDGESSSKKLKTGFagpyecsssrdgdscsDGFSsrrddlcpsssnqekiseellDRKVILKDLESPERYFFHVDSHRENDCRLGANSMPWKELSSKDEDELLDTVPNLNLalgadtkqpnKGMLPFFVGPLEKNNNQDRPPDKGADKGAEEDISASLSlslsfpfpdkeqtsvkpaskteqllperrhvntslllfggfldk
MSRKNRMRAESGTCNVCFAPCSSCMHLNLALMGSKTEEFSDETCRETTGSQYSINEADDLRSFKRGPCNKLQQTASEASNPLSVNSSHDSFSVNAESKVTLRSSEISDASEDFEIHPKFSSRGGTAEGQISPKLEIGLDQRISLNKYDDPKGAEGLDDNISCVSRANDTSTALSENNRNMDIKNLSHSSASVCSLGPEGLEKAQSSEKLELSEIPSVEKVGASCGSPKVRSPVPDSQSDKRLVESSSDVLTKVHQKSEAETDRDNGEPPDEALKCLDKDKEELTSTQLAELPDVQRFPAASGDETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEETEKQKQDIEGKRTNKQSTSTQSSGKRHAENLDAAPAAKRQAIETSPGYPKPLSPSKAAALSRDSSFKSLDKGKVRPVTFGNNSSNDVVETARSPGGLLPQTTKGTLLKSSSFSTLNSKAKVKLVDEVVPQKQKATRDQASLDVKEGPSRVMgksmsfkstssgrssageskLRALSPRPSRLHDLKGLKQVKERNAFERKSLSRLDRSLTVSSMATPASTPKADQKLTPRGEAVSFSSASNNREAKVVKSEGKGSTLTKSNSTLPRKGLEVSGTPVGALSTSAMCSSSVEQKPNLVspkeepsssssekpsTIVNELVQDGLPRSVESTNQGEKSSSCRSRPTLTAGSKGVLCQKCKEVGHDVESCPLGSTQVSGIDVSAGRNCREGMIKGNKLKAAIEAAMHKLPGTYGRNKVNDQLDGLGITNMDLNCERSSQDQFSVSNKMKGAQEVLINKQTTINQLKPALLKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVRKVNCSNSTKHSCFAGSKMVPLDRVITTDNLSLSQNILPKHADKDSAACDTSHNIVPGSYGPDGTCVTLNENCDNKASSVQLTSLGSQSNSIQHDGRFDSRLLSRAAMTVPLLSGEIRCARPPLEECNLAEGGLGTEVKSSLQATRTSISCSKGGTSEMNGDASLGEDSSSLKNFPVGNEGAHDEGSVDSGKVPGIMKCGRGQINLEEDLNEGSFDVEKVPDIMESGRDQINLERDLNKGTFDADKIPVITKSGRDQINLERDLNESIVDGKIVPDKIKSGRDQINLERDLNEGSVDAKNVMMDIVKRVRARFNLVRDLNDRGVTAEKLPDIVKSDRDQIDLERDLKEGRYMNAETSLDRNLNFKGLNHQQFHHGNSPHLDLMETAAASSCGTSQKMPWNEAFLDGESSSKKLKTGFAGPYEcsssrdgdscsdgfssrrddLCPSSSNQEKISEELLDRKVILKDLESPERYFFHVDSHRENDCRLGANSMPWKELSSKDEDELLDTVPNLNLALGADTKQPNKGMLPFFVGPLEKNNNQDRPPDKGADKGAEEDIsaslslslsFPFPDKEQTSVKPASKTEQLLPERRHVNTSLLLFGGFLDK
************TCNVCFAPCSSCMHLNLALMG****************************************************************************************************************************************************************************************************************************************************************************************DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKF****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GVLCQKCKEVGHDVESCPLGSTQVSGIDVSAGRNCREGMIKGNKLKAAIEAAMHKLPGTYGRNKVNDQLDGLGITNMDL********************EVLINKQTTINQLKPALLKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVRKVNCSNSTKHSCFAGSKMVPLDRVITTDNLSLSQNIL**************HNIVPGSYGPDGTCVTLN********************************LSRAAMTVPLLSGEIRCARPPLEECNL****************************************************************************************************************FDADKIPVIT***************SIVDGKIV*********************VDAKNVMMDIVKRVRARFNLVRDLNDRGVTAEKL**********************************************************************************************************************************RKVILKDLESPERYFFHVDSH*********************************L***************FF***************************************************************TSLLLFGGF***
******M****GTCNVCFAPCSSCMHLNLA*****************************************************************************************************************************************************************************************************************************************************************************************EQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECK**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVR*********************************************************************************************************************************************************************************************************************************************KGTF********************************************************************************************SDRDQIDLERDLKEGRY***********************GNSPHLD********************************************************************************VILKDLESPERYFFHVDSHRENDCRL*******************DTVPNLNLA**********GMLPFFV****************************LSLSLSFP************************VNTSLLLFGGFL**
***********GTCNVCFAPCSSCMHLNLALMGSKT************GSQYSINEADDLRSFKRGPCN**********************************SEISDASEDFEIHPKFSSRGGTAEGQISPKLEIGLDQRISLNKYDDPKGAEGLDDNISCVSRANDTSTALSENNRNMDIKNLSHSSASVCSLG**************LSEIPSVE**************************************************PDEALKCLDKDKEELTSTQLAELPDVQRFPA**********IMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAE****************************************QAIETS********************FKSLDKGKVRPVTFGNNSSNDVVETARSPGGLLPQTTKGTLLKSSSFSTLNSKAKVKLVDEVV***********************************************SPRPSRLHDLKGLKQVKERNAFERKSLSRLDRSLTVS*************************************************STLPRKGLEVSGTPVGALST*******************************IVNELVQDGLPRS***********************KGVLCQKCKEVGHDVESCPLGSTQVSGIDVSAGRNCREGMIKGNKLKAAIEAAMHKLPGTYGRNKVNDQLDGLGITNMDLNCERSSQDQFSVSNKMKGAQEVLINKQTTINQLKPALLKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVRKVNCSNSTKHSCFAGSKMVPLDRVITTDNLSLSQNILPKHADKDSAACDTSHNIVPGSYGPDGTCVTLNENCDNKASSVQLTSLGSQSNSIQHDGRFDSRLLSRAAMTVPLLSGEIRCARPPLEECNLAEGGLGTEVKSSLQATRTSISCSKGGTSEMNGDASLGEDSSSLKNFPVGNE********DSGKVPGIMKCGRGQINLEEDLNEGSFDVEKVPDIMESGRDQINLERDLNKGTFDADKIPVITKSGRDQINLERDLNESIVDGKIVPDKIKSGRDQINLERDLNEGSVDAKNVMMDIVKRVRARFNLVRDLNDRGVTAEKLPDIVKSDRDQIDLERDLKEGRYMNAETSLDRNLNFKGLNHQQFHHGNSPHLDLMETAAASSCGTSQKMPWNEAFLDGESSSKKLKTG***********************************KISEELLDRKVILKDLESPERYFFHVDSHRENDCRLGANSMPWKELSSKDEDELLDTVPNLNLALGADTKQPNKGMLPFFVGPLEKNNNQ****************SASLSLSLSFPFPD*************QLLPERRHVNTSLLLFGGFLDK
***KNRMRAESGTCNVCFAPCSSCMHLNLALMG**********************************************************************************************************Q*IS*N****PKGAEGLDDNISCVSRA***************************************************************************LVESSSDVLTKVH*****************************************************SDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEE***********************************************************************************************************K****************************************************************************************************************************************************************************************************************************************************************************************************************************************************E*LINKQTTINQLKPALLKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVRK*************************************************************************************************************************LE****AEGGLGTEVKSSLQAT**********TSE**GDASLGEDSSSLKNFPVGNEGAHDEGSVDSGKVPGIMKCGRGQINLEEDLNEGSFDVEKVPDIMESGRDQINLERDLNKGTFDADKIPVITKS*RDQINLERDLNESIVDGKIVPDKIKSGRDQINLERDLNEGSVDAKNVMMDIVKRVRARFNLVRDLNDRGVTAEKLPDIVKSDRDQIDLERDLKEGRYMNAETSLDRNLNFKGLNHQQFHHGNSPHLDLMETAAASSCGTSQKMPWNEAFLDGESSSKKLKTGFAGPYECS*********************SSSNQEKISEELLDRKVILKDLESPERYFFHVDSHRENDCRLGANSMPWKELSSKDEDELLDTVPNLNLALGADTKQPNKGMLPFFVGPLE*****DRPPDKGADKGAEEDISASLSLSLSFPFPDK*QTSVKPAS*TEQLLPERRHVNTSLLLFGGFL**
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MSRKNRMRAESGTCNVCFAPCSSCMHLNLALMGSKTEEFSDETCRETTGSQYSINEADDLRSFKRGPCNKLQQTASEASNPLSVNSSHDSFSVNAESKVTLRSSEISDASEDFEIHPKFSSRGGTAEGQISPKLEIGLDQRISLNKYDDPKGAEGLDDNISCVSRANDTSTALSENNRNMDIKNLSHSSASVCSLGPEGLEKAQSSEKLELSEIPSVEKVGASCGSPKVRSPVPDSQSDKRLVESSSDVLTKVHQKSEAETDRDNGEPPDEALKCLDKDKEELTSTQLAELPDVQRFPAASGDETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFxxxxxxxxxxxxxxxxxxxxxSTQSSGKRHAENLDAAPAAKRQAIETSPGYPKPLSPSKAAALSRDSSFKSLDKGKVRPVTFGNNSSNDVVETARSPGGLLPQTTKGTLLKSSSFSTLNSKAKVKLVDEVVPQKQKATRDQASLDVKEGPSRVMGKSMSFKSTSSGRSSAGESKLRALSPRPSRLHDLKGLKQVKERNAFERKSLSRLDRSLTVSSMATPASTPKADQKLTPRGEAVSFSSASNNREAKVVKSEGKGSTLTKSNSTLPRKGLEVSGTPVGALSTSAMCSSSVEQKPNLVSPKEEPSSSSSEKPSTIVNELVQDGLPRSVESTNQGEKSSSCRSRPTLTAGSKGVLCQKCKEVGHDVESCPLGSTQVSGIDVSAGRNCREGMIKGNKLKAAIEAAMHKLPGTYGRNKVNDQLDGLGITNMDLNCERSSQDQFSVSNKMKGAQEVLINKQTTINQLKPALLKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLPENCQRWNLLFFLWGVFRVRKVNCSNSTKHSCFAGSKMVPLDRVITTDNLSLSQNILPKHADKDSAACDTSHNIVPGSYGPDGTCVTLNENCDNKASSVQLTSLGSQSNSIQHDGRFDSRLLSRAAMTVPLLSGEIRCARPPLEECNLAEGGLGTEVKSSLQATRTSISCSKGGTSEMNGDASLGEDSSSLKNFPVGNEGAHDEGSVDSGKVPGIMKCGRGQINLEEDLNEGSFDVEKVPDIMESGRDQINLERDLNKGTFDADKIPVITKSGRDQINLERDLNESIVDGKIVPDKIKSGRDQINLERDLNEGSVDAKNVMMDIVKRVRARFNLVRDLNDRGVTAEKLPDIVKSDRDQIDLERDLKEGRYMNAETSLDRNLNFKGLNHQQFHHGNSPHLDLMETAAASSCGTSQKMPWNEAFLDGESSSKKLKTGFAGPYECSSSRDGDSCSDGFSSRRDDLCPSSSNQEKISEELLDRKVILKDLESPERYFFHVDSHRENDCRLGANSMPWKELSSKDEDELLDTVPNLNLALGADTKQPNKGMLPFFVGPLEKNNNQDRPPDKGADKGAEEDISASLSLSLSFPFPDKEQTSVKPASKTEQLLPERRHVNTSLLLFGGFLDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1585 2.2.26 [Sep-21-2011]
Q9DE132130 Bromodomain adjacent to z yes no 0.041 0.030 0.4 6e-07
Q9UIF82168 Bromodomain adjacent to z yes no 0.041 0.029 0.391 1e-06
A6H619 1682 PHD and RING finger domai yes no 0.032 0.030 0.423 2e-06
Q9P1Y6 1649 PHD and RING finger domai no no 0.032 0.030 0.423 2e-06
Q9NRL21556 Bromodomain adjacent to z no no 0.029 0.029 0.446 3e-06
O883791555 Bromodomain adjacent to z no no 0.029 0.029 0.425 7e-06
Q3UXZ9 1690 Lysine-specific demethyla no no 0.048 0.045 0.375 8e-06
Q5F3R21522 Lysine-specific demethyla no no 0.114 0.118 0.274 8e-06
P29375 1690 Lysine-specific demethyla no no 0.048 0.045 0.375 8e-06
Q80Y841544 Lysine-specific demethyla no no 0.037 0.038 0.409 1e-05
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1 Back     alignment and function desciption
 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 318  CDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEEC--KFAEETEK-QKQ 374
            C IC     E+LL +C  C  G  HTYC +  +  +P+GDW C  C  K + +T K +K 
Sbjct: 1898 CQICRKGDNEELLLLCDGCDKGC-HTYCHRPKITTIPDGDWFCPACIAKASGQTLKLKKL 1956

Query: 375  DIEGKRTNKQ 384
             I+GK++N+Q
Sbjct: 1957 QIKGKKSNEQ 1966




May play a role in transcriptional regulation.
Gallus gallus (taxid: 9031)
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3 Back     alignment and function description
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3 Back     alignment and function description
>sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2 Back     alignment and function description
>sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus GN=Baz1a PE=1 SV=3 Back     alignment and function description
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1585
2241460851539 predicted protein [Populus trichocarpa] 0.778 0.801 0.465 0.0
4494553381567 PREDICTED: uncharacterized protein LOC10 0.694 0.701 0.443 0.0
3564957801177 PREDICTED: uncharacterized protein LOC10 0.617 0.831 0.444 0.0
3574810331457 Bromodomain adjacent to zinc finger doma 0.863 0.938 0.384 0.0
4494743931116 PREDICTED: uncharacterized protein LOC10 0.596 0.846 0.463 0.0
3565403451149 PREDICTED: uncharacterized protein LOC10 0.603 0.832 0.436 0.0
2977372681382 unnamed protein product [Vitis vinifera] 0.512 0.587 0.500 0.0
147820730 1761 hypothetical protein VITISV_029609 [Viti 0.537 0.483 0.464 0.0
356541050966 PREDICTED: uncharacterized protein LOC10 0.557 0.914 0.423 0.0
2555898731087 hypothetical protein RCOM_2156040 [Ricin 0.487 0.710 0.462 0.0
>gi|224146085|ref|XP_002325874.1| predicted protein [Populus trichocarpa] gi|222862749|gb|EEF00256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1391 (46%), Positives = 817/1391 (58%), Gaps = 157/1391 (11%)

Query: 1    MSRKNRMRAESGTCNVCFAPCSSCMHLNLALMGSKTEEFSDETCRETTGSQYSINEADDL 60
            M RK R   ESGTCNVC APCSSCMHL LA MGSK +EFSDETCR T  SQYS N+ D L
Sbjct: 23   MRRKVRTSTESGTCNVCSAPCSSCMHLKLACMGSKGDEFSDETCRVTASSQYSNNDGDGL 82

Query: 61   RSFKRGPCNKLQQTASEASNPLSVNSSHDSFSVNAESKVTLRSSEISDASEDFEIHPKFS 120
             SFK    + LQ T SEASNPLSV+SSHDS S NAESKV  +SS+ +DAS + ++ PK S
Sbjct: 83   VSFKSRARDSLQHTTSEASNPLSVSSSHDSLSENAESKVNRKSSD-ADASAESQMRPKMS 141

Query: 121  SRGGTAEGQISPKLEIGLDQRISLNKYDDPKGAEGLDDNISCVSRANDTSTALSENNRNM 180
            S    AE Q SPK E   DQ+       D K  EG DDN+SCVSRAND S  +S  N+N+
Sbjct: 142  SGRAVAEDQFSPKAESFPDQKTFSKNNVDSKSEEGHDDNMSCVSRANDASKVVSYYNKNL 201

Query: 181  DIKN----------------LSHSSAS---------VCSLGPEGLEKAQSSEK--LELSE 213
            D+KN                 SH S S          CS  P+   K  SS      L E
Sbjct: 202  DMKNCLPSSALEVEGSGKAPFSHKSGSFETPSNDVDACSSSPKVQTKCLSSNSNGKHLDE 261

Query: 214  IPSVEKVGA--SCGSPKVR-------------------SPVPDSQSDKR--LVESSSDVL 250
             P++   G    C + +V                      + D+ ++ +  L   SS V 
Sbjct: 262  DPALHDHGKRFECPTEQVNLSLSKEASANIDCVGNLAAHNIADNNANGKSTLNADSSKVS 321

Query: 251  TKVHQKSEAETDRDNGEPPDEALKCLDKDKEELTSTQLAELPDVQR--FPAASGDETDES 308
             K++ K E E D D+G+  DE  KC D+ + +    +  EL D+Q     +ASGDE+DES
Sbjct: 322  CKINSKLELEADEDSGDQADEGFKCSDQVERKEKLNESDELADMQEPMLQSASGDESDES 381

Query: 309  DIMEQD-------------------VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEM 349
            +I+E D                   VKVCDICGDAGRED LAICSRC+DGAEH YCM+EM
Sbjct: 382  EILEHDNLFLHSLFNLLILHSGGLKVKVCDICGDAGREDFLAICSRCADGAEHIYCMREM 441

Query: 350  LQKVPEGDWLCEECKFAEETEKQKQDIEGKRTNKQSTSTQSSGKRHAENLDAAPAAKRQA 409
            LQK+PEGDWLCEECK AEE E QKQD E KR N    STQSSGKRHAE+++ A A KRQA
Sbjct: 442  LQKLPEGDWLCEECKLAEEAENQKQDAEEKRMN--VASTQSSGKRHAEHMELASAPKRQA 499

Query: 410  IETSPGYPKPLSPSKAAALSRDSSFKSLDKGKVR---PVTFGNNSSNDVVETAR-SPGGL 465
             E+S   PK  SPS+ AA+SRD+SFKSLDKGKV+     +FGN S+ D+ E AR S  G 
Sbjct: 500  TESSLASPKSCSPSRIAAVSRDTSFKSLDKGKVKIAHQTSFGNRSNIDIPEIARPSVNGP 559

Query: 466  LPQTTKGTLLKSSSFSTLNSKAKVKLVDEVVPQKQKATRDQASLDVKEGPSRVMGKSMSF 525
              QT KG LLKS SF+TLNSK KVKLVDE VPQK K  R ++SLD+KEG +R+M KSMSF
Sbjct: 560  HVQTPKGALLKSKSFNTLNSKMKVKLVDE-VPQKHKGAR-ESSLDMKEGAARMMRKSMSF 617

Query: 526  KSTSSGRSSAGESKLRALSPRPSRLHDLKGLKQVKERNAFERKSLSRLDR----SLTVSS 581
            KS SSGRSS  E K++ LS + S + D +GLKQVK+ +A +RK + RL R    S+T S+
Sbjct: 618  KSASSGRSSTNELKVKMLSSKFSHIQDSRGLKQVKDWDAVDRKKMLRLGRPPGSSMTSSA 677

Query: 582  MATPASTPKADQKLTPRGEAVSFSSASNNREAKVVKSEGKGSTLTKSNSTLPRKGLEVSG 641
            +    STPK DQ  TPRGE+V  SS  NNRE K  +S GK  TL++S S +  KG + S 
Sbjct: 678  V---VSTPKVDQGFTPRGESVIASSTGNNRELKSAQSNGKLGTLSRSTSNVGCKGADTSV 734

Query: 642  TPVGALSTSAMCSSSVEQKPNLVSPKEEPSSSSSEKPSTIVNELVQDGLPRSVESTNQGE 701
            T V A S + + S+S EQK N +SPK+EPSSSS    S     L QDGLPRS ES+NQGE
Sbjct: 735  TSVQASSKNGISSNSAEQKLNQISPKDEPSSSSWNAASNATENL-QDGLPRSRESSNQGE 793

Query: 702  KS---SSCRSRPTLTAGSKGVLCQKCKEVGHDVESCPLGSTQVSGIDVSAGRNCREGMIK 758
            K+   S  R RPT   G K V CQKCKE+ H  E+C + S   SG DVSA R  RE M K
Sbjct: 794  KARENSLSRLRPTGITGLKNVPCQKCKEICHATENCTVVSPLASGTDVSASRIPREEMSK 853

Query: 759  GNKLKAAIE-AAMHKLPGTYGRNKVNDQLDGLGITNMDLNCERSSQDQFSVSNKMK---- 813
            G KLKAAIE AAM K PG Y + K  DQ DGL  +N+D + E +SQDQ SV NK+     
Sbjct: 854  GRKLKAAIEAAAMLKKPGIYRKKKEIDQSDGLSSSNVDESGEMASQDQLSVLNKLSEGTD 913

Query: 814  ------GAQEVLINKQTTINQL----------------------------------KPAL 833
                  GA      K T IN +                                  K  L
Sbjct: 914  EGQANIGASSSEFCKSTIINNVKQLNEHSNDAVCPFKVGSDSIAPYLGTSVHASAEKSVL 973

Query: 834  LKISAVPEHEYIWQGGFEVHRGEKLPNLCDGIQAHLSSCASSKVLEVVSKFPQRIRLKEV 893
             K+SA+PEHEYIWQG FEVHR EK+ +L DGIQAHLS+CAS KVL+VVSKFPQ+I+L EV
Sbjct: 974  TKMSAIPEHEYIWQGVFEVHRAEKVVDLYDGIQAHLSTCASPKVLDVVSKFPQKIKLDEV 1033

Query: 894  PRVSTWPTMFHESGAKEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELL 953
            PR+STWP  F  +GAKEENIALYFFAK+FESY  NYK L+D+M+K DLAL G+ +G+E  
Sbjct: 1034 PRISTWPRQFLVTGAKEENIALYFFAKNFESY-ENYKRLLDNMIKKDLALKGSFEGVEFF 1092

Query: 954  IFPSNQLPENCQRWNLLFFLWGVFRVRKVNCSNSTKHSCFAGSKMVPLDRVITTDNLSLS 1013
            IFPS QLPEN QRWN+L+FLWGVFR R+ +CS+S K         VP D+ I    ++ S
Sbjct: 1093 IFPSTQLPENSQRWNMLYFLWGVFRGRRSDCSDSFKKLVMPSLNGVPRDKDIPAAVMTSS 1152

Query: 1014 QNI-LPKHADKDSAACDT--SHNIVPGSYGPDGTCVTLNENCDNKASSVQLTSLGSQSNS 1070
            +N+ +P+   K+++ACD+  S ++   +  P+   V+LN N D+K          SQ+N 
Sbjct: 1153 ENLCVPECIVKNTSACDSPCSSDVHLAANAPEKPSVSLNGNSDDKV-------FNSQTNL 1205

Query: 1071 IQHDGRFDSRLLSRAAMTVPLLSGEIRCARPPLEECNLAEGGLGTEVKSSLQATRTSISC 1130
             + DG+ DSR L++   +      E RC+ P LEE       L  + K   + TRT+   
Sbjct: 1206 EKQDGKVDSRSLTKIRGSSTPWCPEARCSSPSLEEVGPPRCSLDVDPKPCTEVTRTNSVS 1265

Query: 1131 SKGGTSEMNGDASLGEDSSSLKNFPVGNEGAHDEGSVDSGKVPGIMKCGRGQINLEEDLN 1190
                     G + LGED    K F VG++ +         K+       +  I +E DLN
Sbjct: 1266 DVKEIQIHEGASCLGED-MPFKIFGVGSQNSGCRRIFGEDKIVDRTFSDKDNIIVERDLN 1324

Query: 1191 EGSFDVEKVPDIMESGRDQINLERDLNKGTFDADKIPVITKSGRDQINLER-DLNESIVD 1249
            E + +++     +E+   +   +R      + +D  P+I+ S   +    + D N ++VD
Sbjct: 1325 EDNVNID-----VETFSGKGPRKRPF---LYLSDTAPLISSSMTQKAPWNKADNNNTLVD 1376

Query: 1250 GKIVPDKIKSG 1260
            G+ +  K+K+G
Sbjct: 1377 GESISKKLKTG 1387




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455338|ref|XP_004145410.1| PREDICTED: uncharacterized protein LOC101208726 [Cucumis sativus] gi|449515520|ref|XP_004164797.1| PREDICTED: uncharacterized LOC101211560 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495780|ref|XP_003516751.1| PREDICTED: uncharacterized protein LOC100806749 [Glycine max] Back     alignment and taxonomy information
>gi|357481033|ref|XP_003610802.1| Bromodomain adjacent to zinc finger domain protein 2B [Medicago truncatula] gi|355512137|gb|AES93760.1| Bromodomain adjacent to zinc finger domain protein 2B [Medicago truncatula] Back     alignment and taxonomy information
>gi|449474393|ref|XP_004154159.1| PREDICTED: uncharacterized protein LOC101211560, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356540345|ref|XP_003538650.1| PREDICTED: uncharacterized protein LOC100806639 [Glycine max] Back     alignment and taxonomy information
>gi|297737268|emb|CBI26469.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147820730|emb|CAN63105.1| hypothetical protein VITISV_029609 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541050|ref|XP_003538996.1| PREDICTED: uncharacterized protein LOC100784908 [Glycine max] Back     alignment and taxonomy information
>gi|255589873|ref|XP_002535114.1| hypothetical protein RCOM_2156040 [Ricinus communis] gi|223524008|gb|EEF27270.1| hypothetical protein RCOM_2156040 [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1585
TAIR|locus:2029147431 AT1G43770 "AT1G43770" [Arabido 0.085 0.313 0.387 1.3e-22
TAIR|locus:2141010187 AT4G17850 [Arabidopsis thalian 0.070 0.593 0.357 2.6e-13
UNIPROTKB|E2RP592073 BAZ2B "Uncharacterized protein 0.079 0.060 0.297 5.7e-08
TAIR|locus:2159396227 AT5G61100 [Arabidopsis thalian 0.052 0.365 0.333 6.4e-08
UNIPROTKB|E2RP612169 BAZ2B "Uncharacterized protein 0.079 0.058 0.297 6.9e-08
UNIPROTKB|F1P2F72125 BAZ2B "Bromodomain adjacent to 0.078 0.058 0.305 1.2e-07
UNIPROTKB|E1C3I82126 BAZ2B "Bromodomain adjacent to 0.078 0.058 0.305 1.2e-07
UNIPROTKB|Q9DE132130 BAZ2B "Bromodomain adjacent to 0.078 0.058 0.305 1.2e-07
UNIPROTKB|Q9UIF82168 BAZ2B "Bromodomain adjacent to 0.079 0.058 0.297 4e-07
UNIPROTKB|F1NRC41510 KDM5B "Lysine-specific demethy 0.109 0.114 0.291 6e-07
TAIR|locus:2029147 AT1G43770 "AT1G43770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 238 (88.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 55/142 (38%), Positives = 81/142 (57%)

Query:   845 IWQGGFEVHRGEKLPNLC--DGIQAHLSSCASSKVLEVVSKFPQRIRLKEVPRVSTWPTM 902
             IW+G   V  G    N C  DGI AH+SS A  KV E  S    R+  + +PR+  WP  
Sbjct:   292 IWRGLMSVKGG----NSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKT 347

Query:   903 FHESGA-KEENIALYFFAKDFESYGRNYKILVDSMMKNDLALMGNLDGIELLIFPSNQLP 961
             F ++G  K+E++AL+FF     +  + +  LVD M KND A+   L+  ELL+F S  LP
Sbjct:   348 FLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYMLP 407

Query:   962 ENCQRWNLLFFLWGVFRVRKVN 983
             ++   +N  ++LWGVF+ R+ +
Sbjct:   408 KDSWTFNSKYYLWGVFKPRQTS 429


GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2141010 AT4G17850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RP59 BAZ2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2159396 AT5G61100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RP61 BAZ2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2F7 BAZ2B "Bromodomain adjacent to zinc finger domain protein 2B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3I8 BAZ2B "Bromodomain adjacent to zinc finger domain protein 2B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DE13 BAZ2B "Bromodomain adjacent to zinc finger domain protein 2B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UIF8 BAZ2B "Bromodomain adjacent to zinc finger domain protein 2B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRC4 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1585
pfam0062851 pfam00628, PHD, PHD-finger 3e-06
smart0024947 smart00249, PHD, PHD zinc finger 5e-06
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 317 VCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQ--KVPEGDWLCEECKFA 366
            C +CG    +  L +C  C     H  C+   L+  ++PEG+W C ECK  
Sbjct: 1   YCAVCGKVDDDGELLLCDGCDRWF-HLACLGPPLEPEEIPEGEWYCPECKPK 51


PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1585
KOG1244336 consensus Predicted transcription factor Requiem/N 99.87
KOG1512381 consensus PHD Zn-finger protein [General function 99.69
KOG4443694 consensus Putative transcription factor HALR/MLL3, 99.1
KOG08251134 consensus PHD Zn-finger protein [General function 99.0
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.38
KOG4299613 consensus PHD Zn-finger protein [General function 98.25
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 98.06
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.01
KOG1973274 consensus Chromatin remodeling protein, contains P 97.84
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 97.79
KOG0383696 consensus Predicted helicase [General function pre 97.78
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.68
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 97.45
KOG0957707 consensus PHD finger protein [General function pre 97.37
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.28
KOG0954893 consensus PHD finger protein [General function pre 96.86
COG5141669 PHD zinc finger-containing protein [General functi 96.65
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 96.34
KOG0956900 consensus PHD finger protein AF10 [General functio 95.68
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 94.57
KOG14731414 consensus Nucleosome remodeling factor, subunit NU 92.67
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 91.04
KOG14731414 consensus Nucleosome remodeling factor, subunit NU 90.92
KOG0954893 consensus PHD finger protein [General function pre 89.92
KOG4299613 consensus PHD Zn-finger protein [General function 88.9
KOG4443694 consensus Putative transcription factor HALR/MLL3, 88.55
KOG0957707 consensus PHD finger protein [General function pre 86.8
KOG1244336 consensus Predicted transcription factor Requiem/N 86.23
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 84.3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
Probab=99.87  E-value=8.5e-24  Score=230.19  Aligned_cols=108  Identities=24%  Similarity=0.539  Sum_probs=101.9

Q ss_pred             cccccccccccccccccCCCCCCCCCCceecCCC--CCCccCCccCcCCC-cccCCCCcCCCCCCccccccccccccccc
Q 000390          245 SSSDVLTKVHQKSEAETDRDNGEPPDEALKCLDK--DKEELTSTQLAELP-DVQRFPAASGDETDESDIMEQDVKVCDIC  321 (1585)
Q Consensus       245 ~Ts~~~C~~C~~tee~nd~d~~gqpEeLL~Cs~C--s~H~sCLd~~~e~~-~ikky~WQs~DE~d~~DCi~~DckvC~VC  321 (1585)
                      .-++.+|.||++....|++  .+.||+||+|++|  ++||+||+++..|. .+++|.||         |+  +|+.|.+|
T Consensus       221 a~Pn~YCDFclgdsr~nkk--t~~peelvscsdcgrsghpsclqft~nm~~avk~yrwq---------ci--eck~csic  287 (336)
T KOG1244|consen  221 AQPNPYCDFCLGDSRENKK--TGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQ---------CI--ECKYCSIC  287 (336)
T ss_pred             ccCCcccceeccccccccc--cCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheee---------ee--ecceeccc
Confidence            5678899999999888886  8999999999999  89999999999988 78889999         87  99999999


Q ss_pred             cCCCCCCCceeeCCCCCCCCCccccCcccCCCCCCCccCccCccc
Q 000390          322 GDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFA  366 (1585)
Q Consensus       322 g~~gded~LLlCD~CDrGaYH~yCL~PPL~eVPeGdW~Cp~C~~~  366 (1585)
                      |..+++++|||||.|||| ||||||.|||-+.|+|.|.|..|...
T Consensus       288 gtsenddqllfcddcdrg-yhmyclsppm~eppegswsc~KOG~~  331 (336)
T KOG1244|consen  288 GTSENDDQLLFCDDCDRG-YHMYCLSPPMVEPPEGSWSCHLCLEE  331 (336)
T ss_pred             cCcCCCceeEeecccCCc-eeeEecCCCcCCCCCCchhHHHHHHH
Confidence            999999999999999999 89999999999999999999999754



>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1585
1f62_A51 Wstf-Phd Length = 51 2e-04
2e6r_A92 Solution Structure Of The Phd Domain In Smcy Protei 4e-04
>pdb|1F62|A Chain A, Wstf-Phd Length = 51 Back     alignment and structure

Iteration: 1

Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 318 CDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFA 366 C +C G +D L +C C+ A H +C++ L +VP+G+W C C+ A Sbjct: 3 CKVCRKKGEDDKLILCDECNK-AFHLFCLRPALYEVPDGEWQCPACQPA 50
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1585
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 3e-14
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 4e-13
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 3e-12
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 9e-11
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 2e-10
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 3e-10
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 4e-10
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 4e-10
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 5e-10
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 1e-08
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 8e-10
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 1e-09
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 1e-09
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 2e-09
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 4e-09
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 5e-09
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 1e-08
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 2e-08
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 4e-08
2yt5_A66 Metal-response element-binding transcription facto 1e-07
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 1e-06
2k16_A75 Transcription initiation factor TFIID subunit 3; p 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 8e-04
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
 Score = 68.8 bits (168), Expect = 3e-14
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 300 ASGDETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWL 359
            S   +  S     D  +C +C     +D L  C  C D   H +C+   L ++P G W 
Sbjct: 1   GSSGSSGHSSAQFIDSYICQVCSRGDEDDKLLFCDGC-DDNYHIFCLLPPLPEIPRGIWR 59

Query: 360 CEECKFAEETEKQKQDIEGKRTNKQSTSTQSSG 392
           C +C  AE  +  +     + T + S S  SSG
Sbjct: 60  CPKCILAECKQPPEAFGFEQATQEYSLSGPSSG 92


>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1585
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 1e-12
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 2e-12
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 5e-09
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 8e-08
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 7e-07
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 2e-05
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 2e-05
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 3e-05
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 6e-05
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 6e-05
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 310 IMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEET 369
            ++    +C +C   G    L +C++C +   H  C    LQ VP  +W C  C    + 
Sbjct: 2   TLDDSATICRVCQKPGD---LVMCNQC-EFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 57

Query: 370 EKQKQDIEGKRTN 382
           +++  D++  + N
Sbjct: 58  KEEDVDLQACKLN 70


>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1585
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.09
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.96
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.75
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.55
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.38
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.97
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.91
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.67
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.47
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.34
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.77
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 93.43
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 91.62
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 90.22
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 87.12
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09  E-value=3.8e-11  Score=87.22  Aligned_cols=52  Identities=29%  Similarity=0.760  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             53223212677889880662879999887666572349999998438647553100
Q 000390          314 DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEET  369 (1585)
Q Consensus       314 DCk~C~VCg~~gdEd~LLLCD~CDrGaYHlyCL~PPL~eVPeGdW~Cp~C~~~~~c  369 (1585)
                      .|.+|.+|++.++   ||+||.|+++ ||++|+.|||..+|.++|+|+.|......
T Consensus         6 ~c~~C~~C~~~~~---ll~Cd~C~~~-~H~~C~~p~l~~~p~~~W~C~~C~~~~~~   57 (70)
T d1fp0a1           6 SATICRVCQKPGD---LVMCNQCEFC-FHLDCHLPALQDVPGEEWSCSLCHVLPDL   57 (70)
T ss_dssp             SSSCCSSSCSSSC---CEECTTSSCE-ECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred             CCCCCCCCCCCCE---EEECCCCCHH-HCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             9799877799697---8889999915-63514899868488989899679483766



>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure