Citrus Sinensis ID: 000400

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------

MAAAESSLKRPTKRKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK

ccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEcccccEEEccccccccccccEEEEEEEcccccHHccccccccccccHHHHHHccccccHHHHHHHHHccccHHccccccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccEEEEEEEEccccEEEEEEEEHHHHHHcccccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEHHHHHHcccccccccccccccccEEEEEEEcccccccccHHHHHHHHHcccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHEEEcEEEccccccccccccccccccHHHHHHHHHccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEccccccEEEEccccccccccccccEEEEEEEEEccEEEccccEEEEEcccccccccccEEEEEEEEEEEcccccccccEEEEEEEcccccccccEEEEccccccccccccEEEEcEEEcccccccccHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEcccEEEEEEEEEEcccccccEEEEEccEEcccccccccccEEEEccccccccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEcccccccEEEEEcccccccEEEEccccccccccccccccEEEEccccEEEEEcccEEEEcccccEEEEEEEEEcccccccccccccEEEEEEccccccEEEEEEEEEcccccEEEEcccccccccccccEEEEEcccccEEEEEEEcEEEccccccEEccccccccccccccEEEEccccEEEEEEEEcccEEEEEccccccEEEcccccccccccccccccEEEEEEEcccccccccccccccccccEEEEEEcccccccccccEEEEccEEEccccccccccccEEEEEEEEcccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHcccccccccccccccccccEEEEEEEEEEEcccHHHHHHHHHccccEEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEcccccccccHHHHHccccEEEEEHHHHHHHcccccccEEEEcccEEccccEEEEccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccccccccEEEEEcccccccccccccEEcccEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccEEEEcccccEEEEEccccccEEEEEHHHccccccEEEEEEccccccccHcHccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEcccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEEEccccEEEEEEEEcHHHHHcccccccccccccccccccHHHHHccccccEEEEEEEcccccHHcHHHHHHHHHHcccEEEEcccccccccccccEEEEEccccHHHccccEEEEEccccccccEEEEEEEEEEEccccEccccccccHcHccEEEEEEEcccccccccHHHHHHHHHHccccccccccccccEEEEEccccccHHHHccccccccccccccHHHHHHHHHHEEEEEEEccccccccccHHHHHcccHHHHHHHHcccccccccccEEEEEEEcccEccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHccccccHEHHHHHEEcccccccccccEEEEcccccccccccEEEEEEEEEEEccccccccEEEEEEEccccccccccEEEEEccccEEEEcccEEEcEEEEccccEEEccHHHHHHHHHHHHcccccEEEEcccccHHHcccccccccccccccccccEEEEEEEcccccccccccccccEEEEEcccEEEEEEEEccccccccccEEEEEEEEcccccccccEEEEEccccccHHHHHcccEEEEEEEEcccccccccEEEEEEccccccEEEEcccccccccEEEEccccccEEEEEEcccccccccccccEEEEEEcccEEEEEEccEEEEEEccccEEEEEEEEEEcccHHHccccccEEEEEEEcccccEEEEEEEEcccccEEEEEccccHHccccccEEEEEEEEcccEEEEEEEEEEEEcccccEEEEccccEEEccHHHEHHcccccEEEEEEEccccEEEEEEEHHHHHHHHHHHccccccccccEEEEEEEEEEEccccccccEccccccccEEEEEEEcccccHHccEEEEEEccEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEEccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccEccccHHHHHHHHccccccccEEEEEEccccccccccccccHHHHccccccccccccccccccEEEEEEEEccHcHcEEEccccccHHHHHHHHHHHHcEEEccHHHHHHHcHHcccccEEEcccEEccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

maaaesslkrptkrklentpydrdealpnkkfirgqcrykfkilfpngatidlllidpkhkmavTDFICLVKDEYFKSWMRHDSMKRKRkinwnggnlyvedanlnkisdtinfemfepskchilklydgsgeiAKTFenmwdltpdtdllrelpedytFETALADLIDNSLQAVWTNAKNERRLISVniaedkisvfdtgpgmdstdensivkwgKMGASLHRASkaqgiggkppyltpffgmfgyggpiasmhLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAEltwrtnggirfpskdeiadsphgsftkveiwepklksldvkplgcklkdiyfpyiqcdeisstgkttrpiefqvngidlaevaggEVAItnmhscngpDFILQLHFSLrqasattnspgsrpskeanARLKFvyfpvteegesIDIIMNKLISEgcvaaanydtrsrvSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCfidtdagfnptpsktdlahQNLYTIALKNfgaktfkeekDVTVEIRrdgklltpIQLEKDYQEWLLNMHDhydaekdcgvdqpillvghknikplvisTDVARVHKVVKKkgamwksgqKVKLLKGAYagihnndvYATIEYFVIEglqgdaggeariicrplavpdekgcvlAVNNgnaslhigsslslpigvidsekcvpvnknvWDQQLEKYRQKSPSTIELLKETQCqeleidgvlpssaiagqnppreivavvrpasfisssasKNLVQKYIVKNSSEMLMEVKFKcedenledvvplytarvapssrkgyqgLYIFEVGckfpklfqnagaytfsfhLTETSCKSCEKKVLVKgssevgkwklldtkerpelrvrvgsflpplsvacydiydnripfeskpqflvkikpskiikvedklkwnlspdkltlNIQDILVASSkldeirpdyrATLVisskdkpvsvsipcrvtpgslknvavhpqnlgillpGSVIKMLKlekglevelnvdgfciedqlglrrkvdgygcidlsgllkvkagygknvslsvlsdngvifkqdfQTEKRELRVisgvpecctvgsqledITFEivdskgavdvtihdddksgqshtltiksdvintENSIRYAFRqgrctvpaislpqnegcfcfVATHSQYTELNISIkvpivrapklesddirtpcsdgkvfllegpspikhvgnhmVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVsvepyslltKEEIIRRIKSIYQSAASVICcstkeflcskprsnfmedvvgPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKyeqdgtidrKCALHATAAALGKSIDGRYLVICLegirpysgkfgsndpqrklalpaptlpkgnipagfVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIrhgavsldggilkedgiislgcgnpticfpivrtRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK

maaaesslkrptkrklentpydrdealpnkkfirgQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSwmrhdsmkrkrkinwnggnlyVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAknerrlisvniaedkisvfdtgpgmdstDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWrtnggirfpskdeiadsphgsftkveiwepklksldvkPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASAttnspgsrpskeanaRLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKnfgaktfkeekdvtveirrdgklltpiqLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKnikplvistdvaRVHKVVkkkgamwksgqkvKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLpssaiagqnPPREIVAVVRPasfisssasknlvQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTarvapssrkgYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLvkgssevgkwklldtkerpelrvrvgsflpplsVACYDIYDNripfeskpqflvkikpskiikvedklkwnlspdkltlnIQDILVasskldeirpDYRATlvisskdkpvsvsIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSlsvlsdngviFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIhdddksgqshtltiksdvinteNSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLegpspikhvgnHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSklqvsvepyslltKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAalgksidgRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKlknsedkfnsfmdlwqtslk

*****************************KKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDT***********IVKWGKMGASL******QGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPS********HGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSL********************RLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKY*******IELLKETQCQELEIDGVLP***********EIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHD*******HTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKF**************TLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLI*********************************

*******************************FIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYF***************NWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKW***********************TPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTN*****************SFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDE************FQVNGIDLAEVA****************FILQLHFSLRQASATTNSP*SRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMD*************KFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKN***************I*RDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHK*****VISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQL****QKSPSTIELLKETQCQELEIDGVLPSSAI******************************YIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKP*************LSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDF***********GVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAP****************************************E*****RNYGLCIGRHE**********************************************ASVICC****************DVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFG**D***KLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPI********************************************************LWQTS**

*************RKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQ**************EANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK

************KRKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMD*T*ENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTS**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MAAAESSLKRPTKRKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCxxxxxxxxxxxxxxxxxxxxxxxxxxxxVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIxxxxxxxxxxxxxxxxxxxxxxxxFNSFMDLWQTSLK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1566
302143908		1718	unnamed protein product [Vitis vinifera]	0.833	0.759	0.525	0.0
297812599		1607	predicted protein [Arabidopsis lyrata su	0.948	0.924	0.468	0.0
334187894		1598	gamma-irradiation and mitomycin c induce	0.945	0.926	0.455	0.0
10177088		1634	unnamed protein product [Arabidopsis tha	0.945	0.906	0.448	0.0
359490805		1887	PREDICTED: uncharacterized protein LOC10	0.508	0.421	0.610	0.0
147767611		1459	hypothetical protein VITISV_043621 [Viti	0.505	0.542	0.548	0.0
357436479		1675	hypothetical protein MTR_1g008050 [Medic	0.445	0.416	0.553	0.0
147779006		1117	hypothetical protein VITISV_039356 [Viti	0.410	0.575	0.491	1e-176
357436465		521	hypothetical protein MTR_1g007950 [Medic	0.300	0.904	0.577	1e-158
357436467		1009	hypothetical protein MTR_1g007990 [Medic	0.436	0.677	0.442	1e-153

>gi\|302143908\|emb\|CBI23013.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1398 bits (3618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/1389 (52%), Positives = 939/1389 (67%), Gaps = 84/1389 (6%)

Query: 238  LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGG 297
              PFFGMFGYGGPIASMHLGR ALVSSKTK SK+VYTLHLE+EAL+  S ++LTWRT+GG
Sbjct: 335  FKPFFGMFGYGGPIASMHLGRCALVSSKTKESKKVYTLHLEREALLSSSGSDLTWRTSGG 394

Query: 298  IRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQ--------CDEI 349
            IR PS++E   SPHGSFTKVEI++PK++ L+V  L  KLKDIYFPYIQ        CDE+
Sbjct: 395  IRNPSEEETEKSPHGSFTKVEIFKPKIERLNVFQLQRKLKDIYFPYIQVAIGGVVQCDEV 454

Query: 350  SSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGS 409
              TGKT  P+EFQVNG+DLAE+ GGEV  TN+HS NGP+F+LQL F   Q +  T SPG 
Sbjct: 455  CDTGKTNTPVEFQVNGLDLAEIDGGEVGTTNLHSSNGPEFVLQLRFYGNQDNVATKSPGL 514

Query: 410  RPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDV 469
            R S+EANARLK VYFP+ E  E+++ I+ KL +EGC    NYDT SRVSIRRLGRLLPD 
Sbjct: 515  RSSQEANARLKCVYFPIVEGKENLETILEKLEAEGCGTNENYDTFSRVSIRRLGRLLPDA 574

Query: 470  HWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNF 529
             W+ LP M+ + +KG+K  LLK+ C RVKCFIDTDAGFNPTPSKTDLAH N +T ALK+F
Sbjct: 575  RWSLLPFMEHKLKKGDKGQLLKRCCRRVKCFIDTDAGFNPTPSKTDLAHHNPFTKALKDF 634

Query: 530  GAKTFKEEK-DVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGH 588
            G K  ++ + ++ VEI RDGK LT +QLEK+Y +W+  MHD YD E D G DQP+++VG 
Sbjct: 635  GNKPPEKGRGNINVEILRDGKSLTLLQLEKEYLDWISQMHDLYDEEIDSGEDQPVIVVGS 694

Query: 589  KNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQ 648
             N K L IS+DV RVH+++++KG  WK GQK+K+LKGA  G H ++V+AT+EY ++EG Q
Sbjct: 695  LNKKQLGISSDVVRVHEIIRRKGKSWKRGQKIKVLKGACPGCHKSNVFATLEYILLEGFQ 754

Query: 649  GDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWD 708
            GDAGGEAR+ICRPL++PDE GC+LAV++G AS     SLSLPI VIDS KC+ V  + W 
Sbjct: 755  GDAGGEARLICRPLSLPDEDGCILAVDDGAASFDCRGSLSLPISVIDSGKCLAVESSEWL 814

Query: 709  QQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAI--AGQNPPREIVAVVRPASFISSS 766
             QLEK RQK+PSTI++L E  C ELE+DG LP  A   AGQ PP+EIVAVVRPASF+S  
Sbjct: 815  FQLEKQRQKAPSTIDILSERHCLELEVDGALPVDAPVHAGQVPPKEIVAVVRPASFLS-- 872

Query: 767  ASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCK 826
                              MEVK     +  +D   +Y+  V PSSR G+ GLYIF +GCK
Sbjct: 873  ------------------MEVKLM---DGTKDTKHIYSKCVTPSSRNGFHGLYIFPLGCK 911

Query: 827  FPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLP 886
            FP+LFQ AG YTF+  L  +S KSCEK+VLVK   +V  W+     +     VR GS LP
Sbjct: 912  FPQLFQKAGVYTFTVFLKGSSFKSCEKRVLVKALPKVSSWRFSSDIQNTVYSVRAGSCLP 971

Query: 887  PLSVACYDIYDNRIPFESKPQFLVKIK-PSKIIKVEDKLKWNLSPDKLTLNIQDILVASS 945
            P S+ACYD Y+N+IPF S P+F++K      ++   DK+K  LS D LTL ++D+L+ SS
Sbjct: 972  PFSIACYDSYENQIPFTSIPEFIIKSNWNGGVLADFDKMKLELSSDNLTLKVKDVLIESS 1031

Query: 946  KLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSL-KNVAVHPQNLGILLPGSVIKMLKL 1004
             LD+IRP Y  TLV+  +D+  S+S+ C V PG L + +A  P +   LLPG VI+ L L
Sbjct: 1032 DLDKIRPSYATTLVLCPRDELPSISVACEVNPGPLERAIAQPPVSDNQLLPGCVIEELVL 1091

Query: 1005 E---------------------------------------KGLEVELNVDGFCIEDQLGL 1025
            E                                       +GLEV+ NVDGFC +D  GL
Sbjct: 1092 EVSSHIVIILPHDDQFIHTIVLCMLFLPLFMFDAYGNHAREGLEVQFNVDGFCFQDHNGL 1151

Query: 1026 RRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCT 1085
            +RKVD  GCIDLSGLL+V  GYGKNVSLSVLS N V+FKQ+ QTEKRELR  S VP+ C 
Sbjct: 1152 KRKVDDRGCIDLSGLLRVTTGYGKNVSLSVLSGNKVVFKQELQTEKRELRAASIVPQSCA 1211

Query: 1086 VGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVP 1145
             GSQLE+I FEI++SKG VD T+H+++K GQ HTLTI SD    + S+R+AFR GRC +P
Sbjct: 1212 AGSQLENIVFEIINSKGEVDETVHEEEKHGQFHTLTIMSDSFYLDGSVRFAFRNGRCIIP 1271

Query: 1146 AISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPI 1205
             I LP+ +G F F+A HS + EL++++KV +V   K++ +D++    +  + LL+     
Sbjct: 1272 TIPLPRKQGDFTFLAAHSCHPELSLAVKVSVVEVLKVKQEDVQLQYPNENMLLLQDSPAP 1331

Query: 1206 KHVGNHMV-PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPY 1264
            +HV N +V  +M    E+E ++   GL IG +E+ L+LL+ QK ++E+ + KLQ SVE  
Sbjct: 1332 RHVENSLVESLMNDEKEIEDDICKIGLFIGDNERKLELLHKQKGDIEQSIEKLQASVEYD 1391

Query: 1265 S-------LLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTV 1317
            S       L  KE ++R I+   +SAA+  C  ++E     P S  M+D+VG VAL+ TV
Sbjct: 1392 SFNNHRGYLSKKESVMRCIEKKDKSAAAFFCNLSREIPFQDPVSQLMKDIVGVVALLATV 1451

Query: 1318 CTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDG 1377
              N+L R LAEYLGE QMLA+VCRS+EAA  LEKYE DG +DR+ AL+A A   GK I+ 
Sbjct: 1452 RINRLGRMLAEYLGEDQMLAVVCRSYEAASKLEKYEWDGKVDREHALYAVAKTFGKPIND 1511

Query: 1378 RYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIR 1437
            R+LVICLE IRPY G F  NDPQRKL +P P LP G +P GF+GYAVNMV+L+ HH+  R
Sbjct: 1512 RFLVICLENIRPYIGGFQDNDPQRKLNIPNPILPTGEMPPGFLGYAVNMVDLESHHLLTR 1571

Query: 1438 TSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNP 1497
            T+AG+GLRETL Y LFG+LQVY+TR+DM +A    RHGAVSLDGGI+K +G+IS GC  P
Sbjct: 1572 TTAGHGLRETLFYCLFGELQVYQTREDMKKACFYARHGAVSLDGGIMKGNGVISFGCREP 1631

Query: 1498 TICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1557
             I FP+     S +++  L+ IEEK+  L  +   I +  K + K  +KL+    +    
Sbjct: 1632 QIWFPVANLE-SPKNVRILEVIEEKRTSLRLVHNEIGKLTKIINKAQKKLQKKISRCRKL 1690

Query: 1558 MDLWQTSLK 1566
            MD  +  +K
Sbjct: 1691 MDRLEPCMK 1699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297812599\|ref\|XP_002874183.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297320020\|gb\|EFH50442.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334187894\|ref\|NP_197816.3\| gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana] gi\|332005896\|gb\|AED93279.1\| gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|10177088\|dbj\|BAB10394.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|359490805\|ref\|XP_002272676.2\| PREDICTED: uncharacterized protein LOC100252197 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147767611\|emb\|CAN64522.1\| hypothetical protein VITISV_043621 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357436479\|ref\|XP_003588515.1\| hypothetical protein MTR_1g008050 [Medicago truncatula] gi\|355477563\|gb\|AES58766.1\| hypothetical protein MTR_1g008050 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|147779006\|emb\|CAN73471.1\| hypothetical protein VITISV_039356 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357436465\|ref\|XP_003588508.1\| hypothetical protein MTR_1g007950 [Medicago truncatula] gi\|355477556\|gb\|AES58759.1\| hypothetical protein MTR_1g007950 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357436467\|ref\|XP_003588509.1\| hypothetical protein MTR_1g007990 [Medicago truncatula] gi\|355477557\|gb\|AES58760.1\| hypothetical protein MTR_1g007990 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1566
TAIR\|locus:2082876		420	DMS3 "AT3G49250" [Arabidopsis	0.210	0.785	0.394	1e-49
DICTYBASE\|DDB_G0277185		2284	DDB_G0277185 [Dictyostelium di	0.070	0.048	0.298	3.3e-13

TAIR\|locus:2082876 DMS3 "AT3G49250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 531 (192.0 bits), Expect = 1.0e-49, P = 1.0e-49
 Identities = 138/350 (39%), Positives = 191/350 (54%)

Query:  1222 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVL-------SKLQVSVEPYS-----LLTK 1269
             LES++   G  I +HE  LK L  QK +++E +       SKL  S  P S      L  
Sbjct:    56 LESDLEAMGNKIKQHEDNLKFLKSQKNKMDEAIVDLQVHMSKLNSSPTPRSENSDNSLQG 115

Query:  1270 EEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFM--EDVVGPVALIGTVCTNKLSRTLA 1327
             E+I  +I     SAA V+  S  E L     S  M  + VVG VA +G V    LS+ L+
Sbjct:   116 EDINAQILRHENSAAGVL--SLVETLHGAQASQLMLTKGVVGVVAKLGKVNDENLSQILS 173

Query:  1328 EYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGI 1387
              YLG   MLA+VCR++E+  ALE Y+  G ID    LH   +++G+ I   +  ICLE +
Sbjct:   174 NYLGTRSMLAVVCRNYESVTALEAYDNHGNIDINAGLHCLGSSIGREIGDSFDAICLENL 233

Query:  1388 RPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRET 1447
             RPY G+  ++D QR+L L  P LP G  P GF+G+AVNM+ +D  ++   TS G GLRET
Sbjct:   234 RPYVGQHIADDLQRRLDLLKPKLPNGECPPGFLGFAVNMIQIDPAYLLCVTSYGYGLRET 293

Query:  1448 LLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCG---NPTICFPIV 1504
             L Y LF +LQVYKTR DMI A  CI  GAVSLDGGI+++ GI +LG     N     P  
Sbjct:   294 LFYNLFSRLQVYKTRADMISALPCISDGAVSLDGGIIRKTGIFNLGNRDEVNVRFAKPTA 353

Query:  1505 RTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKF 1554
                +   S EA K+++E K + +  ++ I+      E  +      +++F
Sbjct:   354 SRTMDNYS-EAEKKMKELKWKKEKTLEDIKREQVLREHAVFNFGKKKEEF 402

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006306 "DNA methylation" evidence=RCA;IMP

GO:0031047 "gene silencing by RNA" evidence=RCA;IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0016569 "covalent chromatin modification" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

DICTYBASE\|DDB_G0277185 DDB_G0277185 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1566
pfam13589		134	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr	1e-19

>gnl\|CDD\|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 26/157 (16%)

Query: 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNI--AEDKISVFDTGPGMDSTDENSIVKW 215
           YT E A+A+LIDNS+ A  TN K     IS++    ED IS+ D G GM       +   
Sbjct: 1   YTLEDAIAELIDNSIDADATNVK-----ISIDPDRGEDGISIEDNGGGM---SYEELRNA 52

Query: 216 GKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTL 275
            K+G S     +               G  G G  +AS+ LGR+  V+SK +   E  TL
Sbjct: 53  LKLGRSSKEGERDS----------TTLGRKGIGMKLASLSLGRKLTVTSKKE--GESSTL 100

Query: 276 HLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHG 312
            L+ + + +  + +L   T+       ++ +  + HG
Sbjct: 101 TLDLDDIDKEGEWDLPELTS----AEIEESLDKNSHG 133

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1566
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.79
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.77
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	99.71
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.69
KOG0933		1174	consensus Structural maintenance of chromosome pro	99.63
KOG0018		1141	consensus Structural maintenance of chromosome pro	99.6
PRK14083		601	HSP90 family protein; Provisional	99.53
PRK05218		613	heat shock protein 90; Provisional	99.52
KOG0964		1200	consensus Structural maintenance of chromosome pro	99.49
PF06470		120	SMC_hinge: SMC proteins Flexible Hinge Domain; Int	99.38
PTZ00130		814	heat shock protein 90; Provisional	99.31
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	99.25
COG0326		623	HtpG Molecular chaperone, HSP90 family [Posttransl	99.22
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	99.17
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	99.09
PTZ00272		701	heat shock protein 83 kDa (Hsp83); Provisional	99.01
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	98.76
KOG1979		694	consensus DNA mismatch repair protein - MLH1 famil	98.76
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.7
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	98.49
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	98.38
KOG1977		1142	consensus DNA mismatch repair protein - MLH3 famil	98.3
PRK04184		535	DNA topoisomerase VI subunit B; Validated	98.24
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	98.21
KOG0020		785	consensus Endoplasmic reticulum glucose-regulated	98.18
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	97.98
KOG0019		656	consensus Molecular chaperone (HSP90 family) [Post	97.91
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	97.9
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	97.88
smart00433		594	TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras	97.79
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	97.79
PRK05644		638	gyrB DNA gyrase subunit B; Validated	97.78
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	97.72
PRK14939		756	gyrB DNA gyrase subunit B; Provisional	97.64
TIGR01058		637	parE_Gpos DNA topoisomerase IV, B subunit, Gram-po	96.9
PLN03128		1135	DNA topoisomerase 2; Provisional	96.9
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	96.54
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	96.33
PTZ00108		1388	DNA topoisomerase 2-like protein; Provisional	96.29
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.19
PRK10604		433	sensor protein RstB; Provisional	96.09
COG3290		537	CitA Signal transduction histidine kinase regulati	96.09
PLN03237		1465	DNA topoisomerase 2; Provisional	96.07
COG0187		635	GyrB Type IIA topoisomerase (DNA gyrase/topo II, t	95.96
PRK10755		356	sensor protein BasS/PmrB; Provisional	95.93
PTZ00109		903	DNA gyrase subunit b; Provisional	95.91
PRK09470		461	cpxA two-component sensor protein; Provisional	95.79
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	95.68
PRK09467		435	envZ osmolarity sensor protein; Provisional	95.59
PRK10364		457	sensor protein ZraS; Provisional	95.59
PHA02569		602	39 DNA topoisomerase II large subunit; Provisional	95.35
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	95.3
PRK09303		380	adaptive-response sensory kinase; Validated	95.29
PRK11086		542	sensory histidine kinase DcuS; Provisional	95.21
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	95.06
COG0642		336	BaeS Signal transduction histidine kinase [Signal	94.99
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	94.94
PRK11360		607	sensory histidine kinase AtoS; Provisional	94.9
PRK10549		466	signal transduction histidine-protein kinase BaeS;	94.82
PRK11100		475	sensory histidine kinase CreC; Provisional	94.78
PRK15347		921	two component system sensor kinase SsrA; Provision	94.63
PRK10337		449	sensor protein QseC; Provisional	94.38
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	94.36
PRK10815		485	sensor protein PhoQ; Provisional	94.23
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	94.21
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	94.16
PRK09835		482	sensor kinase CusS; Provisional	94.13
COG4191		603	Signal transduction histidine kinase regulating C4	94.08
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	93.99
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	93.94
COG4585		365	Signal transduction histidine kinase [Signal trans	93.91
PRK11644		495	sensory histidine kinase UhpB; Provisional	93.87
PRK04069		161	serine-protein kinase RsbW; Provisional	93.75
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	93.71
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	93.6
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	93.48
PRK13837		828	two-component VirA-like sensor kinase; Provisional	93.13
PRK10490		895	sensor protein KdpD; Provisional	93.12
PRK10618		894	phosphotransfer intermediate protein in two-compon	93.03
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	92.76
PRK03660		146	anti-sigma F factor; Provisional	92.74
PRK11091		779	aerobic respiration control sensor protein ArcB; P	92.07
PRK10841		924	hybrid sensory kinase in two-component regulatory	92.06
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	91.89
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	91.79
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	91.64
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	91.57
PRK13560		807	hypothetical protein; Provisional	91.51
PRK10547		670	chemotaxis protein CheA; Provisional	90.95
PRK09959		1197	hybrid sensory histidine kinase in two-component r	90.54
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	89.41
PRK13557		540	histidine kinase; Provisional	89.0
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	86.6
COG2972		456	Predicted signal transduction protein with a C-ter	85.94
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	85.43
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	85.14
PRK04863		1486	mukB cell division protein MukB; Provisional	84.5
PRK13559		361	hypothetical protein; Provisional	83.4
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	83.14
COG3920		221	Signal transduction histidine kinase [Signal trans	82.17

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

Probab=99.79  E-value=4.9e-19  Score=232.82  Aligned_cols=141  Identities=26%  Similarity=0.394  Sum_probs=121.2

Q ss_pred             CCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000400         1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1383 (1566)
Q Consensus      1304 ~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1383 (1566)
                      ++||+|+|+.|++|+ +.|.+||+.++|++ ++.||+.|...|+.++.|+++.+                  .||+||||
T Consensus       514 ~~Gv~G~v~~li~v~-~~y~~Aie~alG~~-l~~vVV~~~~~a~~~i~~lk~~~------------------~gr~tflp  573 (1163)
T COG1196         514 LPGVYGPVAELIKVK-EKYETALEAALGNR-LQAVVVENEEVAKKAIEFLKENK------------------AGRATFLP  573 (1163)
T ss_pred             CCCccchHHHhcCcC-hHHHHHHHHHcccc-cCCeeeCChHHHHHHHHHHhhcC------------------CCccccCc
Confidence            799999999999997 59999999999985 89999999999999999995555                  99999999


Q ss_pred             cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccccccccccccccCCCcchhHHHhhhccceeeecHH
Q 000400         1384 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1463 (1566)
Q Consensus      1384 L~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretlf~~vfg~t~Vy~Tre 1463 (1566)
                      |+.|++.+..              +...    .+||+|||+|+|+|||+|.            .+|+++||+|.|+   +
T Consensus       574 l~~i~~~~~~--------------~~~~----~~g~~~~a~dli~~d~~~~------------~~~~~~l~~t~Iv---~  620 (1163)
T COG1196         574 LDRIKPLRSL--------------KSDA----APGFLGLASDLIDFDPKYE------------PAVRFVLGDTLVV---D  620 (1163)
T ss_pred             hhhhcccccc--------------cccc----ccchhHHHHHHhcCCHHHH------------HHHHHHhCCeEEe---c
Confidence            9999985432              1111    5899999999999999996            7999999999997   5


Q ss_pred             hHHHHHhhccCc-----eEEecCCeeeccceEeeCCCCC
Q 000400         1464 DMIEAHTCIRHG-----AVSLDGGILKEDGIISLGCGNP 1497 (1566)
Q Consensus      1464 ~m~~A~~~i~~~-----~VTLDG~li~~~G~~tgG~~~~ 1497 (1566)
                      +|+.|+.++...     +|||||++++++|+||||++.+
T Consensus       621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~  659 (1163)
T COG1196         621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNK  659 (1163)
T ss_pred             CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccc
Confidence            677788885443     8999999999999999996543

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins	Back alignment and domain information

>PTZ00130 heat shock protein 90; Provisional	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>smart00433 TOP2c TopoisomeraseII	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK14939 gyrB DNA gyrase subunit B; Provisional	Back alignment and domain information

>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive	Back alignment and domain information

>PLN03128 DNA topoisomerase 2; Provisional	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>PTZ00108 DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>PLN03237 DNA topoisomerase 2; Provisional	Back alignment and domain information

>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>PTZ00109 DNA gyrase subunit b; Provisional	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PHA02569 39 DNA topoisomerase II large subunit; Provisional	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1566
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 63.7 bits (154), Expect = 4e-10
 Identities = 98/663 (14%), Positives = 204/663 (30%), Gaps = 172/663 (25%)

Query: 709  QQLEKYRQKSPSTIE-LLKETQCQELE--IDGVLPSSA---IAGQNPPREIVAVVRPASF 762
            +   +Y+       +  +    C++++     +L       I        +   +R    
Sbjct: 13   EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLRLFWT 70

Query: 763  ISSSASKNLVQKYI---VKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLY 819
            + S   + +VQK++   ++ + + LM    K E      +  +Y  +             
Sbjct: 71   LLSK-QEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDR---------- 118

Query: 820  IFEVGCKFPKLF----------QNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKL- 868
            ++     F K            + A        L E       K VL+ G    GK  + 
Sbjct: 119  LYNDNQVFAKYNVSRLQPYLKLRQA--------LLELRP---AKNVLIDGVLGSGKTWVA 167

Query: 869  ------LDTKERPELRV---------RVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIK 913
                     + + + ++            + L  L    Y I  N   + S+      I 
Sbjct: 168  LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNI- 223

Query: 914  PSKIIKVEDKLKWNLSPDKLTLNIQDIL--VASSKLDEIRP-DYRATLVISSKDKPV--- 967
              +I  ++ +L+  L   K   N   +L  V ++K       +    ++++++ K V   
Sbjct: 224  KLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDF 280

Query: 968  -SVSIPCRVTPGSLKNVAVHPQNLGIL----------LPGSVIKMLKLEKGLEVELNVDG 1016
             S +    ++           +   +L          LP  V+        +  E   DG
Sbjct: 281  LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 1017 FCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRV 1076
                D     + V+   C  L+ +++         SL+VL      +++ F      L V
Sbjct: 341  LATWDNW---KHVN---CDKLTTIIES--------SLNVLEPA--EYRKMFD----RLSV 380

Query: 1077 ISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYA 1136
                P      + +  I   ++         +   +K      L   S V          
Sbjct: 381  F---PP----SAHIPTILLSLIWFDVIKSDVMVVVNK------LHKYSLVEKQPKESTI- 426

Query: 1137 FRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPK-LESDDIRTPCSDGK 1195
                  ++P+I L                  L+ SI V     PK  +SDD+  P  D  
Sbjct: 427  ------SIPSIYLE-------LKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQY 472

Query: 1196 VFLLEGPSPIKHVGNHMVPI--------MKIV----NELESEVRNYGLCIGRHEKALKLL 1243
             +         H+G+H+  I         ++V      LE ++R+           L  L
Sbjct: 473  FY--------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 1244 NDQKM----------EVEEVLSKLQ---VSVEPYSLLTKE-EIIRRI-----KSIYQSAA 1284
               K           + E +++ +      +E   + +K  +++R       ++I++ A 
Sbjct: 525  QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

Query: 1285 SVI 1287
              +
Sbjct: 585  KQV 587

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1566
d1gxja_		161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	99.72
d1b63a2		218	DNA mismatch repair protein MutL {Escherichia coli	99.37
d2iwxa1		213	HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T	99.32
d1h7sa2		203	DNA mismatch repair protein PMS2 {Human (Homo sapi	99.31
d1uyla_		208	HSP90 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2gqpa1		227	HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	99.18
d2hkja3		219	Topoisomerase VI-B subunit {Archaeon Sulfolobus sh	98.82
d1pvga2		239	DNA topoisomerase II {Baker's yeast (Saccharomyces	97.77
d1kija2		212	DNA gyrase B {Thermus thermophilus [TaxId: 274]}	97.15
d1ei1a2		219	DNA gyrase B {Escherichia coli [TaxId: 562]}	96.98
d1gkza2		193	Branched-chain alpha-ketoacid dehydrogenase kinase	96.95
d1bxda_		161	Histidine kinase domain of the osmosensor EnvZ {Es	96.89
d1id0a_		146	Histidine kinase PhoQ domain {Escherichia coli [Ta	96.88
d1jm6a2		190	Pyruvate dehydrogenase kinase {Rat (Rattus norvegi	96.87
d2c2aa2		161	Sensor histidine kinase TM0853 {Thermotoga maritim	96.84
d1ysra1		148	Sensor-type histidine kinase PrrB {Mycobacterium t	96.52
d1th8a_		139	Anti-sigma factor spoIIab {Bacillus stearothermoph	96.09
d1s14a_		168	Topoisomerase IV subunit B {Escherichia coli [TaxI	95.35
d1y8oa2		125	Pyruvate dehydrogenase kinase {Human (Homo sapiens	94.62
d1ixma_		179	Sporulation response regulatory protein Spo0B {Bac	93.51
d1r62a_		156	Nitrogen regulation protein NtrB, C-terminal domai	92.37

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=1.1e-17  Score=161.17  Aligned_cols=155  Identities=24%  Similarity=0.303  Sum_probs=126.2

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf             55404444322566678999887887104102122326635889999983334424699715898999998631188530
Q 000400         1281 QSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDR 1360 (1566)
Q Consensus      1281 ~~aa~i~~~l~~~~~~~~~~s~~~~gV~G~VA~Lg~V~d~~la~als~~lG~~~m~~VV~~t~e~ak~le~ylke~~i~~ 1360 (1566)
                      +++.+|+.+++.+..        .+||+|.|++|++| ++.|..|+++++|. .+++||++|.+.|+.++.|+++.+   
T Consensus         1 G~~~gvr~il~~~~~--------~~gv~G~v~dli~v-~~~y~~Ave~aLG~-~l~~vVV~~~~~A~~~i~~lk~~~---   67 (161)
T d1gxja_           1 GFSRAVRAVFEEKER--------FPGLVDVVSNLIEV-DEKYSLAVSVLLGG-TAQNIVVRNVDTAKAIVEFLKQNE---   67 (161)
T ss_dssp             CCCHHHHHHHHTGGG--------CTTEEEEHHHHCBC-CGGGHHHHHHHHGG-GGGCEEESSHHHHHHHHHHHHHHT---
T ss_pred             CHHHHHHHHHHCCCC--------CCCCEEEHHHHCCC-CHHHHHHHHHHHHH-HHCEEEECCHHHHHHHHHHHHHCC---
T ss_conf             903899999966122--------79955878882760-88799999999636-540599787999999999974325---


Q ss_pred             CCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             01013656301756488058984279788899999999201135999999999889885176520222364332101235
Q 000400         1361 KCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSA 1440 (1566)
Q Consensus      1361 ~~~~~~~~~s~~~~~~GR~tfLpL~~irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~ 1440 (1566)
                                     .||++|+||+.+.+....             .+.+   ...+|++++|.|+|+||+++.      
T Consensus        68 ---------------~Gr~tfipl~~i~~~~~~-------------~~~~---~~~~~~v~~~~dlV~~~~~~~------  110 (161)
T d1gxja_          68 ---------------AGRVTILPLDLIDGSFNR-------------ISGL---ENERGFVGYAVDLVKFPSDLE------  110 (161)
T ss_dssp             ---------------CCCEEEEETTTCCCCCCC-------------CTTG---GGSTTEEEEHHHHCBCCGGGH------
T ss_pred             ---------------CCEEEEEECCCCCCCCCC-------------CCCC---CCCCCCCHHHHHHCCCCHHHH------
T ss_conf             ---------------861899965543465321-------------1100---037773332887433888899------


Q ss_pred             CCCCCHHHHHHHHCCCEEEECHHHHHHHHHH-----CCCCEEEECCCEEECCCEEEECC
Q ss_conf             8873023798660361110028869999830-----25845981087020165175077
Q 000400         1441 GNGLRETLLYRLFGKLQVYKTRKDMIEAHTC-----IRHGAVSLDGGILKEDGIISLGC 1494 (1566)
Q Consensus      1441 g~gLretif~~vfg~t~Vy~Tre~m~~A~~~-----i~~~~VTLDG~li~~~G~~tgG~ 1494 (1566)
                            .++.++||++.+++   +++.|+.+     ++-.+||+||++++++|.|+||.
T Consensus       111 ------~~~~~llg~~~iv~---~l~~A~~l~~~~~~~~~~VT~dGd~~~~~G~i~GG~  160 (161)
T d1gxja_         111 ------VLGGFLFGNSVVVE---TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGR  160 (161)
T ss_dssp             ------HHHHHHHTTCEEES---CHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEE
T ss_pred             ------HHHHHHCCCEEEEC---CHHHHHHHHHHCCCCCEEEECCCCEECCCEEEECCC
T ss_conf             ------99999859989999---999999999864999759969983898986683799

PyMOL of d1gxja_

>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	Back information, alignment and structure

>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}	Back information, alignment and structure

>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}	Back information, alignment and structure

>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure