Citrus Sinensis ID: 000424
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1525 | 2.2.26 [Sep-21-2011] | |||||||
| P39706 | 426 | COMPASS component SWD1 OS | yes | no | 0.057 | 0.206 | 0.311 | 0.0005 |
| >sp|P39706|SWD1_YEAST COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 98 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI--GIIQVGSQPITSVAWLPMLRL 155
L F P ++L +G G L+ +D+ RP + ++ +PITS+AW P RL
Sbjct: 27 LRTECLQFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITSIAWSPDGRL 86
Query: 156 LVTLCRDGSLQVWKTRVIINPNRPPMQANFFEP 188
L+T RD S+++W + P++P + F P
Sbjct: 87 LLTSSRDWSIKLWD---LSKPSKPLKEIRFDSP 116
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The COMPASS (Set1C) complex specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1525 | ||||||
| 449502736 | 1615 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.984 | 0.930 | 0.804 | 0.0 | |
| 449460596 | 1615 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.930 | 0.803 | 0.0 | |
| 255562613 | 1594 | nucleotide binding protein, putative [Ri | 0.975 | 0.933 | 0.796 | 0.0 | |
| 356511748 | 1595 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.930 | 0.765 | 0.0 | |
| 358345857 | 1604 | Vascular protein [Medicago truncatula] g | 0.981 | 0.933 | 0.758 | 0.0 | |
| 356563648 | 1595 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.930 | 0.762 | 0.0 | |
| 356496870 | 1583 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.931 | 0.750 | 0.0 | |
| 334185870 | 1614 | transducin/WD40 domain-containing protei | 0.962 | 0.909 | 0.735 | 0.0 | |
| 357518605 | 1644 | Vascular protein [Medicago truncatula] g | 0.979 | 0.908 | 0.722 | 0.0 | |
| 297816310 | 1579 | transducin family protein [Arabidopsis l | 0.951 | 0.918 | 0.724 | 0.0 |
| >gi|449502736|ref|XP_004161728.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226668 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 2496 bits (6468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1234/1534 (80%), Positives = 1350/1534 (88%), Gaps = 32/1534 (2%)
Query: 1 MESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 60
ME IS DTEVHLALTPLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACH
Sbjct: 105 MEQISSDTEVHLALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACH 164
Query: 61 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 120
PRLP+LYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDRRGT
Sbjct: 165 PRLPLLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGT 224
Query: 121 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPP 180
LLAWDVSIE+PSMIGI QVGSQPI SVAWLPMLRLLV+L +DG+LQVWKTRVI+NPNRPP
Sbjct: 225 LLAWDVSIEKPSMIGITQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPP 284
Query: 181 MQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIK 240
MQA FFEPA IESIDIPRILSQQGGEAVYPLPR++AL+VHP+LNLA LLFAN +G D +K
Sbjct: 285 MQAXFFEPAVIESIDIPRILSQQGGEAVYPLPRIKALQVHPKLNLAALLFANMSGADTVK 344
Query: 241 NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSH 300
NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSS+G+SGILADHQLQAQLQEHHLKGHS
Sbjct: 345 NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSLGASGILADHQLQAQLQEHHLKGHSS 404
Query: 301 LTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRE 360
LTISDIARKAFL+SHFMEGHAK+APISRLP+ITI DSKH LKD+PVCQPFHLELNFF++E
Sbjct: 405 LTISDIARKAFLHSHFMEGHAKNAPISRLPIITILDSKHHLKDVPVCQPFHLELNFFSKE 464
Query: 361 NRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLV 420
NRVLHYPVRAFY+DG NL+AYNLCSG+DSIY+KLY++IPG VE++PK +V+S++Q+LFLV
Sbjct: 465 NRVLHYPVRAFYIDGQNLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIVHSRKQRLFLV 524
Query: 421 VYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYIL 480
YEFSG TNEVVLY EN D+Q A+SK +TVKGRDAAFIGPNE+QFAILDDDKTGLALYIL
Sbjct: 525 TYEFSGATNEVVLYWENTDSQTANSKCTTVKGRDAAFIGPNENQFAILDDDKTGLALYIL 584
Query: 481 K-GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDG 539
G T QE ++N V++ N ST+TN S++GP+ MFE+EVDRIF TP+ESTLMFA G
Sbjct: 585 PGGKTSQE--NDNEKVLEDNHSTETNNNSIRGPMPFMFETEVDRIFPTPLESTLMFASHG 642
Query: 540 DQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQ 599
DQIG+AKLVQG+R S G+Y+ TK EG+KSIKLKV E++L+V WQET RG VAGVLTTQ
Sbjct: 643 DQIGLAKLVQGHRNSTADGNYVPTKGEGRKSIKLKVNEIVLQVHWQETLRGLVAGVLTTQ 702
Query: 600 RVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSIS 659
RVL+VSADLDILAS+ K SLLW+GPAL+FSTATAISVLGWDGKVR ILSIS
Sbjct: 703 RVLMVSADLDILASTYAK---------SLLWIGPALVFSTATAISVLGWDGKVRTILSIS 753
Query: 660 MPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDL 719
MP AVLVGALNDRLLLANPTEINPRQKK +EI+SCLVGLLEPLLIGFATMQQ FEQKLDL
Sbjct: 754 MPYAVLVGALNDRLLLANPTEINPRQKKVVEIRSCLVGLLEPLLIGFATMQQRFEQKLDL 813
Query: 720 SEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF 779
SEILYQITSRFDSLRITPRSLDILA GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF
Sbjct: 814 SEILYQITSRFDSLRITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF 873
Query: 780 STALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESIL 839
STALSVLKDEFLRSRDYP+CPPTS LFHRFRQLGYACIK+GQFDSAKETFEVIAD +SIL
Sbjct: 874 STALSVLKDEFLRSRDYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNDSIL 933
Query: 840 DLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKG 899
DLFICHLNPSA+RRLAQ+LEE+G + ELRRYCERILRVRSTGWTQGIFANFAAESMVPKG
Sbjct: 934 DLFICHLNPSALRRLAQKLEEDGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKG 993
Query: 900 PEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTI 959
PEWGGGNWEIKTPTNLK+IPQWELA EV+PYM+TDDG IPSI++DH+G+YLGS+KGRG+I
Sbjct: 994 PEWGGGNWEIKTPTNLKAIPQWELAAEVMPYMKTDDGSIPSIVADHIGVYLGSVKGRGSI 1053
Query: 960 VE-VTEKSLVKDFIPAGAD-NKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQ 1017
VE V+E SLVK F PAG + +K G+ + KS NKSK +SD DSK +LMGLETL Q
Sbjct: 1054 VEVVSEDSLVKSFAPAGGNVDKATGLQTPLAKSISNKSKASSDGDSK-DNLMGLETLMKQ 1112
Query: 1018 NTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNK 1077
SSAA DEQAKAEEEFKKTMYG A DGSSSDEE SKT+KL IRIRDKP+ S VDV K
Sbjct: 1113 --SSAAADEQAKAEEEFKKTMYGTANDGSSSDEENVSKTRKLHIRIRDKPVTSPTVDVKK 1170
Query: 1078 IKEATKQFKLGEGLGPPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSA-PGDLF 1135
IKEAT QFKLGEG GPP+ RTKSL + DL Q SQP +TAP SA P D F
Sbjct: 1171 IKEATMQFKLGEGFGPPISRTKSLTGSTPDLAQNLSQPPVTTA---LTAPIVSATPVDPF 1227
Query: 1136 GTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVS 1195
GT+S +QPA V +P++ G+ G +PIPEDFFQNTIPSLQ+AASLPPPGTYLS+ D S
Sbjct: 1228 GTDSLMQPAPVLQPSTQGTGAGVAARPIPEDFFQNTIPSLQIAASLPPPGTYLSQLDPAS 1287
Query: 1196 QGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQ-TPF 1254
+GV S KV+ NQANAP + GLPDGGVPPQ + QPA+P ESIGLPDGGVPPQS GQ T
Sbjct: 1288 RGVDSNKVSSNQANAPEVNVGLPDGGVPPQASQQPALPFESIGLPDGGVPPQSFGQPTAM 1347
Query: 1255 PYQSQ-VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPP--TSVRPGQVPRGAAAS 1311
P Q V PAQ +QP+DLS LGVPNS DSGK P PP TSVRPGQVPRGAAAS
Sbjct: 1348 PPSVQAVQPAQPSFPSQPIDLSVLGVPNSADSGKPP-----PPQATSVRPGQVPRGAAAS 1402
Query: 1312 VCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEIL 1371
+CFKTGLAHLEQN L DALSCFDEAFLALAKDHSRGAD+KAQATICAQYKIAVTLLQEI
Sbjct: 1403 ICFKTGLAHLEQNHLSDALSCFDEAFLALAKDHSRGADIKAQATICAQYKIAVTLLQEIG 1462
Query: 1372 RLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLE 1431
RLQKVQG S+A+SAKDEM RLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLE
Sbjct: 1463 RLQKVQG-SSALSAKDEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLE 1521
Query: 1432 LLLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCG 1491
LL SKAPASKQDELRSLIDMCVQRGL NKSIDP EDPS FCAATLSRLSTIGYDVCDLCG
Sbjct: 1522 LLFSKAPASKQDELRSLIDMCVQRGLLNKSIDPQEDPSMFCAATLSRLSTIGYDVCDLCG 1581
Query: 1492 AKFSALSAPGCIICGMGSIKRSDALAGPVPTPFG 1525
AKFSAL++PGCIICGMGSIKRSDALA PVP+PFG
Sbjct: 1582 AKFSALTSPGCIICGMGSIKRSDALAEPVPSPFG 1615
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460596|ref|XP_004148031.1| PREDICTED: uncharacterized protein LOC101204486 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 2494 bits (6463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1233/1534 (80%), Positives = 1350/1534 (88%), Gaps = 32/1534 (2%)
Query: 1 MESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 60
ME IS DTEVHLALTPLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACH
Sbjct: 105 MEQISSDTEVHLALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACH 164
Query: 61 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 120
PRLP+LYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDRRGT
Sbjct: 165 PRLPLLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGT 224
Query: 121 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPP 180
LLAWDVSIE+PSMIGI QVGSQPI SVAWLPMLRLLV+L +DG+LQVWKTRVI+NPNRPP
Sbjct: 225 LLAWDVSIEKPSMIGITQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPP 284
Query: 181 MQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIK 240
MQANFFEPA IESIDIPRILSQQGGEAVYPLPR++AL+VHP+LNLA LLFAN +G D +K
Sbjct: 285 MQANFFEPAVIESIDIPRILSQQGGEAVYPLPRIKALQVHPKLNLAALLFANMSGADTVK 344
Query: 241 NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSH 300
NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSS+ +SGILADH+LQAQLQEHHLKGHS
Sbjct: 345 NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSLCASGILADHELQAQLQEHHLKGHSS 404
Query: 301 LTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRE 360
LTISDIARKAFL+SHFMEGHAK+APISRLP+ITI DSKH LKD+PVCQPFHLELNFF++E
Sbjct: 405 LTISDIARKAFLHSHFMEGHAKNAPISRLPIITILDSKHHLKDVPVCQPFHLELNFFSKE 464
Query: 361 NRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLV 420
NRVLHYPVRAFY+DG NL+AYNLCSG+DSIY+KLY++IPG VE++PK +V+S++Q+LFLV
Sbjct: 465 NRVLHYPVRAFYIDGQNLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIVHSRKQRLFLV 524
Query: 421 VYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYIL 480
YEFSG TNEVVLY EN D+Q A+SK +TVKGRDAAFIGPNE+QFAILDDDKTGLALYIL
Sbjct: 525 TYEFSGATNEVVLYWENTDSQTANSKCTTVKGRDAAFIGPNENQFAILDDDKTGLALYIL 584
Query: 481 K-GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDG 539
G T QE ++N V++ N ST+TN S++GP+ MFE+EVDRIF TP+ESTLMFA G
Sbjct: 585 PGGKTSQE--NDNEKVLEDNHSTETNNNSIRGPMPFMFETEVDRIFPTPLESTLMFASHG 642
Query: 540 DQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQ 599
DQIG+AKLVQG+R S G+Y+ TK EG+KSIKLKV E++L+V WQET RG VAGVLTTQ
Sbjct: 643 DQIGLAKLVQGHRNSTADGNYVPTKGEGRKSIKLKVNEIVLQVHWQETLRGLVAGVLTTQ 702
Query: 600 RVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSIS 659
RVL+VSADLDILAS+ K SLLW+GPAL+FSTATAISVLGWDGKVR ILSIS
Sbjct: 703 RVLMVSADLDILASTYAK---------SLLWIGPALVFSTATAISVLGWDGKVRTILSIS 753
Query: 660 MPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDL 719
MP AVLVGALNDRLLLANPTEINPRQKK +EI+SCLVGLLEPLLIGFATMQQ FEQKLDL
Sbjct: 754 MPYAVLVGALNDRLLLANPTEINPRQKKVVEIRSCLVGLLEPLLIGFATMQQRFEQKLDL 813
Query: 720 SEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF 779
SEILYQITSRFDSLRITPRSLDILA GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF
Sbjct: 814 SEILYQITSRFDSLRITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF 873
Query: 780 STALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESIL 839
STALSVLKDEFLRSRDYP+CPPTS LFHRFRQLGYACIK+GQFDSAKETFEVIAD +SIL
Sbjct: 874 STALSVLKDEFLRSRDYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNDSIL 933
Query: 840 DLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKG 899
DLFICHLNPSA+RRLAQ+LEE+G + ELRRYCERILRVRSTGWTQGIFANFAAESMVPKG
Sbjct: 934 DLFICHLNPSALRRLAQKLEEDGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKG 993
Query: 900 PEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTI 959
PEWGGGNWEIKTPTNLK+IPQWELA EV+PYM+TDDG IPSI++DH+G+YLGS+KGRG+I
Sbjct: 994 PEWGGGNWEIKTPTNLKAIPQWELAAEVMPYMKTDDGSIPSIVADHIGVYLGSVKGRGSI 1053
Query: 960 VE-VTEKSLVKDFIPAGAD-NKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQ 1017
VE V+E SLVK F PAG + +K G+ + KS NKSK +SD DSK +LMGLETL Q
Sbjct: 1054 VEVVSEDSLVKSFAPAGGNVDKATGLQTPLAKSISNKSKASSDGDSK-DNLMGLETLMKQ 1112
Query: 1018 NTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNK 1077
SSAA DEQAKAEEEFKKTMYG A DGSSSDEE SKT+KL IRIRDKP+ S VDV K
Sbjct: 1113 --SSAAADEQAKAEEEFKKTMYGTANDGSSSDEENVSKTRKLHIRIRDKPVTSPTVDVKK 1170
Query: 1078 IKEATKQFKLGEGLGPPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSA-PGDLF 1135
IKEAT QFKLGEG GPP+ RTKSL + DL Q SQP A +TAP SA P D F
Sbjct: 1171 IKEATMQFKLGEGFGPPISRTKSLTGSTPDLAQNLSQPPATTA---LTAPIVSATPVDPF 1227
Query: 1136 GTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVS 1195
GT+S +QPA V + ++ G+ G +PIPEDFFQNTIPSLQ+AASLPPPGTYLS+ D S
Sbjct: 1228 GTDSLMQPAPVLQTSTQGTGAGVAARPIPEDFFQNTIPSLQIAASLPPPGTYLSQLDPAS 1287
Query: 1196 QGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQ-TPF 1254
+GV S KV+ NQANAP + GLPDGGVPPQ + QPA+P ESIGLPDGGVPPQS GQ T
Sbjct: 1288 RGVDSNKVSSNQANAPEVNVGLPDGGVPPQASQQPALPFESIGLPDGGVPPQSLGQPTAM 1347
Query: 1255 PYQSQ-VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPP--TSVRPGQVPRGAAAS 1311
P Q V PAQ +QP+DLS LGVPNS DSGK P PP TSVRPGQVPRGAAAS
Sbjct: 1348 PPSVQAVQPAQPSFPSQPIDLSVLGVPNSADSGKPP-----PPQATSVRPGQVPRGAAAS 1402
Query: 1312 VCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEIL 1371
+CFKTGLAHLEQN L DALSCFDEAFLALAKDHSRGAD+KAQATICAQYKIAVTLLQEI
Sbjct: 1403 ICFKTGLAHLEQNHLSDALSCFDEAFLALAKDHSRGADIKAQATICAQYKIAVTLLQEIG 1462
Query: 1372 RLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLE 1431
RLQKVQG S+A+SAKDEM RLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLE
Sbjct: 1463 RLQKVQG-SSALSAKDEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLE 1521
Query: 1432 LLLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCG 1491
LL SKAPASKQDELRSLIDMCVQRGL NKSIDP EDPS FCAATLSRLSTIGYDVCDLCG
Sbjct: 1522 LLFSKAPASKQDELRSLIDMCVQRGLLNKSIDPQEDPSMFCAATLSRLSTIGYDVCDLCG 1581
Query: 1492 AKFSALSAPGCIICGMGSIKRSDALAGPVPTPFG 1525
AKFSAL++PGCIICGMGSIKRSDALA PVP+PFG
Sbjct: 1582 AKFSALTSPGCIICGMGSIKRSDALAEPVPSPFG 1615
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562613|ref|XP_002522312.1| nucleotide binding protein, putative [Ricinus communis] gi|223538390|gb|EEF39996.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2452 bits (6356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1215/1526 (79%), Positives = 1327/1526 (86%), Gaps = 38/1526 (2%)
Query: 1 MESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 60
ME IS DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH
Sbjct: 106 MEQISSDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165
Query: 61 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 120
PRLPVLYVAYADGLIRAYNIHTYAV YTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR GT
Sbjct: 166 PRLPVLYVAYADGLIRAYNIHTYAVAYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRHGT 225
Query: 121 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPP 180
LLAWDVS ERP+MIGI QVGSQPITS+AWLP LRLLVT+ +DG+LQVWKTRVI+NPNRPP
Sbjct: 226 LLAWDVSTERPNMIGITQVGSQPITSIAWLPTLRLLVTVSKDGTLQVWKTRVILNPNRPP 285
Query: 181 MQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIK 240
MQANFFE A IESIDIPRILSQ GGE N TGGDN+K
Sbjct: 286 MQANFFESAGIESIDIPRILSQ-GGET------------------------NVTGGDNLK 320
Query: 241 NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGH-S 299
NRAAYTREGRKQLFAVLQSARGSSAS+LKEKLSS+GSSGILADHQLQAQLQEHHLKG+ S
Sbjct: 321 NRAAYTREGRKQLFAVLQSARGSSASILKEKLSSLGSSGILADHQLQAQLQEHHLKGNQS 380
Query: 300 HLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNR 359
LTISDIARKAFLYS HAKSAPISRLPL++I D+KH LKDIP C P HLELNFFN+
Sbjct: 381 QLTISDIARKAFLYS---VCHAKSAPISRLPLVSILDTKHHLKDIPACLPLHLELNFFNK 437
Query: 360 ENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFL 419
ENRVLHYPVRAFY+DG+NL+ YNLCSG D+IY+KLY+++PG VE++PKH+VYS++Q LFL
Sbjct: 438 ENRVLHYPVRAFYIDGVNLMGYNLCSGVDNIYKKLYTSVPGNVEFHPKHIVYSRKQHLFL 497
Query: 420 VVYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYI 479
V+YEFSG+TNEVVLY EN ++Q A+SK +TVKGRDAAFIGP+E+QFA LD+DKTGLALYI
Sbjct: 498 VIYEFSGSTNEVVLYWENTESQPANSKGNTVKGRDAAFIGPSENQFAFLDEDKTGLALYI 557
Query: 480 LKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDG 539
L G +AA E N +V+ NQS +TN S++GP+Q MFESEVDRIFSTP+ESTLMFA G
Sbjct: 558 LPG-GASKAAGEKNLLVEENQSVETNANSLRGPMQFMFESEVDRIFSTPLESTLMFAIHG 616
Query: 540 DQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQ 599
QIG+AKL+QGYRL GHY+ TK+EGKKSIKLK E++L+V WQET RGYVAG+LTTQ
Sbjct: 617 SQIGLAKLLQGYRLPTSDGHYIPTKTEGKKSIKLKKNEIVLQVHWQETARGYVAGILTTQ 676
Query: 600 RVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSIS 659
RVL+VSADLDILASSSTKFDKG PSFRSLLWVGPALLFSTATA+ VLGWDG VR I+SIS
Sbjct: 677 RVLMVSADLDILASSSTKFDKGRPSFRSLLWVGPALLFSTATAVRVLGWDGIVRTIVSIS 736
Query: 660 MPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDL 719
MP AVL+GALNDRLL ANPTEINPRQKKG+EI+SCLVGLLEPLLIGFATMQQ FEQKLDL
Sbjct: 737 MPYAVLIGALNDRLLFANPTEINPRQKKGVEIRSCLVGLLEPLLIGFATMQQTFEQKLDL 796
Query: 720 SEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF 779
SE+LYQITSRFDSLRITPRSLDILA+GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF
Sbjct: 797 SEVLYQITSRFDSLRITPRSLDILARGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF 856
Query: 780 STALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESIL 839
+TALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYES+L
Sbjct: 857 ATALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESML 916
Query: 840 DLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKG 899
DLFICHLNPSAMRRLAQ+LE+EGA+PELRRYCERILRVRS+GWTQGIFANFAAESMVPKG
Sbjct: 917 DLFICHLNPSAMRRLAQKLEDEGADPELRRYCERILRVRSSGWTQGIFANFAAESMVPKG 976
Query: 900 PEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTI 959
PEWGGGNWEIKTPTNLKSIPQWELA EV+PYM+TDDG +P+II+DH+G+YLGSIKGRG +
Sbjct: 977 PEWGGGNWEIKTPTNLKSIPQWELAAEVMPYMKTDDGTVPAIITDHIGVYLGSIKGRGNV 1036
Query: 960 VEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNT 1019
VEV E SLVK F A D+KPNG+ + KS+ N+SKG + +SK SLMGLETL QN
Sbjct: 1037 VEVREGSLVKAFKSA-VDDKPNGLPNPLAKSSSNESKGLHEGNSKGDSLMGLETLIKQNA 1095
Query: 1020 SSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIK 1079
SS+A DEQAKA+EEFKKTMYGAA SSSDEE SK +KLQIRIRDKP+ S+ VDVNKIK
Sbjct: 1096 SSSAADEQAKAQEEFKKTMYGAATS-SSSDEEEPSKARKLQIRIRDKPVTSATVDVNKIK 1154
Query: 1080 EATKQFKLGEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTES 1139
EATK FKLGEGLGPPMRTKSL GSQDL Q+ SQP A + + +SSA DLFGT+S
Sbjct: 1155 EATKTFKLGEGLGPPMRTKSLT-GSQDLSQMLSQPPAMSANAPTASTSSSAAVDLFGTDS 1213
Query: 1140 WVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVA 1199
+ Q A VS+P VG +PIPEDFFQNTIPSLQVAASLPPPGT L+K DQ S+
Sbjct: 1214 FTQLAPVSQPGPTVMGVGVAARPIPEDFFQNTIPSLQVAASLPPPGTLLAKLDQTSR--- 1270
Query: 1200 SGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ 1259
G+ PN A AA GLPDGGVPPQ Q A+ +ESIGLPDGGVPPQ+S Q
Sbjct: 1271 QGQTVPNPVGASAAAIGLPDGGVPPQTT-QQAVSLESIGLPDGGVPPQASSPGAVLPQPH 1329
Query: 1260 VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLA 1319
+P S+QPLDLS LGVPNS DSGK P ASPP+SVRPGQVPRGAAASVCFK GLA
Sbjct: 1330 AQAPPIPVSSQPLDLSILGVPNSVDSGKPPVKDASPPSSVRPGQVPRGAAASVCFKVGLA 1389
Query: 1320 HLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGP 1379
HLEQNQLPDALSCFDEAFLALAKD+SRGAD+KAQATICAQYKIAVTLLQEI RLQKVQGP
Sbjct: 1390 HLEQNQLPDALSCFDEAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEISRLQKVQGP 1449
Query: 1380 SAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPA 1439
S A+SAKDEMARLSRHLGSLPL KHRINCIRTAIKRNMEVQN+AY+KQMLELLLSKAP
Sbjct: 1450 S-ALSAKDEMARLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNFAYSKQMLELLLSKAPP 1508
Query: 1440 SKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSA 1499
SKQDELRSL+DMCVQRG SNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALS
Sbjct: 1509 SKQDELRSLVDMCVQRGSSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALST 1568
Query: 1500 PGCIICGMGSIKRSDALAGPVPTPFG 1525
PGCIICGMGSIKRSDALAGPVP+PFG
Sbjct: 1569 PGCIICGMGSIKRSDALAGPVPSPFG 1594
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511748|ref|XP_003524585.1| PREDICTED: uncharacterized protein LOC100805443 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2357 bits (6108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1171/1530 (76%), Positives = 1303/1530 (85%), Gaps = 46/1530 (3%)
Query: 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 61
E IS DTEVH+ALTPLQPVVFFGFH+RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP
Sbjct: 106 EQISSDTEVHMALTPLQPVVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 165
Query: 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121
RLPVLYVAYA+GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW+FVGDR+GTL
Sbjct: 166 RLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWIFVGDRQGTL 225
Query: 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181
L WDVS ERP M+GI QVGSQPITSVAWLPMLRLLVTL +DG+L VW+TRV +NPN PP
Sbjct: 226 LVWDVSTERPIMVGIKQVGSQPITSVAWLPMLRLLVTLSKDGNLHVWETRVTVNPNGPPT 285
Query: 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241
QANFFEPA+IESIDIPRILSQQGGEA N T DN KN
Sbjct: 286 QANFFEPAAIESIDIPRILSQQGGEA------------------------NATIADNSKN 321
Query: 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 301
+A Y+REGRKQLFAVLQSARGSSASVLKEKLS++GSSG+LADHQLQAQLQEHHLKGH HL
Sbjct: 322 KARYSREGRKQLFAVLQSARGSSASVLKEKLSALGSSGVLADHQLQAQLQEHHLKGHGHL 381
Query: 302 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNREN 361
TISDIARKAFLYS HAK +PISRLPLIT+ D+KH LKD PVC+PFHLELNFFN+ N
Sbjct: 382 TISDIARKAFLYS---VCHAKISPISRLPLITVLDNKHHLKDFPVCEPFHLELNFFNKAN 438
Query: 362 RVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVV 421
RVLHYPVRA+Y+DG+NL+A+NL SG+DSIYRKLY++IPG VEY K++++SK+Q LFLVV
Sbjct: 439 RVLHYPVRAYYMDGLNLMAHNLSSGSDSIYRKLYNSIPGNVEYRAKYLIHSKKQCLFLVV 498
Query: 422 YEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 481
YEFSG TNEVVLY EN D Q+A+SKSSTVKGRDAAFIGPNE+QFAILDDDKTGL +Y L
Sbjct: 499 YEFSGATNEVVLYWENSDAQVANSKSSTVKGRDAAFIGPNENQFAILDDDKTGLGVYTLP 558
Query: 482 GVTLQEAADENNGVVDHN--QSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDG 539
G QEA D N+ V + N + +T+VGS++GP+ MFE+EVDRIFSTP++S+LMFA G
Sbjct: 559 GGASQEAKD-NDKVFEENPTATAETSVGSIRGPMPFMFETEVDRIFSTPLDSSLMFASHG 617
Query: 540 DQIGMAKLVQGYRLSARA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLT 597
+QIG+ K +QGYRLS GHY+ T SEGKKSIKLK E++L+V WQET RG+VAG+LT
Sbjct: 618 NQIGIVKFIQGYRLSTSTANGHYISTNSEGKKSIKLKRNEIVLQVHWQETLRGHVAGILT 677
Query: 598 TQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILS 657
TQRVLIVSA LDILA +S FDKGLPSFRSLLWVGPALLFSTATAIS+LGWDGKVR+ILS
Sbjct: 678 TQRVLIVSAALDILAGTSANFDKGLPSFRSLLWVGPALLFSTATAISILGWDGKVRSILS 737
Query: 658 ISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKL 717
ISMP AVLVG+LNDRLLLANPTEINPRQKK +EIKSCLVGLLEP+LIGFATMQ FEQKL
Sbjct: 738 ISMPYAVLVGSLNDRLLLANPTEINPRQKKRVEIKSCLVGLLEPILIGFATMQLSFEQKL 797
Query: 718 DLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKAL 777
DLSEILYQITSRFDS+RITPRSLDILA+G PVCGDLAV+LSQ+GPQFTQV+RG+YA+KAL
Sbjct: 798 DLSEILYQITSRFDSMRITPRSLDILARGSPVCGDLAVALSQSGPQFTQVMRGVYAVKAL 857
Query: 778 RFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYES 837
FSTAL++LKDEFLRSRDYPKCPPTS LFHRFRQLGYACI++GQFDSAKETFEVIAD ES
Sbjct: 858 HFSTALNILKDEFLRSRDYPKCPPTSHLFHRFRQLGYACIRFGQFDSAKETFEVIADNES 917
Query: 838 ILDLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVP 897
+LDLFICHLNPSAMRRLAQ+LEEEG + ELRRYC+RILR RSTGWTQGIFANFAAESMVP
Sbjct: 918 MLDLFICHLNPSAMRRLAQKLEEEGLDSELRRYCDRILRARSTGWTQGIFANFAAESMVP 977
Query: 898 KGPEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRG 957
KGPEWGGGNWEIKTPT +K IPQWELA EV PYM+TDDG IPSII DH+G+YLGSIKGRG
Sbjct: 978 KGPEWGGGNWEIKTPTAVKDIPQWELAAEVTPYMKTDDGTIPSIIVDHIGVYLGSIKGRG 1037
Query: 958 TIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQ 1017
IVEV E SLVK F+P G +NK NG+ +SSVKS N+S ++K SLMGLE+L Q
Sbjct: 1038 NIVEVREDSLVKAFMPTGNENKVNGLEASSVKSISNQSNVVG--NTKGDSLMGLESLN-Q 1094
Query: 1018 NTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNK 1077
+ +S++ DEQAKAEEEFKK+MYGAAADGSSSDEEG SK KKL+I+IRDKPIASS VDVNK
Sbjct: 1095 HLASSSADEQAKAEEEFKKSMYGAAADGSSSDEEGVSKIKKLRIKIRDKPIASSTVDVNK 1154
Query: 1078 IKEATKQFKLGEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGT 1137
IKEAT+QFKLGEGL PPMR++S GSQDLGQ+ S P G + T S PGDLFGT
Sbjct: 1155 IKEATRQFKLGEGLAPPMRSRSSSGGSQDLGQILSLPPPTTGSASSTV---STPGDLFGT 1211
Query: 1138 ESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQG 1197
++ Q +S+P + G + PIPEDFFQNTIPSLQVA SLPP GT+LSKY + G
Sbjct: 1212 DALTQSEPISQPTTGAVGGGLKAGPIPEDFFQNTIPSLQVAQSLPPAGTFLSKY---TPG 1268
Query: 1198 VASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQ 1257
V K PNQ +A A+ GL GGV PQ QPA+P+ESIGLPDGGVPPQSS Q Q
Sbjct: 1269 VEISKTTPNQVSASEANVGL-QGGVSPQTIQQPAVPIESIGLPDGGVPPQSSAQAVVMPQ 1327
Query: 1258 SQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTG 1317
SQ+ +Q S+QPLDLS LGVPNS DSGK P S +V PGQVPRGAAASVCFKTG
Sbjct: 1328 SQLQASQAQISSQPLDLSILGVPNSADSGKPPQT-GSQQIAVHPGQVPRGAAASVCFKTG 1386
Query: 1318 LAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQ 1377
LAHLEQN L DALSCFDEAFLALAK+ SRG D+KAQATICAQYKIAVTLL+EI RLQKV
Sbjct: 1387 LAHLEQNNLSDALSCFDEAFLALAKEQSRGIDIKAQATICAQYKIAVTLLREIGRLQKVH 1446
Query: 1378 GPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKA 1437
GPS AISAKDEMARLSRHLGSLPL KHRINCIRTAIKRNM+VQNYAY+KQMLELLLSKA
Sbjct: 1447 GPS-AISAKDEMARLSRHLGSLPLLAKHRINCIRTAIKRNMDVQNYAYSKQMLELLLSKA 1505
Query: 1438 PASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSAL 1497
P SKQDE RSLID+CVQRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA+
Sbjct: 1506 PPSKQDEFRSLIDLCVQRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAV 1565
Query: 1498 SAPGCIICGMGSIKRSDAL--AGPVPTPFG 1525
+ PGCI+CGMGSIKRSDAL AGPVP+PFG
Sbjct: 1566 TVPGCIVCGMGSIKRSDALAGAGPVPSPFG 1595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345857|ref|XP_003636991.1| Vascular protein [Medicago truncatula] gi|355502926|gb|AES84129.1| Vascular protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2353 bits (6098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1158/1526 (75%), Positives = 1303/1526 (85%), Gaps = 29/1526 (1%)
Query: 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 61
E IS DTEVH+ALTPLQPVVFFGFH+RMSVTVVGTVEGGR PTKIK DLKK IVNLACHP
Sbjct: 106 EQISSDTEVHMALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKPDLKKAIVNLACHP 165
Query: 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121
RLPVLYVAYA+GLIRAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR+GTL
Sbjct: 166 RLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRQGTL 225
Query: 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181
LAWDVS ERPSMIGI QVGSQPI SVA+LP LRLLVTL +DG+LQVW+TRV +NPNRP
Sbjct: 226 LAWDVSTERPSMIGIKQVGSQPIKSVAFLPTLRLLVTLSKDGNLQVWETRVTVNPNRPST 285
Query: 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241
QA+FFEPA+IESIDIPRILSQQGGEAVYPLPR++A+E HP+ NLA L N T + KN
Sbjct: 286 QASFFEPAAIESIDIPRILSQQGGEAVYPLPRIKAIEFHPKSNLAAL---NVTSAETSKN 342
Query: 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 301
+A+Y+REGRKQLFAVLQSARGSSASV+KEKLS++GSSG+LADHQLQAQLQEHHLKGHS++
Sbjct: 343 KASYSREGRKQLFAVLQSARGSSASVIKEKLSALGSSGVLADHQLQAQLQEHHLKGHSNI 402
Query: 302 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNREN 361
TISDIARKAFLYSHFMEGH K +PISRLPLIT+ D+KH LKD PVC+P+HLELNFFN+ N
Sbjct: 403 TISDIARKAFLYSHFMEGHMKISPISRLPLITVLDTKHHLKDFPVCEPYHLELNFFNKAN 462
Query: 362 RVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVV 421
RVLHYP RAFY+DG+NL+A++L SG+D IYRKLY++IPG VEY K++++SK+Q+LFLVV
Sbjct: 463 RVLHYPSRAFYMDGLNLMAHSLSSGSDIIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVV 522
Query: 422 YEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 481
YEFSG+TNEVVLY EN D Q +SKSSTVKGRDAAFIG NE+QFAILD+D+TGLALY L
Sbjct: 523 YEFSGSTNEVVLYWENTDVQTGNSKSSTVKGRDAAFIGSNENQFAILDEDRTGLALYTLP 582
Query: 482 GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQ 541
G T QE D N+ V + NQ T+TNVGS++GP MFE+EVDRIFSTP++STLMFA G+Q
Sbjct: 583 GGTSQEVKD-NDKVFEENQPTETNVGSIRGPTPFMFETEVDRIFSTPLDSTLMFASHGNQ 641
Query: 542 IGMAKLVQGYRLSARA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQ 599
IG+ KL++GYRLS GHY+ TKS+GKKSIKLK E++L+V WQET RG VAG+LTT
Sbjct: 642 IGLVKLIEGYRLSTSTANGHYISTKSDGKKSIKLKRNEIVLQVHWQETLRGNVAGILTTH 701
Query: 600 RVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSIS 659
RVLIVSA LD+LA +STK SLLWVGPALLFST A+S+LGWDGKVR +LSIS
Sbjct: 702 RVLIVSAALDVLAGTSTK---------SLLWVGPALLFSTTAAVSILGWDGKVRPVLSIS 752
Query: 660 MPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDL 719
MP AVLVGALNDRLLLA+PTEINPRQKKG+EIKSCLVGLLEP+LIGFATMQ FEQKLDL
Sbjct: 753 MPYAVLVGALNDRLLLASPTEINPRQKKGVEIKSCLVGLLEPILIGFATMQLSFEQKLDL 812
Query: 720 SEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF 779
SEILYQITSRFDSLRITPRSLDILAKG PVCGDLAVSLSQ+GPQFTQV+RG+YA+KALRF
Sbjct: 813 SEILYQITSRFDSLRITPRSLDILAKGSPVCGDLAVSLSQSGPQFTQVMRGVYAVKALRF 872
Query: 780 STALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESIL 839
STALSVLKDEFLRSRDYP+CPPTS LFHRFRQL YACI++GQFDSAKETFE IADYE +L
Sbjct: 873 STALSVLKDEFLRSRDYPRCPPTSHLFHRFRQLAYACIRFGQFDSAKETFETIADYEGML 932
Query: 840 DLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKG 899
DLFICHLNPSAMRRLAQ+LE+EG + ELRRYCERILR+RSTGWTQGIFANFAAESMVPKG
Sbjct: 933 DLFICHLNPSAMRRLAQKLEDEGLDSELRRYCERILRIRSTGWTQGIFANFAAESMVPKG 992
Query: 900 PEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTI 959
PEWGGGNWEIKTPT +K IPQWELA EV PYM+TDDG +PSII DH+G+YLGSIKGRG I
Sbjct: 993 PEWGGGNWEIKTPTTVKDIPQWELAAEVTPYMKTDDGTVPSIIVDHIGVYLGSIKGRGNI 1052
Query: 960 VEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNT 1019
VEV E SLVK F+PAG DNK NG+ SSVKS N+ + K S MGLE+L Q
Sbjct: 1053 VEVREDSLVKAFMPAGNDNKVNGLELSSVKSISNQPNVVG--NPKGDSSMGLESLNKQLA 1110
Query: 1020 SSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIK 1079
+S+A DEQAKAEEEFKK+MYG AADGSSSDEEG SK K++ I+IRDKPI+SS VDVNKIK
Sbjct: 1111 NSSA-DEQAKAEEEFKKSMYG-AADGSSSDEEGASKIKRIHIKIRDKPISSSTVDVNKIK 1168
Query: 1080 EATKQFKLGEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTES 1139
EATKQFKLGEGL PPMRT+S GSQDLGQ+ S P A G I S P DLFGT++
Sbjct: 1169 EATKQFKLGEGLPPPMRTRS-NSGSQDLGQILSLPPATTG---IPTATVSTPVDLFGTDA 1224
Query: 1140 WVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVA 1199
QP +S+P + G PIPEDFFQNTI S+ VAASLPP GT+LSK+ + G+
Sbjct: 1225 STQPEMISQPTTGAVGGGVAIGPIPEDFFQNTISSVHVAASLPPAGTFLSKF---TPGIQ 1281
Query: 1200 SGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ 1259
+ PNQA+A A GL GGV Q QP +P+ESIGLPDGGVPPQS Q Q Q
Sbjct: 1282 TSNTTPNQASATEAGFGL-QGGVSNQAIQQPVVPMESIGLPDGGVPPQSMPQAVVTPQPQ 1340
Query: 1260 VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLA 1319
+ PAQ S+QPLDLS LGVPNS DSGK P + S P SV PGQVPRGA ASVCFKTGLA
Sbjct: 1341 LQPAQPQISSQPLDLSVLGVPNSADSGKLPQS-GSAPVSVHPGQVPRGAPASVCFKTGLA 1399
Query: 1320 HLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGP 1379
HLE N L DALSCFDE+FLALAK+ SRG+D+KAQATICAQYKIAVTLL+EI RLQ+V GP
Sbjct: 1400 HLELNHLSDALSCFDESFLALAKEQSRGSDIKAQATICAQYKIAVTLLREIGRLQRVHGP 1459
Query: 1380 SAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPA 1439
S AISAKDEMARLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELLLSKAP+
Sbjct: 1460 S-AISAKDEMARLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPS 1518
Query: 1440 SKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSA 1499
+KQ+E RSL+D+CVQRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++A
Sbjct: 1519 NKQEEFRSLVDLCVQRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTA 1578
Query: 1500 PGCIICGMGSIKRSDALAGPVPTPFG 1525
PGCI+CGMGSIKRSDA+A VP+PFG
Sbjct: 1579 PGCIVCGMGSIKRSDAIAASVPSPFG 1604
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563648|ref|XP_003550073.1| PREDICTED: uncharacterized protein LOC100804284 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2333 bits (6046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1166/1530 (76%), Positives = 1295/1530 (84%), Gaps = 46/1530 (3%)
Query: 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 61
E I DTEVH+ALTPLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACHP
Sbjct: 106 EQIFSDTEVHMALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACHP 165
Query: 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121
RLPVLYVAYA+GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW+FVGDRRGTL
Sbjct: 166 RLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWIFVGDRRGTL 225
Query: 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181
L WDVS ERPSMIGI QVGSQPITSVAWLPMLRLL+TL +DG+L VW+TRV +NPN PP
Sbjct: 226 LVWDVSTERPSMIGIKQVGSQPITSVAWLPMLRLLITLSKDGNLHVWETRVTVNPNGPPT 285
Query: 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241
QANFFEPA+IESIDIPRILSQQGGEA N T DN KN
Sbjct: 286 QANFFEPAAIESIDIPRILSQQGGEA------------------------NATIADNSKN 321
Query: 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 301
+A Y+ +GRKQLFAVLQSARGSSASVLKEKLS++GSSG+LADHQLQAQLQEHHLKGH HL
Sbjct: 322 KARYSTDGRKQLFAVLQSARGSSASVLKEKLSALGSSGVLADHQLQAQLQEHHLKGHGHL 381
Query: 302 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNREN 361
TISDIARKAFLYS HAK +PISRLPLIT+ D+KH LKD PVCQPFHLELNFFN+ N
Sbjct: 382 TISDIARKAFLYS---VCHAKISPISRLPLITVLDNKHHLKDFPVCQPFHLELNFFNKAN 438
Query: 362 RVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVV 421
RVLHYPVRA+Y+DG+NL+A+NL SG+DSIYRKLY++IPG VEY K++++SK+Q+LFLVV
Sbjct: 439 RVLHYPVRAYYMDGLNLMAHNLSSGSDSIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVV 498
Query: 422 YEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 481
YEFSG TNEVVLY EN D Q+A+SKSSTVKGRDAAFIGPNE+QFAILDDDKTGL +Y L
Sbjct: 499 YEFSGATNEVVLYWENSDAQVANSKSSTVKGRDAAFIGPNENQFAILDDDKTGLGVYTLP 558
Query: 482 GVTLQEAADENNGVVDHN--QSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDG 539
G QEA D N+ V + N + +T+ GS++GP MFE+EVDRIFSTP++S+LMFA G
Sbjct: 559 GGASQEAKD-NDKVFEENPTATAETSAGSIRGPTPFMFETEVDRIFSTPLDSSLMFASHG 617
Query: 540 DQIGMAKLVQGYRLSARA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLT 597
+QIG+AKL+QGYRLS GHY+ T SEGKKSIKLK E++L+V WQET RG+VAG+LT
Sbjct: 618 NQIGIAKLIQGYRLSTSTANGHYISTNSEGKKSIKLKRNEIVLQVHWQETLRGHVAGILT 677
Query: 598 TQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILS 657
TQRVLIVSA LDILA + FDKGLPSFRSLLWVGPALLFSTA AIS+LGWDGKVR+ILS
Sbjct: 678 TQRVLIVSAALDILAGTYANFDKGLPSFRSLLWVGPALLFSTAAAISILGWDGKVRSILS 737
Query: 658 ISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKL 717
ISMP AVLVG+LNDRLLLANPTEINPRQKK +EIKSCLVGLLEP+LIGFATMQ FEQKL
Sbjct: 738 ISMPYAVLVGSLNDRLLLANPTEINPRQKKRVEIKSCLVGLLEPILIGFATMQLSFEQKL 797
Query: 718 DLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKAL 777
DLSEILYQITSRFDSLRITPRSLDILA+G PVCGDLAV+LSQ+GPQFTQV+RG+YA+KAL
Sbjct: 798 DLSEILYQITSRFDSLRITPRSLDILARGSPVCGDLAVALSQSGPQFTQVMRGVYAVKAL 857
Query: 778 RFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYES 837
RFSTAL++LKDEFLRSRDYPKCPPTS LFHRFRQLGYACI++GQFDSAKETFEVIADYES
Sbjct: 858 RFSTALNILKDEFLRSRDYPKCPPTSHLFHRFRQLGYACIRFGQFDSAKETFEVIADYES 917
Query: 838 ILDLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVP 897
+LDLFICHLNPSAMRRLAQ+LEEEG + ELRRYC+RILR RSTGWTQGIFANF+AESMVP
Sbjct: 918 MLDLFICHLNPSAMRRLAQKLEEEGLDSELRRYCDRILRARSTGWTQGIFANFSAESMVP 977
Query: 898 KGPEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRG 957
KGPEWGGGNWEIKTPT +K IPQWELA EV PYM+TDDG IPSII DH+G+YLGSIKGRG
Sbjct: 978 KGPEWGGGNWEIKTPTAVKDIPQWELAAEVTPYMKTDDGTIPSIIVDHIGVYLGSIKGRG 1037
Query: 958 TIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQ 1017
IVEV E SLVK F+P G +NK NG+ +SSVKS +S S ++K SLMGLE+ Q
Sbjct: 1038 NIVEVREDSLVKVFMPTGNENKVNGLEASSVKSISKQSNVVS--NTKGDSLMGLESHNQQ 1095
Query: 1018 NTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNK 1077
SS+A DEQAKAEEEFKK++YGAAADGSSSDEEG SK KKL+I+IRDKPIASS VDVNK
Sbjct: 1096 LASSSA-DEQAKAEEEFKKSLYGAAADGSSSDEEGVSKMKKLRIKIRDKPIASSTVDVNK 1154
Query: 1078 IKEATKQFKLGEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGT 1137
IKEAT+QFKLGEGL PPMR++S GSQDLGQ+ S P G + + S PGDLFGT
Sbjct: 1155 IKEATRQFKLGEGLAPPMRSRSSSGGSQDLGQILSLPPPTTG---LASSTVSTPGDLFGT 1211
Query: 1138 ESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQG 1197
++ Q +S+P + G + PIPEDFFQNTIPSLQVA +LPP GT+LS Y + G
Sbjct: 1212 DALTQSEPISQPTTGALGGGLKPGPIPEDFFQNTIPSLQVAQTLPPAGTFLSNY---TPG 1268
Query: 1198 VASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQ 1257
V K PNQ +A + GL GGVPPQ QP +P+ESIGLPDGGVPPQSS Q Q
Sbjct: 1269 VEINKTTPNQVSAFQVNVGL-QGGVPPQTIQQPVVPIESIGLPDGGVPPQSSAQAVVMPQ 1327
Query: 1258 SQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTG 1317
SQ+ AQ S+QPLDLS LGV NS DSGK P A +V PGQVPRGA ASVCFKTG
Sbjct: 1328 SQLQAAQAQISSQPLDLSILGVTNSADSGKPPQTGAQ-QIAVHPGQVPRGAPASVCFKTG 1386
Query: 1318 LAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQ 1377
LAHLEQN L DALSCFDEAFLALAK+ SR D+KAQATICAQYKIAVTLLQEI RLQKV
Sbjct: 1387 LAHLEQNNLSDALSCFDEAFLALAKEQSREIDIKAQATICAQYKIAVTLLQEIGRLQKVH 1446
Query: 1378 GPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKA 1437
GPS AISAKDEM RLSRHLGSLPL KHRINCIRTAIKRNM+VQNYAY+KQMLELLLSKA
Sbjct: 1447 GPS-AISAKDEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMDVQNYAYSKQMLELLLSKA 1505
Query: 1438 PASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSAL 1497
P SKQDE RSLID+CVQRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA+
Sbjct: 1506 PPSKQDEFRSLIDLCVQRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAV 1565
Query: 1498 SAPGCIICGMGSIKRSDAL--AGPVPTPFG 1525
+APGCI+CGMGSIKRSDAL AGPVP+PFG
Sbjct: 1566 TAPGCIVCGMGSIKRSDALAGAGPVPSPFG 1595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496870|ref|XP_003517288.1| PREDICTED: uncharacterized protein LOC100787845 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2299 bits (5958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1147/1528 (75%), Positives = 1281/1528 (83%), Gaps = 54/1528 (3%)
Query: 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 61
E IS DTEVHLALTPLQ +VFFGFH+R+SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP
Sbjct: 106 EQISSDTEVHLALTPLQSIVFFGFHKRLSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 165
Query: 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121
RLPVLYVAYA+GLIRAYNIHTYAVHYTLQLDNTIKL GAGAFAFHPTLEW+FVGDRRGTL
Sbjct: 166 RLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLNGAGAFAFHPTLEWIFVGDRRGTL 225
Query: 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181
LAWDVS ERPS+IG+ QVGSQPITSV+WL L LLVTL RDGSLQVWKTRVI+NPN PPM
Sbjct: 226 LAWDVSTERPSIIGLTQVGSQPITSVSWLTTLCLLVTLSRDGSLQVWKTRVIVNPNTPPM 285
Query: 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241
A+FF PA+IES+DIPRILSQQGGEA N T GD +KN
Sbjct: 286 PASFFVPAAIESLDIPRILSQQGGEA------------------------NVTSGDPLKN 321
Query: 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 301
+ Y+RE RKQLF+VLQSARGSSAS LKEKLS++GSSG+LADHQLQAQLQEHHLKGH+HL
Sbjct: 322 KTTYSRERRKQLFSVLQSARGSSASTLKEKLSALGSSGVLADHQLQAQLQEHHLKGHNHL 381
Query: 302 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNREN 361
TI DI RKAFLYS + KSAPISRLPLITI D+KH LKD PV QPFHLELNFFN+EN
Sbjct: 382 TILDIGRKAFLYS---VCNTKSAPISRLPLITILDTKHYLKDFPVIQPFHLELNFFNKEN 438
Query: 362 RVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVV 421
RVLHYPVRAFYVDG NL+A+NL SG+DSIY+KLY++IP +VEY K+++YSK+Q LFLV
Sbjct: 439 RVLHYPVRAFYVDGPNLMAHNLSSGSDSIYKKLYNSIPRSVEYQAKYLIYSKKQHLFLVA 498
Query: 422 YEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 481
YEFSGTTNEVVLYREN D ++++SKSSTVKGRDAAFIGPNE+QFAILDDDKTGLA+Y L
Sbjct: 499 YEFSGTTNEVVLYRENTDAEISNSKSSTVKGRDAAFIGPNENQFAILDDDKTGLAVYTLP 558
Query: 482 GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQ 541
G QE EN+ + + NQ T+T VGS+QGP MFE+EVDRI+STP++STLMFA G+Q
Sbjct: 559 GGASQET-KENDKLFEENQPTETTVGSIQGPTPFMFETEVDRIYSTPLDSTLMFASHGNQ 617
Query: 542 IGMAKLVQGYRLSARA----GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLT 597
IG+ KL+QGYRLS + GHY+ TKSEGKKSI LK E++L+V WQET RG+VAG+LT
Sbjct: 618 IGLVKLIQGYRLSTSSSKSNGHYISTKSEGKKSINLKRNEIVLQVYWQETLRGHVAGILT 677
Query: 598 TQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILS 657
TQRVLIVSA DILA +ST FDKGLPSFRSLLWVGPALLFSTATAIS+LGWDGKVR ILS
Sbjct: 678 TQRVLIVSAAFDILAGTSTNFDKGLPSFRSLLWVGPALLFSTATAISILGWDGKVRTILS 737
Query: 658 ISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKL 717
S+P AVLVGALNDRLLLA+PTEINP+QKKG+EIKSCLVGLLEPLLIGFATMQQ FEQKL
Sbjct: 738 TSVPYAVLVGALNDRLLLASPTEINPKQKKGVEIKSCLVGLLEPLLIGFATMQQSFEQKL 797
Query: 718 DLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKAL 777
DLSEILYQITSRFDSLRITPRSLDILA+G PVCGDLAVSLSQ GP FTQV+RG+YA+KAL
Sbjct: 798 DLSEILYQITSRFDSLRITPRSLDILARGSPVCGDLAVSLSQLGPHFTQVMRGVYAVKAL 857
Query: 778 RFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYES 837
RFS+ALSVLKDEFLRSRDYP+CPPT LFHRFRQLGYACI++GQFD AKETFEV ADY+S
Sbjct: 858 RFSSALSVLKDEFLRSRDYPRCPPTCHLFHRFRQLGYACIRFGQFDRAKETFEVTADYKS 917
Query: 838 ILDLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVP 897
+LDLFICHLNPSAMRRLAQ+LE+E + ELRR+CE ILRVRS+GWTQGIFANFAAESMVP
Sbjct: 918 MLDLFICHLNPSAMRRLAQKLEDEDLDSELRRHCEWILRVRSSGWTQGIFANFAAESMVP 977
Query: 898 KGPEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRG 957
KGPEWGGG+WEIKTPTN K IPQWELA EV+PYM+TDDG IPSII DH+G+Y+GSIKGRG
Sbjct: 978 KGPEWGGGDWEIKTPTNAKDIPQWELAAEVLPYMKTDDGAIPSIILDHIGVYVGSIKGRG 1037
Query: 958 TIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQ 1017
+VEV E SLVK IPAG D K NG+ SSVK N+ VD+ G + L +
Sbjct: 1038 NVVEVREDSLVKAVIPAGNDFKANGLEISSVKPISNQR-----VDNSQGGPLSLN----K 1088
Query: 1018 NTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNK 1077
+S++ DEQAKA EEFKK+MYGAAA SSSDEEG SKTKK+++RIRDKPIASS VDVNK
Sbjct: 1089 QLASSSTDEQAKAAEEFKKSMYGAAAADSSSDEEGVSKTKKIRVRIRDKPIASSTVDVNK 1148
Query: 1078 IKEATKQFKLGEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGT 1137
IKEAT +FKL GL P R++S GSQDL Q+ S P AA G ++A S PGDLFGT
Sbjct: 1149 IKEATSKFKLSGGL-TPTRSRSFTSGSQDLDQILSLPPAATG---VSARTVSTPGDLFGT 1204
Query: 1138 ESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQG 1197
+ + QP +S+P + +S G + PIPEDFFQNTI SLQ AASL P GTYLSK+ + G
Sbjct: 1205 DVFTQPEPISQPTTGVASRGNKVGPIPEDFFQNTISSLQAAASLAPAGTYLSKF---AAG 1261
Query: 1198 VASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQ 1257
SGK NQ +A AD L G VPPQ+ QPA+P+ES GLPDGGVPPQSS Q
Sbjct: 1262 AESGKETRNQVSASKADVSL-QGDVPPQVVQQPAVPIESGGLPDGGVPPQSSAQASAMPP 1320
Query: 1258 SQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTG 1317
SQ+ Q P S+QPLDLS GVPN+ DSGK P SPP+SVRPGQVPR AAASVCFKTG
Sbjct: 1321 SQL---QEPTSSQPLDLSIFGVPNASDSGKPPQT-GSPPSSVRPGQVPREAAASVCFKTG 1376
Query: 1318 LAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQ 1377
LAHLE N L DALSCFDE+FLALAK+ SRG+D+KAQATICAQYKI VTLLQEI RLQKV
Sbjct: 1377 LAHLELNHLSDALSCFDESFLALAKEQSRGSDIKAQATICAQYKITVTLLQEIGRLQKVH 1436
Query: 1378 GPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKA 1437
GPS AISAKDEMARLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELLLSKA
Sbjct: 1437 GPS-AISAKDEMARLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKA 1495
Query: 1438 PASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSAL 1497
P SKQ+E RSLID+CVQRGL+NKSIDPLEDPSQFCA TLSRLSTIGYDVCDLCG+KFSA+
Sbjct: 1496 PPSKQEEFRSLIDLCVQRGLTNKSIDPLEDPSQFCAFTLSRLSTIGYDVCDLCGSKFSAV 1555
Query: 1498 SAPGCIICGMGSIKRSDALAGPVPTPFG 1525
+APGCIICGMGSIKRSDALAGPVP+PFG
Sbjct: 1556 TAPGCIICGMGSIKRSDALAGPVPSPFG 1583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185870|ref|NP_190628.6| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332645163|gb|AEE78684.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2293 bits (5941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1150/1564 (73%), Positives = 1290/1564 (82%), Gaps = 96/1564 (6%)
Query: 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 61
E IS DTEVHLA+TPLQPVVFFGF +RMSVTVVGTVEGGRAPTKIKTDLKKPIVN+ACHP
Sbjct: 107 EHISSDTEVHLAVTPLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNIACHP 166
Query: 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121
RLPVLYVAYA+GLIRAYNIHTYAVHYTLQLDNTIKL+GA +FAFHPTLEW+FVGDRRGTL
Sbjct: 167 RLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTL 226
Query: 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181
LAWDVS ERP+MIGI QVGSQPITS++WLPMLR+LVT+ +DGSLQVWKTRVIINPNRP
Sbjct: 227 LAWDVSTERPNMIGITQVGSQPITSISWLPMLRVLVTVSKDGSLQVWKTRVIINPNRPST 286
Query: 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241
Q NFFEPA++ESIDIP+ILSQQGGEAVYPLPR++ LEVHP+LNLA L+FAN G +N +N
Sbjct: 287 QTNFFEPAAMESIDIPKILSQQGGEAVYPLPRIKTLEVHPKLNLAALIFANMVGNENTQN 346
Query: 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 301
RAA TREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILA+HQLQA LQEH KG S L
Sbjct: 347 RAAQTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILAEHQLQALLQEH--KGQSQL 404
Query: 302 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNREN 361
TISDIARKAFLYSHFMEGHAK+APISRLPLIT+ D+K QLKDIPVCQPFHLELNFFN+ N
Sbjct: 405 TISDIARKAFLYSHFMEGHAKTAPISRLPLITVVDTKDQLKDIPVCQPFHLELNFFNKPN 464
Query: 362 RVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVV 421
RVLHYPVR+FY++G+NL+A+NLCSG D+IY+KLY++IPG VEY+ KH+VYS+++ LFLVV
Sbjct: 465 RVLHYPVRSFYIEGLNLMAHNLCSGTDNIYKKLYTSIPGNVEYHSKHIVYSRKRHLFLVV 524
Query: 422 YEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 481
+EFSG TNEVVLY EN +QL +SK ST KG DAAFIGPN+DQFAILD+DKTGL++YIL
Sbjct: 525 FEFSGATNEVVLYWENTGSQLPNSKGSTAKGCDAAFIGPNDDQFAILDEDKTGLSMYILP 584
Query: 482 GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQ 541
+T E +E N + + NQ + + +QGP Q MFE+EVDR+FSTPIESTLMFAC+G Q
Sbjct: 585 KLTTMEE-NEKNLLSEENQKKEADPSGIQGPQQFMFETEVDRVFSTPIESTLMFACNGTQ 643
Query: 542 IGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLK-------------------- 581
IG+AKL QGYRLSA GHY+ T+ EG+KSIKLK E+ L+
Sbjct: 644 IGLAKLFQGYRLSASDGHYISTQGEGRKSIKLKKHEIALQSFYSLPFNVVYIWPVLFEIK 703
Query: 582 ----------VAWQETQRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLWV 631
V WQET RGYVAG+LTTQRVL+VS LLWV
Sbjct: 704 TIMFRKLTRHVQWQETPRGYVAGILTTQRVLMVS----------------------LLWV 741
Query: 632 GPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIEI 691
GPALLFST TA+ +LGWDGKVR ILSIS P A LVGALNDRLLLA+PT+I+P+QKKGIEI
Sbjct: 742 GPALLFSTTTAVCLLGWDGKVRTILSISTPYAALVGALNDRLLLAHPTDISPKQKKGIEI 801
Query: 692 KSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCG 751
KSCLVGLLEPLLIGF+TMQQ FEQK+DLSEILYQIT+RFDSLRITPRSLDILA+ PVCG
Sbjct: 802 KSCLVGLLEPLLIGFSTMQQTFEQKVDLSEILYQITTRFDSLRITPRSLDILARSAPVCG 861
Query: 752 DLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQ 811
DLAVSL+QAGPQF QVLR YAIKALRFSTALSVLKDEFLRSRDYPKCPPTS LF RFRQ
Sbjct: 862 DLAVSLAQAGPQFNQVLRCAYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSLLFQRFRQ 921
Query: 812 LGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRYC 871
LGYACIKYGQFDSAKETFEVI DYES+LDLFICHLNPSAMRRLAQ+LEEE +PELRRYC
Sbjct: 922 LGYACIKYGQFDSAKETFEVIGDYESMLDLFICHLNPSAMRRLAQKLEEESGDPELRRYC 981
Query: 872 ERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTNLKSIPQWELATEVVPYM 931
ERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT++KSIP+WELA EV+PYM
Sbjct: 982 ERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTDMKSIPKWELAGEVMPYM 1041
Query: 932 RTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKST 991
+ +DG IPSI++DH+G+YLG +KGR +VE+ E SLV +KP G+ S+
Sbjct: 1042 KNEDGTIPSIVADHIGVYLGCVKGRVNVVEIKEDSLV---------SKPGGL---SLLGK 1089
Query: 992 YNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEE 1051
K + + S+MGLE+L QN + DEQAKA EEFKKTMYGA DGSSSDEE
Sbjct: 1090 PVSDKPLALPAGESSSMMGLESLGKQNVA----DEQAKAAEEFKKTMYGATGDGSSSDEE 1145
Query: 1052 GTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGPPM-RTKSLIPGSQDLGQL 1110
G +K KKLQIRIR+KP S+ VDVNK+KEA K FKLG+GLG M RTKS+ GSQDLGQ+
Sbjct: 1146 GVTKPKKLQIRIREKP-TSTTVDVNKLKEAAKTFKLGDGLGLTMSRTKSINAGSQDLGQM 1204
Query: 1111 SSQPSAAGGDGNITAPAS-SAPGDLFGTESWV-QPASVSKPASAGSSVGAQGQPIPEDFF 1168
SQPS++ TAP+S SAP D F SW QP VS+PA G + PIPEDFF
Sbjct: 1205 LSQPSSS-TVATTTAPSSASAPVDPFAMSSWTQQPQPVSQPAPPGVAA-----PIPEDFF 1258
Query: 1169 QNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQA-NAPAADSGLPDGGV----P 1223
QNTIPS++VA +LPPPGTYLSK DQ ++ + + PNQA N P D GLPDGGV P
Sbjct: 1259 QNTIPSVEVAKTLPPPGTYLSKMDQAARAAIAAQGGPNQANNTPLPDIGLPDGGVPQQYP 1318
Query: 1224 PQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSG 1283
Q + QP P +++GLPDGGV Q +P Q+QV P+QVP STQPLDLS LGVPN+G
Sbjct: 1319 QQTSQQPGAPFQTVGLPDGGVRQQ------YPGQNQV-PSQVPVSTQPLDLSVLGVPNTG 1371
Query: 1284 DSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKD 1343
DSGK P P SPP SVRPGQVPRGAAA VCFKTGLAHLEQNQLPDALSCFDEAFLALAKD
Sbjct: 1372 DSGKPPGQPQSPPASVRPGQVPRGAAAPVCFKTGLAHLEQNQLPDALSCFDEAFLALAKD 1431
Query: 1344 HSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQT 1403
SRGAD+KAQATICAQYKIAVTLL+EILRLQ+VQG S A+SAKDEMARLSRHL SLPL
Sbjct: 1432 QSRGADIKAQATICAQYKIAVTLLREILRLQRVQGAS-ALSAKDEMARLSRHLASLPLLA 1490
Query: 1404 KHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNKSID 1463
KHRINCIRTAIKRNMEVQNY Y+KQMLELLLSKAPASKQ+ELR L+D+CVQRG SNKSID
Sbjct: 1491 KHRINCIRTAIKRNMEVQNYGYSKQMLELLLSKAPASKQEELRGLVDLCVQRGTSNKSID 1550
Query: 1464 PLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALAGPVP-- 1521
PLEDPSQ C+ATLSRLSTIGYDVCDLCGAKF+ALS+PGCIICGMGSIKRSDALAGP P
Sbjct: 1551 PLEDPSQLCSATLSRLSTIGYDVCDLCGAKFAALSSPGCIICGMGSIKRSDALAGPAPVS 1610
Query: 1522 TPFG 1525
TPFG
Sbjct: 1611 TPFG 1614
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518605|ref|XP_003629591.1| Vascular protein [Medicago truncatula] gi|355523613|gb|AET04067.1| Vascular protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2250 bits (5831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1134/1569 (72%), Positives = 1283/1569 (81%), Gaps = 75/1569 (4%)
Query: 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 61
E IS DTEVH+ALTPLQPVVFFGFH+RMSVTVVGTVEGGR PTKIK DLKK IVNLACHP
Sbjct: 106 EQISSDTEVHMALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKPDLKKAIVNLACHP 165
Query: 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121
RLPVLYVAYA+GLIRAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR+GTL
Sbjct: 166 RLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRQGTL 225
Query: 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181
LAWDVS ERPSMIGI QVGSQPI SVA+LP LRLLVTL +DG+LQVW+TRV +NPNRP
Sbjct: 226 LAWDVSTERPSMIGIKQVGSQPIKSVAFLPTLRLLVTLSKDGNLQVWETRVTVNPNRPST 285
Query: 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFA-----NFTGG 236
QA+FFEPA+IESIDIPRILSQQGGEAVYPLPR++A+E HP+ NLA L+FA N T
Sbjct: 286 QASFFEPAAIESIDIPRILSQQGGEAVYPLPRIKAIEFHPKSNLAALVFAVACYVNVTSA 345
Query: 237 DNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMG------SSGIL--------- 281
+ KN+A+Y+REGRKQLFAVLQSARGSS ++ L S+ S GI+
Sbjct: 346 ETSKNKASYSREGRKQLFAVLQSARGSSDMLMVRVLCSICYKGKTFSLGIIWGVSRPSAS 405
Query: 282 --------ADHQLQAQLQEHHLK-----------GHSHLTISDIARKAFLYSHFMEGHAK 322
H L +++ EH HS++TISDIARK HFMEGH K
Sbjct: 406 SSTPRASSKRHCLLSEI-EHDTYICLWGSFAACCNHSNITISDIARK-----HFMEGHMK 459
Query: 323 SAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYN 382
+PISRLPLIT+ D+KH LKD PVC+P+HLELNFFN+ NRVLHYP RAFY+DG+NL+A++
Sbjct: 460 ISPISRLPLITVLDTKHHLKDFPVCEPYHLELNFFNKANRVLHYPSRAFYMDGLNLMAHS 519
Query: 383 LCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQL 442
L SG+D IYRKLY++IPG VEY K++++SK+Q+LFLVVYEFSG+TNEVVLY EN D Q
Sbjct: 520 LSSGSDIIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVVYEFSGSTNEVVLYWENTDVQT 579
Query: 443 ADSKSSTVKG----RDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDH 498
+SKSSTVKG RDAAFIG NE+QFAILD+D+TGLALY L G T QE D N+ V +
Sbjct: 580 GNSKSSTVKGISSRRDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKD-NDKVFEE 638
Query: 499 NQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSARA- 557
NQ T+TNVGS++GP MFE+EVDRIFSTP++STLMFA G+QIG+ KL++GYRLS
Sbjct: 639 NQPTETNVGSIRGPTPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLSTSTA 698
Query: 558 -GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSST 616
GHY+ TKS+GKKSIKLK E++L+V WQET RG VAG+LTT RVLIVSA LD+LA +ST
Sbjct: 699 NGHYISTKSDGKKSIKLKRNEIVLQVHWQETLRGNVAGILTTHRVLIVSAALDVLAGTST 758
Query: 617 KFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLLLA 676
K SLLWVGPALLFST A+S+LGWDGKVR +LSISMP AVLVGALNDRLLLA
Sbjct: 759 K---------SLLWVGPALLFSTTAAVSILGWDGKVRPVLSISMPYAVLVGALNDRLLLA 809
Query: 677 NPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRIT 736
+PTEINPRQKKG+EIKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFDSLRIT
Sbjct: 810 SPTEINPRQKKGVEIKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFDSLRIT 869
Query: 737 PRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDY 796
PRSLDILAKG PVCGDLAVSLSQ+GPQFTQV+RG+YA+KALRFSTALSVLKDEFLRSRDY
Sbjct: 870 PRSLDILAKGSPVCGDLAVSLSQSGPQFTQVMRGVYAVKALRFSTALSVLKDEFLRSRDY 929
Query: 797 PKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQ 856
P+CPPTS LFHRFRQL YACI++GQFDSAKETFE IADYE +LDLFICHLNPSAMRRLAQ
Sbjct: 930 PRCPPTSHLFHRFRQLAYACIRFGQFDSAKETFETIADYEGMLDLFICHLNPSAMRRLAQ 989
Query: 857 RLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTNLK 916
+LE+EG + ELRRYCERILR+RSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT +K
Sbjct: 990 KLEDEGLDSELRRYCERILRIRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTTVK 1049
Query: 917 SIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPAGA 976
IPQWELA EV PYM+TDDG +PSII DH+G+YLGSIKGRG IVEV E SLVK F+PAG
Sbjct: 1050 DIPQWELAAEVTPYMKTDDGTVPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKAFMPAGN 1109
Query: 977 DNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEFKK 1036
DNK NG+ SSVKS N+ + K S MGLE+L Q +S+A DEQAKAEEEFKK
Sbjct: 1110 DNKVNGLELSSVKSISNQPNVVG--NPKGDSSMGLESLNKQLANSSA-DEQAKAEEEFKK 1166
Query: 1037 TMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGPPMR 1096
+MYG AADGSSSDEEG SK K++ I+IRDKPI+SS VDVNKIKEATKQFKLGEGL PPMR
Sbjct: 1167 SMYG-AADGSSSDEEGASKIKRIHIKIRDKPISSSTVDVNKIKEATKQFKLGEGLPPPMR 1225
Query: 1097 TKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSV 1156
T+S GSQDLGQ+ S P G I S P DLFGT++ QP +S+P +
Sbjct: 1226 TRS-NSGSQDLGQILSLPPVTTG---IPTATVSTPVDLFGTDASTQPEMISQPTTGAVGG 1281
Query: 1157 GAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSG 1216
G PIPEDFFQNTI S+ VAASLPP GT+LSK+ + G+ + PNQA+A A G
Sbjct: 1282 GVAIGPIPEDFFQNTISSVHVAASLPPAGTFLSKF---TPGIQTSNTTPNQASATEAGFG 1338
Query: 1217 LPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSA 1276
L GGV Q QP +P+ESIGLPDGGVPPQS Q Q Q+ PAQ S+QPLDLS
Sbjct: 1339 L-QGGVSNQAIQQPVVPMESIGLPDGGVPPQSMPQAVVTPQPQLQPAQPQISSQPLDLSV 1397
Query: 1277 LGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEA 1336
LGVPNS DSGK P + S P SV PGQVPRGA ASVCFKTGLAHLE N L DALSCFDE+
Sbjct: 1398 LGVPNSADSGKLPQS-GSAPVSVHPGQVPRGAPASVCFKTGLAHLELNHLSDALSCFDES 1456
Query: 1337 FLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHL 1396
FLALAK+ SRG+D+KAQATICAQYKIAVTLL+EI RLQ+V GPS AISAKDEMARLSRHL
Sbjct: 1457 FLALAKEQSRGSDIKAQATICAQYKIAVTLLREIGRLQRVHGPS-AISAKDEMARLSRHL 1515
Query: 1397 GSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRG 1456
GSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELLLSKAP++KQ+E RSL+D+CVQRG
Sbjct: 1516 GSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPSNKQEEFRSLVDLCVQRG 1575
Query: 1457 LSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDAL 1516
L+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++APGCI+CGMGSIKRSDA+
Sbjct: 1576 LTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIKRSDAI 1635
Query: 1517 AGPVPTPFG 1525
A VP+PFG
Sbjct: 1636 AASVPSPFG 1644
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816310|ref|XP_002876038.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321876|gb|EFH52297.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2224 bits (5762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1120/1546 (72%), Positives = 1262/1546 (81%), Gaps = 95/1546 (6%)
Query: 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 61
E IS DTEVHLA+TPLQPVVFFGF +RMSVTVVGTVEGGRAPTKIKTDLKKPIVN+ACHP
Sbjct: 107 EHISSDTEVHLAVTPLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNIACHP 166
Query: 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121
RLPVLYVAYA+GLIRAYNIHTYAVHYTLQLDNTIKL+GA +FAFHPTLEW+FVGDRRGTL
Sbjct: 167 RLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTL 226
Query: 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181
LAWDVS ERP+MIGI QVGSQPITS++WL MLR+LVT+ +DGSLQVWKTRVIINPNRP
Sbjct: 227 LAWDVSTERPNMIGITQVGSQPITSISWLSMLRVLVTVSKDGSLQVWKTRVIINPNRPST 286
Query: 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241
Q NFFEPA++ESID+PRILSQQGGEAVYPLPR++ LEVHP+LNLA L+FA +KN
Sbjct: 287 QTNFFEPAAMESIDVPRILSQQGGEAVYPLPRIKTLEVHPKLNLAALIFA-------VKN 339
Query: 242 RAAYT------REGRKQLFAVLQSARGSSASV--------LKEKLSSMGSSGILADHQLQ 287
+ + R R L+ + S+S+ L+EKLSSMGSSGILA+HQLQ
Sbjct: 340 TSYWHSSLRTWRVMRTLKIEQLRLGKEGSSSLQFCKVLGDLQEKLSSMGSSGILAEHQLQ 399
Query: 288 AQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVC 347
A LQEHH KG S LTISDIARKAFLYS GHAK+APISRLPLIT+ D+K QLKDIP
Sbjct: 400 ALLQEHHHKGQSQLTISDIARKAFLYS----GHAKTAPISRLPLITVVDAKDQLKDIP-- 453
Query: 348 QPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPK 407
PFHLELNFFN+ NRVLHYPVRAFY++G+NL+A+NLCSG D+IY+KLY++IPG VEY+ K
Sbjct: 454 -PFHLELNFFNKPNRVLHYPVRAFYIEGLNLMAHNLCSGTDNIYKKLYTSIPGNVEYHSK 512
Query: 408 HMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAI 467
H+VYS+++ LFLVV+EFSG TNEVVLY EN +QL +SK ST KG DAAFIGPN+DQFAI
Sbjct: 513 HIVYSRKRHLFLVVFEFSGATNEVVLYWENTGSQLPNSKGSTAKGCDAAFIGPNDDQFAI 572
Query: 468 LDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFST 527
LD+DKTGL++YIL T E +E N + + NQ+ + + +QGP Q MFE+EVDR+FST
Sbjct: 573 LDEDKTGLSMYILPKYTTMEE-NEKNLLSEENQNKEADASGIQGPQQFMFETEVDRVFST 631
Query: 528 PIESTLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQET 587
PIESTLMFAC+G QIG+AKL QGYRLSA GHY+ T+ EG+KSIKLK E+ L+V WQET
Sbjct: 632 PIESTLMFACNGTQIGLAKLFQGYRLSASDGHYISTQGEGRKSIKLKKHEIALQVQWQET 691
Query: 588 QRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLG 647
RGYVAG+LTTQRVL+VS LLWVGPALLFST TA+ +LG
Sbjct: 692 PRGYVAGILTTQRVLMVS----------------------LLWVGPALLFSTTTAVCLLG 729
Query: 648 WDGKVRNILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFA 707
WDGKVR ILSIS P A LVGALNDRLLLANPT+I+P+QKKGIEIKSCLVGLLEPLLIGF+
Sbjct: 730 WDGKVRTILSISTPYAALVGALNDRLLLANPTDISPKQKKGIEIKSCLVGLLEPLLIGFS 789
Query: 708 TMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQV 767
TMQQ FEQK+DLSEILYQIT+RFDSLRITPRSLDILA+ PVCGDLAVSL+QAGPQF QV
Sbjct: 790 TMQQTFEQKVDLSEILYQITTRFDSLRITPRSLDILARSAPVCGDLAVSLAQAGPQFNQV 849
Query: 768 LRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKE 827
LR YAIKALRFSTALSVLKDEFLRSRDYPKCPPTS LF RFRQLGYACIKYGQFDSAKE
Sbjct: 850 LRCAYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSLLFQRFRQLGYACIKYGQFDSAKE 909
Query: 828 TFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIF 887
TFEVI DYES+LDLFICHLNPSAMRRLAQ+LEEE +PELRRYCERILRVRSTGWTQGIF
Sbjct: 910 TFEVIGDYESMLDLFICHLNPSAMRRLAQKLEEESGDPELRRYCERILRVRSTGWTQGIF 969
Query: 888 ANFAAESMVPKGPEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVG 947
ANFAAESMVPKGPEWGGGNWEIKTPT++KSIP+WELA EV+PYM+ +DG IPSI++DH+G
Sbjct: 970 ANFAAESMVPKGPEWGGGNWEIKTPTDMKSIPKWELAGEVMPYMKNEDGTIPSIVADHIG 1029
Query: 948 IYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGS 1007
+YLG +KGR +VE+ E SLV +KP G+ S+ K + + S
Sbjct: 1030 VYLGCVKGRVNVVEIKEDSLV---------SKPGGL---SLLGKPVSDKPLALPAGESSS 1077
Query: 1008 LMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKP 1067
LMGLE+L QN + DEQAKA EEFKKTMYGAA DGSSSDEEG +K KKLQIRIR+KP
Sbjct: 1078 LMGLESLGKQNVA----DEQAKAAEEFKKTMYGAAGDGSSSDEEGVTKPKKLQIRIREKP 1133
Query: 1068 IASSAVDVNKIKEATKQFKLGEGLGPPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAP 1126
S+ VDVNK+KEA K FKLG+GLG M RTKS+ GSQDLGQ+ SQPS++
Sbjct: 1134 -TSTTVDVNKLKEAAKTFKLGDGLGLTMSRTKSINTGSQDLGQMLSQPSSSTAATTTAPG 1192
Query: 1127 ASSAPGDLFGTESWV-QPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPG 1185
++SAP D F SW QP VS+PA G + PIPEDFFQNTIPS++VA +LPPPG
Sbjct: 1193 SASAPVDPFAMGSWTQQPQPVSQPAPPGVAA-----PIPEDFFQNTIPSVEVAKTLPPPG 1247
Query: 1186 TYLSKYDQ---VSQGVASGKVAPNQANAPA-ADSGLPDGGVPPQIAPQPAIPVESIGLPD 1241
TYLSK DQ +QGV PNQAN D GLPDGG+P Q + QP P +++GLPD
Sbjct: 1248 TYLSKMDQAAIAAQGV------PNQANNTTLPDIGLPDGGIPQQTSQQPGAPFQTVGLPD 1301
Query: 1242 GGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRP 1301
GGVP Q GQT + P+QVP STQPLDLS LGVPN+GDSGK P P SPP SVRP
Sbjct: 1302 GGVPQQYPGQT-------LGPSQVPVSTQPLDLSVLGVPNTGDSGKPPGQPQSPPASVRP 1354
Query: 1302 GQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYK 1361
GQVPRGAAA VCFKTGLAHLEQNQLPDALSCFDEAFLALAKD SRGAD+KAQATICAQYK
Sbjct: 1355 GQVPRGAAAPVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDQSRGADIKAQATICAQYK 1414
Query: 1362 IAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQ 1421
IAVTLL+EILRLQ+VQG S A+SAKDEMARLSRHL SLPL KHRINCIRTAIKRNMEVQ
Sbjct: 1415 IAVTLLREILRLQRVQGAS-ALSAKDEMARLSRHLASLPLLAKHRINCIRTAIKRNMEVQ 1473
Query: 1422 NYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLST 1481
NY Y+KQMLELLLSKAPAS+Q+ELR L+D+CVQRG SNKSIDPLEDPSQ C+ATLSRLST
Sbjct: 1474 NYGYSKQMLELLLSKAPASRQEELRGLVDLCVQRGTSNKSIDPLEDPSQLCSATLSRLST 1533
Query: 1482 IGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALAGPVP--TPFG 1525
IGYDVCDLCGAKF+ALS+PGCIICGMGSIKRSDALAGP P TPFG
Sbjct: 1534 IGYDVCDLCGAKFAALSSPGCIICGMGSIKRSDALAGPAPVSTPFG 1579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1525 | ||||||
| DICTYBASE|DDB_G0278661 | 1340 | DDB_G0278661 "WD40 repeat-cont | 0.327 | 0.372 | 0.226 | 3.3e-15 | |
| DICTYBASE|DDB_G0289571 | 943 | DDB_G0289571 [Dictyostelium di | 0.123 | 0.200 | 0.258 | 1.3e-06 | |
| FB|FBgn0038642 | 950 | Muc91C "Mucin 91C" [Drosophila | 0.138 | 0.222 | 0.285 | 0.00014 | |
| POMBASE|SPBPJ4664.04 | 1207 | SPBPJ4664.04 "coatomer alpha s | 0.118 | 0.149 | 0.251 | 0.00044 | |
| SGD|S000000064 | 426 | SWD1 "Subunit of the COMPASS ( | 0.062 | 0.225 | 0.323 | 0.00054 |
| DICTYBASE|DDB_G0278661 DDB_G0278661 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 3.3e-15, Sum P(3) = 3.3e-15
Identities = 130/574 (22%), Positives = 233/574 (40%)
Query: 339 HQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTI 398
H P+ L + FF +YP + DG + +Y +G I +KL T
Sbjct: 576 HLNHSFPLVSKLPLPMGFFFEPENTFNYPSEITFFDGTYVKSYLPLNG---ITKKLIDTP 632
Query: 399 ----------PGTVEYYPK--HMVYSKRQQLFLVVYEFSGTTNEVVLYRENV-DTQ-LAD 444
G E K +++ QLF ++Y+ + L + + D Q L +
Sbjct: 633 IMVNSASGMGSGGGEDISKGKKFLFNNEFQLFALIYDSFSVAAQAQLSKYLIMDLQGLVN 692
Query: 445 SKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDT 504
+ G D FIG N+ Q IL GL + K TL + GV S+
Sbjct: 693 QQGD---GSDCVFIGNNQ-QILIL-----GLDGKLAKVATLSK-----QGV-----SSFK 733
Query: 505 NVGSVQGPLQLMFESEVDRIFSTPI--ESTLMFACDGDQ-IGMAKLVQGYRLSARAGHYL 561
N V P + + STP+ +++ C + +K V S + + +
Sbjct: 734 NFTLV--P-------RITSVHSTPLGGNKVVLYFCQEKSCLVFSKNVNQSDPSCKDNYMV 784
Query: 562 QTKSEGKKSI-KLKVTEVMLKVAWQETQRG--YVAGVLTTQRVLIVSADLDILAS--SST 616
+G I +L+ E + ++ WQ + ++ +LT QR++I ++ L I+ S
Sbjct: 785 DI--DGDNGILQLQPNEKVFQIEWQSDPKSSQHICAILTNQRIIITNSRLRIINQIHSPP 842
Query: 617 KFDKGLPS-FRSLLWVGPALLFSTATAISVLGWDGKV--RNILSISMPNAVLVGALNDRL 673
+ S F+S+ W+ LL++T+T + + + I ++S+ +L L DR+
Sbjct: 843 NHHQSTSSYFQSIFWLEWTLLYTTSTHLMYMTLQNNQAPKPISTLSISPIILSTILPDRM 902
Query: 674 LLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFE-QKLDLSEILYQITSRFDS 732
+ P K ++ +G+LE L+IG ++ + + +K LS L I + D
Sbjct: 903 IFGYQGLQVPG-KNETTVRCQAIGILECLIIGLLSLPPFIQYEKKYLSSCLQNIVQKLDY 961
Query: 733 LRITPRSLDILAKGPPVCGDLAVSLS------QAGPQFTQVLRGIYAIKALRFSTALSVL 786
RI+ LD L + DLA SLS Q+ + R + K ++ A L
Sbjct: 962 TRISKHVLDKLRERSFT--DLAYSLSNDMKISQSKQSSLEKFRMAWISK--QYEAANRHL 1017
Query: 787 KDEFLRSRDYPKCPPT-----SQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDL 841
EF R T ++L R G C+ G + AK+ F+ ++++ +L +
Sbjct: 1018 SIEFNRISIIKNPNDTEKRQFNKLKENMRDFGRECMNAGHYLLAKDCFQKLSEHIYLLQI 1077
Query: 842 FICHLNPSAMRRLAQRLEEEGANPELRRYCERIL 875
I + ++ + + E G + L C++ L
Sbjct: 1078 SILLNDRDSVIAIKRDAELRGDDHVLLAACDKYL 1111
|
|
| DICTYBASE|DDB_G0289571 DDB_G0289571 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 53/205 (25%), Positives = 95/205 (46%)
Query: 1281 NSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLAL 1340
N D+ S +NP SP + + + K + +E +A+ D+ L
Sbjct: 685 NFTDTASSNSNPTSPISQ------KLNSESIEYMKKCINQMENGNFKEAILDLDQCIKIL 738
Query: 1341 AKDHSRGADV-KAQATICAQYKIAVTLLQEILRLQK-VQGPSAA--ISAKDE-MARLSRH 1395
+ HS + + + C YK+ + LL EI ++K ++ S +S+ E +A LS+
Sbjct: 739 LQVHSNNLSIIQNEINFCVGYKVTLNLLIEIKEIEKKIEQESNKDEVSSYYETIALLSKF 798
Query: 1396 LGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP--ASKQDELRSL-IDMC 1452
L +PLQT HR+ C + A+K N+ N+ A +++E++L K K+ E + + C
Sbjct: 799 LVDIPLQTNHRLVCAKMAVKYNLISNNFGIAGKLIEIILQKGINLGDKEKEQYEIQLQQC 858
Query: 1453 VQRGLSNKSIDPLEDPSQFCAATLS 1477
+N S+ PS C ++ S
Sbjct: 859 RDNQFNNSSLPMYICPS--CKSSTS 881
|
|
| FB|FBgn0038642 Muc91C "Mucin 91C" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 0.00014, P = 0.00014
Identities = 66/231 (28%), Positives = 88/231 (38%)
Query: 1093 PPMRTKSL-IPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSK--- 1148
PP ++ P S G S PS++ G AP+SS + S+ PA+ S
Sbjct: 255 PPSQSYGAPAPPSSKYGPPKSAPSSSYGAPRPAAPSSSYGAPAPPSSSYGAPAAPSSSYG 314
Query: 1149 -PASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTY-LSKYDQVSQGVASGKVAPN 1206
PA+ SS GA P + PS A PP +Y S G + +
Sbjct: 315 APAAPSSSYGAPAAP-SSSYGAPAPPSKSYGAPAPPSSSYGAPAAPSKSYGAPAPPSSSY 373
Query: 1207 QANAPAADS-GLPDXXXXXXXXXXXXXXXESIGLPDGGVPPQSS-GQTPFPYQSQVLPAQ 1264
A AP + S G P +S G P PP SS G P +S PA
Sbjct: 374 GAPAPPSSSYGAP--APPSPSYGAPAPPSKSYGAP---APPSSSYGAPAAPSKSYGAPA- 427
Query: 1265 VPPSTQ---PLD-LSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAAS 1311
PPS+ P S+ G P++ S P PA P S G P+ +S
Sbjct: 428 -PPSSSYGAPAPPSSSYGAPSAPSSSYGPPKPAPAPPSSSYGAPPQAPVSS 477
|
|
| POMBASE|SPBPJ4664.04 SPBPJ4664.04 "coatomer alpha subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 50/199 (25%), Positives = 85/199 (42%)
Query: 1321 LEQNQLPDALSCFDEA-FLAL---AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKV 1376
++ N++ +A CF +LAL A ++ A C +Y +A++ E RL +
Sbjct: 1007 VKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVALSCELERRRLGE- 1065
Query: 1377 QGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSK 1436
+ A+ LS + S LQ H I +R AI + +++NY A + LL
Sbjct: 1066 EDTKRALE-------LSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQL 1118
Query: 1437 APASKQDELRSLIDMCVQRGLSNKSIDPLEDPS---QFCAATLSRL-STIGYDVCDLCGA 1492
A + E + R + + + DP + C TL+ + S +DVC +CGA
Sbjct: 1119 AESGPAAEAANRAITLGDRN-PHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCSVCGA 1177
Query: 1493 KF-SALSAPGCIICGMGSI 1510
+ C +C +G I
Sbjct: 1178 VYHKGYVNEVCTVCDVGGI 1196
|
|
| SGD|S000000064 SWD1 "Subunit of the COMPASS (Set1C) complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 0.00054, P = 0.00054
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 90 QLDNTIKL-LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS--QPITS 146
+L +TI+ L F P ++L +G G L+ +D+ RP + +G+ +PITS
Sbjct: 18 KLTHTIENPLRTECLQFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITS 77
Query: 147 VAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEP 188
+AW P RLL+T RD S+++W + P++P + F P
Sbjct: 78 IAWSPDGRLLLTSSRDWSIKLWD---LSKPSKPLKEIRFDSP 116
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1525 1480 0.00096 124 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 628 (67 KB)
Total size of DFA: 565 KB (2255 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 133.25u 0.07s 133.32t Elapsed: 00:00:05
Total cpu time: 133.25u 0.07s 133.32t Elapsed: 00:00:05
Start: Sat May 11 11:32:05 2013 End: Sat May 11 11:32:10 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1525 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-06 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 7e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-05 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-04 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 5e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 0.002 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE 110
+ ++A P L + +DG I+ +++ T TL+ G + AF P
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----GVNSVAFSPDGY 232
Query: 111 WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169
L G GT+ WD+ + + + +TS+AW P + L + DG++++W
Sbjct: 233 LLASGSEDGTIRVWDLRTGEC--VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE 110
+ +A P +L DG I+ +++ T + TL A
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL----KGHTGPVRDVAASADGT 64
Query: 111 WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170
+L G T+ WD +E + + + ++SVA+ P R+L + RD +++VW
Sbjct: 65 YLASGSSDKTIRLWD--LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
Query: 171 R 171
Sbjct: 123 E 123
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (122), Expect = 2e-06
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 43 PTKIKTDLKKPIVNLACHPRLPVLYV-AYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG 101
P P+ +LA P +L +DG IR +++ T + + ++ ++ +
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS- 248
Query: 102 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161
F P L G GT+ WD+ S++ + S + SVA+ P +LL +
Sbjct: 249 ---FSPDGSLLASGSSDGTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304
Query: 162 DGSLQVWKTR 171
DG++++W
Sbjct: 305 DGTVRLWDLE 314
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 51 KKPIVNLACHPRLPVLYVAYADGLIRAYN------IHTYAVHYTLQLDNTIKLLGAGAFA 104
+ ++A P + + DG I+ ++ + T H + + A
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-----TGEVN-----SVA 184
Query: 105 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164
F P E L GT+ WD+S + +G ++ + SVA+ P LL + DG+
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 165 LQVWKTR 171
++VW R
Sbjct: 243 IRVWDLR 249
|
Length = 289 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-06
Identities = 42/195 (21%), Positives = 54/195 (27%), Gaps = 8/195 (4%)
Query: 1114 PSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIP 1173
A G APASS P E +PA+ + PA+ + A P + P
Sbjct: 591 APGAAGGEGPPAPASSGPP-----EEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
Query: 1174 SLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPD---GGVPPQIAPQP 1230
+ P D A A A PA P G P Q AP P
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705
Query: 1231 AIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPA 1290
A + D P + Q P G P +PA
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765
Query: 1291 NPASPPTSVRPGQVP 1305
A+P + P
Sbjct: 766 PAAAPAAAPPPSPPS 780
|
Length = 824 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-05
Identities = 48/250 (19%), Positives = 70/250 (28%), Gaps = 33/250 (13%)
Query: 1093 PPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASA 1152
P + PG ++P G PA+ A G P +++PA A
Sbjct: 2742 PAVPAGPATPGGP---ARPARPPTTAGPPAPAPPAAPAAG---------PPRRLTRPAVA 2789
Query: 1153 GSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPA 1212
S + P P D L AA+LPP + + ++ AP P
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP---LPPPTSAQPTAPPPPPGPP 2846
Query: 1213 ADSGLPDGGVPP-----------QIAPQPA----IPVESIGLPDGGVPPQSSGQTPFPYQ 1257
S G V P A +PA PV + P +S+ P
Sbjct: 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARP---AVSRSTESFALPPD 2903
Query: 1258 SQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTG 1317
P Q P P P PP + G + +
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963
Query: 1318 LAHLEQNQLP 1327
L L ++
Sbjct: 2964 LGALVPGRVA 2973
|
Length = 3151 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 72/306 (23%), Positives = 100/306 (32%), Gaps = 46/306 (15%)
Query: 1040 GAAADGSSSDEEGTSKTKKL-QIRIRDKPIASSAVDVNKIKEATKQFKL----------- 1087
G ++D S +EEG+S K + Q P S D +++ Q +L
Sbjct: 124 GESSDSRSVNEEGSSDPKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQV 183
Query: 1088 ------GEGLGPPMRTKSLIP--GSQDLGQLSSQPSAAGGDGNITAPA-------SSAPG 1132
PP + +P GS Q + QP I+AP+ S P
Sbjct: 184 PPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPP 243
Query: 1133 DLFGTESWVQPASVSKPASA-GSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSK- 1190
T S P + + SS G P+P Q LQ +S PP L++
Sbjct: 244 LQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHAL-QQGPVFLQHPSSNPPQPFGLAQS 302
Query: 1191 -----------YDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGL 1239
+ + P Q P + LP P I P P P+ +
Sbjct: 303 QVPPLPLPSQAQPHSHTPPSQSALQPQQ---PPREQPLPPAPSMPHIKPPPTTPIPQLPN 359
Query: 1240 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1299
PP G +PFP LP PP+ +PL P S P S P
Sbjct: 360 QSHKHPPHLQGPSPFPQMPSNLPP--PPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQS 417
Query: 1300 RPGQVP 1305
P Q P
Sbjct: 418 VPAQPP 423
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 5e-05
Identities = 56/226 (24%), Positives = 79/226 (34%), Gaps = 29/226 (12%)
Query: 1092 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1151
GPP P + +L+ A+ + + P+ P D PA+V PA+
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD--------PPAAVLAPAA 2816
Query: 1152 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPG---TYLSKYDQVSQGVASGKVAPNQA 1208
A + P+P S Q A PPPG L V+ G + P+++
Sbjct: 2817 ALPPAASPAGPLP------PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870
Query: 1209 NA--PAADSGLPDGGVP-------PQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ 1259
A PAA + P + + P E P PPQ Q P P Q Q
Sbjct: 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
Query: 1260 VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVP 1305
P P PL A +G S A P ++ PG+V
Sbjct: 2931 PPPPPPPRPQPPL---APTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
|
Length = 3151 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 32/192 (16%), Positives = 47/192 (24%), Gaps = 8/192 (4%)
Query: 1124 TAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPP 1183
AP ++ S P ++PA+ + P+ AA P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAG---AAAAPAEASAAPAPG 646
Query: 1184 PGTYLSKYDQVSQGVASGKVAPNQAN----APAADSGLPDGGVPPQIAPQPAIPVESIGL 1239
V+ AS A APAA P P A +
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP-AQPAPAP 705
Query: 1240 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1299
Q+ P Q+ + P+ + D +PA P PP
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765
Query: 1300 RPGQVPRGAAAS 1311
S
Sbjct: 766 PAAAPAAAPPPS 777
|
Length = 824 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-04
Identities = 53/243 (21%), Positives = 73/243 (30%), Gaps = 37/243 (15%)
Query: 1125 APASSAPGDLFGTESWVQPASVSKP-ASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPP 1183
PA + G G +V P A A ++VGA P T + A+L P
Sbjct: 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVP------AVTAVTGAAGAALAP 412
Query: 1184 PGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPV----ESIGL 1239
+ A+ AP A AP A + D +S
Sbjct: 413 KA--------AAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464
Query: 1240 PDGGVPPQSSGQTPFPYQSQVLPAQ---VPPSTQPLDLSALGV-----PNSGDSGKSPAN 1291
PP SG P A P + P + V P + +PA
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524
Query: 1292 PASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVK 1351
A P RP P AAA+ + G A AL A + ++ D A
Sbjct: 525 AAPPAPEARP---PTPAAAAPAARAGGA-------AAALDVLRNAGMRVSSDRGARAAAA 574
Query: 1352 AQA 1354
A+
Sbjct: 575 AKP 577
|
Length = 830 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (101), Expect = 7e-04
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 58 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 117
+ P +L +DG IR +++ + + ++ +L + AF P + L G
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL---SVAFSPDGKLLASGSS 304
Query: 118 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDGSLQVWKTR 171
GT+ WD+ + ++ P++S+++ P L+ DG++++W R
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359
|
Length = 466 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 45/229 (19%), Positives = 68/229 (29%), Gaps = 26/229 (11%)
Query: 1092 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1151
P + +++ P + P GD AP S P D + P
Sbjct: 2579 EPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD---------THAPDPPPP 2629
Query: 1152 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQ---- 1207
+ S + P+ T+P + P PG G A+ +P Q
Sbjct: 2630 SPSPAANE----PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685
Query: 1208 -----ANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLP 1262
P PP P+PA P P + +P + P
Sbjct: 2686 RAARPTVGSLTSLADPP---PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742
Query: 1263 AQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAAS 1311
A P + P + +PA PA+P P ++ R A AS
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP-PRRLTRPAVAS 2790
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 51/226 (22%), Positives = 76/226 (33%), Gaps = 33/226 (14%)
Query: 1093 PPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKP-AS 1151
P + + S S + P AA P +++P + QP + P
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 1152 AGSSVGAQGQPIPEDFFQNTIPSLQ----VAASLPPPGTYLSKYDQVSQGVASGKVAPNQ 1207
S+ G P + PS AA PP L++ VS+ S + P+Q
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR-PAVSRSTESFALPPDQ 2904
Query: 1208 ANAPAADSGLPDGGVPPQIAPQ------PAIPVESIGLPDGGVPPQS--------SGQTP 1253
P P PPQ PQ P P P + P + SG P
Sbjct: 2905 PERPPQ----PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
Query: 1254 FPYQSQVLPAQVP-PSTQPLDLSALGVPNSGDSGKSPANPASPPTS 1298
P+ ++P +V P + VP S ++PA+ P T
Sbjct: 2961 QPWLGALVPGRVAVPRFR--------VPQPAPSREAPASSTPPLTG 2998
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 46/190 (24%), Positives = 65/190 (34%), Gaps = 31/190 (16%)
Query: 1125 APASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPP 1184
A +S+P + + A+ + GS + + P P P V+A+ PP
Sbjct: 2673 AAQASSP-----PQRPRRRAA---RPTVGS-LTSLADPPPPPPTPEPAPHALVSATPLPP 2723
Query: 1185 GTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIA--PQPAIPVESIGLPDG 1242
G ++ Q S + + P PA G PP A P PA P P
Sbjct: 2724 GPAAAR--QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
Query: 1243 GVPP-------QSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASP 1295
+ +S P P+ PA V L +A SPA P P
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA-----------SPAGPLPP 2830
Query: 1296 PTSVRPGQVP 1305
PTS +P P
Sbjct: 2831 PTSAQPTAPP 2840
|
Length = 3151 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 134 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169
+ ++ + P+TSVA+ P + L + DG++++W
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 49/251 (19%), Positives = 75/251 (29%), Gaps = 28/251 (11%)
Query: 1088 GEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVS 1147
G G GP T + P +Q ++ +AA A ++AP + +
Sbjct: 369 GGGAGPA--TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR 426
Query: 1148 KPASAGSSVGAQ---GQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVA 1204
PA + Q P + AA+ P + VA+ A
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA--------AGPRPVAAAAAA 478
Query: 1205 PNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ----- 1259
APAA D PP P + PD + P P +
Sbjct: 479 APARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAF 538
Query: 1260 ----VLPAQVP---PSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVP-RGAAAS 1311
PA P + + A P + SG P ++P RG A
Sbjct: 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAA--RLPVRGLAQQ 596
Query: 1312 VCFKTGLAHLE 1322
+ ++ LA +E
Sbjct: 597 LARQSELAGVE 607
|
Length = 700 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (95), Expect = 0.004
Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 36 TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTI 95
+ + + + ++++A P +L +DG +R +++ T + +L L
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328
Query: 96 KLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 154
+ + +F P L G GT+ WD+ +P G + SV++ P R
Sbjct: 329 GPVSS--LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT---LEGHSNVLSVSFSPDGR 383
Query: 155 LLVTLCRDGSLQVWKTR 171
++ + DG++++W
Sbjct: 384 VVSSGSTDGTVRLWDLS 400
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1525 | |||
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 100.0 | |
| PF06957 | 422 | COPI_C: Coatomer (COPI) alpha subunit C-terminus; | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.91 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.88 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.88 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.86 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.86 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.83 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.82 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.82 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.81 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.8 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.78 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.78 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.78 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.78 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.77 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.77 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.76 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.75 | |
| PTZ00421 | 493 | coronin; Provisional | 99.74 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.74 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.72 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.72 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.71 | |
| PTZ00421 | 493 | coronin; Provisional | 99.7 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.69 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.68 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.68 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.68 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.68 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.67 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.67 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.67 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.66 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.65 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.65 | |
| PTZ00420 | 568 | coronin; Provisional | 99.65 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.64 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.63 | |
| PTZ00420 | 568 | coronin; Provisional | 99.63 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.63 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.63 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.62 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.62 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.62 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.62 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.61 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.61 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.61 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.6 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.6 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.6 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.57 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.57 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.55 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.55 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.54 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.53 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.51 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.51 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.5 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.5 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.5 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.5 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.5 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.49 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.49 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.49 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.49 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.49 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.48 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.48 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.47 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.47 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.46 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.46 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.46 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.45 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.45 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.44 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.43 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.42 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.41 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.4 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.4 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.38 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.38 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.38 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.37 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.36 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.36 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.35 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.34 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.33 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.33 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.33 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.33 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.28 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.27 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.27 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.27 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.26 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.26 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.26 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.26 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.25 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.22 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.22 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.2 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.19 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.18 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.14 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.14 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.14 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.14 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.14 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.13 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.13 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.12 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.12 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.11 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.11 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.11 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.1 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.09 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.09 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.09 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.09 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.09 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.06 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.05 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.05 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.02 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.01 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.0 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.0 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.99 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.98 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.97 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.95 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.95 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.95 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.95 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.92 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.84 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.8 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.8 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.79 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.79 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.78 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.77 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.77 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.64 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.62 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.6 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.56 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.55 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.54 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.52 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.5 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.48 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.46 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.46 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.45 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.43 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.43 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.42 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.42 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.41 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.37 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.37 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.31 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.26 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.22 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.15 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.15 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.13 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.13 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.13 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.11 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.09 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.07 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.07 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.07 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.06 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.04 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.03 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.03 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.02 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.01 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.0 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.99 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.95 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.91 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.89 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.87 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.85 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.85 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.83 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.82 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.82 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.81 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.77 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.76 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.76 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.74 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.72 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.7 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.7 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.69 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.67 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.66 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.64 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.6 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.58 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.56 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.52 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.48 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.48 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.44 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.42 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.4 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.3 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.26 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.26 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.2 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.2 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.19 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.16 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.15 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.14 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.08 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.02 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.0 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.98 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.84 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.8 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.77 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.62 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 96.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.47 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.46 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.42 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.41 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.31 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.29 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 96.26 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.12 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.11 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.0 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.9 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 95.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.69 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 95.64 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.63 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 95.63 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 94.91 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 94.75 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 94.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 94.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.55 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 94.45 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.0 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 93.99 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 93.96 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.88 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.74 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.56 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 93.04 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.83 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.79 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 92.53 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 92.38 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 91.99 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 91.45 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 91.44 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 91.18 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 90.51 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.41 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 90.23 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 89.98 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 89.93 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 89.45 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 88.83 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 88.75 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 88.7 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 88.46 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 88.34 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 88.32 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 87.89 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 87.61 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 87.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.44 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 87.25 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 86.81 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 86.74 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 86.1 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 85.01 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 84.94 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 84.78 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 84.58 | |
| PF13763 | 80 | DUF4167: Domain of unknown function (DUF4167) | 84.35 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 84.22 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 83.12 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 83.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 81.37 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 81.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 80.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 80.25 |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-165 Score=1472.81 Aligned_cols=1135 Identities=18% Similarity=0.257 Sum_probs=873.3
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
-|+|||.+|||+++.| +..|.+||- .++.....+.. |.+||++|+|||++++|+||++|.+||+|++++.+|++++.
T Consensus 14 glsFHP~rPwILtslH-sG~IQlWDY-RM~tli~rFde-HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLH-SGVIQLWDY-RMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred ceecCCCCCEEEEeec-Cceeeeehh-hhhhHHhhhhc-cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence 4899999999999998 788889984 55555555544 99999999999999999999999999999999999999999
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|.++|+ .+.||+..+||+|+|+|.||+||+++ .+.++.+++||+++|+|..|||...+++|+|.|.||||||
T Consensus 91 GHlDYVR-----t~~FHheyPWIlSASDDQTIrIWNwq--sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 91 GHLDYVR-----TVFFHHEYPWILSASDDQTIRIWNWQ--SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred cccceeE-----EeeccCCCceEEEccCCCeEEEEecc--CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 999999 99999999999999999999999999 4778888999999999999999999999999999999999
Q ss_pred eeeecCCCCCCCc-----------cccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCc
Q 000424 170 TRVIINPNRPPMQ-----------ANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDN 238 (1525)
Q Consensus 170 lr~~~~p~~~~~~-----------a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd 238 (1525)
+......+..+.. ...|.. ...-+..+|.++. -+|+|++|||+++++. +|+||
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~---~DaVVK~VLEGHD-------RGVNwaAfhpTlpliV------SG~DD 227 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ---TDAVVKHVLEGHD-------RGVNWAAFHPTLPLIV------SGADD 227 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCC---cCeeeeeeecccc-------cccceEEecCCcceEE------ecCCc
Confidence 9855543332220 011110 0111233343333 3699999999999998 99999
Q ss_pred ccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhc--cCCCceeeehhhhhceeeeee
Q 000424 239 IKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHL--KGHSHLTISDIARKAFLYSHF 316 (1525)
Q Consensus 239 ~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~--~~~~~~~I~di~r~~~i~s~~ 316 (1525)
..+|.|++.+.+.|+++|+|||.+++.|+++. ++| +.++ .+|+.++||||.||+.++++.
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfh------------p~q------~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH------------PHQ------DLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEec------------Ccc------ceeEecCCCccEEEEecccccceeeee
Confidence 99999999999999999999999999666544 443 2222 379999999999999999965
Q ss_pred cccccccCccccCcceeeeccccccCCCcccccccccccccccccccccccceeeEEeCceEEEeecCCCcccccccccc
Q 000424 317 MEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYS 396 (1525)
Q Consensus 317 ~d~~~k~~~~~~~p~~~i~~~~~~~~~~~vv~~~~~e~~~f~~~~~v~~~~~~~~y~~~~~l~~~~l~~g~~~~~~~L~~ 396 (1525)
+|.+++ |.+..+|..++.+++||.++ +|+++..|+..|+- ..+.+||++++.|+.||+.+..+..+.+ .
T Consensus 290 rendRF-W~laahP~lNLfAAgHDsGm--~VFkleRErpa~~v------~~n~LfYvkd~~i~~~d~~t~~d~~v~~--l 358 (1202)
T KOG0292|consen 290 RENDRF-WILAAHPELNLFAAGHDSGM--IVFKLERERPAYAV------NGNGLFYVKDRFIRSYDLRTQKDTAVAS--L 358 (1202)
T ss_pred ccCCeE-EEEEecCCcceeeeecCCce--EEEEEcccCceEEE------cCCEEEEEccceEEeeeccccccceeEe--c
Confidence 565555 77888888888888888777 57777777776655 5567899999999999999966544433 3
Q ss_pred ccCCCeeeccccccccCCccEEEEEeeccCCcceEEEEEeccccc---ccccCCCCcccceeEEeCCCCCcEEEEeCCCC
Q 000424 397 TIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQ---LADSKSSTVKGRDAAFIGPNEDQFAILDDDKT 473 (1525)
Q Consensus 397 ~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l~---~rnk~G~~~~g~~~~fig~~~n~yAvle~~~~ 473 (1525)
+-+|+.+..|.+|+|||....|++|.+.+++.+|+++|-...+.. ...++| .|.+++|+++ |+|||++.+.+
T Consensus 359 r~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~---tG~~a~fvar--Nrfavl~k~~~ 433 (1202)
T KOG0292|consen 359 RRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG---TGEGALFVAR--NRFAVLDKSNE 433 (1202)
T ss_pred cCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC---CCCceEEEEe--cceEEEEecCc
Confidence 467999999999999999999999998888888888775432222 223347 7899999998 58999999888
Q ss_pred eEEEEEcCCchhhhhhcccCCcccCCCccccccccccCCcccccccccceeeecCCcceeEEeecCCeEEEEeecccccc
Q 000424 474 GLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRL 553 (1525)
Q Consensus 474 ~v~I~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~~~l~~~~~~~~i~~~~~~~~yd~ 553 (1525)
++.|.++.++.++ .++ .+..++.||-+.-+. |+ ..++..|.+
T Consensus 434 ~v~ik~l~N~vtk---------------------kl~------~~~~~~~IF~ag~g~-ll-l~~~~~v~l--------- 475 (1202)
T KOG0292|consen 434 QVVIKNLKNKVTK---------------------KLL------LPESTDDIFYAGTGN-LL-LRSPDSVTL--------- 475 (1202)
T ss_pred ceEEecccchhhh---------------------ccc------CcccccceeeccCcc-EE-EEcCCeEEE---------
Confidence 8998888766653 333 224589999543222 22 222233333
Q ss_pred ccccccccccccccceee-EeeccceEEEEEEcccCCccEEEEEeeeeEEEEccchhhhhccccccCCCCCcceeeeeec
Q 000424 554 SARAGHYLQTKSEGKKSI-KLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVG 632 (1525)
Q Consensus 554 ~t~~~~~i~~~~e~~r~i-~~~~~e~v~~V~Ws~~~~g~~vaI~t~~~i~i~~~~l~~l~~~~~~~~~~~~~IkSg~Wvg 632 (1525)
++|+++ +.. .++.. .|++|+||.+ ++.||+++||+|+|++++|+.+|++||++ |||||.|+.
T Consensus 476 -----fdvQq~----~~~~si~~s-~vkyvvws~d--m~~vAll~Kh~i~i~~kkL~l~~sihEti-----riksgawde 538 (1202)
T KOG0292|consen 476 -----FDVQQK----KKVGSIKVS-KVKYVVWSND--MSRVALLSKHTITIADKKLELLCSIHETI-----RIKSGAWDE 538 (1202)
T ss_pred -----EEeecc----eEEEEEecC-ceeEEEEcCc--cchhhhcccceEEEEecchhheecchhee-----Eeeeceecc
Confidence 333333 112 33333 4899999999 89999999999999999999999999997 999999977
Q ss_pred C-EEEEEcccccEEEeeCCceeeEEEecCCceEEEEEecCcEEEecCCCCCcccCCceeEEeeeccchhhHHHhhhhhhH
Q 000424 633 P-ALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQ 711 (1525)
Q Consensus 633 ~-~fIYtT~t~l~Yl~~~G~~~~I~~l~~~~~yLlgyl~~Rl~l~~~~~~~p~~dk~~~I~s~~l~llE~ll~g~a~~~~ 711 (1525)
+ +|||||.+||+|.+.+|++|+|.|||. |+|++. +.+.+++|++|++.| .+..++-+| +.|++|++.+
T Consensus 539 ~gVfiYtT~nHikYal~~GD~GIikTLd~-~iyitk-v~gn~V~cl~rd~~~--------~~~~IDptE-y~FKlALi~k 607 (1202)
T KOG0292|consen 539 DGVFIYTTLNHIKYALENGDSGIIKTLDK-PIYITK-VKGNKVFCLNRDGEI--------ECLTIDPTE-YRFKLALLNK 607 (1202)
T ss_pred CceEEEEehhhhhhhhccCCcceEEeccc-ceEEEE-eeCCEEEEEecCCCe--------EEEeechHH-HHHHHHHHhh
Confidence 6 999999999999999999999999998 699998 565555554555444 344567799 5999999999
Q ss_pred HHHHhhhHHHHHHHHHhccCCCCCChhHHHHHHcCCCCcccchhhccccCCCCCcchhhhHHhhcCCHHHHHHHHHHhhc
Q 000424 712 YFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL 791 (1525)
Q Consensus 712 ~~~~t~~lr~~l~~~~~~~~s~~i~~~~l~~L~~~~~~~~elAl~ls~~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~ 791 (1525)
.|++ +-.+++ .++.++|.++.||+++| |+|+||++++ |+..||+|||++||||+|++.|++.+
T Consensus 608 ~yde-------Vl~lI~--ns~LvGqaiIaYLqKkg--ypeiAL~FVk-----D~~tRF~LaLe~gnle~ale~akkld- 670 (1202)
T KOG0292|consen 608 KYDE-------VLHLIK--NSNLVGQAIIAYLQKKG--YPEIALHFVK-----DERTRFELALECGNLEVALEAAKKLD- 670 (1202)
T ss_pred hhHH-------HHHHHH--hcCcccHHHHHHHHhcC--Ccceeeeeec-----CcchheeeehhcCCHHHHHHHHHhcC-
Confidence 9975 444444 77889999999999955 9999999998 99999999999999999999999864
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhcCChhHHH--
Q 000424 792 RSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRR-- 869 (1525)
Q Consensus 792 ~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~d~~~LllLy~~~gd~e~L~kLa~~ae~~g~~~~~~~-- 869 (1525)
.| ++ |+.||.+||++||+++||+|||+.+.|++|+|||++|||.|||+||+++||.+. |....+
T Consensus 671 ----d~------d~---w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~-D~~~~~qn 736 (1202)
T KOG0292|consen 671 ----DK------DV---WERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRN-DATGQFQN 736 (1202)
T ss_pred ----cH------HH---HHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhh-hhHHHHHH
Confidence 22 44 556999999999999999999999999999999999999999999999998765 655544
Q ss_pred ------HHHHHHhhccCCcccchhhhhhccccCCCC-CCCCCCcceeecCCCCCCcccccccccccccccCCCCCCCcee
Q 000424 870 ------YCERILRVRSTGWTQGIFANFAAESMVPKG-PEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSII 942 (1525)
Q Consensus 870 ------~c~~il~~~~~~~~~~~~a~~~a~s~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1525)
+-+|+-+.++-|.++ +||.+|.+ +| .|-+ .++++..+. |-+-++|++|.-.....| ++|.
T Consensus 737 alYl~dv~ervkIl~n~g~~~--laylta~~---~G~~~~a---e~l~ee~~~----~~~~lP~~~~~a~ll~pP-~p~~ 803 (1202)
T KOG0292|consen 737 ALYLGDVKERVKILENGGQLP--LAYLTAAA---HGLEDQA---EKLGEELEK----QVPSLPEVDPNASLLQPP-VPIM 803 (1202)
T ss_pred HHHhccHHHHHHHHHhcCccc--HHHHHHhh---cCcHHHH---HHHHHhhcc----ccCCCCCCCCcccccCCC-Cccc
Confidence 678888888889988 99999999 88 3333 445544333 222334445554444433 3332
Q ss_pred cccceeeeccccccceEEEEehhhhhhhccccCCCCCCCCCCCCccccccccCCCCCCCCccccccccchhhhhccCCCc
Q 000424 943 SDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSA 1022 (1525)
Q Consensus 943 ~~~~~~ylg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1525)
+|++||-......+||.+|...-.....+..+.+ .-...+|++ +-+.|.
T Consensus 804 ------~l~nwPLl~~s~~~fe~~~~~~~~~~av~~~~e~---------~~g~e~~~~-----e~~l~e----------- 852 (1202)
T KOG0292|consen 804 ------PLENWPLLSVSKGTFEGALLSRSSSLAVDRDDEG---------DWGEEGWDV-----ELMLGE----------- 852 (1202)
T ss_pred ------cccCCchhhhhhhhhhHhhhhhcccCcccccccc---------cccccchhh-----hhcccc-----------
Confidence 4578999999989999999866532222211110 001112211 000000
Q ss_pred chhHHHHHHHHHHhhhcccCCCCCCCCcccccccccccccccccc---ccccccchhhHHHHhhhccccCCCCCCc-ccc
Q 000424 1023 ADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKP---IASSAVDVNKIKEATKQFKLGEGLGPPM-RTK 1098 (1525)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1098 (1525)
++.....++|+.++|| ..+| ++++.+-+ ..+..+|.+.+.- -..+..+.. .++
T Consensus 853 -------------d~~~~~d~~g~~~~dE--~~gW--dv~d~~l~pe~~~~~~~~~~~~~~------p~~~~~~~~W~~n 909 (1202)
T KOG0292|consen 853 -------------DGILFNDGAGEVGEDE--GGGW--DVGDLDLPPEEDTPKGADDGEFVV------PAQGMSVSIWSNN 909 (1202)
T ss_pred -------------ccccccccccccCccc--ccCc--CcccccCCccccccccccccceec------CCCCCcchhcccc
Confidence 0000111111222222 1366 44443332 1111122211110 001111111 233
Q ss_pred c------cCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccCCccCCCCCCCCccCccCCCCCchhhcccc
Q 000424 1099 S------LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTI 1172 (1525)
Q Consensus 1099 s------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1525)
| +++|+|+.+ |+.|.+| +|+
T Consensus 910 S~L~adhvaAGsf~tA----------------------------~~lL~dq------------vgv-------------- 935 (1202)
T KOG0292|consen 910 SPLAADHVAAGSFETA----------------------------MRLLHDQ------------VGV-------------- 935 (1202)
T ss_pred CcchhhhhhcCchHHH----------------------------HHHHHhh------------hcc--------------
Confidence 3 677798988 9999999 666
Q ss_pred cchhhcccCCCCccccccccccccccccCccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 000424 1173 PSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLP-DGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQ 1251 (1525)
Q Consensus 1173 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 1251 (1525)
.+|.|++..|+..|. . +++++| .+ |- ++
T Consensus 936 -----v~f~p~Kt~fl~iy~------------~-------sR~~l~~~~---~~-------------------~~----- 964 (1202)
T KOG0292|consen 936 -----VNFGPLKTHFLKIYA------------G-------SRTYLRATP---CL-------------------PV----- 964 (1202)
T ss_pred -----eecccHHhhhhhhcc------------c-------cceeccCCC---Cc-------------------cc-----
Confidence 789999999999998 3 556665 22 11 00
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCccCCchhh-HHHHHHHHHHhhcCChHHHH
Q 000424 1252 TPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDAL 1330 (1525)
Q Consensus 1252 ~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~lk~gy~~~t~gkf~eAl 1330 (1525)
+.-| .|...+..+ ...+| +|+++++. ..+|++||++||.|||.||+
T Consensus 965 ----------------~~~~-----~R~~se~~~-----------~~~~P-~v~~~l~~l~~kl~~gy~ltt~gKf~eAi 1011 (1202)
T KOG0292|consen 965 ----------------SLYP-----VRNWSETSS-----------KQGLP-AVGFKLSQLNKKLQKGYKLTTEGKFGEAI 1011 (1202)
T ss_pred ----------------cccc-----ccccccchh-----------hccCC-cccccHHHHHHHHHHHHhhhccCcHHHHH
Confidence 1112 122222111 22334 68888876 55999999999999999999
Q ss_pred HHHHHHHH----HHhcCCcchHHHHHHHHHHHHHHHHHchHHHHHHhhccCCCCccccchHHHHHHHHhhcCCCCchhHH
Q 000424 1331 SCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHR 1406 (1525)
Q Consensus 1331 ~~Fr~iL~----~~v~~~~e~~e~~~li~icreYilal~ll~El~R~~~l~~~~~~~~~~~R~lELaaYfT~c~Lqp~H~ 1406 (1525)
++||+||+ .+|++++|+++++++|+||||||+||+| |++||+ ++ ++ +.+|+||||||||||+|||.|+
T Consensus 1012 e~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~--E~~Rr~-l~-~~----~~~~~~ElAaYFt~~~Lqp~H~ 1083 (1202)
T KOG0292|consen 1012 EKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSV--ELERRK-LK-KP----NLEQQLELAAYFTHCKLQPMHR 1083 (1202)
T ss_pred HHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhhee--eeeecc-cC-Cc----hHHHHHHHHHHhhcCCCCcHHH
Confidence 99999999 7899999999999999999999999999 999999 73 32 3459999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-hhhHHHHHHHHHHHHhcCCCCcccC--CCCCCceeeeccceeccC-C
Q 000424 1407 INCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-I 1482 (1525)
Q Consensus 1407 ~LaLr~Am~~~~K~kNy~tAa~fA~rLL~l~p-~~~~~qarkil~~ce~~~~d~~~i~--~~e~pf~iCa~tltpIy~-~ 1482 (1525)
+||||+||+.+||+|||+||++||+|||+++| +++++||||++++||++|+|+++|+ ++ |||+||++||+|||+ .
T Consensus 1084 ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~l~yd~~-n~f~iC~~t~~Piy~g~ 1162 (1202)
T KOG0292|consen 1084 ILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYELNYDPH-NPFVICGATYVPIYRGR 1162 (1202)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccccccCcccC-CCeeEecccceeeecCC
Confidence 99999999999999999999999999999999 9999999999999999999999999 88 999999999999999 9
Q ss_pred CccccCCCCceecCCC-CCCCccccceeecCCCCCC
Q 000424 1483 GYDVCDLCGAKFSALS-APGCIICGMGSIKRSDALA 1517 (1525)
Q Consensus 1483 ~~v~Cp~cgA~y~~~~-g~~C~iC~l~~IG~~~~~~ 1517 (1525)
|.++||||||+|++.+ |++|+||++++||+ |+.+
T Consensus 1163 p~~~cp~cga~y~~~~~g~iCtvc~V~~ig~-~~~G 1197 (1202)
T KOG0292|consen 1163 PDVSCPYCGACFVPSSKGNICTVCDVGVIGA-DASG 1197 (1202)
T ss_pred CCcCCCcccceeccccCCceeeeeeeeeecC-cccc
Confidence 9999999999999999 99999999999999 6543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-106 Score=939.44 Aligned_cols=695 Identities=20% Similarity=0.261 Sum_probs=569.9
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
+|+-=.+.|||+.||++.+.. ..+|.+|+. +....+..+.- -..||++..|-+..+++++|++|+.||+|++.+++.
T Consensus 13 SdRVKsVd~HPtePw~la~Ly-nG~V~IWny-etqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALY-NGDVQIWNY-ETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred CCceeeeecCCCCceEEEeee-cCeeEEEec-ccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 344456899999999999986 788999985 44333333333 568999999999999999999999999999999999
Q ss_pred EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcC-CCCEEEEEECCC
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDG 163 (1525)
Q Consensus 86 l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP-dg~lLaSgS~Dg 163 (1525)
+++|+ |.+.++ |++.||+.++++|+|+|.+||+||++. ...+.++++||++.|++++|.| |.+.|+|||.|+
T Consensus 90 V~~FeAH~DyIR-----~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 90 VKTFEAHSDYIR-----SIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred eEEeecccccee-----eeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 99999 999999 999999999999999999999999995 3566677999999999999999 567999999999
Q ss_pred CeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecC----------------CCeeEEEEecCCCeEE
Q 000424 164 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPL----------------PRVRALEVHPRLNLAV 227 (1525)
Q Consensus 164 tIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l----------------~~V~~v~~HP~~Nlia 227 (1525)
|||||.+..... ..+---+..||+++| .+.+|++.|.+ .+|.+++.| +.|+.+
T Consensus 164 TVKVWslgs~~~-----nfTl~gHekGVN~Vd-----yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~ 232 (794)
T KOG0276|consen 164 TVKVWSLGSPHP-----NFTLEGHEKGVNCVD-----YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSF 232 (794)
T ss_pred cEEEEEcCCCCC-----ceeeeccccCcceEE-----eccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceE
Confidence 999999862110 000001234566665 33444443332 233344444 445555
Q ss_pred EEeccc-----ccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCC---cc-cchhhHHHHHHHhhhccCC
Q 000424 228 LLFANF-----TGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGS---SG-ILADHQLQAQLQEHHLKGH 298 (1525)
Q Consensus 228 l~F~~~-----s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs---~g-~l~~~ql~~~~~~~~~~~~ 298 (1525)
++|||. ++++|.++|+|.. .|++.+...+++. +|.|+.+. ++ ++.+| |
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs--------~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~-------------D 289 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNS--------KTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGF-------------D 289 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecC--------cceehhhhhhcCC--ceEEEEeecCCCCeEEEec-------------c
Confidence 555554 8999999999983 5788888877664 77777664 22 23444 4
Q ss_pred CceeeehhhhhceeeeeecccccccCccccCcceeeeccccccCCCcccccccccccccccccccccccceeeEEeCceE
Q 000424 299 SHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINL 378 (1525)
Q Consensus 299 ~~~~I~di~r~~~i~s~~~d~~~k~~~~~~~p~~~i~~~~~~~~~~~vv~~~~~e~~~f~~~~~v~~~~~~~~y~~~~~l 378 (1525)
++..+-.++|..|..| ||.++|+ +|..+.+|
T Consensus 290 eg~i~v~lgreeP~vs--Md~~gKI-----------------------------------------------iwa~~~ei 320 (794)
T KOG0276|consen 290 EGSVTVKLGREEPAVS--MDSNGKI-----------------------------------------------IWAVHSEI 320 (794)
T ss_pred CCcEEEEccCCCCcee--ecCCccE-----------------------------------------------EEEcCcee
Confidence 4444445555555555 5555542 24555666
Q ss_pred EEeecCCCccc------cccccccccCCCeeeccccccccCCccEEEEEeeccCCcceEEEEEecccccccccC-CCCcc
Q 000424 379 VAYNLCSGADS------IYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSK-SSTVK 451 (1525)
Q Consensus 379 ~~~~l~~g~~~------~~~~L~~~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l~~rnk~-G~~~~ 451 (1525)
.+.++++-.+. +..+|++|++|++|+|||+|.||||||||+||| +|||||||+ ++||||. | +
T Consensus 321 ~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-----dGEyiIyTa---la~RnK~fG---~ 389 (794)
T KOG0276|consen 321 QAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-----DGEYIIYTA---LALRNKAFG---S 389 (794)
T ss_pred eeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-----CccEEEEEe---eehhhcccc---c
Confidence 66665553222 689999999999999999999999999999999 599999995 9999995 9 9
Q ss_pred cceeEEeCCCCCcEEEEeCCCCeEEEEEcCCchhhhhhcccCCcccCCCccccccccccCCcccccccccceeeecCCcc
Q 000424 452 GRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIES 531 (1525)
Q Consensus 452 g~~~~fig~~~n~yAvle~~~~~v~I~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~~ 531 (1525)
|++|+| +.++|.|||||++ +.|+||+|| ||+ ++++ .+..+++||+++
T Consensus 390 ~~eFvw-~~dsne~avRes~-~~vki~knf--------ke~--------------ksi~------~~~~~e~i~gg~--- 436 (794)
T KOG0276|consen 390 GLEFVW-AADSNEFAVRESN-GNVKIFKNF--------KEH--------------KSIR------PDMSAEGIFGGP--- 436 (794)
T ss_pred ceeEEE-cCCCCeEEEEecC-CceEEEecc--------eec--------------cccc------cccceeeecCCc---
Confidence 999999 5577899999886 489999999 665 4566 334599999986
Q ss_pred eeEEeecCCeEEEEeeccccccccccccccccccccceeeEeeccceEEEEEEcccCCccEEEEEeeeeEEEEccchhhh
Q 000424 532 TLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDIL 611 (1525)
Q Consensus 532 ~l~~~~~~~~i~~~~~~~~yd~~t~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~g~~vaI~t~~~i~i~~~~l~~l 611 (1525)
|+.+++.+++|| |||++. +++|||++.+. .|+|+++ |++|||.+++++||+.+|.+++
T Consensus 437 -Llg~~ss~~~~f------ydW~~~---------~lVrrI~v~~k----~v~w~d~--g~lVai~~d~Sfyil~~n~d~v 494 (794)
T KOG0276|consen 437 -LLGVRSSDFLCF------YDWESG---------ELVRRIEVTSK----HVYWSDN--GELVAIAGDDSFYILKFNADAV 494 (794)
T ss_pred -eEEEEeCCeEEE------EEcccc---------eEEEEEeeccc----eeEEecC--CCEEEEEecCceeEEEecHHHH
Confidence 555899999999 799988 67899999888 8999999 9999999999999999999987
Q ss_pred hccccc----cCCC-----------CCcceeeeeecCEEEEEcccc-cEEEeeCCceeeEEEecCCceEEEEEec--CcE
Q 000424 612 ASSSTK----FDKG-----------LPSFRSLLWVGPALLFSTATA-ISVLGWDGKVRNILSISMPNAVLVGALN--DRL 673 (1525)
Q Consensus 612 ~~~~~~----~~~~-----------~~~IkSg~Wvg~~fIYtT~t~-l~Yl~~~G~~~~I~~l~~~~~yLlgyl~--~Rl 673 (1525)
.+..++ .|+| +|+|++|.|+||||||||++| +||++ +|++.+|+|++. +|||+||++ +|+
T Consensus 495 ~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~v-gGe~~~v~h~~~-~mylLgy~~~~~rv 572 (794)
T KOG0276|consen 495 ANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLV-GGETYTVAHLDR-IMYLLGYVANDNRV 572 (794)
T ss_pred HHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEc-CCceEEEEEecc-chhheeeeecCCEE
Confidence 666653 3333 799999999999999999999 99999 779999999998 699999999 799
Q ss_pred EEecCCCCCcccCCceeEEeee--ccchhhHHHhhhhhhHHHHHhhhHHHHHHHHHhccCCCCCChhHHHHHHc--CCCC
Q 000424 674 LLANPTEINPRQKKGIEIKSCL--VGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAK--GPPV 749 (1525)
Q Consensus 674 ~l~~~~~~~p~~dk~~~I~s~~--l~llE~ll~g~a~~~~~~~~t~~lr~~l~~~~~~~~s~~i~~~~l~~L~~--~~~~ 749 (1525)
||. ||+++|.++. +.++|| ||++||+|++.+...++. |+..++.+++. ++||
T Consensus 573 YL~---------Dke~nVi~y~l~l~vley-------------qt~vmrrd~~~a~~vLp~--I~k~~rt~va~Fle~~g 628 (794)
T KOG0276|consen 573 YLH---------DKELNVISYKILLEVLEY-------------QTLVLRRDLEVADGVLPT--IPKEIRTKVAHFLESQG 628 (794)
T ss_pred EEe---------ecccceEeEeeehHHHHH-------------HHHhhhcccccccccccc--CchhhhhhHHhHhhhcc
Confidence 999 9999988865 799995 499999999999998988 55555555555 5899
Q ss_pred cccchhhccccCCCCCcchhhhHHhhcCCHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 000424 750 CGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETF 829 (1525)
Q Consensus 750 ~~elAl~ls~~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec~ 829 (1525)
|+|-||++++ |+++|||||||+|+|++|+++|.+++ .+.|||+||++||..|++.+|+|||
T Consensus 629 ~~e~AL~~s~-----D~d~rFelal~lgrl~iA~~la~e~~--------------s~~Kw~~Lg~~al~~~~l~lA~EC~ 689 (794)
T KOG0276|consen 629 MKEQALELST-----DPDQRFELALKLGRLDIAFDLAVEAN--------------SEVKWRQLGDAALSAGELPLASECF 689 (794)
T ss_pred chHhhhhcCC-----ChhhhhhhhhhcCcHHHHHHHHHhhc--------------chHHHHHHHHHHhhcccchhHHHHH
Confidence 9999999999 89999999999999999999999875 5889999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhcCChhH---------HHHHHHHHhhccCCcccchhhhhhccccCCCC-
Q 000424 830 EVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPEL---------RRYCERILRVRSTGWTQGIFANFAAESMVPKG- 899 (1525)
Q Consensus 830 q~~~d~~~LllLy~~~gd~e~L~kLa~~ae~~g~~~~~---------~~~c~~il~~~~~~~~~~~~a~~~a~s~~~~~- 899 (1525)
++++||++|||||+++||.++|.+|++.|+++|.+|.+ ...|..+|..++|-.++++||.+|.+|.|..-
T Consensus 690 ~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv 769 (794)
T KOG0276|consen 690 LRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIV 769 (794)
T ss_pred HhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHH
Confidence 99999999999999999999999999999999998887 33899999999999999999999999988777
Q ss_pred CCCC
Q 000424 900 PEWG 903 (1525)
Q Consensus 900 ~e~~ 903 (1525)
++|-
T Consensus 770 ~~wk 773 (794)
T KOG0276|consen 770 ELWK 773 (794)
T ss_pred HHHH
Confidence 7776
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-71 Score=661.82 Aligned_cols=408 Identities=19% Similarity=0.252 Sum_probs=298.9
Q ss_pred CceEEEeecCCC---ccccccccccccCCCeeeccccccccCCccEEEEEeeccCCcceEEEEEecccccccccC-CCCc
Q 000424 375 GINLVAYNLCSG---ADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSK-SSTV 450 (1525)
Q Consensus 375 ~~~l~~~~l~~g---~~~~~~~L~~~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l~~rnk~-G~~~ 450 (1525)
+++|+++|++++ .+.....++.|++|++|++|++|+||||||||+||| +|||+||+ +++||||. |
T Consensus 1 ~~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g-----~geY~iyt---~~~~r~k~~G--- 69 (443)
T PF04053_consen 1 HNEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCG-----DGEYEIYT---ALAWRNKAFG--- 69 (443)
T ss_dssp -TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEE-----TTEEEEEE---TTTTEEEEEE---
T ss_pred CCceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEc-----CCEEEEEE---ccCCcccccC---
Confidence 468899999988 333578889999999999999999999999999999 69999999 48999995 8
Q ss_pred ccceeEEeCCCCCcEEEEeCCCCeEEEEEcCCchhhhhhcccCCcccCCCccccccccccCCcccccccccceeeecCCc
Q 000424 451 KGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIE 530 (1525)
Q Consensus 451 ~g~~~~fig~~~n~yAvle~~~~~v~I~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~ 530 (1525)
+|.+|||+++ |+|||+|+ +.+|+||+++ ++... ++++ ++..+++||+|
T Consensus 70 ~g~~~vw~~~--n~yAv~~~-~~~I~I~kn~--------~~~~~------------k~i~------~~~~~~~If~G--- 117 (443)
T PF04053_consen 70 SGLSFVWSSR--NRYAVLES-SSTIKIYKNF--------KNEVV------------KSIK------LPFSVEKIFGG--- 117 (443)
T ss_dssp E-SEEEE-TS--SEEEEE-T-TS-EEEEETT--------EE-TT-----------------------SS-EEEEE-S---
T ss_pred ceeEEEEecC--ccEEEEEC-CCeEEEEEcC--------ccccc------------eEEc------CCcccceEEcC---
Confidence 9999999874 68999998 4689999998 44432 3455 44669999984
Q ss_pred ceeEEeecCCeEEEEeeccccccccccccccccccccceeeEeeccceEEEEEEcccCCccEEEEEeeeeEEEEccchh-
Q 000424 531 STLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLD- 609 (1525)
Q Consensus 531 ~~l~~~~~~~~i~~~~~~~~yd~~t~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~g~~vaI~t~~~i~i~~~~l~- 609 (1525)
.|++++++++|+| |||+++. ..|+|++.+ |++|+|+++ |++|||+|++.|||++++++
T Consensus 118 -~LL~~~~~~~i~~------yDw~~~~---------~i~~i~v~~---vk~V~Ws~~--g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 118 -NLLGVKSSDFICF------YDWETGK---------LIRRIDVSA---VKYVIWSDD--GELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp -SSEEEEETTEEEE------E-TTT-----------EEEEESS-E----EEEEE-TT--SSEEEEE-S-SEEEEEE-HHH
T ss_pred -cEEEEECCCCEEE------EEhhHcc---------eeeEEecCC---CcEEEEECC--CCEEEEEeCCeEEEEEecchh
Confidence 5666888889999 7999883 346776653 779999999 99999999999999999999
Q ss_pred -----------hhhccccccCCCCCcceeeeeecCEEEEEcccccEEEeeCCceeeEEEecCCceEEEEEec--CcEEEe
Q 000424 610 -----------ILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALN--DRLLLA 676 (1525)
Q Consensus 610 -----------~l~~~~~~~~~~~~~IkSg~Wvg~~fIYtT~t~l~Yl~~~G~~~~I~~l~~~~~yLlgyl~--~Rl~l~ 676 (1525)
+++..+|. .++||||+|+++||||||.+||||++ ||++++|+||+. ++||+||++ +|+|++
T Consensus 177 ~~~~~~~g~e~~f~~~~E~----~~~IkSg~W~~d~fiYtT~~~lkYl~-~Ge~~~i~~ld~-~~yllgy~~~~~~ly~~ 250 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEI----SERIKSGCWVEDCFIYTTSNHLKYLV-NGETGIIAHLDK-PLYLLGYLPKENRLYLI 250 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-----S--SEEEEETTEEEEE-TTEEEEEE-TTEEEEEEE-SS---EEEEEETTTTEEEEE
T ss_pred cccccccCchhceEEEEEe----cceeEEEEEEcCEEEEEcCCeEEEEE-cCCcceEEEcCC-ceEEEEEEccCCEEEEE
Confidence 55555552 36999999999999999999999955 999999999998 699999999 999999
Q ss_pred cCCCCCcccCCceeEEeeeccchhhHHHhhhhhhHHHHHhhhHHHHHHHH------HhccCCCCC--ChhHHHHHHcCCC
Q 000424 677 NPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQI------TSRFDSLRI--TPRSLDILAKGPP 748 (1525)
Q Consensus 677 ~~~~~~p~~dk~~~I~s~~l~llE~ll~g~a~~~~~~~~t~~lr~~l~~~------~~~~~s~~i--~~~~l~~L~~~~~ 748 (1525)
|++.+|.++.|++.|+ . | +++++|+|++.+ .+.+++.+. .++...||.+ +
T Consensus 251 ---------Dr~~~v~~~~ld~~~~-~---------f-k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~--~ 308 (443)
T PF04053_consen 251 ---------DRDGNVISYELDLSEL-E---------F-KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEK--K 308 (443)
T ss_dssp ----------TT--EEEEE--HHHH-H---------H-HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHH--T
T ss_pred ---------ECCCCEEEEEECHHHH-H---------H-HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHH--C
Confidence 8999999988877773 3 3 378888888873 444544111 3555677777 5
Q ss_pred CcccchhhccccCCCCCcchhhhHHhhcCCHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 000424 749 VCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKET 828 (1525)
Q Consensus 749 ~~~elAl~ls~~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec 828 (1525)
||+|+||++++ |+++||||||++|||++|+++|++.+ ..++||+||++||++||+++||+|
T Consensus 309 G~~e~AL~~~~-----D~~~rFeLAl~lg~L~~A~~~a~~~~--------------~~~~W~~Lg~~AL~~g~~~lAe~c 369 (443)
T PF04053_consen 309 GYPELALQFVT-----DPDHRFELALQLGNLDIALEIAKELD--------------DPEKWKQLGDEALRQGNIELAEEC 369 (443)
T ss_dssp T-HHHHHHHSS------HHHHHHHHHHCT-HHHHHHHCCCCS--------------THHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCHHHHHhhcC-----ChHHHhHHHHhcCCHHHHHHHHHhcC--------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 69999999999 99999999999999999999998753 467999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhcCChhH---------HHHHHHHHhhccCCcccchhhhhhcc
Q 000424 829 FEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPEL---------RRYCERILRVRSTGWTQGIFANFAAE 893 (1525)
Q Consensus 829 ~q~~~d~~~LllLy~~~gd~e~L~kLa~~ae~~g~~~~~---------~~~c~~il~~~~~~~~~~~~a~~~a~ 893 (1525)
|++++||++|+|||+++||+++|+||+++|+++|..+.+ ...|..||...++-.++.+||++|++
T Consensus 370 ~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 370 YQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 999999999999999999999999999999999955443 22788888877777777777777754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=647.00 Aligned_cols=233 Identities=20% Similarity=0.381 Sum_probs=184.4
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCccCCchhh-HHHHHHHHHHhhcCChHHHHHHHHHHHH----HHhc
Q 000424 1268 STQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL----ALAK 1342 (1525)
Q Consensus 1268 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~lk~gy~~~t~gkf~eAl~~Fr~iL~----~~v~ 1342 (1525)
+.+||..++++++.+.+ ++...| .++++++. .++||.|||+||+|||+||+..||+||| ++|+
T Consensus 173 ~~p~l~~~~~r~~~~~~-----------~~~~lP-~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~ 240 (422)
T PF06957_consen 173 SLPPLPSYIRRNWDESN-----------PKNGLP-AIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVE 240 (422)
T ss_dssp TTS-EEEEEBCTTTTSS-----------SCCG-B-B----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BS
T ss_pred CCCCccccccCCccccc-----------cccCCC-cCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec
Confidence 44577888888887732 334566 66777776 7799999999999999999999999999 7899
Q ss_pred CCcchHHHHHHHHHHHHHHHHHchHHHHHHhhccCCCCccccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHhcc
Q 000424 1343 DHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQN 1422 (1525)
Q Consensus 1343 ~~~e~~e~~~li~icreYilal~ll~El~R~~~l~~~~~~~~~~~R~lELaaYfT~c~Lqp~H~~LaLr~Am~~~~K~kN 1422 (1525)
+++|++|++++|+||||||+||+| |++||+ +++ ++ +.++||+||||||||||+|||.|++||||+||+++||+||
T Consensus 241 ~~~E~~e~~eli~icrEYilgl~i--El~Rr~-l~~-~~-~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KN 315 (422)
T PF06957_consen 241 SREEEDEAKELIEICREYILGLSI--ELERRE-LPK-DP-VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKN 315 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH--HHHHCT-S-T-TT-HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh-ccc-cc-hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 999999 743 33 4566799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCC-hhhHHHHHHHHHHHHhcCCCCcccC--CCCCCceeeeccceeccC-CCccccCCCCceecCCC
Q 000424 1423 YAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLCGAKFSALS 1498 (1525)
Q Consensus 1423 y~tAa~fA~rLL~l~p-~~~~~qarkil~~ce~~~~d~~~i~--~~e~pf~iCa~tltpIy~-~~~v~Cp~cgA~y~~~~ 1498 (1525)
|+||++||||||+++| +++++||||||++|||+++|+++|+ ++ +||+||++||||||+ +++|+||||||+|+++|
T Consensus 316 f~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa~~i~yD~~-npF~ICa~s~tPIY~G~~~v~CP~cgA~y~~~~ 394 (422)
T PF06957_consen 316 FITAASFARRLLELNPSPEVAEQARKILQACERNPTDAHEIDYDER-NPFDICAASYTPIYRGSPSVKCPYCGAKYHPEY 394 (422)
T ss_dssp HHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BSS--S--TT-S-EEEBTTT--EEETTS-EEE-TTT--EEEGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCceecCCCCC-CCceeeecccccccCCCCCeeCCCCCCccChhh
Confidence 9999999999999999 9999999999999999999999998 88 999999999999999 99999999999999999
Q ss_pred -CCCCccccceeecCCCCCCCCC
Q 000424 1499 -APGCIICGMGSIKRSDALAGPV 1520 (1525)
Q Consensus 1499 -g~~C~iC~l~~IG~~~~~~~~~ 1520 (1525)
|++|+||+|++||+ |+ .|-+
T Consensus 395 kG~lC~vC~l~~IG~-~a-~GLr 415 (422)
T PF06957_consen 395 KGQLCPVCELSEIGA-DA-SGLR 415 (422)
T ss_dssp TTSB-TTTTTBBTT-----S---
T ss_pred CCCCCCCCcceeeCC-cc-eeeE
Confidence 99999999999999 55 3443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=325.42 Aligned_cols=625 Identities=18% Similarity=0.201 Sum_probs=364.9
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
.=-|++||++|+++.++ +||.+++|+ .++.+.....+.+|++.|++|+|+|+++ .|||+|.|+|||+|.+.+..+.+
T Consensus 100 IR~iavHPt~P~vLtsS-DDm~iKlW~-we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 100 IRSIAVHPTLPYVLTSS-DDMTIKLWD-WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred eeeeeecCCCCeEEecC-CccEEEEee-ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 34689999999998776 699999999 7888988888888999999999999876 79999999999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeC--CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCC
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsP--dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dgt 164 (1525)
||+ |+..|+ ||+|-+ |.++|+||++|.+|+|||++ +++|+++++||.+.|+++.|||..++++|||+|||
T Consensus 178 Tl~gHekGVN-----~Vdyy~~gdkpylIsgaDD~tiKvWDyQ--tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 178 TLEGHEKGVN-----CVDYYTGGDKPYLISGADDLTIKVWDYQ--TKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred eeeccccCcc-----eEEeccCCCcceEEecCCCceEEEeecc--hHHHHHHhhcccccceEEEecCCCcEEEEecCCcc
Confidence 999 999999 999987 55899999999999999999 58888999999999999999999999999999999
Q ss_pred eeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccc
Q 000424 165 LQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAA 244 (1525)
Q Consensus 165 IkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~ 244 (1525)
+|||+..+... ...| .|.+.|+|+++.|++.+.+++.|+.
T Consensus 251 vriWhs~Ty~l---------------------E~tL-------n~gleRvW~I~~~k~~~~i~vG~De------------ 290 (794)
T KOG0276|consen 251 VRIWNSKTYKL---------------------EKTL-------NYGLERVWCIAAHKGDGKIAVGFDE------------ 290 (794)
T ss_pred EEEecCcceeh---------------------hhhh-------hcCCceEEEEeecCCCCeEEEeccC------------
Confidence 99999765442 1122 3667799999999999999988876
Q ss_pred ccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeeeeeccccccc-
Q 000424 245 YTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKS- 323 (1525)
Q Consensus 245 ~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s~~~d~~~k~- 323 (1525)
...+++..++ ++..+|+++|+|. +++...|++. ++|+
T Consensus 291 --------g~i~v~lgre-------eP~vsMd~~gKIi-----------------------wa~~~ei~~~----~~ks~ 328 (794)
T KOG0276|consen 291 --------GSVTVKLGRE-------EPAVSMDSNGKII-----------------------WAVHSEIQAV----NLKSV 328 (794)
T ss_pred --------CcEEEEccCC-------CCceeecCCccEE-----------------------EEcCceeeee----eceec
Confidence 2456777777 8999999999773 1122223221 1111
Q ss_pred ------CccccCcceeeeccccccCCCcccccccccccccccccccccccceeeEE---eCceEEEeecCCCcccccccc
Q 000424 324 ------APISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYV---DGINLVAYNLCSGADSIYRKL 394 (1525)
Q Consensus 324 ------~~~~~~p~~~i~~~~~~~~~~~vv~~~~~e~~~f~~~~~v~~~~~~~~y~---~~~~l~~~~l~~g~~~~~~~L 394 (1525)
.-..++|+.+= +++. | -+|. ..+-|.|+--|.+ +|..|...-|. +
T Consensus 329 ~~~~ev~DgErL~LsvK-----eLgs---~-------eiyP--q~L~hsPNGrfV~VcgdGEyiIyTala---------~ 382 (794)
T KOG0276|consen 329 GAQKEVTDGERLPLSVK-----ELGS---V-------EIYP--QTLAHSPNGRFVVVCGDGEYIIYTALA---------L 382 (794)
T ss_pred cCcccccCCccccchhh-----hccc---c-------ccch--HHhccCCCCcEEEEecCccEEEEEeee---------h
Confidence 11233333321 1111 0 0111 1111222222232 45554422222 3
Q ss_pred ccccCCCeeeccccccccCCccEEEEEeeccCCcceEEEEEecccc-cccccCCCCcccceeEEeCCCCCcEEEEeCCCC
Q 000424 395 YSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDT-QLADSKSSTVKGRDAAFIGPNEDQFAILDDDKT 473 (1525)
Q Consensus 395 ~~~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l-~~rnk~G~~~~g~~~~fig~~~n~yAvle~~~~ 473 (1525)
-.|..|+. +-+.+++.-.-++|-- .++.+.||+-.... .+|.+.+ .+++|.|. -.++..+ .
T Consensus 383 RnK~fG~~----~eFvw~~dsne~avRe----s~~~vki~knfke~ksi~~~~~-----~e~i~gg~---Llg~~ss--~ 444 (794)
T KOG0276|consen 383 RNKAFGSG----LEFVWAADSNEFAVRE----SNGNVKIFKNFKEHKSIRPDMS-----AEGIFGGP---LLGVRSS--D 444 (794)
T ss_pred hhcccccc----eeEEEcCCCCeEEEEe----cCCceEEEecceeccccccccc-----eeeecCCc---eEEEEeC--C
Confidence 34455653 2334455422233332 14566676532222 2333332 67888543 4555544 3
Q ss_pred eEEEEEcCCchhhhhhcccCCcccCCCccccccccccCCcccccccccceeeecCCcceeEEeecCCeEEEEeecccccc
Q 000424 474 GLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRL 553 (1525)
Q Consensus 474 ~v~I~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~~~l~~~~~~~~i~~~~~~~~yd~ 553 (1525)
.+.+|.-..... ++ +++...+.|||...+..|++++..+++.+..|.+.+.-
T Consensus 445 ~~~fydW~~~~l-----------------------Vr-----rI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~ 496 (794)
T KOG0276|consen 445 FLCFYDWESGEL-----------------------VR-----RIEVTSKHVYWSDNGELVAIAGDDSFYILKFNADAVAN 496 (794)
T ss_pred eEEEEEcccceE-----------------------EE-----EEeeccceeEEecCCCEEEEEecCceeEEEecHHHHHH
Confidence 688886431111 11 25567899999988889999999999999877666644
Q ss_pred ccccccccccccccceeeEeeccceEEEEEEcccCC-ccEEEEEeeeeEEEEccchhhhhccccccCCCCCcceeeeeec
Q 000424 554 SARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQR-GYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVG 632 (1525)
Q Consensus 554 ~t~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~-g~~vaI~t~~~i~i~~~~l~~l~~~~~~~~~~~~~IkSg~Wvg 632 (1525)
....+..+...+.. .++|..-++ +|.++ |.-| .+.-||..+ + .. --..+|
T Consensus 497 a~e~g~~v~eeGie------dAfevLgE~--sE~v~tg~Wv---gD~fiytts-~-nr----------------lnY~vg 547 (794)
T KOG0276|consen 497 AVEQGIEVTEEGIE------DAFEVLGEV--SESVKTGKWV---GDCFIYTTS-N-NR----------------LNYLVG 547 (794)
T ss_pred HHhcCCCCcchhHH------HHHHHHhhh--hhheeeceee---eeEEEEeec-c-cc----------------eeEEcC
Confidence 44433333222111 233332222 22211 1112 222222211 1 11 111233
Q ss_pred CEEEEEc-ccccEEEeeCCceee-EEEecCCceEEEEEecCcEEEecCCCCCcccCCceeEEeeec-cchhhHHHhhhhh
Q 000424 633 PALLFST-ATAISVLGWDGKVRN-ILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLV-GLLEPLLIGFATM 709 (1525)
Q Consensus 633 ~~fIYtT-~t~l~Yl~~~G~~~~-I~~l~~~~~yLlgyl~~Rl~l~~~~~~~p~~dk~~~I~s~~l-~llE~ll~g~a~~ 709 (1525)
+=-.+.- ....+||++.=.... ++-.|. .+-..+|--+-=++-+++.. .+.+++.-...| .+-+...- .+
T Consensus 548 Ge~~~v~h~~~~mylLgy~~~~~rvYL~Dk-e~nVi~y~l~l~vleyqt~v---mrrd~~~a~~vLp~I~k~~rt---~v 620 (794)
T KOG0276|consen 548 GETYTVAHLDRIMYLLGYVANDNRVYLHDK-ELNVISYKILLEVLEYQTLV---LRRDLEVADGVLPTIPKEIRT---KV 620 (794)
T ss_pred CceEEEEEeccchhheeeeecCCEEEEeec-ccceEeEeeehHHHHHHHHh---hhccccccccccccCchhhhh---hH
Confidence 2221111 112556552200000 111111 11112221000000011000 011111100000 00000000 01
Q ss_pred hHHHHHhhhHHHHHHHHHhccCCCCCChhHHHHHHcCCCCcccchhhccccCCCCCcchh----hhHHhhcCCHHHHHHH
Q 000424 710 QQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLR----GIYAIKALRFSTALSV 785 (1525)
Q Consensus 710 ~~~~~~t~~lr~~l~~~~~~~~s~~i~~~~l~~L~~~~~~~~elAl~ls~~~~~~d~~~r----F~LAl~lg~l~~A~~i 785 (1525)
..+|+ + +|.-+++++.- .++..+=-|+.+ .|..++|.++++. .+.+.| -++|++.|+|..|.|.
T Consensus 621 a~Fle-~---~g~~e~AL~~s----~D~d~rFelal~-lgrl~iA~~la~e---~~s~~Kw~~Lg~~al~~~~l~lA~EC 688 (794)
T KOG0276|consen 621 AHFLE-S---QGMKEQALELS----TDPDQRFELALK-LGRLDIAFDLAVE---ANSEVKWRQLGDAALSAGELPLASEC 688 (794)
T ss_pred HhHhh-h---ccchHhhhhcC----CChhhhhhhhhh-cCcHHHHHHHHHh---hcchHHHHHHHHHHhhcccchhHHHH
Confidence 11121 1 12223343311 223332233332 3478999998873 244444 5899999999999998
Q ss_pred HHHhhcccCCCCCCC--CC-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhhhHHHHHHHHhCCH
Q 000424 786 LKDEFLRSRDYPKCP--PT-SQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNP 848 (1525)
Q Consensus 786 a~~~~~~~~d~~~~~--~~-~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~d~~~LllLy~~~gd~ 848 (1525)
+.. ++|+-..= .+ +...+--..||..|-++|.+++|--||-..+|++.-+-|.++|+..
T Consensus 689 ~~~----a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 689 FLR----ARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRL 750 (794)
T ss_pred HHh----hcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcC
Confidence 754 34543100 00 1112224569999999999999999999999999999999888753
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=244.00 Aligned_cols=241 Identities=17% Similarity=0.257 Sum_probs=191.2
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
-++|||++|.. ++..+|-.|++|+ ....++.+.+.+ |-+.|+.+.||+.-++++|+|+|.|||||+.++.+++..+.
T Consensus 56 gv~FH~~qplF-VSGGDDykIkVWn-Yk~rrclftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 56 GVDFHPTQPLF-VSGGDDYKIKVWN-YKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred eeeecCCCCeE-EecCCccEEEEEe-cccceehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 38999999975 5556799999999 566778888887 99999999999999999999999999999999999999999
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC------Cc---------------------eeeEeecccCc
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE------RP---------------------SMIGIIQVGSQ 142 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~------~~---------------------s~i~il~gH~~ 142 (1525)
|..+|+ |-+|||....++|+|-|.||||||+..- .. .+..+++||..
T Consensus 133 GHnHYVM-----cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR 207 (1202)
T KOG0292|consen 133 GHNHYVM-----CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR 207 (1202)
T ss_pred cCceEEE-----eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence 999999 9999999999999999999999998631 00 01135789999
Q ss_pred CeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecC
Q 000424 143 PITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPR 222 (1525)
Q Consensus 143 ~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~ 222 (1525)
.|+-++|||..++|+||++|..|++|.++...- |+ +| ...++ ..+|.++.|||.
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa----------WE------vD---tcrgH-------~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA----------WE------VD---TCRGH-------YNNVSSVLFHPH 261 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccccc----------ee------eh---hhhcc-------cCCcceEEecCc
Confidence 999999999999999999999999998763211 11 11 11111 136889999999
Q ss_pred CCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCc--ccc--hhhHHHHHHHhhhccCC
Q 000424 223 LNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSS--GIL--ADHQLQAQLQEHHLKGH 298 (1525)
Q Consensus 223 ~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~--g~l--~~~ql~~~~~~~~~~~~ 298 (1525)
.|++. +.++|+.+++|.+... ..+.++|-.+ +|||.+... +.+ ++| |
T Consensus 262 q~lIl------SnsEDksirVwDm~kR--t~v~tfrren--------dRFW~laahP~lNLfAAgH-------------D 312 (1202)
T KOG0292|consen 262 QDLIL------SNSEDKSIRVWDMTKR--TSVQTFRREN--------DRFWILAAHPELNLFAAGH-------------D 312 (1202)
T ss_pred cceeE------ecCCCccEEEEecccc--cceeeeeccC--------CeEEEEEecCCcceeeeec-------------C
Confidence 99988 9999999999987543 2233444322 577877763 222 555 7
Q ss_pred Cceeeehhhhhceeee
Q 000424 299 SHLTISDIARKAFLYS 314 (1525)
Q Consensus 299 ~~~~I~di~r~~~i~s 314 (1525)
+++.|.++-|..++|-
T Consensus 313 sGm~VFkleRErpa~~ 328 (1202)
T KOG0292|consen 313 SGMIVFKLERERPAYA 328 (1202)
T ss_pred CceEEEEEcccCceEE
Confidence 7777877777766654
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=236.15 Aligned_cols=268 Identities=16% Similarity=0.202 Sum_probs=200.2
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE-
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH- 86 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l- 86 (1525)
.-+-++|+|++..+..|+ .|.++.+|| .+...+.+..++ |+..|.+++|+|||..+|+||.||+|++||.++++++
T Consensus 117 ~Vl~~~fsp~g~~l~tGs-GD~TvR~WD-~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGS-GDTTVRLWD-LDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred cEEEEEecCCCceEEecC-CCceEEeec-cCCCCcceeecC-CccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence 456778999999887666 699999999 455667777777 9999999999999999999999999999999988765
Q ss_pred EEEe-cCCceeecCceeEEEeC-----CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHP-----TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsP-----dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
..|. |...|+ +++|.| ..++++++|.||+|+|||+. ...++..+.+|+.+|+|+.|--+| +|.|||
T Consensus 194 ~~l~gH~K~It-----~Lawep~hl~p~~r~las~skDg~vrIWd~~--~~~~~~~lsgHT~~VTCvrwGG~g-liySgS 265 (480)
T KOG0271|consen 194 RALRGHKKWIT-----ALAWEPLHLVPPCRRLASSSKDGSVRIWDTK--LGTCVRTLSGHTASVTCVRWGGEG-LIYSGS 265 (480)
T ss_pred ccccCccccee-----EEeecccccCCCccceecccCCCCEEEEEcc--CceEEEEeccCccceEEEEEcCCc-eEEecC
Confidence 6677 999999 999976 56799999999999999999 455666688999999999997654 899999
Q ss_pred CCCCeeEEEeee-----ecCCCC-----------CCCccccccCCCcc-------------------cccccccccccCC
Q 000424 161 RDGSLQVWKTRV-----IINPNR-----------PPMQANFFEPASIE-------------------SIDIPRILSQQGG 205 (1525)
Q Consensus 161 ~DgtIkIWDlr~-----~~~p~~-----------~~~~a~~f~p~~Ie-------------------sldi~~iLs~~gG 205 (1525)
.|++|++|+... .+..+. ..+....|++.+-. .-...+.++.+.+
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999999999861 111111 11112223332210 0001123333333
Q ss_pred cceecC----------------CCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccchh
Q 000424 206 EAVYPL----------------PRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLK 269 (1525)
Q Consensus 206 ~~vy~l----------------~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~ 269 (1525)
...+-. .-|+.+.|.|++-++| +++=|+.+|.|..++| +...++|||-+.+|-+
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA------SaSFDkSVkLW~g~tG--k~lasfRGHv~~VYqv-- 415 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA------SASFDKSVKLWDGRTG--KFLASFRGHVAAVYQV-- 415 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEE------EeecccceeeeeCCCc--chhhhhhhccceeEEE--
Confidence 332221 2388999999999998 8999999999999988 4667999999999875
Q ss_pred hhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhc
Q 000424 270 EKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKA 310 (1525)
Q Consensus 270 e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~ 310 (1525)
.|+-++--++... .|.++.|||+..+.
T Consensus 416 --awsaDsRLlVS~S------------kDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 416 --AWSADSRLLVSGS------------KDSTLKVWDVRTKK 442 (480)
T ss_pred --EeccCccEEEEcC------------CCceEEEEEeeeee
Confidence 3444442222322 68899999965553
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-23 Score=234.02 Aligned_cols=212 Identities=18% Similarity=0.160 Sum_probs=172.6
Q ss_pred EEEEEcCC-CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 10 VHLALTPL-QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 10 ~hLA~hP~-~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
.-+.|||. ...-+.++.-|.++++|.. +...+.-.+.+ |...|..++|||+|++|+|+|.|.+-|+||+.++..+.-
T Consensus 221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~-~~e~~l~~l~g-H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~ 298 (459)
T KOG0272|consen 221 GAAVFHPVDSDLNLATASADGTVKLWKL-SQETPLQDLEG-HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL 298 (459)
T ss_pred eeEEEccCCCccceeeeccCCceeeecc-CCCcchhhhhc-chhhheeeeecCCCceeeecccccchhhcccccchhhHh
Confidence 45789998 4655666667999999985 44445555555 999999999999999999999999999999999988887
Q ss_pred Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeE
Q 000424 89 LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV 167 (1525)
Q Consensus 89 L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkI 167 (1525)
.+ |...|. +++|++||..++|||.|..-||||+++...-+ ++.+|...|.+|+|+|+|..|+|||.|++++|
T Consensus 299 QEGHs~~v~-----~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im--~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 299 QEGHSKGVF-----SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM--FLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred hcccccccc-----eeEecCCCceeeccCccchhheeecccCcEEE--EecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 78 999999 99999999999999999999999999754444 58999999999999999999999999999999
Q ss_pred EEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEec-CCCeEEEEecccccCCccccccccc
Q 000424 168 WKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHP-RLNLAVLLFANFTGGDNIKNRAAYT 246 (1525)
Q Consensus 168 WDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP-~~Nlial~F~~~s~~Dd~~~k~~~~ 246 (1525)
||+|...+-+. .| .+. .-|..|.|.| .+.+++ +++=|.+.++|..
T Consensus 372 WDLR~r~~ly~--------ip-------------AH~-------nlVS~Vk~~p~~g~fL~------TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 372 WDLRMRSELYT--------IP-------------AHS-------NLVSQVKYSPQEGYFLV------TASYDNTVKIWST 417 (459)
T ss_pred eeeccccccee--------cc-------------ccc-------chhhheEecccCCeEEE------EcccCcceeeecC
Confidence 99984322110 11 000 1255678887 466665 7788888898986
Q ss_pred ccCceeeeeeeccccCCccc
Q 000424 247 REGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 247 ~eg~~q~~~tlq~~~~~~~s 266 (1525)
++ +++..+|.||.+-+.|
T Consensus 418 ~~--~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 418 RT--WSPLKSLAGHEGKVIS 435 (459)
T ss_pred CC--cccchhhcCCccceEE
Confidence 65 5788999999997644
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=220.45 Aligned_cols=173 Identities=20% Similarity=0.301 Sum_probs=144.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
+|.++|.+++|+|++..|++|+.|.|+|+||+.+..++++.+ |.+.|. ||+|+|||++|++|+.||+|++||-.
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVl-----cvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVL-----CVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEE-----EEEECCCcchhhccccCCeEEEecCC
Confidence 499999999999999999999999999999999999999999 999999 99999999999999999999999988
Q ss_pred CCCceeeEeecccCcCeEEEEEcC-----CCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccc
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLP-----MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ 202 (1525)
Q Consensus 128 t~~~s~i~il~gH~~~VtsIafsP-----dg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~ 202 (1525)
+. ..+...+.+|...|++++|+| ..++|+|+|.||+|+|||+..-.. -..+++
T Consensus 188 tg-~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---------------------~~~lsg 245 (480)
T KOG0271|consen 188 TG-QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---------------------VRTLSG 245 (480)
T ss_pred CC-CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE---------------------EEEecc
Confidence 64 333445779999999999987 567999999999999999862110 001222
Q ss_pred cCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCc
Q 000424 203 QGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 203 ~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~ 264 (1525)
+. ..|+|+.|- ..+++. +++.|.++|.|+..+|+ +..+|+||..-+
T Consensus 246 HT-------~~VTCvrwG-G~gliy------SgS~DrtIkvw~a~dG~--~~r~lkGHahwv 291 (480)
T KOG0271|consen 246 HT-------ASVTCVRWG-GEGLIY------SGSQDRTIKVWRALDGK--LCRELKGHAHWV 291 (480)
T ss_pred Cc-------cceEEEEEc-CCceEE------ecCCCceEEEEEccchh--HHHhhcccchhe
Confidence 11 247788886 346666 89999999999988864 667889988754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=220.02 Aligned_cols=206 Identities=22% Similarity=0.273 Sum_probs=174.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCC--CCEEEEEeCCCcEEEEeC
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPT--LEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPd--g~~LaSgS~DgtIrVWDv 126 (1525)
-+.||..+.|++++..|+|||.+|.+++|+..+...+.+|. |...|. ++.|||. +..++||+.||++++|++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~-----~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVG-----AAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccccee-----eEEEccCCCccceeeeccCCceeeecc
Confidence 57899999999999999999999999999999999999999 999999 9999996 568999999999999999
Q ss_pred CCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCc
Q 000424 127 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGE 206 (1525)
Q Consensus 127 ~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~ 206 (1525)
++ ...++.+.+|...|..++|||+|++|+|+|-|.+-++||+++... .|.+ .|.
T Consensus 249 ~~--e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-----------------------lL~Q-EGH 302 (459)
T KOG0272|consen 249 SQ--ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-----------------------LLLQ-EGH 302 (459)
T ss_pred CC--CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-----------------------hHhh-ccc
Confidence 94 345566779999999999999999999999999999999985332 1111 121
Q ss_pred ceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHH
Q 000424 207 AVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQL 286 (1525)
Q Consensus 207 ~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql 286 (1525)
. ..|-+++|||++.+++ ++|-|..-++|..|.|+..+ +|.+|...+++| .+.+-|. +
T Consensus 303 s----~~v~~iaf~~DGSL~~------tGGlD~~~RvWDlRtgr~im--~L~gH~k~I~~V---~fsPNGy-------~- 359 (459)
T KOG0272|consen 303 S----KGVFSIAFQPDGSLAA------TGGLDSLGRVWDLRTGRCIM--FLAGHIKEILSV---AFSPNGY-------H- 359 (459)
T ss_pred c----cccceeEecCCCceee------ccCccchhheeecccCcEEE--EecccccceeeE---eECCCce-------E-
Confidence 1 2567899999999999 99999999999999999887 599999988774 3444343 1
Q ss_pred HHHHHhhhccCCCceeeehhhhhceeee
Q 000424 287 QAQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 287 ~~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
.+.-++|++.+|||+-++.++|+
T Consensus 360 -----lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 360 -----LATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred -----EeecCCCCcEEEeeeccccccee
Confidence 12234899999999999999988
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=206.78 Aligned_cols=243 Identities=17% Similarity=0.188 Sum_probs=188.7
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecC----CccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEG----GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~----gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
.-|+..+.++-++.++++|.++.+|..... |.+...+++ |++.|..+++++++++.++++.|+++|+||+.+++.
T Consensus 19 t~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~ 97 (315)
T KOG0279|consen 19 TALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES 97 (315)
T ss_pred EEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccccceEEEEEecCCcE
Confidence 357777889999999999999999976433 455666666 999999999999999999999999999999999999
Q ss_pred EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC--CCEEEEEECC
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM--LRLLVTLCRD 162 (1525)
Q Consensus 86 l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd--g~lLaSgS~D 162 (1525)
.+.|. |...|. +|+|++|.+.|+|||.|++|++||+-.. ..+...-..|...|+|+.|+|+ .++|+++|.|
T Consensus 98 t~~f~GH~~dVl-----sva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 98 TRRFVGHTKDVL-----SVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred EEEEEecCCceE-----EEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 99999 999999 9999999999999999999999999843 2222111234789999999998 7899999999
Q ss_pred CCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccc
Q 000424 163 GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNR 242 (1525)
Q Consensus 163 gtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k 242 (1525)
++||+||++..... .++ .++. . -++.+++.|++.+.+ +++.|.+..
T Consensus 172 ktvKvWnl~~~~l~------~~~---------------~gh~---~----~v~t~~vSpDGslca------sGgkdg~~~ 217 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLR------TTF---------------IGHS---G----YVNTVTVSPDGSLCA------SGGKDGEAM 217 (315)
T ss_pred ceEEEEccCCcchh------hcc---------------cccc---c----cEEEEEECCCCCEEe------cCCCCceEE
Confidence 99999999843221 011 1111 1 378899999999998 899999999
Q ss_pred ccccccCceeeeeeeccccCCcccchhhhcccCCCcc--cchhhHHHHHHHhhhccCCCceeeehhhhhceeeee
Q 000424 243 AAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSG--ILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 315 (1525)
Q Consensus 243 ~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g--~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s~ 315 (1525)
.|+.++|+. + +++ .|...+.++. ++++- +.+. -+..+.|||+-.+..|.+.
T Consensus 218 LwdL~~~k~-l-ysl-~a~~~v~sl~------fspnrywL~~a-------------t~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 218 LWDLNEGKN-L-YSL-EAFDIVNSLC------FSPNRYWLCAA-------------TATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EEEccCCce-e-Eec-cCCCeEeeEE------ecCCceeEeec-------------cCCceEEEeccchhhhhhc
Confidence 999999976 2 233 4455443321 12211 0111 3667999998888777663
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=202.81 Aligned_cols=183 Identities=16% Similarity=0.263 Sum_probs=154.3
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCC---CcEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEE
Q 000424 49 DLKKPIVNLACHPR-LPVLYVAYADGLIRAYNIHT---YAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 122 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~-g~~LaSGs~DgtIrIWDi~t---~k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIr 122 (1525)
+|+++|.+++|||. |..||+|+.|+.||||+... ..+...+. |...|+ +|+|+|.|++|+++|.|.++.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-----svAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-----SVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-----eeeecCCCcEEEEeeccceEE
Confidence 39999999999998 88999999999999999874 56777777 999999 999999999999999999999
Q ss_pred EEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccc
Q 000424 123 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ 202 (1525)
Q Consensus 123 VWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~ 202 (1525)
||.-......++.+++||...|.|++|+++|.+|||||.|++|.||.+. +.+.. +...+|..
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d---------------eddEf---ec~aVL~~ 148 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID---------------EDDEF---ECIAVLQE 148 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec---------------CCCcE---EEEeeecc
Confidence 9965544577788999999999999999999999999999999999875 11111 12223332
Q ss_pred cCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccc-cCceeeeeeeccccCCcccc
Q 000424 203 QGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTR-EGRKQLFAVLQSARGSSASV 267 (1525)
Q Consensus 203 ~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~-eg~~q~~~tlq~~~~~~~s~ 267 (1525)
+. ..|+.+.|||+..+++ +++=|.++|.|+.. ++.+++.++|.+|.+.+.++
T Consensus 149 Ht-------qDVK~V~WHPt~dlL~------S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~ 201 (312)
T KOG0645|consen 149 HT-------QDVKHVIWHPTEDLLF------SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL 201 (312)
T ss_pred cc-------ccccEEEEcCCcceeE------EeccCCeEEEEeecCCCCeeEEEEecCccceEEEE
Confidence 22 3588899999999887 77778888888877 78999999999999977554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=215.30 Aligned_cols=160 Identities=19% Similarity=0.275 Sum_probs=135.2
Q ss_pred ccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 000424 4 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 83 (1525)
Q Consensus 4 ~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~ 83 (1525)
||....--++|+-++.|+.+++.+-.-+.+|..... .-+.+.. +|...+.+++++|||.++|+|+.||+|||||..++
T Consensus 305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred cccceeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 555566778899999999999877556667764332 2222323 49999999999999999999999999999999999
Q ss_pred cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC------------ce------------------
Q 000424 84 AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER------------PS------------------ 132 (1525)
Q Consensus 84 k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~------------~s------------------ 132 (1525)
-|+.||. |...|+ .++|+.+|+.++|.|.||+||.||+..++ ..
T Consensus 383 fC~vTFteHts~Vt-----~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVT-----AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred eEEEEeccCCCceE-----EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 9999999 999999 99999999999999999999999986420 01
Q ss_pred ------------eeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 133 ------------MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 133 ------------~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
..-++.||.++|.+++|+|++..|+|+|.|.|||+||+
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 11236799999999999999999999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=195.36 Aligned_cols=205 Identities=18% Similarity=0.242 Sum_probs=168.3
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCC--ccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--C
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG--RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH--T 82 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g--k~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~--t 82 (1525)
|++-.+|+||..-.+|.++..++.|++|++.++. .+.+.+...|+..|++++|+|.|++|++||.|.++-||.-. .
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 4678899999866678888899999999986522 23445556799999999999999999999999999999754 4
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC-CCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t-~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
++++.+++ |++.|. ||+|+++|++|+++|+|++|-||.+.. ....++++++.|++.|..+.|||...+|+|+|
T Consensus 95 fecv~~lEGHEnEVK-----~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 95 FECVATLEGHENEVK-----CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred eeEEeeeecccccee-----EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 58999999 999999 999999999999999999999998874 25677788999999999999999999999999
Q ss_pred CCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccc
Q 000424 161 RDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIK 240 (1525)
Q Consensus 161 ~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~ 240 (1525)
-|.|||+|+-.. .+ .++....|..+.+ .|+.++|||.++-++ +++||..
T Consensus 170 YDnTIk~~~~~~---------------dd---dW~c~~tl~g~~~-------TVW~~~F~~~G~rl~------s~sdD~t 218 (312)
T KOG0645|consen 170 YDNTIKVYRDED---------------DD---DWECVQTLDGHEN-------TVWSLAFDNIGSRLV------SCSDDGT 218 (312)
T ss_pred cCCeEEEEeecC---------------CC---CeeEEEEecCccc-------eEEEEEecCCCceEE------EecCCcc
Confidence 999999997421 00 1111112222221 578999999987776 8899999
Q ss_pred ccccccc
Q 000424 241 NRAAYTR 247 (1525)
Q Consensus 241 ~k~~~~~ 247 (1525)
+++|+.+
T Consensus 219 v~Iw~~~ 225 (312)
T KOG0645|consen 219 VSIWRLY 225 (312)
T ss_pred eEeeeec
Confidence 9999855
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-20 Score=223.79 Aligned_cols=203 Identities=15% Similarity=0.202 Sum_probs=166.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeC
Q 000424 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 48 ~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv 126 (1525)
.+|++||.++.|+|+.++|+++|.|++||+|++.+..++..++ |..+|. +|.|+|.|-|++|+|.|++-++|..
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVw-----dV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVW-----DVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCccee-----eEEecCCceEEEecCCCceeeeeec
Confidence 4599999999999999999999999999999999999999999 999999 9999999999999999999999988
Q ss_pred CCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCc
Q 000424 127 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGE 206 (1525)
Q Consensus 127 ~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~ 206 (1525)
... ....++.+|.+.|.|+.|||+..|++|||.|.+||+||+.+-.. . ++..++-
T Consensus 523 d~~--~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-------V--------------RiF~GH~-- 577 (707)
T KOG0263|consen 523 DHN--KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-------V--------------RIFTGHK-- 577 (707)
T ss_pred ccC--CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-------E--------------EEecCCC--
Confidence 742 22234569999999999999999999999999999999862110 0 1112221
Q ss_pred ceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHH
Q 000424 207 AVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQL 286 (1525)
Q Consensus 207 ~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql 286 (1525)
.+|..++|.|.+-.++ ++++|..+++|+...|+ ++..+++|.+..+|+.+ +.+.+..+.+.
T Consensus 578 -----~~V~al~~Sp~Gr~La------Sg~ed~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsF----S~dg~vLasgg-- 638 (707)
T KOG0263|consen 578 -----GPVTALAFSPCGRYLA------SGDEDGLIKIWDLANGS--LVKQLKGHTGTIYSLSF----SRDGNVLASGG-- 638 (707)
T ss_pred -----CceEEEEEcCCCceEe------ecccCCcEEEEEcCCCc--chhhhhcccCceeEEEE----ecCCCEEEecC--
Confidence 2578899999888888 99999999999988774 56689999998888532 22222233555
Q ss_pred HHHHHhhhccCCCceeeehhhhh
Q 000424 287 QAQLQEHHLKGHSHLTISDIARK 309 (1525)
Q Consensus 287 ~~~~~~~~~~~~~~~~I~di~r~ 309 (1525)
.|+.+++||+-+.
T Consensus 639 ----------~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 639 ----------ADNSVRLWDLTKV 651 (707)
T ss_pred ----------CCCeEEEEEchhh
Confidence 6999999996654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-19 Score=215.21 Aligned_cols=251 Identities=17% Similarity=0.214 Sum_probs=186.7
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCc--cceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCc
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI-HTYA 84 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk--~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi-~t~k 84 (1525)
.-.-+.|||++..+ ++...++.+.+|+. +..+ ....+ .+|...|+.++|+|++.++++|+.|++|||||+ ..+.
T Consensus 161 sv~~~~fs~~g~~l-~~~~~~~~i~~~~~-~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 161 SVTCVDFSPDGRAL-AAASSDGLIRIWKL-EGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ceEEEEEcCCCCeE-EEccCCCcEEEeec-ccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 34458999999995 45546888888887 3333 23333 459999999999999999999999999999999 5668
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCC
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dg 163 (1525)
+++++. |...|+ +++|+|+++.+++|+.|++|+|||+++ ..+...+.+|.+.|++++|++++.+|+++|.|+
T Consensus 238 ~~~~l~gH~~~v~-----~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 238 NLKTLKGHSTYVT-----SVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred EEEEecCCCCceE-----EEEecCCCCEEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 999999 999999 999999999999999999999999995 566677889999999999999999999999999
Q ss_pred CeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccc
Q 000424 164 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRA 243 (1525)
Q Consensus 164 tIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~ 243 (1525)
.|++||+...... ....+.... .+. .++.+.|||++..+. ++.+|...+.
T Consensus 311 ~i~vwd~~~~~~~-------------------~~~~~~~~~----~~~-~~~~~~fsp~~~~ll------~~~~d~~~~~ 360 (456)
T KOG0266|consen 311 TIRVWDLETGSKL-------------------CLKLLSGAE----NSA-PVTSVQFSPNGKYLL------SASLDRTLKL 360 (456)
T ss_pred cEEEEECCCCcee-------------------eeecccCCC----CCC-ceeEEEECCCCcEEE------EecCCCeEEE
Confidence 9999998743210 000111111 111 468899999999887 7888999999
Q ss_pred cccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceee
Q 000424 244 AYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLY 313 (1525)
Q Consensus 244 ~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~ 313 (1525)
|..+.++ ...++.+|.+..++. ......-+...++.++ ++..+.+||+.....++
T Consensus 361 w~l~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~i~sg~------------~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 361 WDLRSGK--SVGTYTGHSNLVRCI-FSPTLSTGGKLIYSGS------------EDGSVYVWDSSSGGILQ 415 (456)
T ss_pred EEccCCc--ceeeecccCCcceeE-ecccccCCCCeEEEEe------------CCceEEEEeCCccchhh
Confidence 9887663 445677887753222 1111111222223333 57777777766544443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=197.44 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=144.1
Q ss_pred EccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEE
Q 000424 46 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 124 (1525)
Q Consensus 46 ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVW 124 (1525)
+..+|.+.|+++++.|...+|++|+.|++|+|||+.+++...++. |-..|+ .|++|+..+|++|++.|+.|++|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-----~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-----GVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-----eeeecccCceEEEecCCCeeEEE
Confidence 334699999999999999999999999999999999999999999 999999 99999999999999999999999
Q ss_pred eCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccC
Q 000424 125 DVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQG 204 (1525)
Q Consensus 125 Dv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~g 204 (1525)
|+. ...++..+.||.+.|.|++.||..+.|+||+.|.++||||+|+..+. .+|.++.
T Consensus 221 DLe--~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V---------------------~~l~GH~ 277 (460)
T KOG0285|consen 221 DLE--YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV---------------------HVLSGHT 277 (460)
T ss_pred ech--hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE---------------------EEecCCC
Confidence 999 46666667799999999999999999999999999999999954320 0122211
Q ss_pred CcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCc
Q 000424 205 GEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 205 G~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~ 264 (1525)
..|..|.+.|...-+. +++-|..++.|..+.|+.-. ++--|.-.+
T Consensus 278 -------~~V~~V~~~~~dpqvi------t~S~D~tvrlWDl~agkt~~--tlt~hkksv 322 (460)
T KOG0285|consen 278 -------NPVASVMCQPTDPQVI------TGSHDSTVRLWDLRAGKTMI--TLTHHKKSV 322 (460)
T ss_pred -------CcceeEEeecCCCceE------EecCCceEEEeeeccCceeE--eeeccccee
Confidence 1244455555444443 78899999999999986443 555555544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-19 Score=217.50 Aligned_cols=196 Identities=18% Similarity=0.199 Sum_probs=162.1
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
.=|-.+|+|+..+++.++ .|.++.+|.. +.- ....+..+|..||..+.|+|.|-+||||+.|++-++|......+++
T Consensus 453 PVyg~sFsPd~rfLlScS-ED~svRLWsl-~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCS-EDSSVRLWSL-DTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred ceeeeeecccccceeecc-CCcceeeeec-ccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 346689999999986655 6999999984 333 3334444699999999999999999999999999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
.+. |.+.|. |+.|||+..|+++||.|++||+||+.+ ...+.+++||..+|.+++|+|+|++|+||+.|+.|+
T Consensus 530 ifaghlsDV~-----cv~FHPNs~Y~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 530 IFAGHLSDVD-----CVSFHPNSNYVATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred hhcccccccc-----eEEECCcccccccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 999 999999 999999999999999999999999995 455677899999999999999999999999999999
Q ss_pred EEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccccc
Q 000424 167 VWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYT 246 (1525)
Q Consensus 167 IWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~ 246 (1525)
+||+..-.. .. .+-.+. ..|..+.|...+++++ +++-|..++.|..
T Consensus 603 iWDl~~~~~------v~---------------~l~~Ht-------~ti~SlsFS~dg~vLa------sgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 603 IWDLANGSL------VK---------------QLKGHT-------GTIYSLSFSRDGNVLA------SGGADNSVRLWDL 648 (707)
T ss_pred EEEcCCCcc------hh---------------hhhccc-------CceeEEEEecCCCEEE------ecCCCCeEEEEEc
Confidence 999863110 00 011111 1356789999999988 7788888888864
Q ss_pred c
Q 000424 247 R 247 (1525)
Q Consensus 247 ~ 247 (1525)
.
T Consensus 649 ~ 649 (707)
T KOG0263|consen 649 T 649 (707)
T ss_pred h
Confidence 3
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=206.99 Aligned_cols=157 Identities=20% Similarity=0.335 Sum_probs=138.2
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
+..-++|+|++.+++ ++..|+++++|+..+.++....+++ |...|++++|+|+++++++|+.|++|||||+++++++.
T Consensus 205 ~v~~~~fs~d~~~l~-s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLL-SGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred ceeeeEECCCCcEEE-EecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence 456789999998665 4557999999997566677777776 99999999999999999999999999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcC--eEEEEEcCCCCEEEEEECCCC
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQP--ITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~--VtsIafsPdg~lLaSgS~Dgt 164 (1525)
.+. |.+.|+ +++|++++.+|++++.|+.|+|||+.++...+...+.+|... ++++.|||++.++++++.|++
T Consensus 283 ~l~~hs~~is-----~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 283 KLKGHSDGIS-----GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred eeeccCCceE-----EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 999 999999 999999999999999999999999997532133344566555 999999999999999999999
Q ss_pred eeEEEee
Q 000424 165 LQVWKTR 171 (1525)
Q Consensus 165 IkIWDlr 171 (1525)
+++||++
T Consensus 358 ~~~w~l~ 364 (456)
T KOG0266|consen 358 LKLWDLR 364 (456)
T ss_pred EEEEEcc
Confidence 9999998
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-18 Score=187.73 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=171.0
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEee----cCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTV----EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtv----e~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
.-||+|.+.+|.+|. -+..+.+++.- ++...+.....+|++.+.++.|-+ +..+++++.|.+.-+||+.+++.+
T Consensus 102 tCA~sPSg~~VAcGG-LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 102 TCAYSPSGNFVACGG-LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred EEEECCCCCeEEecC-cCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE
Confidence 358999999988776 46677777653 233344444556999999999987 667899999999999999999999
Q ss_pred EEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCC
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dgt 164 (1525)
..|. |...|. +++++| ++++++||+.|++.++||++. ..+++.+.+|...|++|.|+|+|.-|+|||+|++
T Consensus 180 ~~f~GH~gDV~-----slsl~p~~~ntFvSg~cD~~aklWD~R~--~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 180 QVFHGHTGDVM-----SLSLSPSDGNTFVSGGCDKSAKLWDVRS--GQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred EEecCCcccEE-----EEecCCCCCCeEEecccccceeeeeccC--cceeEeecccccccceEEEccCCCeeeecCCCce
Confidence 9999 999999 999999 999999999999999999995 5666778899999999999999999999999999
Q ss_pred eeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccc
Q 000424 165 LQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAA 244 (1525)
Q Consensus 165 IkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~ 244 (1525)
+|+||+|.-.. . ..|++.. ..-+|+.++|.-++.+.. .+.+|....+|
T Consensus 253 cRlyDlRaD~~------~-a~ys~~~-------------------~~~gitSv~FS~SGRlLf------agy~d~~c~vW 300 (343)
T KOG0286|consen 253 CRLYDLRADQE------L-AVYSHDS-------------------IICGITSVAFSKSGRLLF------AGYDDFTCNVW 300 (343)
T ss_pred eEEEeecCCcE------E-eeeccCc-------------------ccCCceeEEEcccccEEE------eeecCCceeEe
Confidence 99999984211 0 0111100 012578899998888766 56777788889
Q ss_pred ccccCceeeeeeeccccCCccc
Q 000424 245 YTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 245 ~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
..-.|+... +|-||.+-+.+
T Consensus 301 Dtlk~e~vg--~L~GHeNRvSc 320 (343)
T KOG0286|consen 301 DTLKGERVG--VLAGHENRVSC 320 (343)
T ss_pred eccccceEE--EeeccCCeeEE
Confidence 888776544 68899997755
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=187.31 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=155.3
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ- 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~- 90 (1525)
+++++++.+.|.++ .|..+.+||.. .+.+...+ .+|..-|.+++|+|+.+.+++|+.|.+|++||+.. .+.+++.
T Consensus 69 v~~s~dg~~alS~s-wD~~lrlWDl~-~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~ 144 (315)
T KOG0279|consen 69 VVLSSDGNFALSAS-WDGTLRLWDLA-TGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHE 144 (315)
T ss_pred eEEccCCceEEecc-ccceEEEEEec-CCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEec
Confidence 67889998876665 68999999964 44444444 45999999999999999999999999999999864 5667776
Q ss_pred --cCCceeecCceeEEEeCC--CCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 91 --LDNTIKLLGAGAFAFHPT--LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 91 --H~~~V~~~g~~sVaFsPd--g~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
|.+.|+ ||+|+|. ..+|+++|.|++||+||+++ .++...+-+|+++|+.+.++|||.++++|+.||.+.
T Consensus 145 ~~~~~WVs-----cvrfsP~~~~p~Ivs~s~DktvKvWnl~~--~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 145 DSHREWVS-----CVRFSPNESNPIIVSASWDKTVKVWNLRN--CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred CCCcCcEE-----EEEEcCCCCCcEEEEccCCceEEEEccCC--cchhhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 478999 9999997 78999999999999999995 333333449999999999999999999999999999
Q ss_pred EEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccccc
Q 000424 167 VWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYT 246 (1525)
Q Consensus 167 IWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~ 246 (1525)
+||++...+ +.+++ . ...|+.+.|.|+...++.. -+..+|+|..
T Consensus 218 LwdL~~~k~---------------lysl~------a--------~~~v~sl~fspnrywL~~a-------t~~sIkIwdl 261 (315)
T KOG0279|consen 218 LWDLNEGKN---------------LYSLE------A--------FDIVNSLCFSPNRYWLCAA-------TATSIKIWDL 261 (315)
T ss_pred EEEccCCce---------------eEecc------C--------CCeEeeEEecCCceeEeec-------cCCceEEEec
Confidence 999873322 00111 0 1246788999987665522 2234888888
Q ss_pred ccCceeeeeeeccccCC
Q 000424 247 REGRKQLFAVLQSARGS 263 (1525)
Q Consensus 247 ~eg~~q~~~tlq~~~~~ 263 (1525)
..++ ++..|+.....
T Consensus 262 ~~~~--~v~~l~~d~~g 276 (315)
T KOG0279|consen 262 ESKA--VVEELKLDGIG 276 (315)
T ss_pred cchh--hhhhccccccc
Confidence 7764 34456654443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=195.25 Aligned_cols=207 Identities=20% Similarity=0.315 Sum_probs=163.3
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
-+++-|-..|+..|+ .|.++++||. ..+.-...+.+ |...|+.+++++..+++++++.|+.||.||+...+.++.+.
T Consensus 156 ~vavdP~n~wf~tgs-~DrtikIwDl-atg~LkltltG-hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh 232 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGS-ADRTIKIWDL-ATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH 232 (460)
T ss_pred EEeeCCCceeEEecC-CCceeEEEEc-ccCeEEEeecc-hhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc
Confidence 478899988865554 6999999995 44444444444 99999999999999999999999999999999999999998
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|...|. |++.||....|++|+.|.++||||+++ +.-+..+.||..+|.++.+.|-.+.++|||.|++|++||
T Consensus 233 GHlS~V~-----~L~lhPTldvl~t~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 233 GHLSGVY-----CLDLHPTLDVLVTGGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred cccceeE-----EEeccccceeEEecCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 999999 999999999999999999999999995 333445889999999999999999999999999999999
Q ss_pred eeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccC
Q 000424 170 TRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 170 lr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg 249 (1525)
++.-.. +.+ +. ..-..++++..||+.|+.| +++.| .++-|...+|
T Consensus 306 l~agkt-----~~t----------------lt-------~hkksvral~lhP~e~~fA------Sas~d-nik~w~~p~g 350 (460)
T KOG0285|consen 306 LRAGKT-----MIT----------------LT-------HHKKSVRALCLHPKENLFA------SASPD-NIKQWKLPEG 350 (460)
T ss_pred eccCce-----eEe----------------ee-------cccceeeEEecCCchhhhh------ccCCc-cceeccCCcc
Confidence 972110 000 00 0112578899999999876 44444 3456777777
Q ss_pred ceeeeeeeccccCCc
Q 000424 250 RKQLFAVLQSARGSS 264 (1525)
Q Consensus 250 ~~q~~~tlq~~~~~~ 264 (1525)
. ....+.+|+...
T Consensus 351 ~--f~~nlsgh~~ii 363 (460)
T KOG0285|consen 351 E--FLQNLSGHNAII 363 (460)
T ss_pred c--hhhcccccccee
Confidence 3 333466666643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-15 Score=174.99 Aligned_cols=154 Identities=12% Similarity=0.212 Sum_probs=128.6
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTL 89 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL 89 (1525)
-|+|.++...+......+...--+-..+.+..+--+.+ |...|++++|-|..+ .+++|++|++|.+|+=.-++...++
T Consensus 108 Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G-hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~ 186 (603)
T KOG0318|consen 108 DISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG-HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF 186 (603)
T ss_pred cceeCCCCcEEEEEecCccceeEEEEecCCCccceeec-cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc
Confidence 46777776666666555555433344556666666666 999999999999998 5999999999999987777778888
Q ss_pred e-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeec---ccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 90 Q-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ---VGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 90 ~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~---gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
+ |.+.|+ ||.|+|||..+++.+.||+|.+||-.+ ...++.+. +|...|.+++|+||+..|+|+|.|.++
T Consensus 187 r~HskFV~-----~VRysPDG~~Fat~gsDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 187 REHSKFVN-----CVRYSPDGSRFATAGSDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTI 259 (603)
T ss_pred ccccccee-----eEEECCCCCeEEEecCCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceE
Confidence 8 999999 999999999999999999999999885 33444455 899999999999999999999999999
Q ss_pred eEEEeee
Q 000424 166 QVWKTRV 172 (1525)
Q Consensus 166 kIWDlr~ 172 (1525)
||||+.+
T Consensus 260 KIWdVs~ 266 (603)
T KOG0318|consen 260 KIWDVST 266 (603)
T ss_pred EEEEeec
Confidence 9999873
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=199.53 Aligned_cols=192 Identities=19% Similarity=0.311 Sum_probs=157.2
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ- 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~- 90 (1525)
|||+| ....|+++++|.++++|++. ..+...++.+ |.--|++++|||...++++|+.|..|++||.+++.|+.++.
T Consensus 186 lafSp-nDskF~t~SdDg~ikiWdf~-~~kee~vL~G-HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 186 LAFSP-NDSKFLTCSDDGTIKIWDFR-MPKEERVLRG-HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred eccCC-CCceeEEecCCCeEEEEecc-CCchhheecc-CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence 79999 45557788899999999965 4455566655 99999999999999999999999999999999999999999
Q ss_pred cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcC-CCCEEEEEECCCCeeEEE
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP-dg~lLaSgS~DgtIkIWD 169 (1525)
|.+.|. .+.|+|+++||+++|.|.+++|+|+++... ...+.+|...|+++.||| ...+|.||+.||.|..|.
T Consensus 263 HKntVl-----~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 263 HKNTVL-----AVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred ccceEE-----EEEEcCCCCeeEEccCCceEEEEehhHhHH--HHHhhcchhhheeeccccccccceeeccCCCceEEEe
Confidence 999999 999999999999999999999999995322 223669999999999999 456889999999999998
Q ss_pred eeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccccc
Q 000424 170 TRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYT 246 (1525)
Q Consensus 170 lr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~ 246 (1525)
+..... +. .++ ..+. ..||.++|||-+-+.+ +++.|..+|.|.+
T Consensus 336 v~~~~p-----~~------------~i~---~AHd-------~~iwsl~~hPlGhil~------tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 336 VGLEEP-----LG------------EIP---PAHD-------GEIWSLAYHPLGHILA------TGSNDRTVRFWTR 379 (464)
T ss_pred cccccc-----cc------------CCC---cccc-------cceeeeeccccceeEe------ecCCCcceeeecc
Confidence 752111 00 000 1111 2589999999888877 8888888887764
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=193.73 Aligned_cols=233 Identities=15% Similarity=0.244 Sum_probs=168.0
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEEcCCCcEEEEEe
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-GLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~D-gtIrIWDi~t~k~l~tL~ 90 (1525)
.+|||.-..+.+++.+ .-..++. ...-.....+.- -..+|..++|+.+|.++|.||.. |.+-+|+.++..-+...+
T Consensus 271 a~fH~~t~~lvvgFss-G~f~Lye-lP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSS-GEFGLYE-LPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ 347 (893)
T ss_pred eeccCCceEEEEEecC-CeeEEEe-cCCceEEEEeec-ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc
Confidence 3566666666666642 2222222 111112222222 24789999999999999998865 789999999887777777
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|...++ +++|+|||+++++|++||.|||||.++ .-|+.+++.|++.|+.+.|+-.|+.++|.|.||+|+.||
T Consensus 348 gH~~~i~-----~l~YSpDgq~iaTG~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 348 GHSDRIT-----SLAYSPDGQLIATGAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred cccccee-----eEEECCCCcEEEeccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 999999 999999999999999999999999994 445567889999999999999999999999999999999
Q ss_pred eeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccC
Q 000424 170 TRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 170 lr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg 249 (1525)
+....+ ...|..|..+ -..+++..|.+-++.. .+-|.=.+++|....|
T Consensus 421 lkRYrN------fRTft~P~p~---------------------QfscvavD~sGelV~A-----G~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 421 LKRYRN------FRTFTSPEPI---------------------QFSCVAVDPSGELVCA-----GAQDSFEIFVWSVQTG 468 (893)
T ss_pred ecccce------eeeecCCCce---------------------eeeEEEEcCCCCEEEe-----eccceEEEEEEEeecC
Confidence 975544 1122233211 1356888888876541 2334446778888777
Q ss_pred ceeeeeeeccccCCcccchhhhcccCCCcccc-hhhHHHHHHHhhhccCCCceeeeh
Q 000424 250 RKQLFAVLQSARGSSASVLKEKLSSMGSSGIL-ADHQLQAQLQEHHLKGHSHLTISD 305 (1525)
Q Consensus 250 ~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l-~~~ql~~~~~~~~~~~~~~~~I~d 305 (1525)
|+.++|.||.+++.++ .+.++|+. .. ..| |++++|||
T Consensus 469 --qllDiLsGHEgPVs~l---~f~~~~~~-LaS~SW-------------DkTVRiW~ 506 (893)
T KOG0291|consen 469 --QLLDILSGHEGPVSGL---SFSPDGSL-LASGSW-------------DKTVRIWD 506 (893)
T ss_pred --eeeehhcCCCCcceee---EEccccCe-EEeccc-------------cceEEEEE
Confidence 6889999999998653 24444541 11 223 89999999
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-18 Score=196.10 Aligned_cols=238 Identities=15% Similarity=0.210 Sum_probs=178.7
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
-..|.|.|..--+|.++..+..|++|+....+++++.+.+ |.++|+.+.|+++|..|+|++.|++||+||..+|+++..
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence 3456777877777888888999999999887888877776 999999999999999999999999999999999999999
Q ss_pred EecCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeE
Q 000424 89 LQLDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV 167 (1525)
Q Consensus 89 L~H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkI 167 (1525)
|.....+. ||.|+||+ +.+++|+.|+.|+.||+++ ..+++.+..|-+.|..+.|-++++.++|.|+|++++|
T Consensus 296 f~~~~~~~-----cvkf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 296 FHLDKVPT-----CVKFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred EecCCCce-----eeecCCCCCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 99777788 99999998 7888999999999999995 4566667789999999999999999999999999999
Q ss_pred EEeeee------cCCCCCCCccccccCCC----cccccccccccccCCcceecC-----------C-CeeEEEEecCCCe
Q 000424 168 WKTRVI------INPNRPPMQANFFEPAS----IESIDIPRILSQQGGEAVYPL-----------P-RVRALEVHPRLNL 225 (1525)
Q Consensus 168 WDlr~~------~~p~~~~~~a~~f~p~~----Iesldi~~iLs~~gG~~vy~l-----------~-~V~~v~~HP~~Nl 225 (1525)
|+.+.- ..++.+.|.+.-..|.+ .+++|....+ .. -...|.+ + --..+.|+|++..
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~i-fs-~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAI-FS-TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEE-Ee-cccccccCHhhhhcceeccCceeeEEEcCCCCe
Confidence 999822 22233333333223322 1122211000 00 0001111 1 1235888888887
Q ss_pred EEEEecccccCCcccccccccccCceeeeeeeccccCCc
Q 000424 226 AVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 226 ial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~ 264 (1525)
+. +|..+.+...|.-+.. .++..++.|.+..
T Consensus 447 l~------SGdsdG~v~~wdwkt~--kl~~~lkah~~~c 477 (503)
T KOG0282|consen 447 LC------SGDSDGKVNFWDWKTT--KLVSKLKAHDQPC 477 (503)
T ss_pred EE------eecCCccEEEeechhh--hhhhccccCCcce
Confidence 76 7788888887765543 4667788886643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=195.85 Aligned_cols=217 Identities=18% Similarity=0.233 Sum_probs=148.6
Q ss_pred EEccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCC-------cEEEEEe-cCCceeecCceeEEEeCCC-CEEEE
Q 000424 45 KIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTY-------AVHYTLQ-LDNTIKLLGAGAFAFHPTL-EWLFV 114 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P-~g~~LaSGs~DgtIrIWDi~t~-------k~l~tL~-H~~~V~~~g~~sVaFsPdg-~~LaS 114 (1525)
.+. +|.++|.+++|+| ++.+|++|+.|++|++||+.+. .++.++. |...|. +++|+|++ ++|++
T Consensus 70 ~l~-GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-----~l~f~P~~~~iLaS 143 (493)
T PTZ00421 70 ILL-GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-----IVSFHPSAMNVLAS 143 (493)
T ss_pred eEe-CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-----EEEeCcCCCCEEEE
Confidence 344 4999999999999 7789999999999999998764 3567788 999999 99999985 68999
Q ss_pred EeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccc
Q 000424 115 GDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESI 194 (1525)
Q Consensus 115 gS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesl 194 (1525)
++.|++|+|||+++. .....+.+|...|++++|+|++.+|++++.|++|++||++.... .
T Consensus 144 gs~DgtVrIWDl~tg--~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~------v------------ 203 (493)
T PTZ00421 144 AGADMVVNVWDVERG--KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI------V------------ 203 (493)
T ss_pred EeCCCEEEEEECCCC--eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE------E------------
Confidence 999999999999953 34445678999999999999999999999999999999873110 0
Q ss_pred cccccccccCCcceecCCCeeEEEEecCCCeEE-EEecccccCCcccccccccccCceeeeeeeccccCCcccchhhhcc
Q 000424 195 DIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV-LLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLS 273 (1525)
Q Consensus 195 di~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlia-l~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~ 273 (1525)
..+..+.+ .....+.|+|..+.+. ..| +.+.|..+++|..+..... +.+...+.... +...++
T Consensus 204 ---~tl~~H~~------~~~~~~~w~~~~~~ivt~G~---s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~---~~~~~~ 267 (493)
T PTZ00421 204 ---SSVEAHAS------AKSQRCLWAKRKDLIITLGC---SKSQQRQIMLWDTRKMASP-YSTVDLDQSSA---LFIPFF 267 (493)
T ss_pred ---EEEecCCC------CcceEEEEcCCCCeEEEEec---CCCCCCeEEEEeCCCCCCc-eeEeccCCCCc---eEEEEE
Confidence 00111111 1123467787766543 222 3456788899987764322 22233222211 111222
Q ss_pred cCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeee
Q 000424 274 SMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 274 slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
+-+.+-++.. -++|+.+++||+.+...+++
T Consensus 268 d~d~~~L~lg-----------gkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 268 DEDTNLLYIG-----------SKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred cCCCCEEEEE-----------EeCCCeEEEEEeeCCceEEE
Confidence 2122111110 13688899999877766544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=174.85 Aligned_cols=264 Identities=15% Similarity=0.182 Sum_probs=180.1
Q ss_pred CCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc--EEEEEe-cCC
Q 000424 17 LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA--VHYTLQ-LDN 93 (1525)
Q Consensus 17 ~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k--~l~tL~-H~~ 93 (1525)
+.|.++++++-|.+|.+|.. ..|++...+.. -...|+.+...|++..||+|+. ..||+||+.++. ++.+|+ |.+
T Consensus 8 d~~viLvsA~YDhTIRfWqa-~tG~C~rTiqh-~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQA-LTGICSRTIQH-PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred CCceEEEeccCcceeeeeeh-hcCeEEEEEec-CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCC
Confidence 46789999999999999985 55667666654 4567999999999999999876 579999998874 689999 999
Q ss_pred ceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeee
Q 000424 94 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 94 ~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~ 173 (1525)
.|+ +|.|+-||+|+++||+||++||||++. ..+...+ .|..+|+++..||+...|++|..+|.|++||++..
T Consensus 85 NVt-----aVgF~~dgrWMyTgseDgt~kIWdlR~--~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 85 NVT-----AVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred ceE-----EEEEeecCeEEEecCCCceEEEEeccC--cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999 999999999999999999999999995 3332222 57899999999999999999999999999999832
Q ss_pred cC-----CC-CCCCccccccCCC-----cccccccccccccCCcceecCC----------CeeEEEEecCCCeEEEEecc
Q 000424 174 IN-----PN-RPPMQANFFEPAS-----IESIDIPRILSQQGGEAVYPLP----------RVRALEVHPRLNLAVLLFAN 232 (1525)
Q Consensus 174 ~~-----p~-~~~~~a~~f~p~~-----Iesldi~~iLs~~gG~~vy~l~----------~V~~v~~HP~~Nlial~F~~ 232 (1525)
.. |. ...++.-...+++ ++.---..+.....+..+.++. -+..+.++|..-++|
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la----- 231 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA----- 231 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE-----
Confidence 11 11 0111111111111 0000000000001111111111 255677778877777
Q ss_pred cccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhcee
Q 000424 233 FTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFL 312 (1525)
Q Consensus 233 ~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i 312 (1525)
+++.|...|+|...+= -.+--++.+|..-+.. -.|++.|-. ++ .-+.|+..++||+...+.|
T Consensus 232 -t~ssdktv~iwn~~~~-~kle~~l~gh~rWvWd---c~FS~dg~Y-lv------------Tassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 232 -TCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWD---CAFSADGEY-LV------------TASSDHTARLWDLSAGKEV 293 (311)
T ss_pred -eecCCceEEEEecCCc-eeeEEEeecCCceEEe---eeeccCccE-EE------------ecCCCCceeecccccCcee
Confidence 8888999999987654 3444578888876643 222222221 11 1125788999998777655
Q ss_pred ee
Q 000424 313 YS 314 (1525)
Q Consensus 313 ~s 314 (1525)
-.
T Consensus 294 ~q 295 (311)
T KOG0315|consen 294 RQ 295 (311)
T ss_pred ee
Confidence 44
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=174.61 Aligned_cols=212 Identities=17% Similarity=0.259 Sum_probs=165.7
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
-|.++|++..+..+. ...|.++|...+..-+...+.+|.+.|+++.|+-+|++.++|+.||++||||++...+.+.++
T Consensus 45 rLeiTpdk~~LAaa~--~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~ 122 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAG--NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ 122 (311)
T ss_pred eEEEcCCcchhhhcc--CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc
Confidence 478899988877665 457788886544432444444599999999999999999999999999999999999999999
Q ss_pred cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC--Cc-------------------eee---------------
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE--RP-------------------SMI--------------- 134 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~--~~-------------------s~i--------------- 134 (1525)
|..+|+ +|..||....|++|..+|.|+|||+... .. ++.
T Consensus 123 ~~spVn-----~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 123 HNSPVN-----TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CCCCcc-----eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 999999 9999999999999999999999999742 00 000
Q ss_pred -----------EeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCccccccccccccc
Q 000424 135 -----------GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQ 203 (1525)
Q Consensus 135 -----------~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~ 203 (1525)
..+++|+..+..+.+||++++|+|||.|.+++||++..++. +...+..+
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k--------------------le~~l~gh 257 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK--------------------LELVLTGH 257 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee--------------------eEEEeecC
Confidence 12467899999999999999999999999999998764321 11122211
Q ss_pred CCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCc
Q 000424 204 GGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 204 gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~ 264 (1525)
. .+ +|+++|+-++-++. +++.|...|.|..+.|+ .+..+++|.-..
T Consensus 258 ~---rW----vWdc~FS~dg~Ylv------Tassd~~~rlW~~~~~k--~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 258 Q---RW----VWDCAFSADGEYLV------TASSDHTARLWDLSAGK--EVRQYQGHHKAA 303 (311)
T ss_pred C---ce----EEeeeeccCccEEE------ecCCCCceeecccccCc--eeeecCCccccc
Confidence 1 12 67899998888877 88888999999988875 445788887643
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-18 Score=194.19 Aligned_cols=205 Identities=20% Similarity=0.375 Sum_probs=161.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
.+.+|..|.|.|+|+.|++|+..|.+.+|+..+......++ |+..|+ ++.|++++.|++||+.+|.||+|+.+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr-----~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR-----TMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce-----eEEEccCCCEEEEcCCCceEEecccch
Confidence 35689999999999999999999999999975443333344 999999 999999999999999999999998872
Q ss_pred CCceeeEeecccC-cCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcc
Q 000424 129 ERPSMIGIIQVGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEA 207 (1525)
Q Consensus 129 ~~~s~i~il~gH~-~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~ 207 (1525)
+.+...++|. ..|++++|+|+...|+|||+||+|+|||.+...+ ..+|+++|
T Consensus 170 ---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke---------------------e~vL~GHg--- 222 (464)
T KOG0284|consen 170 ---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE---------------------ERVLRGHG--- 222 (464)
T ss_pred ---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch---------------------hheeccCC---
Confidence 2222334554 8999999999999999999999999999863322 12344444
Q ss_pred eecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHH
Q 000424 208 VYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQ 287 (1525)
Q Consensus 208 vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~ 287 (1525)
| .|+++.|||+..+++ ++++|..+|.|..+.|. |+.++.+|.+.+-. .++-.-+. |
T Consensus 223 -w---dVksvdWHP~kgLia------sgskDnlVKlWDprSg~--cl~tlh~HKntVl~---~~f~~n~N------~--- 278 (464)
T KOG0284|consen 223 -W---DVKSVDWHPTKGLIA------SGSKDNLVKLWDPRSGS--CLATLHGHKNTVLA---VKFNPNGN------W--- 278 (464)
T ss_pred -C---CcceeccCCccceeE------EccCCceeEeecCCCcc--hhhhhhhccceEEE---EEEcCCCC------e---
Confidence 2 478999999999998 88999999999999985 56689999997633 33333332 2
Q ss_pred HHHHhhhccCCCceeeehhhhhceeee
Q 000424 288 AQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 288 ~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
-...+.|..+++.||.-.+++++
T Consensus 279 ----Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 279 ----LLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred ----eEEccCCceEEEEehhHhHHHHH
Confidence 22345788999999987777877
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=181.61 Aligned_cols=194 Identities=17% Similarity=0.216 Sum_probs=157.6
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
+-.-++|-|.+.+|+.++ +|.+|+.|+ .+.+.+...+.+ |.+.|+.++.+.||.++|+++.|.++++|-..+++|..
T Consensus 195 ~vS~V~f~P~gd~ilS~s-rD~tik~We-~~tg~cv~t~~~-h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCS-RDNTIKAWE-CDTGYCVKTFPG-HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred ceeeEEEEecCCeeeecc-cccceeEEe-cccceeEEeccC-chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 445678899998886555 799999998 677888877777 99999999999999999999999999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeCC----------C-----CEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcC
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPT----------L-----EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 151 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPd----------g-----~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP 151 (1525)
.++ |+.+|. |++|-|. + +++.++|.|++||+||+.+ ..+.-++.+|...|.+++|||
T Consensus 272 ~lR~hEh~vE-----ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t--g~cL~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 272 ELREHEHPVE-----CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST--GMCLFTLVGHDNWVRGVAFSP 344 (406)
T ss_pred hhhccccceE-----EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC--CeEEEEEecccceeeeeEEcC
Confidence 999 999999 9998653 2 4899999999999999995 445545789999999999999
Q ss_pred CCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEec
Q 000424 152 MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFA 231 (1525)
Q Consensus 152 dg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~ 231 (1525)
.|+||+||.+|+++++||++.... |.. +..+. . =++++.||.+..++.
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~c-----mk~----------------~~ah~------h-fvt~lDfh~~~p~Vv---- 392 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQC-----MKT----------------LEAHE------H-FVTSLDFHKTAPYVV---- 392 (406)
T ss_pred CCeEEEEEecCCcEEEEEecccee-----eec----------------cCCCc------c-eeEEEecCCCCceEE----
Confidence 999999999999999999973221 000 00000 0 156788888777665
Q ss_pred ccccCCcccccccc
Q 000424 232 NFTGGDNIKNRAAY 245 (1525)
Q Consensus 232 ~~s~~Dd~~~k~~~ 245 (1525)
+|+-|.+.|.|-
T Consensus 393 --TGsVdqt~KvwE 404 (406)
T KOG0295|consen 393 --TGSVDQTVKVWE 404 (406)
T ss_pred --eccccceeeeee
Confidence 777777777654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=173.03 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=175.1
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
-.+-+.|||+++.+..+. .|.-|.+|+......-..++++ |++.|+.+.|.+++..+++++.|.+|+.||.+++++.+
T Consensus 49 eI~~~~F~P~gs~~aSgG-~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG-SDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred eEEEEEECCCCCeEeecC-CcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 346689999988876666 4778889997666666677776 99999999999999999999999999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeCCCC-EEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~-~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
.++ |.+-|+ +++-+..|. .+.|+++|+++|+||+++ +..+.++ .....++++.|..++.-+.+|+-|+.|
T Consensus 127 k~k~h~~~vN-----s~~p~rrg~~lv~SgsdD~t~kl~D~R~--k~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 127 KHKGHTSFVN-----SLDPSRRGPQLVCSGSDDGTLKLWDIRK--KEAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred hhccccceee-----ecCccccCCeEEEecCCCceEEEEeecc--cchhhcc-ccceeEEEEEecccccceeeccccCce
Confidence 999 999999 887444454 556788999999999994 3333222 235678999999999999999999999
Q ss_pred eEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccc
Q 000424 166 QVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAY 245 (1525)
Q Consensus 166 kIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~ 245 (1525)
++||+|.. +...+++++. ..|+.+.-.|.++.+- +-+=|.+.++|.
T Consensus 199 kvWd~r~~---------------------d~~~~lsGh~-------DtIt~lsls~~gs~ll------snsMd~tvrvwd 244 (338)
T KOG0265|consen 199 KVWDLRKN---------------------DGLYTLSGHA-------DTITGLSLSRYGSFLL------SNSMDNTVRVWD 244 (338)
T ss_pred eeeccccC---------------------cceEEeeccc-------CceeeEEeccCCCccc------cccccceEEEEE
Confidence 99999721 1111222211 1234444444444332 333344444454
Q ss_pred cccC--ceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeee
Q 000424 246 TREG--RKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 246 ~~eg--~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
.+.- ...++.+++||.-+-..-+..--|+-+..++-++. .|+...|||-.-+..+|-
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags------------~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS------------ADRFVYVWDTTSRRILYK 303 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc------------ccceEEEeecccccEEEE
Confidence 4331 22345566666554322122333444445555555 799999999888888855
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=188.88 Aligned_cols=204 Identities=17% Similarity=0.243 Sum_probs=151.3
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCC------ccceEEccCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEc
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG------RAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNI 80 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g------k~~t~ik~~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi 80 (1525)
.-..++|+|....+++++..|.+|.+|+..+++ .+...+. +|.+.|.+++|||++ .+|++|+.|++|+|||+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 456799999544455566679999999964432 1233444 499999999999986 68999999999999999
Q ss_pred CCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcC-eEEEEEcCCCCEEEE
Q 000424 81 HTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQP-ITSVAWLPMLRLLVT 158 (1525)
Q Consensus 81 ~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~-VtsIafsPdg~lLaS 158 (1525)
.+++.+..+. |...|. +++|+|+|..|++++.|++|++||.++. ..+..+.+|... +..+.|++++..+++
T Consensus 156 ~tg~~~~~l~~h~~~V~-----sla~spdG~lLatgs~Dg~IrIwD~rsg--~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 156 ERGKAVEVIKCHSDQIT-----SLEWNLDGSLLCTTSKDKKLNIIDPRDG--TIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred CCCeEEEEEcCCCCceE-----EEEEECCCCEEEEecCCCEEEEEECCCC--cEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 9999999999 999999 9999999999999999999999999953 334446678765 457889999888877
Q ss_pred EE----CCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccc
Q 000424 159 LC----RDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFT 234 (1525)
Q Consensus 159 gS----~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s 234 (1525)
++ .|++|++||+|....+ .. ..+ +... ..+..+.|+|..+++++ .
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p----~~----------~~~----~d~~--------~~~~~~~~d~d~~~L~l-----g 277 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASP----YS----------TVD----LDQS--------SALFIPFFDEDTNLLYI-----G 277 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCc----ee----------Eec----cCCC--------CceEEEEEcCCCCEEEE-----E
Confidence 64 4789999998743211 00 000 0000 12345678888887662 2
Q ss_pred cCCcccccccccccCc
Q 000424 235 GGDNIKNRAAYTREGR 250 (1525)
Q Consensus 235 ~~Dd~~~k~~~~~eg~ 250 (1525)
+..|..++.|..++++
T Consensus 278 gkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 278 SKGEGNIRCFELMNER 293 (493)
T ss_pred EeCCCeEEEEEeeCCc
Confidence 3357788888877764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-17 Score=184.03 Aligned_cols=242 Identities=13% Similarity=0.178 Sum_probs=183.9
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CcEEEEEe
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT-YAVHYTLQ 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t-~k~l~tL~ 90 (1525)
+-|||..+.++.+. .+.++++|++..+. ....+++ |.+.|..|+|+..|.++++++.|-.+++||..+ .++++.+.
T Consensus 114 v~~hp~~~~v~~as-~d~tikv~D~~tg~-~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~ 190 (406)
T KOG0295|consen 114 VIFHPSEALVVSAS-EDATIKVFDTETGE-LERSLRG-HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI 190 (406)
T ss_pred eeeccCceEEEEec-CCceEEEEEccchh-hhhhhhc-cccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc
Confidence 45799999887665 69999999975553 3556666 999999999999999999999999999999877 57788888
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|+..|. +|+|-|.|.+|+|++.|.+|++||..+ ..++.++.+|+..|..+..+.||.++++||.|.+|++|-
T Consensus 191 gh~h~vS-----~V~f~P~gd~ilS~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 191 GHEHGVS-----SVFFLPLGDHILSCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred Cccccee-----eEEEEecCCeeeecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 999999 999999999999999999999999995 445556779999999999999999999999999999998
Q ss_pred eeee-----cCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEeccc---------cc
Q 000424 170 TRVI-----INPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANF---------TG 235 (1525)
Q Consensus 170 lr~~-----~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~---------s~ 235 (1525)
+.+. +..+.++ +.+++|-|..-+..+.++.. ++
T Consensus 264 ~~t~~~k~~lR~hEh~---------------------------------vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 264 VATKQCKAELREHEHP---------------------------------VECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred eccchhhhhhhccccc---------------------------------eEEEEecccccCcchhhccCCCCCccEEEee
Confidence 7632 1111111 22233332222111111110 78
Q ss_pred CCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeee
Q 000424 236 GDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 236 ~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
+-|+.+|.|....|+. .-||-||.+-+.++. +.+.|+.. ...-+|.+++|||+..+.+..+
T Consensus 311 SrDktIk~wdv~tg~c--L~tL~ghdnwVr~~a------f~p~Gkyi----------~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMC--LFTLVGHDNWVRGVA------FSPGGKYI----------LSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cccceEEEEeccCCeE--EEEEecccceeeeeE------EcCCCeEE----------EEEecCCcEEEEEeccceeeec
Confidence 8899999999999864 448999999875432 22233321 1123799999999988877755
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-16 Score=171.71 Aligned_cols=183 Identities=19% Similarity=0.225 Sum_probs=148.8
Q ss_pred CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCce
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTI 95 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P-~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V 95 (1525)
...+++++ .|+++.+|+ +|.+.....+.+ |.+-|.++++.| +++.|++|+-|++.+|||++.+.+..+|. |+..|
T Consensus 156 D~~ilT~S-GD~TCalWD-ie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI 232 (343)
T KOG0286|consen 156 DNHILTGS-GDMTCALWD-IETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI 232 (343)
T ss_pred CCceEecC-CCceEEEEE-cccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc
Confidence 34444554 699999999 788887777776 999999999999 88999999999999999999999999999 99999
Q ss_pred eecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeec--ccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeee
Q 000424 96 KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ--VGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 96 ~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~--gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~ 173 (1525)
+ +|+|+|+|.-+++||+|++.|+||++.. ++ +..++ .-..+|++++|+-.|++|+.|..|.++.+||.=.
T Consensus 233 N-----sv~ffP~G~afatGSDD~tcRlyDlRaD-~~-~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk- 304 (343)
T KOG0286|consen 233 N-----SVRFFPSGDAFATGSDDATCRLYDLRAD-QE-LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK- 304 (343)
T ss_pred c-----eEEEccCCCeeeecCCCceeEEEeecCC-cE-EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc-
Confidence 9 9999999999999999999999999952 22 22222 2245789999999999999999999999999521
Q ss_pred cCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccc
Q 000424 174 INPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAA 244 (1525)
Q Consensus 174 ~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~ 244 (1525)
. +...+|.+++ .||.++...|++-.++ +++=|...|+|
T Consensus 305 -~-------------------e~vg~L~GHe-------NRvScl~~s~DG~av~------TgSWDs~lriW 342 (343)
T KOG0286|consen 305 -G-------------------ERVGVLAGHE-------NRVSCLGVSPDGMAVA------TGSWDSTLRIW 342 (343)
T ss_pred -c-------------------ceEEEeeccC-------CeeEEEEECCCCcEEE------ecchhHheeec
Confidence 0 0112344444 3789999999987766 77777777766
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.9e-16 Score=177.47 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=169.2
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
.--+.+||....++.++ .++.+.+|.. ....+++.+.- |..+|+.+..||+|.||++++.|+++...|++++.++..
T Consensus 264 i~~v~~~~~~~~v~~aS-ad~~i~vws~-~~~s~~~~~~~-h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 264 ITSVKFHKDLDTVITAS-ADEIIRVWSV-PLSSEPTSSRP-HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred EEEEEeccchhheeecC-CcceEEeecc-ccccCcccccc-ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE
Confidence 34577899988887776 5888988884 33446666666 999999999999999999999999999999999998877
Q ss_pred EecC---CceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 89 LQLD---NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 89 L~H~---~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
..++ -.++ +.+|||||-.+.+|..|+.|+|||+.+. .-+.-+-+|+.+|..|+|+.+|-||+++++|+.|
T Consensus 341 vs~~~s~v~~t-----s~~fHpDgLifgtgt~d~~vkiwdlks~--~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 341 VSDETSDVEYT-----SAAFHPDGLIFGTGTPDGVVKIWDLKSQ--TNVAKFPGHTGPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred EeeccccceeE-----EeeEcCCceEEeccCCCceEEEEEcCCc--cccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence 7753 3477 9999999999999999999999999953 2334466999999999999999999999999999
Q ss_pred eEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccc
Q 000424 166 QVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAY 245 (1525)
Q Consensus 166 kIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~ 245 (1525)
++||+|...+-.. +..+ ....++.+.|.+++.+.+ .++.+.++++..
T Consensus 414 ~lwDLRKl~n~kt------~~l~---------------------~~~~v~s~~fD~SGt~L~------~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 414 KLWDLRKLKNFKT------IQLD---------------------EKKEVNSLSFDQSGTYLG------IAGSDLQVYICK 460 (506)
T ss_pred EEEEehhhcccce------eecc---------------------ccccceeEEEcCCCCeEE------eecceeEEEEEe
Confidence 9999996543111 1000 001367888888887766 557788888777
Q ss_pred cccCceeeeeeeccccCCc
Q 000424 246 TREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 246 ~~eg~~q~~~tlq~~~~~~ 264 (1525)
.....|.+...+..|.+.+
T Consensus 461 k~~k~W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSGLS 479 (506)
T ss_pred cccccceeeehhhhccccc
Confidence 6677778877777777655
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=178.61 Aligned_cols=151 Identities=12% Similarity=0.174 Sum_probs=131.2
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEc-------cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-------TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik-------~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k 84 (1525)
..|+|++.++..|+ -|.-+.+|+...+ +.-.-++ .-|..+|.++.|+.+..++|+|+.||.|++|.+.++.
T Consensus 219 A~FSPDgqyLvsgS-vDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGS-VDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred eeeCCCCceEeecc-ccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 46899999987666 5888999987554 2111111 1278999999999999999999999999999999999
Q ss_pred EEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECC
Q 000424 85 VHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 85 ~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~D 162 (1525)
|++.|. |...|+ |+.|+.|+..++++|.|.++||.-+.+ ..+...+.+|++.|+.+.|.++|.+++|+|.|
T Consensus 297 ClRrFdrAHtkGvt-----~l~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVT-----CLSFSRDNSQILSASFDQTVRIHGLKS--GKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred HHHHhhhhhccCee-----EEEEccCcchhhcccccceEEEecccc--chhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 999999 999999 999999999999999999999998885 34444567999999999999999999999999
Q ss_pred CCeeEEEee
Q 000424 163 GSLQVWKTR 171 (1525)
Q Consensus 163 gtIkIWDlr 171 (1525)
|+|++|+.+
T Consensus 370 gtvkvW~~K 378 (508)
T KOG0275|consen 370 GTVKVWHGK 378 (508)
T ss_pred ccEEEecCc
Confidence 999999987
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=170.61 Aligned_cols=201 Identities=18% Similarity=0.224 Sum_probs=164.7
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCc
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k 84 (1525)
+|+=|-++|++...-++.++..|.++.++++.....+..+++. |+..|.+++|++..+ .++++|.|++||+||..-.+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 5778899999998888888889999999997776676666666 999999999999765 68888999999999998889
Q ss_pred EEEEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcC-CCCEEEEEEC
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCR 161 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP-dg~lLaSgS~ 161 (1525)
.+.|+. |..-|. ...||| ..+.++++|.|+++++||++..-+.+. +..|...|.|+.|+. +...++||+.
T Consensus 139 Sv~Tf~gh~~~Iy-----~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 139 SVQTFNGHNSCIY-----QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--IEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred ceEeecCCccEEE-----EEecCCCCCCeEEEccCCceEEEEEecCCCceeE--EEeccceeEeecccccCCcEEEecCC
Confidence 999999 999999 999999 578899999999999999996433443 678999999999987 6678999999
Q ss_pred CCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecC-CCeEEEEecccccCCccc
Q 000424 162 DGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPR-LNLAVLLFANFTGGDNIK 240 (1525)
Q Consensus 162 DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~-~Nlial~F~~~s~~Dd~~ 240 (1525)
|+.|++||+|.+..| . ..|..++ | -|+.+.|.|. .+++| +++=|.+
T Consensus 212 d~~vr~wDir~~r~p--------l------------~eL~gh~----~---AVRkvk~Sph~~~lLa------SasYDmT 258 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTP--------L------------FELNGHG----L---AVRKVKFSPHHASLLA------SASYDMT 258 (311)
T ss_pred CceEEEEehhhcccc--------c------------eeecCCc----e---EEEEEecCcchhhHhh------hccccce
Confidence 999999999965431 0 0122211 1 3677888886 46666 7888888
Q ss_pred ccccccc
Q 000424 241 NRAAYTR 247 (1525)
Q Consensus 241 ~k~~~~~ 247 (1525)
.++|...
T Consensus 259 ~riw~~~ 265 (311)
T KOG0277|consen 259 VRIWDPE 265 (311)
T ss_pred EEecccc
Confidence 8888765
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-16 Score=171.89 Aligned_cols=153 Identities=21% Similarity=0.341 Sum_probs=125.0
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeec-----C-----------CccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVE-----G-----------GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 75 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve-----~-----------gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtI 75 (1525)
.+|+|++.++.+|+. |-+|++.+.-. . ..++.....+|.++|+.++|||...+|++|+.|++|
T Consensus 118 aafs~DG~lvATGsa-D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv 196 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSA-DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV 196 (430)
T ss_pred eeeCCCCcEEEccCC-cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence 578999999877774 88999888531 1 123444455799999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEe---cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceee-EeecccCcCeEEEEEcC
Q 000424 76 RAYNIHTYAVHYTLQ---LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI-GIIQVGSQPITSVAWLP 151 (1525)
Q Consensus 76 rIWDi~t~k~l~tL~---H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i-~il~gH~~~VtsIafsP 151 (1525)
|++|+......+.++ ...+|+ ++.|||.|.+|+.|.+-.++++||+++...-.. ..-++|+..|+++.+++
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vr-----siSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVR-----SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred EEEecccHHHHHHHHHhhccceee-----eEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence 999987655444444 567899 999999999999999999999999997411111 12357999999999999
Q ss_pred CCCEEEEEECCCCeeEEEe
Q 000424 152 MLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 152 dg~lLaSgS~DgtIkIWDl 170 (1525)
.+++.+|+|.||.|++||-
T Consensus 272 t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred CccEEEEeccCCcEEeecc
Confidence 9999999999999999994
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=179.19 Aligned_cols=206 Identities=18% Similarity=0.277 Sum_probs=153.9
Q ss_pred cCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEE-ccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCC
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHT 82 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~i-k~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t 82 (1525)
+.+--|-|+|+|...-.+.+..+...+.+|...++.+.+-.. +.+|++.|-.++|+|+.. +|+|||.||+|||||++.
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 445568899999777777788888999999877766543221 235999999999999875 799999999999999998
Q ss_pred C---cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC-CceeeEeecccCcCeEEEEEcCC-CCEE
Q 000424 83 Y---AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGSQPITSVAWLPM-LRLL 156 (1525)
Q Consensus 83 ~---k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~-~~s~i~il~gH~~~VtsIafsPd-g~lL 156 (1525)
+ .++.+ + |...|+ .|.|+.+-..|++|++||+++|||++.. ..+.++.++-|..+|+||.|||. ...|
T Consensus 290 ~~~~~~~~~-kAh~sDVN-----VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 290 GPKKAAVST-KAHNSDVN-----VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred CCccceeEe-eccCCcee-----eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 8 45555 5 999999 9999999889999999999999999974 33556778899999999999996 4577
Q ss_pred EEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccc-cccCCcceecCCCeeEEEEecCCCeEE
Q 000424 157 VTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRIL-SQQGGEAVYPLPRVRALEVHPRLNLAV 227 (1525)
Q Consensus 157 aSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iL-s~~gG~~vy~l~~V~~v~~HP~~Nlia 227 (1525)
+.++.|.+|.+||+.+..........+. .+ -.|++..| -.+-|. ..++.+.||+..+-..
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~----~~--L~dlPpQLLFVHqGQ-----ke~KevhWH~QiPG~l 424 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAA----EG--LQDLPPQLLFVHQGQ-----KEVKEVHWHRQIPGLL 424 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccc----cc--hhcCCceeEEEecch-----hHhhhheeccCCCCeE
Confidence 8888999999999986544221111110 00 11333332 222232 2467899999876554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-15 Score=172.00 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=130.6
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEc---cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK---TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik---~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
..+|-|++|+-..+.++|.++.++ ++ ++++++ ++|.+.|+++.|+|+|..|++++.||+|.+||=++++.+.
T Consensus 152 s~~~KpsRPfRi~T~sdDn~v~ff---eG--PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 152 SVDFKPSRPFRIATGSDDNTVAFF---EG--PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred eeeccCCCceEEEeccCCCeEEEe---eC--CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE
Confidence 466779999999999999888554 44 344443 4699999999999999999999999999999999999999
Q ss_pred EEe----cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC----------C--ceee-----------------
Q 000424 88 TLQ----LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE----------R--PSMI----------------- 134 (1525)
Q Consensus 88 tL~----H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~----------~--~s~i----------------- 134 (1525)
.|. |.++|. +++|+||+..++++|.|.++||||+.+. . .+.+
T Consensus 227 ~l~~~~aHkGsIf-----alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 227 ELEDSDAHKGSIF-----ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred EecCCCCccccEE-----EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 997 999999 9999999999999999999999999852 0 0000
Q ss_pred ------------EeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 135 ------------GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 135 ------------~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.++.+|...|+++..+|++.+|.|||.||.|.-||..
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 2356899999999999999999999999999999987
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-15 Score=192.66 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=152.9
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P-~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
..++|+|.....++++..+.++.+|+. +.+.....+.. |.+.|.+++|+| ++.+|++|+.|++|++||+.++.++.+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~-~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDV-ARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEEC-CCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 357888764444556667999999995 44445555555 999999999997 678999999999999999999999988
Q ss_pred EecCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeE
Q 000424 89 LQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV 167 (1525)
Q Consensus 89 L~H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkI 167 (1525)
+.+...+. ++.|++ ++.++++|+.|++|++||+++.. .....+.+|...|+++.|+ ++.+|+|+|.|++|++
T Consensus 614 ~~~~~~v~-----~v~~~~~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 614 IKTKANIC-----CVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EecCCCeE-----EEEEeCCCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 88556788 999964 79999999999999999998532 1223456899999999997 6789999999999999
Q ss_pred EEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccc
Q 000424 168 WKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTR 247 (1525)
Q Consensus 168 WDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~ 247 (1525)
||++...... ....+ ..+..+. ..++.+.|+|.+++++ ++++|..+++|...
T Consensus 687 Wd~~~~~~~~---------~~~~l------~~~~gh~-------~~i~~v~~s~~~~~la------sgs~D~~v~iw~~~ 738 (793)
T PLN00181 687 WDLSMSISGI---------NETPL------HSFMGHT-------NVKNFVGLSVSDGYIA------TGSETNEVFVYHKA 738 (793)
T ss_pred EeCCCCcccc---------CCcce------EEEcCCC-------CCeeEEEEcCCCCEEE------EEeCCCEEEEEECC
Confidence 9986321100 00000 0111111 2367789999999888 88889999988765
Q ss_pred cC
Q 000424 248 EG 249 (1525)
Q Consensus 248 eg 249 (1525)
.+
T Consensus 739 ~~ 740 (793)
T PLN00181 739 FP 740 (793)
T ss_pred CC
Confidence 43
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=180.02 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=117.8
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCC------------ccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGG------------RAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRA 77 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g------------k~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrI 77 (1525)
.|+++|++..+++.... .-.++++. ++. +-+...+ +|...+++.+|||..+ .|++++.||++||
T Consensus 219 sl~ys~Tg~~iLvvsg~-aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTK-GHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 219 SLQYSVTGDQILVVSGS-AQAKLLDR-DGFEIVEFSKGDQYIRDMYNTK-GHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred eeeecCCCCeEEEEecC-cceeEEcc-CCceeeeeeccchhhhhhhccC-CceeeeeccccccCcccceEEecCCCcEEE
Confidence 57888888877766643 33344442 221 1222333 4999999999999875 7999999999999
Q ss_pred EEcCCC-cEEEEEe------cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC-CceeeEeecccCc--CeEEE
Q 000424 78 YNIHTY-AVHYTLQ------LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGSQ--PITSV 147 (1525)
Q Consensus 78 WDi~t~-k~l~tL~------H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~-~~s~i~il~gH~~--~VtsI 147 (1525)
||+... +.+..|+ ..-+++ +++|+|||++|++|+.||+|.+||..+. ......+-++|.. .|+||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~t-----sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVT-----SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI 370 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCce-----eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence 997654 3444454 223456 8999999999999999999999998763 2222234678877 99999
Q ss_pred EEcCCCCEEEEEECCCCeeEEEeeee
Q 000424 148 AWLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 148 afsPdg~lLaSgS~DgtIkIWDlr~~ 173 (1525)
+||++|++|+|-+.|+++++||+|..
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred EeccccchhhhccCCCceeeeecccc
Confidence 99999999999999999999999943
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=154.36 Aligned_cols=234 Identities=20% Similarity=0.262 Sum_probs=166.5
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
+....++|+|++..++++. .+..+.+|+.. .+.....+.. |...+..+.|+|++.++++++.|+.|++||+.+++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS-GDGTIKVWDLE-TGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred CCEEEEEEcCCCCEEEEee-cCcEEEEEEee-CCCcEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 5667899999999887776 47889898854 3334444444 9999999999999999999999999999999998888
Q ss_pred EEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
..+. |...+. ++.|++++.++++++.|+.|++||+++ ......+..|...|++++|+|++.++++++.|+.|
T Consensus 87 ~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 87 RTLTGHTSYVS-----SVAFSPDGRILSSSSRDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred EEEeccCCcEE-----EEEEcCCCCEEEEecCCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 8888 888999 999999988888888899999999984 33333456899999999999999999999889999
Q ss_pred eEEEeeee-----cCCCCCCCccccccCCC-----------cccccccccccccCCcceec----CCCeeEEEEecCCCe
Q 000424 166 QVWKTRVI-----INPNRPPMQANFFEPAS-----------IESIDIPRILSQQGGEAVYP----LPRVRALEVHPRLNL 225 (1525)
Q Consensus 166 kIWDlr~~-----~~p~~~~~~a~~f~p~~-----------Iesldi~~iLs~~gG~~vy~----l~~V~~v~~HP~~Nl 225 (1525)
++||++.. ...+........+.+++ +..+|+. .+..... -..+..+.|+|+.++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS------TGKCLGTLRGHENGVNSVAFSPDGYL 233 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC------CCceecchhhcCCceEEEEEcCCCcE
Confidence 99998721 11111111111222221 1111111 0111111 125778888888666
Q ss_pred EEEEecccccCCcccccccccccCceeeeeeeccccCCc
Q 000424 226 AVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 226 ial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~ 264 (1525)
++ +++.+..+++|....++ ....++.|.+..
T Consensus 234 ~~------~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i 264 (289)
T cd00200 234 LA------SGSEDGTIRVWDLRTGE--CVQTLSGHTNSV 264 (289)
T ss_pred EE------EEcCCCcEEEEEcCCce--eEEEccccCCcE
Confidence 65 45557778888766542 344566665543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8e-16 Score=186.67 Aligned_cols=195 Identities=16% Similarity=0.216 Sum_probs=161.7
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecC--CccceEE-----ccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEG--GRAPTKI-----KTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT 82 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~--gk~~t~i-----k~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t 82 (1525)
--++++-.++..|++.+.|.++++|+.... ...+..+ ..-|.+.|++++++|++.++|+||.|.+.|||++..
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC
Confidence 346777788889999999999999986441 1111121 124999999999999999999999999999999999
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEEC
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~ 161 (1525)
.....+|. |...|. ||.|+|..+.++++|.|+|||||.++ ..++.++++||+..|..++|-.++..|+||+.
T Consensus 495 ~~l~~vLsGH~RGvw-----~V~Fs~~dq~laT~SgD~TvKIW~is--~fSClkT~eGH~~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 495 LRLLGVLSGHTRGVW-----CVSFSKNDQLLATCSGDKTVKIWSIS--TFSCLKTFEGHTSAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred ceEEEEeeCCccceE-----EEEeccccceeEeccCCceEEEEEec--cceeeeeecCccceeEeeeeeeCCcEEEeccC
Confidence 99999999 999999 99999999999999999999999999 57888899999999999999999999999999
Q ss_pred CCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccc
Q 000424 162 DGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241 (1525)
Q Consensus 162 DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~ 241 (1525)
||-+|+|++++.-. +.++| .+. .+||.++..|..+++. +++-|..+
T Consensus 568 dGliKlWnikt~eC---------------~~tlD------~H~-------DrvWaL~~~~~~~~~~------tgg~Dg~i 613 (775)
T KOG0319|consen 568 DGLIKLWNIKTNEC---------------EMTLD------AHN-------DRVWALSVSPLLDMFV------TGGGDGRI 613 (775)
T ss_pred CCcEEEEeccchhh---------------hhhhh------hcc-------ceeEEEeecCccceeE------ecCCCeEE
Confidence 99999999873211 11122 222 3789999999888766 67777766
Q ss_pred cccc
Q 000424 242 RAAY 245 (1525)
Q Consensus 242 k~~~ 245 (1525)
..|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 6665
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=168.64 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=161.4
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
|.+++++..||.++ .|.++..|| .+.++...+.+. |.+-|++++-...|+ ++.||++|+++|+||+++..+++++.
T Consensus 96 l~~~~d~s~i~S~g-tDk~v~~wD-~~tG~~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 96 LHGMRDGSHILSCG-TDKTVRGWD-AETGKRIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred eeeccCCCEEEEec-CCceEEEEe-cccceeeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence 55778888876555 699999999 577788888887 999999998555565 68899999999999999999999998
Q ss_pred cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
..-.++ +|.|..++..+.+|+-|+.|++||++. ....-++.||.+.|++++.+|+|.++.|-+.|.++++||+
T Consensus 173 ~kyqlt-----Av~f~d~s~qv~sggIdn~ikvWd~r~--~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 173 NKYQLT-----AVGFKDTSDQVISGGIDNDIKVWDLRK--NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred cceeEE-----EEEecccccceeeccccCceeeecccc--CcceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence 777788 999999999999999999999999984 3333448899999999999999999999999999999999
Q ss_pred eeecCCCCC-------------CCccccccCCC--cc--ccc-ccccccccCCcceecCCC----eeEEEEecCCCeEEE
Q 000424 171 RVIINPNRP-------------PMQANFFEPAS--IE--SID-IPRILSQQGGEAVYPLPR----VRALEVHPRLNLAVL 228 (1525)
Q Consensus 171 r~~~~p~~~-------------~~~a~~f~p~~--Ie--sld-i~~iLs~~gG~~vy~l~~----V~~v~~HP~~Nlial 228 (1525)
|.....++. +.....+.|++ +. +.| ...++...+...+|-+|+ |+++.|||+...+.
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil- 324 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL- 324 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE-
Confidence 944332221 11111122211 11 111 111233333445666664 88999999999877
Q ss_pred EecccccCCccccc
Q 000424 229 LFANFTGGDNIKNR 242 (1525)
Q Consensus 229 ~F~~~s~~Dd~~~k 242 (1525)
+++.|+.++
T Consensus 325 -----s~~sdk~i~ 333 (338)
T KOG0265|consen 325 -----SCSSDKTIY 333 (338)
T ss_pred -----EeccCceeE
Confidence 555565543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=175.40 Aligned_cols=142 Identities=22% Similarity=0.280 Sum_probs=122.3
Q ss_pred EEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCc
Q 000424 22 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGA 100 (1525)
Q Consensus 22 f~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~ 100 (1525)
|.++..++.+.++- +...++..++.+ |.++|.++.|+|++.+|+++++|+|+|||+.....+...|. |...|.
T Consensus 332 F~ts~td~~i~V~k-v~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~---- 405 (524)
T KOG0273|consen 332 FATSSTDGCIHVCK-VGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY---- 405 (524)
T ss_pred EeecCCCceEEEEE-ecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcccee----
Confidence 44555566666655 445556666666 99999999999999999999999999999999989999999 999999
Q ss_pred eeEEEeCCCC---------EEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 101 GAFAFHPTLE---------WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 101 ~sVaFsPdg~---------~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.+.|+|+|. .+++++.|++|++||+.. ..++..+..|..+|.+++|+|+|+++++||.||.|.+|+.+
T Consensus 406 -t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 406 -TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred -eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 999998764 589999999999999994 45555578999999999999999999999999999999987
Q ss_pred e
Q 000424 172 V 172 (1525)
Q Consensus 172 ~ 172 (1525)
+
T Consensus 483 ~ 483 (524)
T KOG0273|consen 483 T 483 (524)
T ss_pred c
Confidence 4
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-15 Score=182.41 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=100.8
Q ss_pred ceEEccCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCc--------EEEEEe-cCCceeecCceeEEEeCCCCEE
Q 000424 43 PTKIKTDLKKPIVNLACHPR-LPVLYVAYADGLIRAYNIHTYA--------VHYTLQ-LDNTIKLLGAGAFAFHPTLEWL 112 (1525)
Q Consensus 43 ~t~ik~~H~~~V~sIaf~P~-g~~LaSGs~DgtIrIWDi~t~k--------~l~tL~-H~~~V~~~g~~sVaFsPdg~~L 112 (1525)
...+. +|.++|.+++|+|+ +.+|++|+.|++|+|||+.+.. ++..+. |...|. +++|||++.++
T Consensus 67 v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-----sVaf~P~g~~i 140 (568)
T PTZ00420 67 VIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-----IIDWNPMNYYI 140 (568)
T ss_pred EEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-----EEEECCCCCeE
Confidence 33444 49999999999997 6899999999999999987542 345677 999999 99999998765
Q ss_pred -EEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 113 -FVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 113 -aSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
++++.|++|+|||+++.. ....+ .|...|.+++|+|+|.+|++++.|++|+|||+|.
T Consensus 141 LaSgS~DgtIrIWDl~tg~--~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEK--RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred EEEEeCCCeEEEEECCCCc--EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 688999999999999642 22122 3567899999999999999999999999999873
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=175.65 Aligned_cols=253 Identities=18% Similarity=0.239 Sum_probs=177.8
Q ss_pred cccCCcEEEEE-EcCCCCEEEEEEeccceEEEEEeecCC---------ccceEEccCCCCCeEEEEEcCCCC-EEEEEEC
Q 000424 3 SISVDTEVHLA-LTPLQPVVFFGFHRRMSVTVVGTVEGG---------RAPTKIKTDLKKPIVNLACHPRLP-VLYVAYA 71 (1525)
Q Consensus 3 ~~~~~~e~hLA-~hP~~p~Vf~s~~~d~sV~v~dtve~g---------k~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~ 71 (1525)
+|.-++||.=| ..|+.|.+..+......+.+++...-. ++...+++ |++.-.+++|++... .+++|+.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-ecccccccccccccceeEeeccC
Confidence 46778888644 559999999988889999999874321 22336666 999899999999766 7999999
Q ss_pred CCcEEEEEcCCCc-------EEEEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCc
Q 000424 72 DGLIRAYNIHTYA-------VHYTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQ 142 (1525)
Q Consensus 72 DgtIrIWDi~t~k-------~l~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~ 142 (1525)
|++|++||+.... +...+. |...|. .|+||+ +...+.++++|+.+.|||+++..........+|+.
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-----DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-----DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCccee-----hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 9999999986542 345566 999999 999999 45678889999999999999531222233569999
Q ss_pred CeEEEEEcCC-CCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEec
Q 000424 143 PITSVAWLPM-LRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHP 221 (1525)
Q Consensus 143 ~VtsIafsPd-g~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP 221 (1525)
.|+|++|+|. +.+|||||.|++|++||+|.+..+ +. .+..+. ..|..|.|.|
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~----lh----------------~~e~H~-------dev~~V~WSP 326 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP----LH----------------TFEGHE-------DEVFQVEWSP 326 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccC----ce----------------eccCCC-------cceEEEEeCC
Confidence 9999999995 568899999999999999954321 00 111111 2467899999
Q ss_pred C-CCeEEEEecccccCCccccccccc-ccCcee-----------eeeeeccccCCcccchhhhcccCCCcccchhhHHHH
Q 000424 222 R-LNLAVLLFANFTGGDNIKNRAAYT-REGRKQ-----------LFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQA 288 (1525)
Q Consensus 222 ~-~Nlial~F~~~s~~Dd~~~k~~~~-~eg~~q-----------~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~ 288 (1525)
. .++.| +++.|....+|.. +-|..| ++=+..||.+.+.- .+... ..
T Consensus 327 h~etvLA------SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D------fsWnp---------~e 385 (422)
T KOG0264|consen 327 HNETVLA------SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD------FSWNP---------NE 385 (422)
T ss_pred CCCceeE------ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc------ccCCC---------CC
Confidence 7 45555 5556666666653 444444 22366777765411 11111 12
Q ss_pred HHHhhhccCCCceeeehhhhh
Q 000424 289 QLQEHHLKGHSHLTISDIARK 309 (1525)
Q Consensus 289 ~~~~~~~~~~~~~~I~di~r~ 309 (1525)
-|......+|+.+-||++++.
T Consensus 386 PW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CeEEEEecCCceEEEeecccc
Confidence 233334558999999998876
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-14 Score=185.91 Aligned_cols=248 Identities=10% Similarity=0.087 Sum_probs=171.3
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecC---Cc---cceEEccCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG---GR---APTKIKTDLKKPIVNLACHPR-LPVLYVAYADGLIRAYN 79 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~---gk---~~t~ik~~H~~~V~sIaf~P~-g~~LaSGs~DgtIrIWD 79 (1525)
+...-++|+|++.+++++. .+..|.+|+.... +. .+..... +...|.+++|+|. +.+|++++.|++|++||
T Consensus 484 ~~V~~i~fs~dg~~latgg-~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG-VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CcEEEEEECCCCCEEEEEe-CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 3455699999999876665 6899999985321 11 1111122 4578999999975 67899999999999999
Q ss_pred cCCCcEEEEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEc-CCCCEE
Q 000424 80 IHTYAVHYTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL-PMLRLL 156 (1525)
Q Consensus 80 i~t~k~l~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafs-Pdg~lL 156 (1525)
+.+++.+..+. |...|+ +++|+| ++.+|++|+.|++|++||+++. ..+..+..| ..|.++.|+ +++.+|
T Consensus 562 ~~~~~~~~~~~~H~~~V~-----~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--~~~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVW-----SIDYSSADPTLLASGSDDGSVKLWSINQG--VSIGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred CCCCeEEEEecCCCCCEE-----EEEEcCCCCCEEEEEcCCCEEEEEECCCC--cEEEEEecC-CCeEEEEEeCCCCCEE
Confidence 99999999998 999999 999997 7899999999999999999853 333344444 679999995 579999
Q ss_pred EEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccC
Q 000424 157 VTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGG 236 (1525)
Q Consensus 157 aSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~ 236 (1525)
++|+.|++|++||++.... ... .+..+. ..|.++.|++ .+.++ +++
T Consensus 634 atgs~dg~I~iwD~~~~~~----~~~----------------~~~~h~-------~~V~~v~f~~-~~~lv------s~s 679 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKL----PLC----------------TMIGHS-------KTVSYVRFVD-SSTLV------SSS 679 (793)
T ss_pred EEEeCCCeEEEEECCCCCc----cce----------------EecCCC-------CCEEEEEEeC-CCEEE------EEE
Confidence 9999999999999863210 000 011111 2467788874 44444 667
Q ss_pred CcccccccccccC----ceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhcee
Q 000424 237 DNIKNRAAYTREG----RKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFL 312 (1525)
Q Consensus 237 Dd~~~k~~~~~eg----~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i 312 (1525)
.|..+++|..+.+ ....+.++.+|.+....+ .+.+.+. -++.+ ..++.+.|||.....++
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v---~~s~~~~-~lasg------------s~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV---GLSVSDG-YIATG------------SETNEVFVYHKAFPMPV 743 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE---EEcCCCC-EEEEE------------eCCCEEEEEECCCCCce
Confidence 7888999987643 124456788887654221 1111111 11122 25788888886555455
Q ss_pred ee
Q 000424 313 YS 314 (1525)
Q Consensus 313 ~s 314 (1525)
.+
T Consensus 744 ~s 745 (793)
T PLN00181 744 LS 745 (793)
T ss_pred EE
Confidence 44
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=177.98 Aligned_cols=158 Identities=8% Similarity=0.096 Sum_probs=126.7
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCc-------cceEEccCCCCCeEEEEEcCCCCE-EEEEECCCcEEEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR-------APTKIKTDLKKPIVNLACHPRLPV-LYVAYADGLIRAY 78 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk-------~~t~ik~~H~~~V~sIaf~P~g~~-LaSGs~DgtIrIW 78 (1525)
+....++|||..+.++++++.+.+|.+|+...++. +...+. +|...|.+++|||++.. +++|+.|++|+||
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 45678999998666666777899999999654322 112333 59999999999999875 5799999999999
Q ss_pred EcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEE-----EEEcCCC
Q 000424 79 NIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITS-----VAWLPML 153 (1525)
Q Consensus 79 Di~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~Vts-----IafsPdg 153 (1525)
|+.+++....+.|...|. +++|+|+|.+|++++.|++|+|||.++. ..+..+.+|...+.+ ..|++++
T Consensus 154 Dl~tg~~~~~i~~~~~V~-----SlswspdG~lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 154 DIENEKRAFQINMPKKLS-----SLKWNIKGNLLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred ECCCCcEEEEEecCCcEE-----EEEECCCCCEEEEEecCCEEEEEECCCC--cEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999998888887777899 9999999999999999999999999953 344456788876543 3356899
Q ss_pred CEEEEEECCC----CeeEEEeee
Q 000424 154 RLLVTLCRDG----SLQVWKTRV 172 (1525)
Q Consensus 154 ~lLaSgS~Dg----tIkIWDlr~ 172 (1525)
.+|+|++.|+ +|+|||++.
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCC
Confidence 9999988774 799999884
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=163.25 Aligned_cols=155 Identities=17% Similarity=0.288 Sum_probs=132.5
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
+.=|.+++||+.+++.+|..+ .--.+|+...+. .... ..+|++.|.++.|+.+|.+||+|..+|.|+||...++...
T Consensus 65 ~svFavsl~P~~~l~aTGGgD-D~AflW~~~~ge-~~~e-ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGD-DLAFLWDISTGE-FAGE-LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred CceEEEEeCCCCceEEecCCC-ceEEEEEccCCc-ceeE-ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE
Confidence 455889999999998888764 444577765544 3333 3469999999999999999999999999999999999888
Q ss_pred EEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
..+. .-..+. -+.|||.+..|+.|+.||.|.+|.+.+ .....++.||+.++++=.|.|+|+.++++..||+|
T Consensus 142 ~~~~~e~~die-----Wl~WHp~a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 142 WKLDQEVEDIE-----WLKWHPRAHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred EEeecccCceE-----EEEecccccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 8887 556677 899999999999999999999999985 24445678999999999999999999999999999
Q ss_pred eEEEee
Q 000424 166 QVWKTR 171 (1525)
Q Consensus 166 kIWDlr 171 (1525)
++||..
T Consensus 215 ~~Wn~k 220 (399)
T KOG0296|consen 215 IVWNPK 220 (399)
T ss_pred EEEecC
Confidence 999997
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=176.79 Aligned_cols=246 Identities=16% Similarity=0.246 Sum_probs=174.4
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
+..-+|+|+|..|.=|+-.+ +..+.+++....... .++.. .++.|++++|..||.+||.|...|.|+++|+++...+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~-k~~sr-Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR-KTFSR-FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhhhh-hhHHh-hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 46679999999998877664 667777776433221 11222 6789999999999999999999999999998887778
Q ss_pred EEEe-cCCceeecCceeEEEeCC-CCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC-CCEEEEEECCC
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDG 163 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPd-g~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd-g~lLaSgS~Dg 163 (1525)
+.+. |+.++. .+.|+|+ +..+++|++|+.+++||+.+ ..+...+.+|+++|+|.+|+|- +.+++|||-||
T Consensus 104 R~~~ah~apv~-----~~~f~~~d~t~l~s~sDd~v~k~~d~s~--a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 104 RQLYAHQAPVH-----VTKFSPQDNTMLVSGSDDKVVKYWDLST--AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred HHHhhccCcee-----EEEecccCCeEEEecCCCceEEEEEcCC--cEEEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence 8888 999999 9999995 56777888999999999995 3344568899999999999996 45889999999
Q ss_pred CeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccc
Q 000424 164 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRA 243 (1525)
Q Consensus 164 tIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~ 243 (1525)
+||+||+|..-. .+++...| .+|-.+.+-|.+.+++ +++- ..+|+
T Consensus 177 ~vrl~DtR~~~~----------------------~v~elnhg------~pVe~vl~lpsgs~ia------sAgG-n~vkV 221 (487)
T KOG0310|consen 177 KVRLWDTRSLTS----------------------RVVELNHG------CPVESVLALPSGSLIA------SAGG-NSVKV 221 (487)
T ss_pred eEEEEEeccCCc----------------------eeEEecCC------CceeeEEEcCCCCEEE------EcCC-CeEEE
Confidence 999999985321 11111122 1466778888888777 3332 24678
Q ss_pred cccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeee
Q 000424 244 AYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 244 ~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
|....|+..+. ..-.|.-.+.|+ ++.+.+. ..+..- =|+...|.|+.+..-+||
T Consensus 222 WDl~~G~qll~-~~~~H~KtVTcL---~l~s~~~-rLlS~s------------LD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 222 WDLTTGGQLLT-SMFNHNKTVTCL---RLASDST-RLLSGS------------LDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred EEecCCceehh-hhhcccceEEEE---EeecCCc-eEeecc------------cccceEEEEccceEEEEe
Confidence 88887754442 333366655553 3333222 122111 155666767666666665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-15 Score=169.48 Aligned_cols=264 Identities=12% Similarity=0.142 Sum_probs=173.9
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCc--cceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk--~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
---+.|+|++.++..++ ++.+..+|.++.... ....+. +|..+|.-|.|+||+++|++|+.|..+++||..++.+.
T Consensus 227 VWfl~FS~nGkyLAsaS-kD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~ 304 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASAS-KDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR 304 (519)
T ss_pred EEEEEEcCCCeeEeecc-CCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCchHheeeccCCcchhh
Confidence 34689999999975554 688888888765544 122233 59999999999999999999999999999999999999
Q ss_pred EEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeeccc-CcCeEEEEEcCCCCEEEEEECCC
Q 000424 87 YTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG-SQPITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 87 ~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH-~~~VtsIafsPdg~lLaSgS~Dg 163 (1525)
+.+. |..++. +++|.|||..+++|+.|+++..||+... ....+++- ...|.+++..+||.++++...|.
T Consensus 305 ~~y~~~~~~S~~-----sc~W~pDg~~~V~Gs~dr~i~~wdlDgn---~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 305 HLYPSGLGFSVS-----SCAWCPDGFRFVTGSPDRTIIMWDLDGN---ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred hhcccCcCCCcc-----eeEEccCCceeEecCCCCcEEEecCCcc---hhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 9888 568899 9999999999999999999999999842 12112222 24588899999999998888999
Q ss_pred CeeEEEeeeecCCC---CCCCcccc------------ccCCCcccccccc--cccccCCcceecCCCee-EEEEecCCCe
Q 000424 164 SLQVWKTRVIINPN---RPPMQANF------------FEPASIESIDIPR--ILSQQGGEAVYPLPRVR-ALEVHPRLNL 225 (1525)
Q Consensus 164 tIkIWDlr~~~~p~---~~~~~a~~------------f~p~~Iesldi~~--iLs~~gG~~vy~l~~V~-~v~~HP~~Nl 225 (1525)
.|++++.......+ .......+ +.+.++.-+|+.. +.....|.+.-.+ -|. |+..+ +..+
T Consensus 377 ~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f-iIrSCFgg~-~~~f 454 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF-IIRSCFGGG-NDKF 454 (519)
T ss_pred ceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce-EEEeccCCC-Ccce
Confidence 99999876322211 01111111 0111222222221 1111111110000 011 22222 2334
Q ss_pred EEEEecccccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeeh
Q 000424 226 AVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISD 305 (1525)
Q Consensus 226 ial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~d 305 (1525)
++ +|++|.++|+|.++.|+ ++.+|.||...+-+|. .-|- ..+++ +.-..|++++||.
T Consensus 455 ia------SGSED~kvyIWhr~sgk--ll~~LsGHs~~vNcVs---wNP~------~p~m~------ASasDDgtIRIWg 511 (519)
T KOG0293|consen 455 IA------SGSEDSKVYIWHRISGK--LLAVLSGHSKTVNCVS---WNPA------DPEMF------ASASDDGTIRIWG 511 (519)
T ss_pred EE------ecCCCceEEEEEccCCc--eeEeecCCcceeeEEe---cCCC------CHHHh------hccCCCCeEEEec
Confidence 44 99999999999998884 7789999998764431 1111 12321 2223688899986
Q ss_pred hh
Q 000424 306 IA 307 (1525)
Q Consensus 306 i~ 307 (1525)
.+
T Consensus 512 ~~ 513 (519)
T KOG0293|consen 512 PS 513 (519)
T ss_pred CC
Confidence 44
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=160.12 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=149.4
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCc-cceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGR-APTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk-~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
.++|.-.+..+..++ .+.++.+|+. +..+ .......+|.+.|-.++|+|..+ .|++++.|.+|++||++++++...
T Consensus 25 Sv~wn~~g~~lasgs-~dktv~v~n~-e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 25 SVAWNCDGTKLASGS-FDKTVSVWNL-ERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred EEEEcccCceeeecc-cCCceEEEEe-cchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 367777787776555 5889988885 4433 22223345999999999999865 899999999999999999999999
Q ss_pred Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC------c------------------------------
Q 000424 89 LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER------P------------------------------ 131 (1525)
Q Consensus 89 L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~------~------------------------------ 131 (1525)
+. ....++ +.|+|+|.+++.++.|..|...|.++.. .
T Consensus 103 i~~~~eni~------i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 103 IETKGENIN------ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred eeccCcceE------EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 98 444444 8999999999999999999888887520 0
Q ss_pred ---eeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeee-----cCCCCCCCccccccCCC------cc--ccc
Q 000424 132 ---SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI-----INPNRPPMQANFFEPAS------IE--SID 195 (1525)
Q Consensus 132 ---s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~-----~~p~~~~~~a~~f~p~~------Ie--sld 195 (1525)
..+..+++|.....||.|+|+|++||+||.|..+.+||+..+ +...+.++.+--|..++ .+ .+|
T Consensus 177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 000235789999999999999999999999999999999722 11112222222222221 11 122
Q ss_pred ccccccccCCcceecCC---CeeEEEEecCCCeEE
Q 000424 196 IPRILSQQGGEAVYPLP---RVRALEVHPRLNLAV 227 (1525)
Q Consensus 196 i~~iLs~~gG~~vy~l~---~V~~v~~HP~~Nlia 227 (1525)
+.....|+.++.++ ....|+|||+.+++|
T Consensus 257 ---IA~vetGd~~~eI~~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 257 ---IAEVETGDRVWEIPCEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred ---eEecccCCeEEEeeccCCceeEEecCCCceee
Confidence 34455677776664 467899999999988
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-15 Score=181.72 Aligned_cols=249 Identities=16% Similarity=0.143 Sum_probs=179.2
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeec--------------------------------CC--------------
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE--------------------------------GG-------------- 40 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve--------------------------------~g-------------- 40 (1525)
+..--+.|+|++.++..++ .|.-|.+|-.++ ..
T Consensus 268 gaIw~mKFS~DGKyLAsaG-eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAG-EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CcEEEEEeCCCCceeeecC-CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 4667899999999986665 689999998877 10
Q ss_pred ------------ccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeC-
Q 000424 41 ------------RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP- 107 (1525)
Q Consensus 41 ------------k~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsP- 107 (1525)
-.+.....+|.+.|..|.|+. ..+|++++.|.|||||++...+|+++|.|.+.|+ ||+|+|
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVT-----cVaFnPv 420 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVT-----CVAFNPV 420 (712)
T ss_pred cccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeE-----EEEeccc
Confidence 001122236999999999995 4689999999999999999999999999999999 999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCcccccc
Q 000424 108 TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFE 187 (1525)
Q Consensus 108 dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~ 187 (1525)
|.+|++|||-|+.||||++. ...++-..+. ...|++++|.|+|++.+.|+-+|.+++|+.+-... .
T Consensus 421 DDryFiSGSLD~KvRiWsI~--d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~-----------~ 486 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSIS--DKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL-----------V 486 (712)
T ss_pred CCCcEeecccccceEEeecC--cCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeE-----------E
Confidence 88999999999999999999 4555533333 47899999999999999999999999999862211 0
Q ss_pred CCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccc
Q 000424 188 PASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASV 267 (1525)
Q Consensus 188 p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~ 267 (1525)
....+....+.++.. .+|+.+.|+|..+--.+ +.+.|.++|+...++. .++..|+|+++.. +-
T Consensus 487 --------~~~~I~~~~~Kk~~~-~rITG~Q~~p~~~~~vL-----VTSnDSrIRI~d~~~~--~lv~KfKG~~n~~-SQ 549 (712)
T KOG0283|consen 487 --------SDFHIRLHNKKKKQG-KRITGLQFFPGDPDEVL-----VTSNDSRIRIYDGRDK--DLVHKFKGFRNTS-SQ 549 (712)
T ss_pred --------EeeeEeeccCccccC-ceeeeeEecCCCCCeEE-----EecCCCceEEEeccch--hhhhhhcccccCC-cc
Confidence 000111222222222 27899999987652111 3456777777765443 3556788887765 22
Q ss_pred hhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehh
Q 000424 268 LKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDI 306 (1525)
Q Consensus 268 ~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di 306 (1525)
+.+.|.+.|. -++.. .+|+.+.||++
T Consensus 550 ~~Asfs~Dgk-~IVs~------------seDs~VYiW~~ 575 (712)
T KOG0283|consen 550 ISASFSSDGK-HIVSA------------SEDSWVYIWKN 575 (712)
T ss_pred eeeeEccCCC-EEEEe------------ecCceEEEEeC
Confidence 3344444332 23332 27899999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=180.71 Aligned_cols=226 Identities=20% Similarity=0.218 Sum_probs=170.1
Q ss_pred EEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCce
Q 000424 23 FGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAG 101 (1525)
Q Consensus 23 ~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~ 101 (1525)
.+...++++.+|+...+-.....+.+ |.+.|.++++...+..+++|+.|.++|+||..+++|.+++. |.+.+.
T Consensus 222 ~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~----- 295 (537)
T KOG0274|consen 222 KSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR----- 295 (537)
T ss_pred EecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE-----
Confidence 34446777888887665444444555 99999999998878899999999999999999999999999 999999
Q ss_pred eEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCC
Q 000424 102 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPM 181 (1525)
Q Consensus 102 sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~ 181 (1525)
++.. ...++++||.|.+|+|||++ ...++.++.+|...|+++..+ ++++++||.|++|++||++...-
T Consensus 296 ~~~~--~~~~~~sgs~D~tVkVW~v~--n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c------ 363 (537)
T KOG0274|consen 296 CLTI--DPFLLVSGSRDNTVKVWDVT--NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC------ 363 (537)
T ss_pred EEEc--cCceEeeccCCceEEEEecc--CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee------
Confidence 7764 45678889999999999999 466666777899999999998 88999999999999999872211
Q ss_pred ccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeecccc
Q 000424 182 QANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSAR 261 (1525)
Q Consensus 182 ~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~ 261 (1525)
-..+..+.+ +|.++.+.+. +... +++-|+.++.|..+.++ ++..+|++|.
T Consensus 364 ---------------l~sl~gH~~-------~V~sl~~~~~-~~~~------Sgs~D~~IkvWdl~~~~-~c~~tl~~h~ 413 (537)
T KOG0274|consen 364 ---------------LKSLSGHTG-------RVYSLIVDSE-NRLL------SGSLDTTIKVWDLRTKR-KCIHTLQGHT 413 (537)
T ss_pred ---------------eeeecCCcc-------eEEEEEecCc-ceEE------eeeeccceEeecCCchh-hhhhhhcCCc
Confidence 012222221 3455555543 4433 77778999999988775 7888999999
Q ss_pred CCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeee
Q 000424 262 GSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 262 ~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
+.+.+++.- +. . |.+ -.-|+.+++||+.....+.+
T Consensus 414 ~~v~~l~~~-----~~--~-----Lvs------~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 414 SLVSSLLLR-----DN--F-----LVS------SSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred ccccccccc-----cc--e-----eEe------ccccccEEEeecccCceeee
Confidence 987443211 00 1 111 11478899999888888877
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=172.21 Aligned_cols=215 Identities=16% Similarity=0.209 Sum_probs=162.5
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCC-----ccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcC-
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-----RAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIH- 81 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g-----k~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~- 81 (1525)
.+-|+|++++..-+++.+.+..+.+|+.-..+ ..++.+..+|+..|..++|||... +|+++++|+.+.|||++
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 56699999999999999999999999864332 345556667999999999999764 78999999999999999
Q ss_pred -CCcEEEEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCC-CEEE
Q 000424 82 -TYAVHYTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML-RLLV 157 (1525)
Q Consensus 82 -t~k~l~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg-~lLa 157 (1525)
+.++.+... |...|+ |++|+| ++..|++||.|++|++||++.... ....+.+|...|.+|.|+|+. ..|+
T Consensus 260 ~~~~~~~~~~ah~~~vn-----~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 260 NTSKPSHSVKAHSAEVN-----CVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred CCCCCcccccccCCcee-----EEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeE
Confidence 556667777 999999 999999 567788899999999999997533 334678999999999999964 6889
Q ss_pred EEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCC
Q 000424 158 TLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGD 237 (1525)
Q Consensus 158 SgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~D 237 (1525)
|++.|+.+.|||+...-.... +..-.. + -+..|-.++|.+ ..|.++.|+|..+.+.. +.+|
T Consensus 334 SSg~D~rl~vWDls~ig~eq~----~eda~d-g-----ppEllF~HgGH~----~kV~DfsWnp~ePW~I~-----Svae 394 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQS----PEDAED-G-----PPELLFIHGGHT----AKVSDFSWNPNEPWTIA-----SVAE 394 (422)
T ss_pred ecccCCcEEEEeccccccccC----hhhhcc-C-----CcceeEEecCcc----cccccccCCCCCCeEEE-----EecC
Confidence 999999999999974432110 000000 0 112233344433 35899999999887652 5566
Q ss_pred ccccccccccc
Q 000424 238 NIKNRAAYTRE 248 (1525)
Q Consensus 238 d~~~k~~~~~e 248 (1525)
|...-+|.+.+
T Consensus 395 DN~LqIW~~s~ 405 (422)
T KOG0264|consen 395 DNILQIWQMAE 405 (422)
T ss_pred CceEEEeeccc
Confidence 76666676544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-14 Score=152.37 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=150.4
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
....++++|.+..++.+. .+..+.+|+.. .......+. .|...|.+++|+|++.++++++.|+.|++||+.+++.+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 95 YVSSVAFSPDGRILSSSS-RDKTIKVWDVE-TGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred cEEEEEEcCCCCEEEEec-CCCeEEEEECC-CcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 456788999866655544 57888888853 344444555 499999999999998899998889999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
.+. |...+. +++|+|+++.+++++.|+.|++||+++ ......+..|...|.++.|+|++.++++++.|+.|+
T Consensus 172 ~~~~~~~~i~-----~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 244 (289)
T cd00200 172 TLTGHTGEVN-----SVAFSPDGEKLLSSSSDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244 (289)
T ss_pred eEecCccccc-----eEEECCCcCEEEEecCCCcEEEEECCC--CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEE
Confidence 998 888999 999999999999999999999999984 333344557888999999999999999999899999
Q ss_pred EEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccc
Q 000424 167 VWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAA 244 (1525)
Q Consensus 167 IWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~ 244 (1525)
+||++.... . ..+.... ..+..+.|+|+++.++ ++++|..+++|
T Consensus 245 i~~~~~~~~------~---------------~~~~~~~-------~~i~~~~~~~~~~~l~------~~~~d~~i~iw 288 (289)
T cd00200 245 VWDLRTGEC------V---------------QTLSGHT-------NSVTSLAWSPDGKRLA------SGSADGTIRIW 288 (289)
T ss_pred EEEcCCcee------E---------------EEccccC-------CcEEEEEECCCCCEEE------EecCCCeEEec
Confidence 999863110 0 0011111 2478899999988776 66677666655
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=157.69 Aligned_cols=240 Identities=10% Similarity=0.098 Sum_probs=182.9
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
.+.|+-++.+.+++. ++.++++|+...+ ....... +|...|..++.+.+...|++|+.|..|.+||+.++++++.+.
T Consensus 22 avryN~dGnY~ltcG-sdrtvrLWNp~rg-~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCG-SDRTVRLWNPLRG-ALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred EEEEccCCCEEEEcC-CCceEEeeccccc-ceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence 456677788877665 6899999996443 3333333 599999999999999999999999999999999999999999
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|...|+ .|+|+-+...++|||.|.++++||.++.....++++..-.+.|.+|... +..|++||.||++|.||
T Consensus 99 gH~aqVN-----tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 99 GHLAQVN-----TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYD 171 (307)
T ss_pred cccceee-----EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEE
Confidence 999999 9999999999999999999999999986666677787888899998875 45899999999999999
Q ss_pred eeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccC
Q 000424 170 TRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 170 lr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg 249 (1525)
+|.-.. ... +.+ ..|+++.|.+++|..- .+.-|...+......|
T Consensus 172 iR~G~l------~sD-----------------y~g-------~pit~vs~s~d~nc~L------a~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 172 IRKGTL------SSD-----------------YFG-------HPITSVSFSKDGNCSL------ASSLDSTLRLLDKETG 215 (307)
T ss_pred eeccee------ehh-----------------hcC-------CcceeEEecCCCCEEE------Eeeccceeeecccchh
Confidence 983211 111 111 2589999999999866 4455667777776666
Q ss_pred ceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhcee
Q 000424 250 RKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFL 312 (1525)
Q Consensus 250 ~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i 312 (1525)
++...++||.+-.|.+- +++. |+.-....=++|+....||+-..+.+
T Consensus 216 --klL~sYkGhkn~eykld----------c~l~----qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 216 --KLLKSYKGHKNMEYKLD----------CCLN----QSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred --HHHHHhcccccceeeee----------eeec----ccceeEEeccCCceEEEEEeccceee
Confidence 47789999999877641 1110 00000111237888888987665444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=171.88 Aligned_cols=199 Identities=14% Similarity=0.195 Sum_probs=145.8
Q ss_pred CCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCce
Q 000424 17 LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTI 95 (1525)
Q Consensus 17 ~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V 95 (1525)
+...+. +..++.+|++|+. ..-.+..++. +|++.|.++.|. .+.+++|+.|.+|++||.++++++.++- |...|
T Consensus 206 DD~kiV-SGlrDnTikiWD~-n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaV 280 (499)
T KOG0281|consen 206 DDEKIV-SGLRDNTIKIWDK-NSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAV 280 (499)
T ss_pred cchhhh-cccccCceEEecc-ccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhccee
Confidence 334444 4447999999995 3323334444 599999999996 4599999999999999999999999999 99999
Q ss_pred eecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC-ceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeec
Q 000424 96 KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER-PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 174 (1525)
Q Consensus 96 ~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~-~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~ 174 (1525)
. .+.|+. .+++++|.|.++.|||+.+.. -.+-.++-||...|+.+.|+.. +++|+|.|.||++|++.+.-
T Consensus 281 L-----hlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 281 L-----HLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred E-----EEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEecccee
Confidence 9 999874 689999999999999998631 1111335699999999999654 99999999999999986321
Q ss_pred CCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeee
Q 000424 175 NPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLF 254 (1525)
Q Consensus 175 ~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~ 254 (1525)
- -+++.++. -+|-|+.+ .+-++. +|+.|.++++|.-..|. +.
T Consensus 352 f---------------------vRtl~gHk-------RGIAClQY--r~rlvV------SGSSDntIRlwdi~~G~--cL 393 (499)
T KOG0281|consen 352 F---------------------VRTLNGHK-------RGIACLQY--RDRLVV------SGSSDNTIRLWDIECGA--CL 393 (499)
T ss_pred e---------------------ehhhhccc-------ccceehhc--cCeEEE------ecCCCceEEEEeccccH--HH
Confidence 0 01122111 01233333 233444 78888899999877774 66
Q ss_pred eeeccccCCcccc
Q 000424 255 AVLQSARGSSASV 267 (1525)
Q Consensus 255 ~tlq~~~~~~~s~ 267 (1525)
.+|+||...+-++
T Consensus 394 RvLeGHEeLvRci 406 (499)
T KOG0281|consen 394 RVLEGHEELVRCI 406 (499)
T ss_pred HHHhchHHhhhhe
Confidence 7899999987443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=165.21 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=162.9
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC----
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH---- 81 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~---- 81 (1525)
-||..|++...++| |+-+.+-+.+-.+|. +|.+++..+..+ |.+.|++|.||+.+.++++++.|++..||...
T Consensus 148 kDGiW~Vaa~~tqp-i~gtASADhTA~iWs-~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 148 KDGIWHVAADSTQP-ICGTASADHTARIWS-LESGACLATYTG-HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred ccceeeehhhcCCc-ceeecccccceeEEe-eccccceeeecc-cccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 47899999999999 445555678887888 788888887766 99999999999999999999999999999721
Q ss_pred --C----------------------------------CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEE
Q 000424 82 --T----------------------------------YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 124 (1525)
Q Consensus 82 --t----------------------------------~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVW 124 (1525)
. ..++..|. |...|. +..|-..|+.++++|.|++-.+|
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~-----a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS-----ACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE-----ehhhhcCcceeeeeeccccceee
Confidence 0 01344555 888888 89999999999999999999999
Q ss_pred eCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccC
Q 000424 125 DVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQG 204 (1525)
Q Consensus 125 Dv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~g 204 (1525)
|+++ ...+.++.||.+..+.++-||..++++|.|.|.+.++||+|..+. .. +.|. ++.
T Consensus 300 DVEt--ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-----sV-~VFQ--------------GHt 357 (481)
T KOG0300|consen 300 DVET--GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-----SV-AVFQ--------------GHT 357 (481)
T ss_pred eecc--CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc-----ee-eeec--------------ccc
Confidence 9995 455566889999999999999999999999999999999983221 00 0001 100
Q ss_pred CcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccC
Q 000424 205 GEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARG 262 (1525)
Q Consensus 205 G~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~ 262 (1525)
..|+.+.|.-..+++ +++||..+|+|..+.=|.-+ .|+|.-..
T Consensus 358 -------dtVTS~vF~~dd~vV-------SgSDDrTvKvWdLrNMRspl-ATIRtdS~ 400 (481)
T KOG0300|consen 358 -------DTVTSVVFNTDDRVV-------SGSDDRTVKVWDLRNMRSPL-ATIRTDSP 400 (481)
T ss_pred -------cceeEEEEecCCcee-------ecCCCceEEEeeeccccCcc-eeeecCCc
Confidence 134445555444443 79999999999988766555 46665443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-15 Score=165.77 Aligned_cols=263 Identities=16% Similarity=0.211 Sum_probs=188.0
Q ss_pred EEEEEEcCCCC--EEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 9 EVHLALTPLQP--VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 9 e~hLA~hP~~p--~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
-|+|+|+|--| +.+.+...|..-.+-+ .+.+...-.+.+ |++.|.+...+.+-..-|+++.|-+-++||.-++..+
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~-g~tgdwigtfeg-hkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRN-GDTGDWIGTFEG-HKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhcc-CCCCCcEEeeec-cCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 48899998543 5555666665554433 334445555555 9999999999988888899999999999999999999
Q ss_pred EEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 87 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 87 ~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
++|.|..-|. +++|+.|.++|++|+.+..+||+|++..... ...+.+|...|..+-|+...+.|+|.++|++||
T Consensus 95 hsf~hkhivk-----~~af~~ds~~lltgg~ekllrvfdln~p~Ap-p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 95 HSFEHKHIVK-----AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-PKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhheee-----eEEecccchhhhccchHHHhhhhhccCCCCC-chhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 9999999999 9999999999999999999999999964211 123569999999999999989999999999999
Q ss_pred EEEeeeecCC-----CCCCCccccccCCC----------cccccccccccccCCcceecCC-CeeEEEEecCCCeEEEEe
Q 000424 167 VWKTRVIINP-----NRPPMQANFFEPAS----------IESIDIPRILSQQGGEAVYPLP-RVRALEVHPRLNLAVLLF 230 (1525)
Q Consensus 167 IWDlr~~~~p-----~~~~~~a~~f~p~~----------Iesldi~~iLs~~gG~~vy~l~-~V~~v~~HP~~Nlial~F 230 (1525)
+||.|+.... +.+...... .+++ |.-+|... .+--+-|.+| +|.....||+.+...
T Consensus 169 LWD~rTgt~v~sL~~~s~VtSlEv-s~dG~ilTia~gssV~Fwdaks----f~~lKs~k~P~nV~SASL~P~k~~fV--- 240 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLEFNSPVTSLEV-SQDGRILTIAYGSSVKFWDAKS----FGLLKSYKMPCNVESASLHPKKEFFV--- 240 (334)
T ss_pred EEEeccCcEEEEEecCCCCcceee-ccCCCEEEEecCceeEEecccc----ccceeeccCccccccccccCCCceEE---
Confidence 9999843211 111111111 1110 10011000 0000123334 588899999988766
Q ss_pred cccccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhh
Q 000424 231 ANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIA 307 (1525)
Q Consensus 231 ~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~ 307 (1525)
.+++|.+.++.....|..... --++|.+.+.+ .+|++.|-. ... =++|++++||.++
T Consensus 241 ---aGged~~~~kfDy~TgeEi~~-~nkgh~gpVhc---VrFSPdGE~-yAs------------GSEDGTirlWQt~ 297 (334)
T KOG0278|consen 241 ---AGGEDFKVYKFDYNTGEEIGS-YNKGHFGPVHC---VRFSPDGEL-YAS------------GSEDGTIRLWQTT 297 (334)
T ss_pred ---ecCcceEEEEEeccCCceeee-cccCCCCceEE---EEECCCCce-eec------------cCCCceEEEEEec
Confidence 789999999888888854443 14899999866 577777762 112 2379999999754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=166.76 Aligned_cols=259 Identities=17% Similarity=0.200 Sum_probs=185.7
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceE---Ec-----c----CCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK---IK-----T----DLKKPIVNLACHPRLPVLYVAYADGLIRA 77 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~---ik-----~----~H~~~V~sIaf~P~g~~LaSGs~DgtIrI 77 (1525)
+.-+|.|...-+|.+...+.+..+|...+....... ++ + .-.+.|++++|+.+|..||+|+.||.+||
T Consensus 182 ~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri 261 (524)
T KOG0273|consen 182 FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI 261 (524)
T ss_pred EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence 445788888877777777888888887763221111 00 0 12367999999999999999999999999
Q ss_pred EEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEE
Q 000424 78 YNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLL 156 (1525)
Q Consensus 78 WDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lL 156 (1525)
|+.. +..+.+|. |.++|. ++.|+.+|.||++++.|+++.+||..+. ...+.+.-|+.+-..|.|-.+ .-|
T Consensus 262 w~~~-G~l~~tl~~HkgPI~-----slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~s~~~lDVdW~~~-~~F 332 (524)
T KOG0273|consen 262 WNKD-GNLISTLGQHKGPIF-----SLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFHSAPALDVDWQSN-DEF 332 (524)
T ss_pred EecC-chhhhhhhccCCceE-----EEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeeccCCccceEEecC-ceE
Confidence 9874 66778888 999999 9999999999999999999999999853 333335577777677888766 468
Q ss_pred EEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccC
Q 000424 157 VTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGG 236 (1525)
Q Consensus 157 aSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~ 236 (1525)
++++.|+.|+|+.+..... . ..+.++.| .|+.+.|.|++.+++ +++
T Consensus 333 ~ts~td~~i~V~kv~~~~P-----~----------------~t~~GH~g-------~V~alk~n~tg~LLa------S~S 378 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRP-----V----------------KTFIGHHG-------EVNALKWNPTGSLLA------SCS 378 (524)
T ss_pred eecCCCceEEEEEecCCCc-----c----------------eeeecccC-------ceEEEEECCCCceEE------Eec
Confidence 8999999999998752211 0 01122332 578999999999999 999
Q ss_pred CcccccccccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeeeee
Q 000424 237 DNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHF 316 (1525)
Q Consensus 237 Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s~~ 316 (1525)
||.+.|+|.+-.+. .+.-|+.|.-..|++ +.++.|. +..+ ...++....-..|+++++||+-+-.++++ |
T Consensus 379 dD~TlkiWs~~~~~--~~~~l~~Hskei~t~---~wsp~g~---v~~n-~~~~~~l~sas~dstV~lwdv~~gv~i~~-f 448 (524)
T KOG0273|consen 379 DDGTLKIWSMGQSN--SVHDLQAHSKEIYTI---KWSPTGP---VTSN-PNMNLMLASASFDSTVKLWDVESGVPIHT-L 448 (524)
T ss_pred CCCeeEeeecCCCc--chhhhhhhccceeeE---eecCCCC---ccCC-CcCCceEEEeecCCeEEEEEccCCceeEe-e
Confidence 99999999865443 445688888666553 2222222 1000 11222233344699999999999999998 5
Q ss_pred ccccc
Q 000424 317 MEGHA 321 (1525)
Q Consensus 317 ~d~~~ 321 (1525)
|+.+.
T Consensus 449 ~kH~~ 453 (524)
T KOG0273|consen 449 MKHQE 453 (524)
T ss_pred ccCCC
Confidence 44433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-15 Score=181.61 Aligned_cols=214 Identities=14% Similarity=0.180 Sum_probs=154.5
Q ss_pred EEcCCCCEEEEEEeccceEEEEEeecCC-ccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 13 A~hP~~p~Vf~s~~~d~sV~v~dtve~g-k~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
.|+..-..++++......|.+|+.-..+ .+....+.+|+..|.+++||+..+ +|++|+.||+||+||++..+-..++.
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 3443334444555567788888853322 222234446999999999999987 68999999999999999998888888
Q ss_pred -cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEE
Q 000424 91 -LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIW 168 (1525)
...+|+ .|+|+| .+.+++++.+.|.++.||++.. ..+..-+.+|.++|.|+.|||++.+||||+.|++|+||
T Consensus 174 ~nSESiR-----DV~fsp~~~~~F~s~~dsG~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 174 SNSESIR-----DVKFSPGYGNKFASIHDSGYLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccchhhh-----ceeeccCCCceEEEecCCceEEEeeccCc-hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 788999 999999 6788999999999999999964 22222356999999999999999999999999999999
Q ss_pred EeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCC-eEEEEecccccCCcccccccccc
Q 000424 169 KTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLN-LAVLLFANFTGGDNIKNRAAYTR 247 (1525)
Q Consensus 169 Dlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~N-lial~F~~~s~~Dd~~~k~~~~~ 247 (1525)
|+...... .+. ++.....|..|.|-|... .+| ..+-.+|..+.+|.-+
T Consensus 248 d~t~~~~~---~~~------------------------tInTiapv~rVkWRP~~~~hLA----tcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 248 DMTDSRAK---PKH------------------------TINTIAPVGRVKWRPARSYHLA----TCSMVVDTSVHVWDVR 296 (839)
T ss_pred eccCCCcc---cee------------------------EEeecceeeeeeeccCccchhh----hhhccccceEEEEeec
Confidence 98631110 000 011122457788888743 233 3366778888888643
Q ss_pred cCceeeeeeeccccCCc
Q 000424 248 EGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 248 eg~~q~~~tlq~~~~~~ 264 (1525)
-- ..=+.++..|.+.+
T Consensus 297 RP-YIP~~t~~eH~~~v 312 (839)
T KOG0269|consen 297 RP-YIPYATFLEHTDSV 312 (839)
T ss_pred cc-cccceeeeccCccc
Confidence 21 22345677777765
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=174.92 Aligned_cols=150 Identities=15% Similarity=0.236 Sum_probs=135.8
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
-++++|....+.+++ .|++.++|+. +...-.-.+.+ |+..|.++.|+|.+..++++|.|+|||||.+.++.|+++|+
T Consensus 468 ~Vaia~ndkLiAT~S-qDktaKiW~l-e~~~l~~vLsG-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGS-QDKTAKIWDL-EQLRLLGVLSG-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE 544 (775)
T ss_pred ceEecCCCceEEecc-cccceeeecc-cCceEEEEeeC-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec
Confidence 478899988876666 6999999994 55555556666 99999999999999999999999999999999999999999
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|...|. -+.|-.++..|+|++.||.+|+|++.+ ..|...+++|++.|++++-+|.+.+++||+.||.|.+|.
T Consensus 545 GH~~aVl-----ra~F~~~~~qliS~~adGliKlWnikt--~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 545 GHTSAVL-----RASFIRNGKQLISAGADGLIKLWNIKT--NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CccceeE-----eeeeeeCCcEEEeccCCCcEEEEeccc--hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999 999999999999999999999999995 566667899999999999999999999999999999996
Q ss_pred e
Q 000424 170 T 170 (1525)
Q Consensus 170 l 170 (1525)
=
T Consensus 618 D 618 (775)
T KOG0319|consen 618 D 618 (775)
T ss_pred c
Confidence 3
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=159.92 Aligned_cols=217 Identities=18% Similarity=0.283 Sum_probs=156.8
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecC-CccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEG-GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~-gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
-.|+|||.... +.+.++|.++++++.... .+..+++.. ...+|++|.|||.|.++++|.+--++|+||+.+.+|...
T Consensus 176 n~l~FHPre~I-LiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 176 NDLDFHPRETI-LISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cceeecchhhe-EEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 35899997765 466668999999996433 234445554 578999999999999999999999999999999998876
Q ss_pred Ee----cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceee-EeecccC-cCeEEEEEcCCCCEEEEEECC
Q 000424 89 LQ----LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI-GIIQVGS-QPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 89 L~----H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i-~il~gH~-~~VtsIafsPdg~lLaSgS~D 162 (1525)
-. |.+.|+ +|.|++.++..+++|.||.||+||--+. .++ .+-.+|. ..|.+..|..+++|++|.+.|
T Consensus 254 anPd~qht~ai~-----~V~Ys~t~~lYvTaSkDG~IklwDGVS~--rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 254 ANPDDQHTGAIT-----QVRYSSTGSLYVTASKDGAIKLWDGVSN--RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred cCccccccccee-----EEEecCCccEEEEeccCCcEEeeccccH--HHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 55 889999 9999999999999999999999997743 222 2334664 568899999999999999999
Q ss_pred CCeeEEEeeee------cC-----CCCCCCcccccc-------CC----CcccccccccccccCCcc--eecC---CCee
Q 000424 163 GSLQVWKTRVI------IN-----PNRPPMQANFFE-------PA----SIESIDIPRILSQQGGEA--VYPL---PRVR 215 (1525)
Q Consensus 163 gtIkIWDlr~~------~~-----p~~~~~~a~~f~-------p~----~Iesldi~~iLs~~gG~~--vy~l---~~V~ 215 (1525)
.+|++|.+.+- .. ..++..++.|-. |+ .+.++|-. .++. ..++ ..++
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR------tadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR------TADRVALLSLGHNGAVR 400 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc------chhhhhhcccCCCCCce
Confidence 99999998621 00 011122222211 11 12222211 1111 1111 1367
Q ss_pred EEEEecCCCeEEEEecccccCCcccccccccc
Q 000424 216 ALEVHPRLNLAVLLFANFTGGDNIKNRAAYTR 247 (1525)
Q Consensus 216 ~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~ 247 (1525)
++...|.+.... +++||-..|.|+++
T Consensus 401 ~i~HSP~~p~Fm------TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 401 WIVHSPVEPAFM------TCSDDFRARFWYRR 426 (430)
T ss_pred EEEeCCCCCcee------eecccceeeeeeec
Confidence 888888877655 88999999999876
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=158.69 Aligned_cols=229 Identities=14% Similarity=0.187 Sum_probs=167.8
Q ss_pred CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEEcCCCcE----EEEEe
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP---VLYVAYADGLIRAYNIHTYAV----HYTLQ 90 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~---~LaSGs~DgtIrIWDi~t~k~----l~tL~ 90 (1525)
..+||.|+. +..+.+|+. .|+....+.+ |.++|.+++|.-..+ .|++++.|.++++|-+..+.. ++.-+
T Consensus 115 ~~~IltgsY-Dg~~riWd~--~Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 115 SKWILTGSY-DGTSRIWDL--KGKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred CceEEEeec-CCeeEEEec--CCceEEEEec-CCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 356777765 778888874 4555555555 999999999975544 599999999999999876643 23334
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC-----------------------CceeeEeecccCcCeEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-----------------------RPSMIGIIQVGSQPITS 146 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~-----------------------~~s~i~il~gH~~~Vts 146 (1525)
|...|- +|+..++|..+++||.|.+|+||+..+. .+....++.+|+.+|.+
T Consensus 191 GHk~~V~-----sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~ 265 (423)
T KOG0313|consen 191 GHKRSVD-----SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS 265 (423)
T ss_pred cccccee-----EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence 999999 9999999999999999999999993210 11222467899999999
Q ss_pred EEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeE
Q 000424 147 VAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLA 226 (1525)
Q Consensus 147 IafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nli 226 (1525)
|.|++ ...+.|+|.|.||+.||+.+..... .+ ..-..+++++.||..+++
T Consensus 266 V~w~d-~~v~yS~SwDHTIk~WDletg~~~~---------------------~~--------~~~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 266 VVWSD-ATVIYSVSWDHTIKVWDLETGGLKS---------------------TL--------TTNKSLNCISYSPLSKLL 315 (423)
T ss_pred EEEcC-CCceEeecccceEEEEEeeccccee---------------------ee--------ecCcceeEeeccccccee
Confidence 99998 5678999999999999987432200 00 001246889999999999
Q ss_pred EEEecccccCCcccccccccccCce-eeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeeh
Q 000424 227 VLLFANFTGGDNIKNRAAYTREGRK-QLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISD 305 (1525)
Q Consensus 227 al~F~~~s~~Dd~~~k~~~~~eg~~-q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~d 305 (1525)
+ +++.|..++.|..|.|.. --..+|-||.+.+.++ +.++....-.+. -+-|++..+||
T Consensus 316 ~------~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv---kwsp~~~~~~~S------------~S~D~t~klWD 374 (423)
T KOG0313|consen 316 A------SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV---KWSPTNEFQLVS------------GSYDNTVKLWD 374 (423)
T ss_pred e------ecCCCCceeecCCCCCCCceeEEeeecchhhhhhe---ecCCCCceEEEE------------EecCCeEEEEE
Confidence 9 899999999999887643 3345788999987553 333333321121 12488999999
Q ss_pred h
Q 000424 306 I 306 (1525)
Q Consensus 306 i 306 (1525)
.
T Consensus 375 v 375 (423)
T KOG0313|consen 375 V 375 (423)
T ss_pred e
Confidence 4
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=150.81 Aligned_cols=222 Identities=15% Similarity=0.183 Sum_probs=152.9
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEec
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL 91 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H 91 (1525)
|.++-.+.++| ++.+|.+..+|....+.+.-+ ..+|++.|.+++.+-+...+++|+.|.++++||..+++++.+++.
T Consensus 16 iKyN~eGDLlF-scaKD~~~~vw~s~nGerlGt--y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 16 IKYNREGDLLF-SCAKDSTPTVWYSLNGERLGT--YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred EEecCCCcEEE-EecCCCCceEEEecCCceeee--ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec
Confidence 45566677665 555789999998766544322 335999999999999999999999999999999999988776653
Q ss_pred CCceee-------------------------------------------------cCceeEEEeCCCCEEEEEeCCCcEE
Q 000424 92 DNTIKL-------------------------------------------------LGAGAFAFHPTLEWLFVGDRRGTLL 122 (1525)
Q Consensus 92 ~~~V~~-------------------------------------------------~g~~sVaFsPdg~~LaSgS~DgtIr 122 (1525)
..+|+. +-+...-|.|-+++|++|..||.|.
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is 172 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSIS 172 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEE
Confidence 222220 0012455777777888888899999
Q ss_pred EEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCC----CCCCCccccccC--------CC
Q 000424 123 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINP----NRPPMQANFFEP--------AS 190 (1525)
Q Consensus 123 VWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p----~~~~~~a~~f~p--------~~ 190 (1525)
+||.++. ...+...+.|+..|+.+.++++..+++|+|.|.+-++||++..... ...++.+..+.| .+
T Consensus 173 ~~da~~g-~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 173 IYDARTG-KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred EEEcccC-ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCC
Confidence 9999963 3444445679999999999999999999999999999999832110 011122111122 33
Q ss_pred cccccccccccccC---------------CcceecCCCeeEEEEecCCCeEEEEecccccCCcccccc
Q 000424 191 IESIDIPRILSQQG---------------GEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRA 243 (1525)
Q Consensus 191 Iesldi~~iLs~~g---------------G~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~ 243 (1525)
++..|+...-...| |..+-.+-.|+.++|||++-..+ ++++|.-+++
T Consensus 252 qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs------SGGEDG~VR~ 313 (327)
T KOG0643|consen 252 QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS------SGGEDGYVRL 313 (327)
T ss_pred ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc------cCCCCceEEE
Confidence 44444443322111 11111234689999999998877 8999987663
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-12 Score=152.90 Aligned_cols=140 Identities=14% Similarity=0.196 Sum_probs=109.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 000424 52 KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 130 (1525)
Q Consensus 52 ~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~ 130 (1525)
+-|..++|-|+|..|+.+..| .+.+||...+..+.+++ |.+.|. ||+|+.||+.++||+.|..|.+|+-.-+
T Consensus 13 hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVy-----cVAys~dGkrFASG~aDK~VI~W~~klE- 85 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVY-----CVAYAKDGKRFASGSADKSVIIWTSKLE- 85 (1081)
T ss_pred cchheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEE-----EEEEccCCceeccCCCceeEEEeccccc-
Confidence 378999999999988777655 58899999999999999 999999 9999999999999999999999986632
Q ss_pred ceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceec
Q 000424 131 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYP 210 (1525)
Q Consensus 131 ~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~ 210 (1525)
. .. .-.|++.|.|++|+|-...|+|||.. ..-+|...... +.. -.+
T Consensus 86 G-~L--kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~------------------------V~K------~ks 131 (1081)
T KOG1538|consen 86 G-IL--KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS------------------------VSK------HKS 131 (1081)
T ss_pred c-ee--eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh------------------------HHh------hhh
Confidence 1 11 12699999999999999999999875 35567542100 000 011
Q ss_pred CCCeeEEEEecCCCeEEEEecc
Q 000424 211 LPRVRALEVHPRLNLAVLLFAN 232 (1525)
Q Consensus 211 l~~V~~v~~HP~~Nlial~F~~ 232 (1525)
..|+.+++|.-++...++...+
T Consensus 132 s~R~~~CsWtnDGqylalG~~n 153 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFN 153 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccC
Confidence 2478899999888888876544
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=174.16 Aligned_cols=156 Identities=13% Similarity=0.221 Sum_probs=129.6
Q ss_pred cEEEEEEcCCCCEEEEEEe-ccceEEEEEeecC-----------CccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 000424 8 TEVHLALTPLQPVVFFGFH-RRMSVTVVGTVEG-----------GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 75 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~-~d~sV~v~dtve~-----------gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtI 75 (1525)
..+.+++||+...+-++.+ .|.++.+|..-.- .+....+.. |.+.|.|+.|+|+|.+||+|++|+.|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEeeccCcceE
Confidence 4789999999988766652 2445556654110 122233444 99999999999999999999999999
Q ss_pred EEEEcCC------------------CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEe
Q 000424 76 RAYNIHT------------------YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGI 136 (1525)
Q Consensus 76 rIWDi~t------------------~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~i 136 (1525)
-||+... +++..++. |...|. .|+|+|++.+++++|.|++|.|||..+. ..+..
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-----Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~v 166 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-----DVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKV 166 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccc-----eeccCCCccEEEEecccceEEEEccccc--eeeee
Confidence 9998661 24677888 999999 9999999999999999999999999965 55567
Q ss_pred ecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 137 IQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 137 l~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+.+|...|-.++|.|-|+||+|-|+|++|+||++.
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 88999999999999999999999999999999965
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=154.95 Aligned_cols=158 Identities=17% Similarity=0.294 Sum_probs=128.4
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEe-------ecC----------------CccceEEccCCCCCeEEEEEcCCCCEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGT-------VEG----------------GRAPTKIKTDLKKPIVNLACHPRLPVL 66 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dt-------ve~----------------gk~~t~ik~~H~~~V~sIaf~P~g~~L 66 (1525)
..+++.+++.. |++++-|.++.+|+. .|+ .+.+.....+|.++|.++.|++ ...+
T Consensus 197 ~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVI 274 (423)
T ss_pred eEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCce
Confidence 34566666665 455557899999981 111 1233344456999999999998 6689
Q ss_pred EEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceee-EeecccCcCeE
Q 000424 67 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI-GIIQVGSQPIT 145 (1525)
Q Consensus 67 aSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i-~il~gH~~~Vt 145 (1525)
++++.|.+||.||+.++..+.++.....++ |++++|....|++||.|..+++||-++...+++ ..+.+|.+.|.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~-----~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLN-----CISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS 349 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCccee-----EeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh
Confidence 999999999999999999999999888999 999999999999999999999999997533332 45669999999
Q ss_pred EEEEcCCCC-EEEEEECCCCeeEEEeeeec
Q 000424 146 SVAWLPMLR-LLVTLCRDGSLQVWKTRVII 174 (1525)
Q Consensus 146 sIafsPdg~-lLaSgS~DgtIkIWDlr~~~ 174 (1525)
++.|||... .|+|+|.|+++++||+|...
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999999654 68999999999999999543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=150.41 Aligned_cols=119 Identities=16% Similarity=0.231 Sum_probs=100.5
Q ss_pred cCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k 84 (1525)
+.|+...|+|+|....++++.+.|.+|++|+.-..+...-+.-..|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 57899999999987777778888999999997554443333334599999999999999999999999999999999996
Q ss_pred EEEEEecCCceeecCceeEEEeCCCC--EEEEEeCCCcEEEEeCCC
Q 000424 85 VHYTLQLDNTIKLLGAGAFAFHPTLE--WLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 85 ~l~tL~H~~~V~~~g~~sVaFsPdg~--~LaSgS~DgtIrVWDv~t 128 (1525)
+...-.|..+|+ ++.|-+... .|++||.|.|||.||++.
T Consensus 106 ~~~v~~Hd~pvk-----t~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 106 VSQVAAHDAPVK-----TCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred eeeeeeccccee-----EEEEecCCCcceeEecccccceeecccCC
Confidence 554444999999 999987655 899999999999999984
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-13 Score=166.89 Aligned_cols=173 Identities=17% Similarity=0.253 Sum_probs=138.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCCcEEEEEcCC------------CcEEEEEe-cCCceeecCceeEEEeCCCCEEEE
Q 000424 50 LKKPIVNLACHPRLPVLYVAY--ADGLIRAYNIHT------------YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFV 114 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs--~DgtIrIWDi~t------------~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaS 114 (1525)
+.+.|.+|++||++..+++|+ .|+.++||+... .+.+.++. |...|+ ||.|+|||++|++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~-----CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVN-----CVRFSPDGSYLAS 86 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCcee-----EEEECCCCCeEee
Confidence 467799999999999999999 999999998642 23456666 999999 9999999999999
Q ss_pred EeCCCcEEEEeCCC----C------------CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCC
Q 000424 115 GDRRGTLLAWDVSI----E------------RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNR 178 (1525)
Q Consensus 115 gS~DgtIrVWDv~t----~------------~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~ 178 (1525)
||+|+.|.||+... . ....+.++.+|...|..++|+|++.+|+|+|.|++|.|||.++...
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~--- 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL--- 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee---
Confidence 99999999998872 0 1234456889999999999999999999999999999999875411
Q ss_pred CCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeec
Q 000424 179 PPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQ 258 (1525)
Q Consensus 179 ~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq 258 (1525)
..++..+. .-|+.+.|.|.+-++| +-+||.++|+|+..+ +++..++.
T Consensus 164 ------------------~~vl~~H~-------s~VKGvs~DP~Gky~A------SqsdDrtikvwrt~d--w~i~k~It 210 (942)
T KOG0973|consen 164 ------------------LKVLRGHQ-------SLVKGVSWDPIGKYFA------SQSDDRTLKVWRTSD--WGIEKSIT 210 (942)
T ss_pred ------------------eeeeeccc-------ccccceEECCccCeee------eecCCceEEEEEccc--ceeeEeec
Confidence 11222222 1367899999999999 899999999998544 55555666
Q ss_pred cccCC
Q 000424 259 SARGS 263 (1525)
Q Consensus 259 ~~~~~ 263 (1525)
.++..
T Consensus 211 ~pf~~ 215 (942)
T KOG0973|consen 211 KPFEE 215 (942)
T ss_pred cchhh
Confidence 66654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=150.52 Aligned_cols=205 Identities=14% Similarity=0.198 Sum_probs=150.4
Q ss_pred EcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEEcCCC--cE-EEE
Q 000424 14 LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR--LPVLYVAYADGLIRAYNIHTY--AV-HYT 88 (1525)
Q Consensus 14 ~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~--g~~LaSGs~DgtIrIWDi~t~--k~-l~t 88 (1525)
.||..-.++.+++-+..|.+|..-.+.+........|+..|++|+|.|. |-.|++||.||+|.|.++++. -. .+.
T Consensus 65 ahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki 144 (299)
T KOG1332|consen 65 AHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI 144 (299)
T ss_pred cccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh
Confidence 3788778888888899998888544433333444569999999999886 458999999999999997754 22 233
Q ss_pred Ee-cCCceeecCceeEEEeCC---C-----------CEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCC
Q 000424 89 LQ-LDNTIKLLGAGAFAFHPT---L-----------EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 153 (1525)
Q Consensus 89 L~-H~~~V~~~g~~sVaFsPd---g-----------~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg 153 (1525)
.. |.-.|+ +|+|.|- | +.|+||+.|..|+||+..+..-.+-.++.+|.+.|+.++|.|.-
T Consensus 145 ~~aH~~Gvn-----sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 145 VFAHEIGVN-----SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred hhccccccc-----eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc
Confidence 33 999999 9999885 4 46999999999999998863223334477999999999999963
Q ss_pred ----CEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEE
Q 000424 154 ----RLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLL 229 (1525)
Q Consensus 154 ----~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~ 229 (1525)
.+|+|||.||+|.||..+...++-+.. .|.. ++ ..++.+.|.+++|+++
T Consensus 220 gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t------------------ll~~------f~-~~~w~vSWS~sGn~La-- 272 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIWTKDEEYEPWKKT------------------LLEE------FP-DVVWRVSWSLSGNILA-- 272 (299)
T ss_pred CCCceeeEEecCCCcEEEEEecCccCccccc------------------cccc------CC-cceEEEEEeccccEEE--
Confidence 589999999999999876222211110 1110 00 1367899999999999
Q ss_pred ecccccCCccccccccc-ccCceeee
Q 000424 230 FANFTGGDNIKNRAAYT-REGRKQLF 254 (1525)
Q Consensus 230 F~~~s~~Dd~~~k~~~~-~eg~~q~~ 254 (1525)
.++.|.+++.|+. .+|+++.+
T Consensus 273 ----Vs~GdNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 273 ----VSGGDNKVTLWKENVDGKWEEV 294 (299)
T ss_pred ----EecCCcEEEEEEeCCCCcEEEc
Confidence 5666777777775 45666664
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=156.66 Aligned_cols=210 Identities=19% Similarity=0.226 Sum_probs=158.9
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
.-.+...|..+.+++|. .+.+..+++ .+.+.....+++ |...|.++.+||+...+++++.|..|++|..........
T Consensus 222 i~ald~~~s~~~ilTGG-~d~~av~~d-~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGG-EDKTAVLFD-KPSNQILATLKG-HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred eeEEeecCCCCcceecC-CCCceEEEe-cchhhhhhhccC-cceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 33455556667887776 577777766 455555555555 999999999999999999999999999999887777667
Q ss_pred Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeE
Q 000424 89 LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV 167 (1525)
Q Consensus 89 L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkI 167 (1525)
.. |+.+|+ .+..||.|.||+++|.|++....|+++...-.+..-+...-.+++++|||||-+|.+|+.|+.|+|
T Consensus 299 ~~~h~~~V~-----~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 299 SRPHEEPVT-----GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccce-----eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 77 999999 999999999999999999999999996422222111112234899999999999999999999999
Q ss_pred EEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccc
Q 000424 168 WKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTR 247 (1525)
Q Consensus 168 WDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~ 247 (1525)
||++..-+ .+.| . .+. ..|+.+.|.-++-+.+ ++.||..++.|+.|
T Consensus 374 wdlks~~~------~a~F-p--------------ght-------~~vk~i~FsENGY~La------t~add~~V~lwDLR 419 (506)
T KOG0289|consen 374 WDLKSQTN------VAKF-P--------------GHT-------GPVKAISFSENGYWLA------TAADDGSVKLWDLR 419 (506)
T ss_pred EEcCCccc------cccC-C--------------CCC-------CceeEEEeccCceEEE------EEecCCeEEEEEeh
Confidence 99863211 1111 1 111 2578899998888888 78889889999988
Q ss_pred cCceeeeeeeccccC
Q 000424 248 EGRKQLFAVLQSARG 262 (1525)
Q Consensus 248 eg~~q~~~tlq~~~~ 262 (1525)
.-+ .+.+++....
T Consensus 420 Kl~--n~kt~~l~~~ 432 (506)
T KOG0289|consen 420 KLK--NFKTIQLDEK 432 (506)
T ss_pred hhc--ccceeecccc
Confidence 654 5566666553
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=152.63 Aligned_cols=114 Identities=23% Similarity=0.379 Sum_probs=96.5
Q ss_pred CCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCC-CcEEEE-Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEe
Q 000424 50 LKKPIVNLACHPR-LPVLYVAYADGLIRAYNIHT-YAVHYT-LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 125 (1525)
Q Consensus 50 H~~~V~sIaf~P~-g~~LaSGs~DgtIrIWDi~t-~k~l~t-L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWD 125 (1525)
-.+.|.+|+|+|. ..+++.||.|++||+|+++. +...-. .. |.++|. +++|+.||..+++|+.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL-----~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL-----DVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE-----EEEEccCCceEEeeccCCceEEEE
Confidence 4678999999994 45677999999999999876 333322 23 999999 999999999999999999999999
Q ss_pred CCCCCceeeEeecccCcCeEEEEEcCCCC--EEEEEECCCCeeEEEee
Q 000424 126 VSIERPSMIGIIQVGSQPITSVAWLPMLR--LLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 126 v~t~~~s~i~il~gH~~~VtsIafsPdg~--lLaSgS~DgtIkIWDlr 171 (1525)
+.+..... ...|..+|.++.|-+... .|+|||.|+|||.||.|
T Consensus 101 L~S~Q~~~---v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 101 LASGQVSQ---VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred ccCCCeee---eeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 99753322 348999999999988665 89999999999999998
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=162.04 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=125.9
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
++|++++..++.++ -|..+++||+ |.|++...+.. ...+.++.|||++ +.|++|..|+.|+.||+++++.++.+.
T Consensus 264 ~~~s~~g~~fLS~s-fD~~lKlwDt-ETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 264 ASFNNCGTSFLSAS-FDRFLKLWDT-ETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred hhccccCCeeeeee-cceeeeeecc-ccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 56777777765555 5899999995 77787777655 4678999999999 689999999999999999999999999
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC----------ceee-------------------------
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER----------PSMI------------------------- 134 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~----------~s~i------------------------- 134 (1525)
|...|. .+.|-++|+.+++.++|++++||+.+... .++.
T Consensus 340 ~hLg~i~-----~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 340 RHLGAIL-----DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred hhhhhee-----eeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 999999 99999999999999999999999987520 0000
Q ss_pred ---------EeecccC--cCeEEEEEcCCCCEEEEEECCCCeeEEEeeeec
Q 000424 135 ---------GIIQVGS--QPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 174 (1525)
Q Consensus 135 ---------~il~gH~--~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~ 174 (1525)
..+.+|. ++-..+.|||||.+|+||+.||.+.+||.++..
T Consensus 415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 0123553 234568899999999999999999999998543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=166.12 Aligned_cols=155 Identities=15% Similarity=0.269 Sum_probs=137.3
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
|.-.-++++|++.++.++.- +.+|+++. .+.-+-...+.+ |+=||.|++.+|++.++++||.|.+||||-+.=|.|.
T Consensus 509 ddvL~v~~Spdgk~LaVsLL-dnTVkVyf-lDtlKFflsLYG-HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLL-DNTVKVYF-LDTLKFFLSLYG-HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred ccEEEEEEcCCCcEEEEEec-cCeEEEEE-ecceeeeeeecc-cccceeEEeccCCcCeEEeccCCCceEEeccccchhh
Confidence 45567889999999999984 78888776 344443444454 9999999999999999999999999999999999999
Q ss_pred EEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
+.|- |+++|+ +|.|.|+...++++|.|+.|+-||-. ...++..+.+|...|+|++.+|+|.+++|+|.|.+|
T Consensus 586 KS~fAHdDSvm-----~V~F~P~~~~FFt~gKD~kvKqWDg~--kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 586 KSFFAHDDSVM-----SVQFLPKTHLFFTCGKDGKVKQWDGE--KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred hhhhcccCcee-----EEEEcccceeEEEecCcceEEeechh--hhhhheeeccchheeeeeEEcCCCCeEEeccCCcee
Confidence 9999 999999 99999999999999999999999998 456667788999999999999999999999999999
Q ss_pred eEEEee
Q 000424 166 QVWKTR 171 (1525)
Q Consensus 166 kIWDlr 171 (1525)
++|.-.
T Consensus 659 RlwE~t 664 (888)
T KOG0306|consen 659 RLWERT 664 (888)
T ss_pred Eeeecc
Confidence 999754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=150.97 Aligned_cols=155 Identities=12% Similarity=0.221 Sum_probs=129.6
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
-+.+.+.+.....|+.++-|.+|++|+- .....+..+++ |..-|...+|||.. ++|+++|.|++.++||++......
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~-~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDP-NRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecC-CCCcceEeecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee
Confidence 4678889988888888889999999985 33445555555 99999999999975 589999999999999988654444
Q ss_pred EEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCC-CEEEEEECCCC
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML-RLLVTLCRDGS 164 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg-~lLaSgS~Dgt 164 (1525)
.+. |...+. |+.|+. +...+++|+.|+.||+||++.. +..+..+.+|.-.|+.+.|||.. .+|+|||-|.|
T Consensus 185 ~i~ah~~Eil-----~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 185 SIEAHNSEIL-----CCDWSKYNHNVLATGGVDNLVRGWDIRNL-RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred EEEeccceeE-----eecccccCCcEEEecCCCceEEEEehhhc-cccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 477 999999 999998 6678889999999999999974 33344578999999999999964 58999999999
Q ss_pred eeEEEee
Q 000424 165 LQVWKTR 171 (1525)
Q Consensus 165 IkIWDlr 171 (1525)
++|||..
T Consensus 259 ~riw~~~ 265 (311)
T KOG0277|consen 259 VRIWDPE 265 (311)
T ss_pred EEecccc
Confidence 9999975
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=154.14 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=144.0
Q ss_pred EEcCC-CCEEEEEEeccceEEEEEeecC---------------CccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcE
Q 000424 13 ALTPL-QPVVFFGFHRRMSVTVVGTVEG---------------GRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLI 75 (1525)
Q Consensus 13 A~hP~-~p~Vf~s~~~d~sV~v~dtve~---------------gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtI 75 (1525)
...|. +..+..+.+....|.+|+..+. .++.+++.+ |++.-++|+|+|-.. .|++|..-+.|
T Consensus 158 r~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~LlsGDc~~~I 236 (440)
T KOG0302|consen 158 RVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGRLLSGDCVKGI 236 (440)
T ss_pred eecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccccccCccccce
Confidence 33444 4566677777788888875332 245556665 999999999999433 58888888899
Q ss_pred EEEEcCCCcEE---EEEe-cCCceeecCceeEEEeCC-CCEEEEEeCCCcEEEEeCCCC-CceeeEeecccCcCeEEEEE
Q 000424 76 RAYNIHTYAVH---YTLQ-LDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGSQPITSVAW 149 (1525)
Q Consensus 76 rIWDi~t~k~l---~tL~-H~~~V~~~g~~sVaFsPd-g~~LaSgS~DgtIrVWDv~t~-~~s~i~il~gH~~~VtsIaf 149 (1525)
++|...++.=. ..|. |..+|- .++|||. ...|+|||.|++|+|||+++. ...++ ..++|...|+.|+|
T Consensus 237 ~lw~~~~g~W~vd~~Pf~gH~~SVE-----DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 237 HLWEPSTGSWKVDQRPFTGHTKSVE-----DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISW 310 (440)
T ss_pred EeeeeccCceeecCccccccccchh-----hhccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEc
Confidence 99998775322 2234 999999 9999995 567889999999999999975 23333 35899999999999
Q ss_pred cCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCC-CeEEE
Q 000424 150 LPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRL-NLAVL 228 (1525)
Q Consensus 150 sPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~-Nlial 228 (1525)
+-+-++|++|++||+++|||+|..... ...+.| .|....|++++|||.. ..++
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~f----------------------k~Hk~pItsieW~p~e~s~ia- 364 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSG---QPVATF----------------------KYHKAPITSIEWHPHEDSVIA- 364 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCC---CcceeE----------------------EeccCCeeEEEeccccCceEE-
Confidence 999999999999999999999964331 111111 3444578999999974 3344
Q ss_pred EecccccCCccccccccc
Q 000424 229 LFANFTGGDNIKNRAAYT 246 (1525)
Q Consensus 229 ~F~~~s~~Dd~~~k~~~~ 246 (1525)
.+++|.++-+|..
T Consensus 365 -----asg~D~QitiWDl 377 (440)
T KOG0302|consen 365 -----ASGEDNQITIWDL 377 (440)
T ss_pred -----eccCCCcEEEEEe
Confidence 5667777777763
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-14 Score=172.58 Aligned_cols=176 Identities=20% Similarity=0.294 Sum_probs=141.2
Q ss_pred ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeC
Q 000424 29 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHP 107 (1525)
Q Consensus 29 ~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsP 107 (1525)
..+-+|. +.+.++.+.+.+ |+.+|.+|.|++...+|+.|+.||+||+||+...+.+++|. |...+. +|.|||
T Consensus 50 ~k~~L~~-i~kp~~i~S~~~-hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-----sv~f~P 122 (825)
T KOG0267|consen 50 EKVNLWA-IGKPNAITSLTG-HESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-----SVDFHP 122 (825)
T ss_pred eeecccc-ccCCchhheeec-cCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-----eeeecc
Confidence 3333444 344455555555 99999999999999999999999999999999999999999 999999 999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCcccccc
Q 000424 108 TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFE 187 (1525)
Q Consensus 108 dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~ 187 (1525)
-+.+.++|+.|+.+++||.+ ..-++..+.+|...|.++.|+|+|++++++++|.+++|||.+.-. +...|
T Consensus 123 ~~~~~a~gStdtd~~iwD~R--k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk------~~~ef-- 192 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIR--KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK------LSKEF-- 192 (825)
T ss_pred ceEEeccccccccceehhhh--ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc------ccccc--
Confidence 99999999999999999999 344555578899999999999999999999999999999985211 11111
Q ss_pred CCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccc
Q 000424 188 PASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTR 247 (1525)
Q Consensus 188 p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~ 247 (1525)
..+.| .+..++|||..-+.+ +++-|..++.|..+
T Consensus 193 -------------~~~e~-------~v~sle~hp~e~Lla------~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 193 -------------KSHEG-------KVQSLEFHPLEVLLA------PGSSDRTVRFWDLE 226 (825)
T ss_pred -------------ccccc-------cccccccCchhhhhc------cCCCCceeeeeccc
Confidence 11111 345678998776666 88889998888865
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-14 Score=159.92 Aligned_cols=150 Identities=14% Similarity=0.258 Sum_probs=123.5
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCc--cceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk--~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
.||.|+. -+.++++++.++.+|+...... ....+. +|...|+.++|+ .+++++++.|++||+|++.++++++
T Consensus 281 Lhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR 354 (499)
T KOG0281|consen 281 LHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR 354 (499)
T ss_pred EEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh
Confidence 4667664 3456667899999999754421 122333 599999999997 4699999999999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
++. |...|- |+.|. ++.++|||.|.+|++||... ..+...++||..-|+||.|. .+.++||.-||+|+
T Consensus 355 tl~gHkRGIA-----ClQYr--~rlvVSGSSDntIRlwdi~~--G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkik 423 (499)
T KOG0281|consen 355 TLNGHKRGIA-----CLQYR--DRLVVSGSSDNTIRLWDIEC--GACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIK 423 (499)
T ss_pred hhhcccccce-----ehhcc--CeEEEecCCCceEEEEeccc--cHHHHHHhchHHhhhheeec--CceeeeccccceEE
Confidence 999 999999 88774 78999999999999999994 45555688999999999995 55899999999999
Q ss_pred EEEeeeecCC
Q 000424 167 VWKTRVIINP 176 (1525)
Q Consensus 167 IWDlr~~~~p 176 (1525)
|||+.....|
T Consensus 424 vWdl~aaldp 433 (499)
T KOG0281|consen 424 VWDLQAALDP 433 (499)
T ss_pred EEecccccCC
Confidence 9999866553
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-12 Score=145.27 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=103.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
.|+.+|.++++||+.+++++|+.|-.-.+|++.++.....+. |.++|+ ++.|+.||.+|++|+.+|.|+||++.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-----~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-----CCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-----EEEEccCceEEEecCCCccEEEEEcc
Confidence 499999999999999999999999999999999999999999 999999 99999999999999999999999999
Q ss_pred CCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 128 t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+...... +..--..+.=+.|||.++.|+.|+.||.+.+|.+.
T Consensus 137 tg~~~~~--~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 137 TGGEQWK--LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred cCceEEE--eecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 7533322 22334566778999999999999999999999986
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=145.91 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=138.5
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---cEEEEEe-cCCceeecCceeEEE-eC-CCCEEEEEeCC
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY---AVHYTLQ-LDNTIKLLGAGAFAF-HP-TLEWLFVGDRR 118 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~---k~l~tL~-H~~~V~~~g~~sVaF-sP-dg~~LaSgS~D 118 (1525)
.+.++|++.|-.+..+--|..||++|.|++|||+..+.. +++.+|. |.++|. -++| || -|..|+|++.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVw-----qv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVW-----KVAWAHPKFGTILASCSYD 79 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCee-----EEeecccccCcEeeEeecC
Confidence 344469998888887778999999999999999998765 4677888 999999 9999 55 68999999999
Q ss_pred CcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC--CCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccc
Q 000424 119 GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM--LRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDI 196 (1525)
Q Consensus 119 gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd--g~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi 196 (1525)
|.|.||.....+.+.......|...|++|+|-|+ |-.|+++|.||+|.|.+.+.. .....
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t----------------- 141 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTT----------------- 141 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccc-----------------
Confidence 9999999886433333346789999999999886 568999999999999988733 10000
Q ss_pred cccccccCCcceecCCCeeEEEEecC---CCeEEEE-----ecccccCCcccccccccccCceeeeeeeccccCCc
Q 000424 197 PRILSQQGGEAVYPLPRVRALEVHPR---LNLAVLL-----FANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 197 ~~iLs~~gG~~vy~l~~V~~v~~HP~---~Nlial~-----F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~ 264 (1525)
..+...+. .+++.+.|-|. +.++... .--.+++-|..+|+|+..++++.+-.+|++|.+-+
T Consensus 142 ~ki~~aH~-------~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 142 SKIVFAHE-------IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV 210 (299)
T ss_pred hhhhhccc-------cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence 00111000 13455555554 1111000 00007888889999999998888888899999976
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-14 Score=173.43 Aligned_cols=155 Identities=14% Similarity=0.254 Sum_probs=139.2
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
..-.|.|++.+-.|..|. .+.++++|| .+..+.+..+.+ |...+.+++|||-+.++++|+.|+.+++||++...|.+
T Consensus 72 pIeSl~f~~~E~Llaags-asgtiK~wD-leeAk~vrtLtg-h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~ 148 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGS-ASGTIKVWD-LEEAKIVRTLTG-HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH 148 (825)
T ss_pred cceeeecCcchhhhcccc-cCCceeeee-hhhhhhhhhhhc-cccCcceeeeccceEEeccccccccceehhhhccCcee
Confidence 456788999888876665 588999999 456666666666 99999999999999999999999999999999999999
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
++. |...|+ ++.|+|+|+|+++|++|.+++|||.. ...+...+..|...|.++.|||..-++++||.|++|+
T Consensus 149 ~~~s~~~vv~-----~l~lsP~Gr~v~~g~ed~tvki~d~~--agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 149 TYKSHTRVVD-----VLRLSPDGRWVASGGEDNTVKIWDLT--AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred eecCCcceeE-----EEeecCCCceeeccCCcceeeeeccc--ccccccccccccccccccccCchhhhhccCCCCceee
Confidence 999 999999 99999999999999999999999998 4566666789999999999999999999999999999
Q ss_pred EEEeee
Q 000424 167 VWKTRV 172 (1525)
Q Consensus 167 IWDlr~ 172 (1525)
+||+++
T Consensus 222 f~dlet 227 (825)
T KOG0267|consen 222 FWDLET 227 (825)
T ss_pred eeccce
Confidence 999984
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-13 Score=156.27 Aligned_cols=151 Identities=10% Similarity=0.132 Sum_probs=126.5
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC-cEEEEE
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTY-AVHYTL 89 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~-k~l~tL 89 (1525)
+-|+|..-.+|.++++++.+++|+. .+.....-+. +|++.|++.+|+|..+ +++||++||+||+||+++. ..+.++
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~-s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDL-STAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEc-CCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 5689999999999988888888885 3333333344 5999999999999765 7999999999999999887 778888
Q ss_pred ecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 90 QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 90 ~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
+|..+|. .|.|-|.|..|++++. ..|||||+.+. .+.+.....|...|+|+.+..++..|+|+|.|+.|++||
T Consensus 194 nhg~pVe-----~vl~lpsgs~iasAgG-n~vkVWDl~~G-~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 194 NHGCPVE-----SVLALPSGSLIASAGG-NSVKVWDLTTG-GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred cCCCcee-----eEEEcCCCCEEEEcCC-CeEEEEEecCC-ceehhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence 8999999 9999999999998874 57999999965 233323335999999999999999999999999999999
Q ss_pred ee
Q 000424 170 TR 171 (1525)
Q Consensus 170 lr 171 (1525)
+.
T Consensus 267 ~t 268 (487)
T KOG0310|consen 267 TT 268 (487)
T ss_pred cc
Confidence 64
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=167.04 Aligned_cols=153 Identities=19% Similarity=0.349 Sum_probs=124.8
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCC-cEEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTY-AVHYT 88 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~-k~l~t 88 (1525)
-|.||++.|.++++.+.|..|++||...+.... ..++ -.+.|+.|.|+|.. ..|+++.+.|.+++||++.. ++.+.
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k 215 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-TFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK 215 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccc-cccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH
Confidence 489999999999999999999999976553322 2233 67899999999964 57999999999999999865 56677
Q ss_pred Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC-EEEEEEC--CCC
Q 000424 89 LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCR--DGS 164 (1525)
Q Consensus 89 L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~--Dgt 164 (1525)
+. |.++|. |+.|||++.||++||+|++|+|||+.+.......+. .-..+|.+|.|-|..+ +|+|||. |-.
T Consensus 216 ~~AH~GpV~-----c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dts 289 (839)
T KOG0269|consen 216 LTAHNGPVL-----CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTS 289 (839)
T ss_pred hhcccCceE-----EEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhhccccce
Confidence 77 999999 999999999999999999999999996422222111 2256899999999866 5778764 779
Q ss_pred eeEEEee
Q 000424 165 LQVWKTR 171 (1525)
Q Consensus 165 IkIWDlr 171 (1525)
|+|||+|
T Consensus 290 V~VWDvr 296 (839)
T KOG0269|consen 290 VHVWDVR 296 (839)
T ss_pred EEEEeec
Confidence 9999998
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-13 Score=154.15 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=158.3
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
++-.+|.|+|+..+++.+. .+..+.+|+. +.+........+|...+.+++|.|||..+++|+.|++|..||+... .+
T Consensus 270 ~~V~yi~wSPDdryLlaCg-~~e~~~lwDv-~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~ 346 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACG-FDEVLSLWDV-DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-IL 346 (519)
T ss_pred CceEEEEECCCCCeEEecC-chHheeeccC-CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hh
Confidence 4567899999999987665 4667888884 5555555555557789999999999999999999999999998644 33
Q ss_pred EEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC-ceeeEeecccCcCeEEEEEcCCCCEEEEEECCC
Q 000424 87 YTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER-PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 87 ~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~-~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dg 163 (1525)
...+ ....|. +++..+||+++++.+.|..|++++..+.. ...+ .-.++|++++.|.+++++++.=.+.
T Consensus 347 ~~W~gvr~~~v~-----dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li----se~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 347 GNWEGVRDPKVH-----DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI----SEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred hcccccccceeE-----EEEEcCCCcEEEEEecccceeeechhhhhhhccc----cccCceeEEEEcCCCcEEEEEcccC
Confidence 3333 234577 99999999999999999999999988531 2233 3357899999999999999999999
Q ss_pred CeeEEEeeeecC-----CCC--CCCccccccCCCcccccccccccccCCcceecC---------------CCeeEEEEec
Q 000424 164 SLQVWKTRVIIN-----PNR--PPMQANFFEPASIESIDIPRILSQQGGEAVYPL---------------PRVRALEVHP 221 (1525)
Q Consensus 164 tIkIWDlr~~~~-----p~~--~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l---------------~~V~~v~~HP 221 (1525)
.+++||+..... .++ .-+...+|.. .+-..++++....++|.. ..|++|+|.|
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg-----~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG-----GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCC-----CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 999999972111 111 1111222222 233445555555555543 3588888888
Q ss_pred CCC-eEEEEecccccCCccccccccccc
Q 000424 222 RLN-LAVLLFANFTGGDNIKNRAAYTRE 248 (1525)
Q Consensus 222 ~~N-lial~F~~~s~~Dd~~~k~~~~~e 248 (1525)
.-. +.| +++||.++|+|....
T Consensus 493 ~~p~m~A------SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 493 ADPEMFA------SASDDGTIRIWGPSD 514 (519)
T ss_pred CCHHHhh------ccCCCCeEEEecCCc
Confidence 743 333 899999999998654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-13 Score=148.85 Aligned_cols=114 Identities=21% Similarity=0.339 Sum_probs=105.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCC--EEEEEeCCCcEEEEe
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLE--WLFVGDRRGTLLAWD 125 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~--~LaSgS~DgtIrVWD 125 (1525)
.|.++|+++|++ ++++|+|+.|.+|+|||++....+..+- |.+.|+ ++.|.++.. +|++|++||.|.||+
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-----aL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-----ALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-----EEEecCCcchhheeeecCCCcEEEEE
Confidence 499999999996 8999999999999999999999998888 999999 999998765 999999999999999
Q ss_pred CCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 126 VSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 126 v~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+.+ ..+...+.+|...|+.++.||.+++-+|.+.|+++++||+-
T Consensus 114 ~~~--W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 114 VGS--WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred cCC--eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 995 46667788999999999999999999999999999999984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=158.52 Aligned_cols=216 Identities=16% Similarity=0.136 Sum_probs=149.8
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----cEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCC
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY----AVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRR 118 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~----k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~D 118 (1525)
.++. |++.|.++++.|.|..|++|+.|.+|++||+... +..+.+. ..+.|+ +++|+++|..|++.+..
T Consensus 162 ~l~h-gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~-----sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 162 QLKH-GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQIN-----SLQYSVTGDQILVVSGS 235 (641)
T ss_pred eccC-CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccc-----eeeecCCCCeEEEEecC
Confidence 4444 8999999999999999999999999999998754 3344455 557889 99999999999999999
Q ss_pred CcEEEEeCCCC-Cc------eee---EeecccCcCeEEEEEcCCC-CEEEEEECCCCeeEEEeeeecCCCCCCCcccccc
Q 000424 119 GTLLAWDVSIE-RP------SMI---GIIQVGSQPITSVAWLPML-RLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFE 187 (1525)
Q Consensus 119 gtIrVWDv~t~-~~------s~i---~il~gH~~~VtsIafsPdg-~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~ 187 (1525)
...+|+|-... .. +++ ...+||...++|.+|||+. ..|+|||.||++||||+..... +...+-
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------q~qVik 309 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------QLQVIK 309 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh------heeEEe
Confidence 99999997742 00 111 2357999999999999964 5789999999999999863221 000001
Q ss_pred CCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccC-ceeeeeeeccccCCccc
Q 000424 188 PASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREG-RKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 188 p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg-~~q~~~tlq~~~~~~~s 266 (1525)
+ ...+|..+ .++.++|.|.++++| .+..|..+.+|..+.- ..--+.+=+.|..- ..
T Consensus 310 ~------------k~~~g~Rv----~~tsC~~nrdg~~iA------agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g-~~ 366 (641)
T KOG0772|consen 310 T------------KPAGGKRV----PVTSCAWNRDGKLIA------AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG-QD 366 (641)
T ss_pred e------------ccCCCccc----CceeeecCCCcchhh------hcccCCceeeeecCCcccccceEeeeccCCC-Cc
Confidence 1 01122221 368899999999999 8888898888885332 11122233444441 12
Q ss_pred chhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhh
Q 000424 267 VLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIAR 308 (1525)
Q Consensus 267 ~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r 308 (1525)
+.+-.|+++|. +|.+.. .|..+.+|||-+
T Consensus 367 Itsi~FS~dg~-------~LlSRg------~D~tLKvWDLrq 395 (641)
T KOG0772|consen 367 ITSISFSYDGN-------YLLSRG------FDDTLKVWDLRQ 395 (641)
T ss_pred eeEEEeccccc-------hhhhcc------CCCceeeeeccc
Confidence 23355666665 122222 689999999644
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=163.03 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=126.7
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ- 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~- 90 (1525)
+++.--+.. +++.+.|.++++|+ ...+.+...+.+ |...|+++... ..++++|+.|.+|++|++.++.++.++.
T Consensus 255 l~~~~~~~~-lvsgS~D~t~rvWd-~~sg~C~~~l~g-h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 255 LAFPSGGDK-LVSGSTDKTERVWD-CSTGECTHSLQG-HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred EEEecCCCE-EEEEecCCcEEeEe-cCCCcEEEEecC-CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc
Confidence 445443444 45555799999999 667777777776 99999999886 4578889999999999999999999999
Q ss_pred cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
|..+|+ ++..+ +..+++|+.|++|+|||+. ..++...+.+|...|.++.+.+. ..+++||.|++|++||+
T Consensus 330 h~~~V~-----~v~~~--~~~lvsgs~d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 330 HTGPVN-----CVQLD--EPLLVSGSYDGTVKVWDPR--TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred ccccEE-----EEEec--CCEEEEEecCceEEEEEhh--hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 999999 99887 8899999999999999999 56777788999999999988776 89999999999999999
Q ss_pred eee
Q 000424 171 RVI 173 (1525)
Q Consensus 171 r~~ 173 (1525)
+..
T Consensus 400 ~~~ 402 (537)
T KOG0274|consen 400 RTK 402 (537)
T ss_pred Cch
Confidence 754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=149.25 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=164.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeC
Q 000424 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 48 ~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv 126 (1525)
.+|++.|..++.....+++.+++.|.+-+||.+.++.|+.++. |.++|+ +++||+.+..++++|.|++-.||..
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVN-----sikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVN-----SIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccccccee-----eEEeccccceEEEccCCcchHHHHH
Confidence 4699999999999999999999999999999999999999999 999999 9999999999999999999999972
Q ss_pred C------CC--------------------------------CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEE
Q 000424 127 S------IE--------------------------------RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 127 ~------t~--------------------------------~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIW 168 (1525)
. +. .+.....+.+|...|.++.|-..|+.++|+|.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 1 10 000112367899999999999999999999999999999
Q ss_pred EeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccccccc
Q 000424 169 KTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTRE 248 (1525)
Q Consensus 169 Dlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~e 248 (1525)
|+.+-.. -.+|.++. ..++.+..||+..++. +++-|+.-+.|..|+
T Consensus 300 DVEtge~---------------------v~~LtGHd-------~ELtHcstHptQrLVv------TsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 300 DVETGEV---------------------VNILTGHD-------SELTHCSTHPTQRLVV------TSSRDTTFRLWDFRE 345 (481)
T ss_pred eeccCce---------------------eccccCcc-------hhccccccCCcceEEE------EeccCceeEeccchh
Confidence 9863211 11233332 2467799999999877 788899999999997
Q ss_pred CceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhh-hceeee
Q 000424 249 GRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIAR-KAFLYS 314 (1525)
Q Consensus 249 g~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r-~~~i~s 314 (1525)
. .+-+.++|||...+.|+.+.. +. .++.+. .|+++.|||+.+ |.++-|
T Consensus 346 a-I~sV~VFQGHtdtVTS~vF~~----dd-~vVSgS------------DDrTvKvWdLrNMRsplAT 394 (481)
T KOG0300|consen 346 A-IQSVAVFQGHTDTVTSVVFNT----DD-RVVSGS------------DDRTVKVWDLRNMRSPLAT 394 (481)
T ss_pred h-cceeeeecccccceeEEEEec----CC-ceeecC------------CCceEEEeeeccccCccee
Confidence 6 455689999999987754321 21 233333 799999999755 444444
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-13 Score=159.73 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=119.8
Q ss_pred EEEEEeccceEEEEEeecCC-ccceEEccCCCCCeEEEEE-cCCCCEEEEEECCCcEEEEEcCCC--cEEEEEe------
Q 000424 21 VFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLAC-HPRLPVLYVAYADGLIRAYNIHTY--AVHYTLQ------ 90 (1525)
Q Consensus 21 Vf~s~~~d~sV~v~dtve~g-k~~t~ik~~H~~~V~sIaf-~P~g~~LaSGs~DgtIrIWDi~t~--k~l~tL~------ 90 (1525)
.|.+.+.|.+|++|+...++ .+...+. .|++.|.+++. .++..++|||+.|+.|.+||+.++ +.+.+++
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 45677789999999976655 4444554 49999999999 778889999999999999999987 3444333
Q ss_pred ----cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 91 ----LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 91 ----H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
+..+|. +++.++.|..|++|+..+.+++||.++..+.+. +.||+..|.++..++||..++|+|.||+|+
T Consensus 166 l~sG~k~siY-----SLA~N~t~t~ivsGgtek~lr~wDprt~~kimk--LrGHTdNVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 166 LGSGPKDSIY-----SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK--LRGHTDNVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred CCCCCcccee-----eeecCCcceEEEecCcccceEEeccccccceee--eeccccceEEEEEcCCCCeEeecCCCceEE
Confidence 334444 999999999999999999999999997544444 669999999999999999999999999999
Q ss_pred EEEeee
Q 000424 167 VWKTRV 172 (1525)
Q Consensus 167 IWDlr~ 172 (1525)
+||++.
T Consensus 239 lWdLgq 244 (735)
T KOG0308|consen 239 LWDLGQ 244 (735)
T ss_pred eeeccc
Confidence 999873
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-13 Score=151.31 Aligned_cols=172 Identities=14% Similarity=0.216 Sum_probs=134.2
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe---------cCCceeecCceeEEEeCCCCEEEEE
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ---------LDNTIKLLGAGAFAFHPTLEWLFVG 115 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~---------H~~~V~~~g~~sVaFsPdg~~LaSg 115 (1525)
.++.+.+..+.|..|+|+|++|++|+.||.|.+||.-+++..+.++ ++..|. |++|+.|...+++|
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-----ci~FSRDsEMlAsG 281 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-----CISFSRDSEMLASG 281 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-----EEeecccHHHhhcc
Confidence 3444567778999999999999999999999999998887655443 677888 99999999999999
Q ss_pred eCCCcEEEEeCCCCCceeeEee-cccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccc
Q 000424 116 DRRGTLLAWDVSIERPSMIGII-QVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESI 194 (1525)
Q Consensus 116 S~DgtIrVWDv~t~~~s~i~il-~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesl 194 (1525)
+.||.|+||.+++. .++.-+ .+|+..|+|++|+.|+..++|+|-|.++++--++.-..
T Consensus 282 sqDGkIKvWri~tG--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~------------------- 340 (508)
T KOG0275|consen 282 SQDGKIKVWRIETG--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC------------------- 340 (508)
T ss_pred CcCCcEEEEEEecc--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-------------------
Confidence 99999999999964 333223 48999999999999999999999999999987652110
Q ss_pred cccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeecc
Q 000424 195 DIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQS 259 (1525)
Q Consensus 195 di~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~ 259 (1525)
|....|..-| |+...|.++++.+. +++.|..+|+|....+ .|..|++.
T Consensus 341 -----LKEfrGHsSy----vn~a~ft~dG~~ii------saSsDgtvkvW~~Ktt--eC~~Tfk~ 388 (508)
T KOG0275|consen 341 -----LKEFRGHSSY----VNEATFTDDGHHII------SASSDGTVKVWHGKTT--ECLSTFKP 388 (508)
T ss_pred -----HHHhcCcccc----ccceEEcCCCCeEE------EecCCccEEEecCcch--hhhhhccC
Confidence 1111121122 67788888998877 8888999999987665 34445554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=158.98 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=126.5
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
+++|+-.+.++.+|+ ++..|++++..+. ...+.+++ |+.+|.++.|+|.+.+||+.+.||+|++||++++.+.+++.
T Consensus 101 ~~~v~g~g~~iaags-dD~~vK~~~~~D~-s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 101 DLAVSGSGKMIAAGS-DDTAVKLLNLDDS-SQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred EEEEecCCcEEEeec-CceeEEEEecccc-chheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 678888888887776 5889999986544 44555666 99999999999999999999999999999999998888876
Q ss_pred ----cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 91 ----LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 91 ----H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
..+.+.-...+.++|||++..++..+.|++|++++..++.....-..+.|...+.++.|+|.|.|||+++.||.|-
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 1111100011378999999899999999999999988753333311334555699999999999999999999999
Q ss_pred EEEeee
Q 000424 167 VWKTRV 172 (1525)
Q Consensus 167 IWDlr~ 172 (1525)
|||+.+
T Consensus 258 vWnv~t 263 (933)
T KOG1274|consen 258 VWNVDT 263 (933)
T ss_pred EEeccc
Confidence 999875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=149.73 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=125.3
Q ss_pred cCCcEEEEEEcCCCC-EEEEEEeccceEEEEEee--cCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEc
Q 000424 5 SVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTV--EGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNI 80 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p-~Vf~s~~~d~sV~v~dtv--e~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi 80 (1525)
-..+.+.++|||+.+ .++.....-..|-+|+.. +....-..+...|..+|.++.|+|... .+++.|.||+||+-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 345778999999988 777777788899999973 444455566667999999999999765 7999999999999987
Q ss_pred CCCc-------------------------E--------------------EEEEe-cCCceeecCceeEEEeCCCC-EEE
Q 000424 81 HTYA-------------------------V--------------------HYTLQ-LDNTIKLLGAGAFAFHPTLE-WLF 113 (1525)
Q Consensus 81 ~t~k-------------------------~--------------------l~tL~-H~~~V~~~g~~sVaFsPdg~-~La 113 (1525)
.... + ...+. |...|+ +|+++|..+ +|+
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~-----sv~~NP~~p~~la 339 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT-----SVALNPVCPWFLA 339 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc-----eeecCCCCchhee
Confidence 5320 0 00112 444566 999999654 578
Q ss_pred EEeCCCcEEEEeCCCC--Cce-eeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 114 VGDRRGTLLAWDVSIE--RPS-MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 114 SgS~DgtIrVWDv~t~--~~s-~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
++|.|++.+|||++.. ..+ ++ ..-.|...|+++.|||++-.|+|.+.|..|+|||..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~l-st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFL-STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcce-ecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 8999999999999973 332 22 234799999999999998889999999999999995
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-09 Score=133.63 Aligned_cols=507 Identities=14% Similarity=0.144 Sum_probs=269.8
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccc-eEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP-TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~-t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
-+.+.||++-....+.++- .+.++.+|+. ..++.. ..+.++-...|.+++|.+ +..|+|.+.+|+|.-||+.+.++
T Consensus 26 s~I~slA~s~kS~~lAvsR-t~g~IEiwN~-~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSR-TDGNIEIWNL-SNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred cceEEEEEeccCCceeeec-cCCcEEEEcc-CCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 3567788887766654444 5788888885 445533 344443456799999995 45677888899999999999999
Q ss_pred EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCC
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 86 l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dgt 164 (1525)
.+.++ ..+.+. +++.+|.+..++.|++||.+..++.....-.....+....++|.+++|+|++..+++||.||.
T Consensus 103 ~~~~d~~gg~IW-----siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 103 KYNIDSNGGAIW-----SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred eEEecCCCccee-----EEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 99999 788899 999999999999999999887777774322222334455789999999999999999999999
Q ss_pred eeEEEeeeecCCCCCCCccccccCCCcccccccccccccC-CcceecCCCeeEEEEecCCCeEEEEecccccCCcccccc
Q 000424 165 LQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQG-GEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRA 243 (1525)
Q Consensus 165 IkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~g-G~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~ 243 (1525)
|++||....-.-+...+ .+-..+ ++. --||.|.+-. -+.++ ++....+++.
T Consensus 178 Iriwd~~~~~t~~~~~~-----------------~~d~l~k~~~----~iVWSv~~Lr-d~tI~------sgDS~G~V~F 229 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITM-----------------QLDRLSKREP----TIVWSVLFLR-DSTIA------SGDSAGTVTF 229 (691)
T ss_pred EEEEEcCCCceEEEeee-----------------cccccccCCc----eEEEEEEEee-cCcEE------EecCCceEEE
Confidence 99999863211000000 011111 011 1256677763 34444 4555667888
Q ss_pred cccccCceeeeeeeccccCCcccch----hhhcccCCCcccchhhHHHHH---HHhhhccC--CCceeeehhhhhceeee
Q 000424 244 AYTREGRKQLFAVLQSARGSSASVL----KEKLSSMGSSGILADHQLQAQ---LQEHHLKG--HSHLTISDIARKAFLYS 314 (1525)
Q Consensus 244 ~~~~eg~~q~~~tlq~~~~~~~s~~----~e~~~slgs~g~l~~~ql~~~---~~~~~~~~--~~~~~I~di~r~~~i~s 314 (1525)
|....|. +.+..+.|...+-++- -.++.+-|..+.+..|++... |..-.... .++++-++.- ...++|
T Consensus 230 Wd~~~gT--LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~-~~~l~s 306 (691)
T KOG2048|consen 230 WDSIFGT--LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI-ENALIS 306 (691)
T ss_pred EcccCcc--hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeee-cceEEe
Confidence 8877662 3333333333321110 133444455555544433211 21110000 0111111000 013333
Q ss_pred eecccccccCccccCcceeeeccccccCCCcccccccccccccccccccccccceeeEE-e-CceEEEeecCCCc-----
Q 000424 315 HFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYV-D-GINLVAYNLCSGA----- 387 (1525)
Q Consensus 315 ~~~d~~~k~~~~~~~p~~~i~~~~~~~~~~~vv~~~~~e~~~f~~~~~v~~~~~~~~y~-~-~~~l~~~~l~~g~----- 387 (1525)
+=+|.+..+ . -+++|+ .+.|...+.|....++..-+.+.+|+ + ...+.-|-+.+..
T Consensus 307 gG~d~~l~i-----------~----~s~~~~--~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 307 GGRDFTLAI-----------C----SSREFK--NMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred cceeeEEEE-----------c----cccccC--chhhhccccccccceeecCccceEEEEeccccccceeccCccccccc
Confidence 222222221 0 122222 34566556677766666555543333 3 3444444444441
Q ss_pred -cccccccccccCCCeeeccccccccCCccEEEEEeeccCCcceEEEEEecccc--c--cccc-CCCCcccceeEEeCCC
Q 000424 388 -DSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDT--Q--LADS-KSSTVKGRDAAFIGPN 461 (1525)
Q Consensus 388 -~~~~~~L~~~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l--~--~rnk-~G~~~~g~~~~fig~~ 461 (1525)
+.-+.+|.+++.-+.- .-.-||.|..+++-- -.++-||+.+-+- . .+.+ .-....+.-..| .-+
T Consensus 370 ~~~~Llkl~~k~~~nIs----~~aiSPdg~~Ia~st-----~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~f-tid 439 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENIS----CAAISPDGNLIAIST-----VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISF-TID 439 (691)
T ss_pred ChhhheeeecCCcccee----eeccCCCCCEEEEee-----ccceEEEEeccCcceeEEEeccchhhhccceeeEE-Eec
Confidence 1112222222211100 113356666554432 2456677643211 0 0111 001122333344 223
Q ss_pred CCcEEEEeCCCCeEEEEEcCCchhhhhhcccCCcccCCCccccccccccCCcccccccccceeeecCCcceeEEeecCCe
Q 000424 462 EDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQ 541 (1525)
Q Consensus 462 ~n~yAvle~~~~~v~I~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~~~l~~~~~~~~ 541 (1525)
+|...+.-.+-..+.++.++....+++ ++.+. ..+ ...+.+|+..|-+.-+...++.+.
T Consensus 440 ~~k~~~~s~~~~~le~~el~~ps~kel-~~~~~-------------~~~-------~~~I~~l~~SsdG~yiaa~~t~g~ 498 (691)
T KOG2048|consen 440 KNKLFLVSKNIFSLEEFELETPSFKEL-KSIQS-------------QAK-------CPSISRLVVSSDGNYIAAISTRGQ 498 (691)
T ss_pred CceEEEEecccceeEEEEecCcchhhh-hcccc-------------ccC-------CCcceeEEEcCCCCEEEEEeccce
Confidence 344433333445788888887777665 33221 001 134788888877775554444344
Q ss_pred EEEEeeccccccccccccccccccccceeeEeeccceEEEEEEcccCCccEEEEEeeeeEEEEccchhhhhcccc
Q 000424 542 IGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSST 616 (1525)
Q Consensus 542 i~~~~~~~~yd~~t~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~g~~vaI~t~~~i~i~~~~l~~l~~~~~ 616 (1525)
|.. |++++...+ -+....+-.|+-..-+...++.+|..-+++.+|-++-+...|...+.
T Consensus 499 I~v------~nl~~~~~~----------~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~ 557 (691)
T KOG2048|consen 499 IFV------YNLETLESH----------LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSK 557 (691)
T ss_pred EEE------EEcccceee----------cchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhh
Confidence 443 455555221 11222222244444343345666766777788877776665554443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=154.49 Aligned_cols=195 Identities=17% Similarity=0.286 Sum_probs=154.0
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEee---c-CCccceEEcc------CCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTV---E-GGRAPTKIKT------DLKKPIVNLACHPRLPVLYVAYADGLIRA 77 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtv---e-~gk~~t~ik~------~H~~~V~sIaf~P~g~~LaSGs~DgtIrI 77 (1525)
-.-.|+..|++....+++ .|.+|++|+.. + ++.....++- +.++.|.++.++|++++||++-.|.+|++
T Consensus 456 aIWsi~~~pD~~g~vT~s-aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGS-ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKV 534 (888)
T ss_pred ceeeeeecCCCCceEEec-CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence 345789999999877666 59999999862 1 1221111221 24678999999999999999999999999
Q ss_pred EEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC--CceeeEeecccCcCeEEEEEcCCCC
Q 000424 78 YNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE--RPSMIGIIQVGSQPITSVAWLPMLR 154 (1525)
Q Consensus 78 WDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~--~~s~i~il~gH~~~VtsIafsPdg~ 154 (1525)
|-+.+.+...++- |.-+|. |++.+||++.+++||.|.+|+||-++-+ .+++. +|.+.|+++.|.|...
T Consensus 535 yflDtlKFflsLYGHkLPV~-----smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f----AHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVL-----SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF----AHDDSVMSVQFLPKTH 605 (888)
T ss_pred EEecceeeeeeeccccccee-----EEeccCCcCeEEeccCCCceEEeccccchhhhhhh----cccCceeEEEEcccce
Confidence 9999988887777 999999 9999999999999999999999977732 34444 9999999999999999
Q ss_pred EEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccc
Q 000424 155 LLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFT 234 (1525)
Q Consensus 155 lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s 234 (1525)
++.|||.|+.|+-||-..... + ..|..+. ..||+++..|++.++. +
T Consensus 606 ~FFt~gKD~kvKqWDg~kFe~---------------i------q~L~~H~-------~ev~cLav~~~G~~vv------s 651 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEKFEE---------------I------QKLDGHH-------SEVWCLAVSPNGSFVV------S 651 (888)
T ss_pred eEEEecCcceEEeechhhhhh---------------h------eeeccch-------heeeeeEEcCCCCeEE------e
Confidence 999999999999999652211 0 0111111 2589999999998877 7
Q ss_pred cCCccccccccc
Q 000424 235 GGDNIKNRAAYT 246 (1525)
Q Consensus 235 ~~Dd~~~k~~~~ 246 (1525)
++-|..++.|-+
T Consensus 652 ~shD~sIRlwE~ 663 (888)
T KOG0306|consen 652 SSHDKSIRLWER 663 (888)
T ss_pred ccCCceeEeeec
Confidence 888888887754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=155.40 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=145.5
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ- 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~- 90 (1525)
|.|+ ..-.+.+++ ...|.+|+...+. ++.+...+...|+++.|+++|.+|++|..+|.|.|||....+.+.++.
T Consensus 183 ldWs-s~n~laVal--g~~vylW~~~s~~--v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL--GQSVYLWSASSGS--VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hhcc-cCCeEEEEe--cceEEEEecCCCc--eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 4555 344555555 3467778765543 333333358999999999999999999999999999999998888888
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|...|- +++|+ +..+.+|+.|+.|..+|++... .....+.+|.+.|..+.|++|+.+|++|+.|+.+.|||
T Consensus 258 ~h~~rvg-----~laW~--~~~lssGsr~~~I~~~dvR~~~-~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 258 SHASRVG-----SLAWN--SSVLSSGSRDGKILNHDVRISQ-HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred CcCceeE-----EEecc--CceEEEecCCCcEEEEEEecch-hhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 788888 99998 6678899999999999999642 22224779999999999999999999999999999999
Q ss_pred eeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecC-CCeEEEEecccccCCccccccccccc
Q 000424 170 TRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPR-LNLAVLLFANFTGGDNIKNRAAYTRE 248 (1525)
Q Consensus 170 lr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~-~Nlial~F~~~s~~Dd~~~k~~~~~e 248 (1525)
.+.... +. .+..+. ..|+.++|+|- .+++|. ..|.-|..++.|....
T Consensus 330 ~~~~~p-----~~----------------~~~~H~-------aAVKA~awcP~q~~lLAs----GGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 330 GLSPEP-----KF----------------TFTEHT-------AAVKALAWCPWQSGLLAT----GGGSADRCIKFWNTNT 377 (484)
T ss_pred CCCccc-----cE----------------EEeccc-------eeeeEeeeCCCccCceEE----cCCCcccEEEEEEcCC
Confidence 831110 00 001111 24788999996 577663 2677888888888776
Q ss_pred C
Q 000424 249 G 249 (1525)
Q Consensus 249 g 249 (1525)
|
T Consensus 378 g 378 (484)
T KOG0305|consen 378 G 378 (484)
T ss_pred C
Confidence 6
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=156.47 Aligned_cols=242 Identities=19% Similarity=0.173 Sum_probs=180.0
Q ss_pred EEEEeccceEEEEEeecCCccceEEccCCCCCeEE-EEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeec
Q 000424 22 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN-LACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLL 98 (1525)
Q Consensus 22 f~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~s-Iaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~ 98 (1525)
..+.+++.++++|....+....+....+|.+-|.. +++-+.++ .+++|+.|.+|.+|...+..++.+|. |+..|.
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-- 105 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-- 105 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccccee--
Confidence 45556789999999888877765555558888877 88876444 59999999999999999999999999 999999
Q ss_pred CceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCC
Q 000424 99 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNR 178 (1525)
Q Consensus 99 g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~ 178 (1525)
|++-..++. ++|||.|.|++||-... .. -.+++|...|+++..-|++ .++|||.|++||+|.-....+
T Consensus 106 ---~ls~~~~~~-~iSgSWD~TakvW~~~~--l~--~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~--- 173 (745)
T KOG0301|consen 106 ---SLSIGEDGT-LISGSWDSTAKVWRIGE--LV--YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLK--- 173 (745)
T ss_pred ---eeecCCcCc-eEecccccceEEecchh--hh--cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhh---
Confidence 988777776 99999999999997663 12 2267999999999999998 788999999999997543222
Q ss_pred CCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeec
Q 000424 179 PPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQ 258 (1525)
Q Consensus 179 ~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq 258 (1525)
.++++. .+|+.+++-|+.-++ +++.|..+|.|.. +|. ....+-
T Consensus 174 --------------------tf~gHt-------D~VRgL~vl~~~~fl-------ScsNDg~Ir~w~~-~ge--~l~~~~ 216 (745)
T KOG0301|consen 174 --------------------TFSGHT-------DCVRGLAVLDDSHFL-------SCSNDGSIRLWDL-DGE--VLLEMH 216 (745)
T ss_pred --------------------hhccch-------hheeeeEEecCCCeE-------eecCCceEEEEec-cCc--eeeeee
Confidence 122221 357778887775554 5788889998987 332 345788
Q ss_pred cccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeeeeecccccccCccccCcceeeeccc
Q 000424 259 SARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSK 338 (1525)
Q Consensus 259 ~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s~~~d~~~k~~~~~~~p~~~i~~~~ 338 (1525)
||.+.+||+. ...+++.+.-- -+|++++||+.. .+++. ..+|..+|.+.+
T Consensus 217 ghtn~vYsis-----~~~~~~~Ivs~-----------gEDrtlriW~~~--e~~q~------------I~lPttsiWsa~ 266 (745)
T KOG0301|consen 217 GHTNFVYSIS-----MALSDGLIVST-----------GEDRTLRIWKKD--ECVQV------------ITLPTTSIWSAK 266 (745)
T ss_pred ccceEEEEEE-----ecCCCCeEEEe-----------cCCceEEEeecC--ceEEE------------EecCccceEEEE
Confidence 9999999862 22334444322 389999999744 44444 468888887555
Q ss_pred cc-cCCC
Q 000424 339 HQ-LKDI 344 (1525)
Q Consensus 339 ~~-~~~~ 344 (1525)
.. ++|+
T Consensus 267 ~L~NgDI 273 (745)
T KOG0301|consen 267 VLLNGDI 273 (745)
T ss_pred EeeCCCE
Confidence 44 5554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-13 Score=160.02 Aligned_cols=220 Identities=15% Similarity=0.257 Sum_probs=155.1
Q ss_pred CCCCeE---EEEEc-CCCCEEEEEECCCcEEEEEcCCCc------EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCC
Q 000424 50 LKKPIV---NLACH-PRLPVLYVAYADGLIRAYNIHTYA------VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR 118 (1525)
Q Consensus 50 H~~~V~---sIaf~-P~g~~LaSGs~DgtIrIWDi~t~k------~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~D 118 (1525)
|...|. .+..+ |.+++|++|+.||.|++|++.... ....++ |.+.|+ .+....+++.++|+|.|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN-----DiiL~~~~~tlIS~SsD 94 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-----DIILCGNGKTLISASSD 94 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh-----hHHhhcCCCceEEecCC
Confidence 444454 44444 456689999999999999975431 366777 999999 99999999999999999
Q ss_pred CcEEEEeCCCCCceeeEeecccCcCeEEEEE-cCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCccccccc
Q 000424 119 GTLLAWDVSIERPSMIGIIQVGSQPITSVAW-LPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIP 197 (1525)
Q Consensus 119 gtIrVWDv~t~~~s~i~il~gH~~~VtsIaf-sPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~ 197 (1525)
-+|++|+.......+..++..|.++|.|+++ -++..++|||+.|+.|.+||+++... ..... |....++++
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~----~l~~s-~n~~t~~sl--- 166 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA----TLVAS-FNNVTVNSL--- 166 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch----hhhhh-ccccccccC---
Confidence 9999999986433455567789999999999 88999999999999999999984321 00000 011111111
Q ss_pred ccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccchhhhcccCCC
Q 000424 198 RILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGS 277 (1525)
Q Consensus 198 ~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs 277 (1525)
.+ | +...|-.++..+++.+++ +|+-.+-.+.|..+.+++.+ -||||..++-.++ +...|.
T Consensus 167 --~s---G----~k~siYSLA~N~t~t~iv------sGgtek~lr~wDprt~~kim--kLrGHTdNVr~ll---~~dDGt 226 (735)
T KOG0308|consen 167 --GS---G----PKDSIYSLAMNQTGTIIV------SGGTEKDLRLWDPRTCKKIM--KLRGHTDNVRVLL---VNDDGT 226 (735)
T ss_pred --CC---C----CccceeeeecCCcceEEE------ecCcccceEEecccccccee--eeeccccceEEEE---EcCCCC
Confidence 11 1 112334467777776655 67777788899988876555 6999999973321 111221
Q ss_pred cccchhhHHHHHHHhhhccCCCceeeehhhhhceeeee
Q 000424 278 SGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 315 (1525)
Q Consensus 278 ~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s~ 315 (1525)
-++.. ++|.++++||++.+.+++|+
T Consensus 227 -~~ls~------------sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 227 -RLLSA------------SSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred -eEeec------------CCCceEEeeeccccceeeeE
Confidence 13332 27999999999999999994
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=138.53 Aligned_cols=224 Identities=18% Similarity=0.227 Sum_probs=158.8
Q ss_pred ccccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000424 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 81 (1525)
Q Consensus 2 ~~~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~ 81 (1525)
+..+.|+...+.|+|....+++++ .|.++.+++. +.. ..+.+..|+.++.+++|.+ ...+++|+.||.||.+|+.
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvss-WDgslrlYdv-~~~--~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSS-WDGSLRLYDV-PAN--SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEe-ccCcEEEEec-cch--hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 456789999999999999998888 6999988884 332 2223334999999999997 5678999999999999999
Q ss_pred CCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEEC
Q 000424 82 TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 82 t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~ 161 (1525)
++.......|...++ |+.+++....+++||.|++|++||.+. ....+.+.. ...|.|+.. .+..|+.|+.
T Consensus 84 ~~~~~~igth~~~i~-----ci~~~~~~~~vIsgsWD~~ik~wD~R~--~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~ 153 (323)
T KOG1036|consen 84 TGNEDQIGTHDEGIR-----CIEYSYEVGCVISGSWDKTIKFWDPRN--KVVVGTFDQ-GKKVYCMDV--SGNRLVVGTS 153 (323)
T ss_pred CCcceeeccCCCceE-----EEEeeccCCeEEEcccCccEEEEeccc--ccccccccc-CceEEEEec--cCCEEEEeec
Confidence 988776666999999 999999888999999999999999994 333333333 336777655 5668889999
Q ss_pred CCCeeEEEeeeecCCCC---C----CCccccccCC--C-----------ccccccccc------------ccccCCccee
Q 000424 162 DGSLQVWKTRVIINPNR---P----PMQANFFEPA--S-----------IESIDIPRI------------LSQQGGEAVY 209 (1525)
Q Consensus 162 DgtIkIWDlr~~~~p~~---~----~~~a~~f~p~--~-----------Iesldi~~i------------Ls~~gG~~vy 209 (1525)
|..|.+||+|....+.. . .+..-.+.|. + ++-+|-..- +...+-+.+|
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 99999999995443321 0 0111111121 1 122221100 0111122355
Q ss_pred cCCCeeEEEEecCCCeEEEEecccccCCcccccccccccC
Q 000424 210 PLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 210 ~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg 249 (1525)
| |+.++|||.....+ +++.|..+-.|+....
T Consensus 234 P---VNai~Fhp~~~tfa------TgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 234 P---VNAIAFHPIHGTFA------TGGSDGIVNIWDLFNR 264 (323)
T ss_pred E---eceeEeccccceEE------ecCCCceEEEccCcch
Confidence 4 69999999877666 8888888888875443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=141.82 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=108.5
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEec
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL 91 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H 91 (1525)
+||+.+...+++|.. .+-+.+++.-..-.++.-+ .+|.+.|+.+.|...+..++|.++|++||+||.+++..++++..
T Consensus 106 ~af~~ds~~lltgg~-ekllrvfdln~p~App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~ 183 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQ-EKLLRVFDLNRPKAPPKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF 183 (334)
T ss_pred EEecccchhhhccch-HHHhhhhhccCCCCCchhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence 577777777776663 4445555532222333334 45999999999999899999999999999999999999888875
Q ss_pred CCceeecCceeEEEeCCCC----------------------------------------EEEEEeCCCcEEEEeCCCCCc
Q 000424 92 DNTIKLLGAGAFAFHPTLE----------------------------------------WLFVGDRRGTLLAWDVSIERP 131 (1525)
Q Consensus 92 ~~~V~~~g~~sVaFsPdg~----------------------------------------~LaSgS~DgtIrVWDv~t~~~ 131 (1525)
..+|+ ++.++++|. .+++|+.|..+..||+.+.
T Consensus 184 ~s~Vt-----SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-- 256 (334)
T KOG0278|consen 184 NSPVT-----SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-- 256 (334)
T ss_pred CCCCc-----ceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC--
Confidence 55555 555555554 3444444444444554432
Q ss_pred eeeEe-ecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 132 SMIGI-IQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 132 s~i~i-l~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.-++. .++|..+|.|+.|+|+|...++||+||+|++|...
T Consensus 257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 11122 37899999999999999999999999999999875
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-11 Score=134.24 Aligned_cols=250 Identities=10% Similarity=0.108 Sum_probs=169.9
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCcE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA--DGLIRAYNIHTYAV 85 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~--DgtIrIWDi~t~k~ 85 (1525)
..-.|.||+++..++++. .+.++.+++. ..++....+.. ++-.|-.+.|......+..++. |.+||..++.+.+.
T Consensus 16 ~i~sl~fs~~G~~litss-~dDsl~LYd~-~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS-EDDSLRLYDS-LSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred ceeEEEecCCCCEEEEec-CCCeEEEEEc-CCCceeeEeec-ccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 455789999999988755 5778888884 44555555555 5556777788666666655555 89999999999999
Q ss_pred EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCC
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 86 l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dgt 164 (1525)
++.|. |.+.|+ +++.+|-+..++|+|.|++||+||++. ..+.+.+ |...-..++|+|+|-++|+++....
T Consensus 93 lRYF~GH~~~V~-----sL~~sP~~d~FlS~S~D~tvrLWDlR~--~~cqg~l--~~~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 93 LRYFPGHKKRVN-----SLSVSPKDDTFLSSSLDKTVRLWDLRV--KKCQGLL--NLSGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEcCCCCceEE-----EEEecCCCCeEEecccCCeEEeeEecC--CCCceEE--ecCCCcceeECCCCcEEEEecCCCe
Confidence 99999 999999 999999999999999999999999995 3443333 3334456899999999999998889
Q ss_pred eeEEEeeeec-CCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccc
Q 000424 165 LQVWKTRVII-NPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRA 243 (1525)
Q Consensus 165 IkIWDlr~~~-~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~ 243 (1525)
|+++|+|.+- .|.. .| - +.. -...+++.++|.|.+-.+-+ +.+....++
T Consensus 164 IkLyD~Rs~dkgPF~-----tf---------~----i~~------~~~~ew~~l~FS~dGK~iLl------sT~~s~~~~ 213 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFT-----TF---------S----ITD------NDEAEWTDLEFSPDGKSILL------STNASFIYL 213 (311)
T ss_pred EEEEEecccCCCCce-----eE---------c----cCC------CCccceeeeEEcCCCCEEEE------EeCCCcEEE
Confidence 9999999652 2111 01 0 000 11246788999999887653 334455555
Q ss_pred cccccCceeeeeeeccccCCcccchhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeee
Q 000424 244 AYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYS 314 (1525)
Q Consensus 244 ~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s 314 (1525)
...-+|. ...++.++.+...-.+...+.+-+. =++.+. +|+.+-||++..-..+..
T Consensus 214 lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs------------~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 214 LDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSK-FVLSGS------------DDGTIHVWNLETGKKVAV 269 (311)
T ss_pred EEccCCc--EeeeEeeccCCCCcceeEEECCCCc-EEEEec------------CCCcEEEEEcCCCcEeeE
Confidence 5555554 2335555555431112222222222 133333 678899998755544544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=145.16 Aligned_cols=213 Identities=18% Similarity=0.257 Sum_probs=146.8
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE----EE---E-----------e-cCCceeecCceeEEEeC
Q 000424 47 KTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH----YT---L-----------Q-LDNTIKLLGAGAFAFHP 107 (1525)
Q Consensus 47 k~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l----~t---L-----------~-H~~~V~~~g~~sVaFsP 107 (1525)
...|.-+|.+++++|++.+.++++.|++|-=|++.+++.. .+ + + |...+. +++.++
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil-----~~avS~ 212 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL-----TLAVSS 212 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE-----EEEEcC
Confidence 3349999999999999999999999999999998877633 11 0 1 445566 999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCcccccc
Q 000424 108 TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFE 187 (1525)
Q Consensus 108 dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~ 187 (1525)
||+||++|+.|..|.|||.++. ..+..+.+|...|.+++|--.-.-+.++|.|.+|++|++....- +-..|-+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-----vetlyGH 285 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-----VETLYGH 285 (479)
T ss_pred CCcEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-----HHHHhCC
Confidence 9999999999999999999974 22233679999999999998888899999999999999872210 0011222
Q ss_pred CCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccCCcccc
Q 000424 188 PASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASV 267 (1525)
Q Consensus 188 p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~ 267 (1525)
+++|..+| .|+ ..-++. .++-|.+.++|+-.+- .|+ ++++|.++.-++
T Consensus 286 qd~v~~Id---aL~--------------------reR~vt------VGgrDrT~rlwKi~ee-sql--ifrg~~~sidcv 333 (479)
T KOG0299|consen 286 QDGVLGID---ALS--------------------RERCVT------VGGRDRTVRLWKIPEE-SQL--IFRGGEGSIDCV 333 (479)
T ss_pred ccceeeec---hhc--------------------ccceEE------eccccceeEEEecccc-cee--eeeCCCCCeeeE
Confidence 33333333 111 122222 5667777787876443 344 477887654221
Q ss_pred hhhhcccCCCcccchhhHHHHHHHhhhccCCCceeeehhhhhceeeeeeccccc
Q 000424 268 LKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHA 321 (1525)
Q Consensus 268 ~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s~~~d~~~ 321 (1525)
+-+.....+.+. .++.+.+|++.|+.++++ +...|+
T Consensus 334 -----~~In~~HfvsGS------------dnG~IaLWs~~KKkplf~-~~~AHg 369 (479)
T KOG0299|consen 334 -----AFINDEHFVSGS------------DNGSIALWSLLKKKPLFT-SRLAHG 369 (479)
T ss_pred -----EEecccceeecc------------CCceEEEeeecccCceeE-eecccc
Confidence 112221122222 577899999999999999 333343
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-12 Score=146.27 Aligned_cols=229 Identities=17% Similarity=0.209 Sum_probs=157.7
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCcc---------------ceEEc-cCCCCCeEEEEEcCCCCEEEEEEC
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA---------------PTKIK-TDLKKPIVNLACHPRLPVLYVAYA 71 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~---------------~t~ik-~~H~~~V~sIaf~P~g~~LaSGs~ 71 (1525)
+-+-++++|+..++|.++ ++.++.-|....+-+. +.+.. ..|.+.|.+++.++++++|++|+.
T Consensus 144 s~~~vals~d~~~~fsas-k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSAS-KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred cceEEEeeccccceeecC-CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence 346688999999887665 5667765554222110 11111 258899999999999999999999
Q ss_pred CCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEc
Q 000424 72 DGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL 150 (1525)
Q Consensus 72 DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafs 150 (1525)
|..|.|||.++.+.++++. |.+.|. +++|--.-.-++++|.|++|++|+++. ..++.++-+|.+.|.+|.-.
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~-----~L~fr~gt~~lys~s~Drsvkvw~~~~--~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVS-----SLAFRKGTSELYSASADRSVKVWSIDQ--LSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred CceEEEecCcccchhhccccccccee-----eeeeecCccceeeeecCCceEEEehhH--hHHHHHHhCCccceeeechh
Confidence 9999999999999999999 999999 999988878899999999999999983 44444455899999988888
Q ss_pred CCCCEEEEEECCCCeeEEEee----eecCCCCCCCccccccCC-------Ccccccccccc--------cccCCcce--e
Q 000424 151 PMLRLLVTLCRDGSLQVWKTR----VIINPNRPPMQANFFEPA-------SIESIDIPRIL--------SQQGGEAV--Y 209 (1525)
Q Consensus 151 Pdg~lLaSgS~DgtIkIWDlr----~~~~p~~~~~~a~~f~p~-------~Iesldi~~iL--------s~~gG~~v--y 209 (1525)
..++.+..|+.|+|+++|++. .+..++.....+..|... ..-++-+...+ ...+|... -
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~ 375 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD 375 (479)
T ss_pred cccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence 888877777789999999874 233333322222111110 00000000000 00011000 0
Q ss_pred cCC---CeeEEEEecCCCeEEEEecccccCCcccccccccccCc
Q 000424 210 PLP---RVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGR 250 (1525)
Q Consensus 210 ~l~---~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~ 250 (1525)
++. =|+.++.-|..++++ +++-+..+|.|...+|-
T Consensus 376 ~~~~~~Witsla~i~~sdL~a------sGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 376 PVNGNFWITSLAVIPGSDLLA------SGSWSGCVRLWKIEDGL 413 (479)
T ss_pred ccccccceeeeEecccCceEE------ecCCCCceEEEEecCCc
Confidence 000 155688888888888 88889999999988883
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=131.15 Aligned_cols=117 Identities=13% Similarity=0.144 Sum_probs=105.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeC--CCcEEEEe
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDR--RGTLLAWD 125 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~--DgtIrVWD 125 (1525)
+..+.|.++.|+++|.++++++.|-+++|||..++++++++. +.-.+. .++|......++.++. |.+||.-+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-----~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-----LACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-----EEEEecCCceEEEccCCCCCceEEEE
Confidence 357899999999999999999999999999999999999999 777788 8899777777777774 99999999
Q ss_pred CCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 126 VSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 126 v~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
+. ..+++..+.||...|++++.+|-+..++|+|.|++|++||+|+
T Consensus 87 l~--dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 87 LH--DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV 131 (311)
T ss_pred ee--cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence 98 4667778889999999999999999999999999999999994
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=136.89 Aligned_cols=153 Identities=17% Similarity=0.242 Sum_probs=117.9
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-----
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY----- 83 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~----- 83 (1525)
-.-|+++|.+|-+|++.+.+.++.+|+... +++...+.. ++.=..+.|+|+|.+++.+..|..|...|.++.
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~~--~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIET--KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEecc-CcEEEEeec--cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 346899999999999999999999999644 444433333 334445678888888888887777776665532
Q ss_pred ------------------------------------cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeC
Q 000424 84 ------------------------------------AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 84 ------------------------------------k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv 126 (1525)
+++.+++ |..... ||.|+|+|+|+++|+.|..+.+||+
T Consensus 144 ~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi-----cI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 144 EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI-----CIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE-----EEEECCCCceEeeccccceeeccCh
Confidence 3444555 666666 9999999999999999999999999
Q ss_pred CCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 127 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 127 ~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+. --+...+..|.-+|+.++|+.+|++||+||+|..|-|=++.
T Consensus 219 ~E--LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 219 DE--LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred hH--hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 94 33444456899999999999999999999999988654443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=151.72 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=114.7
Q ss_pred CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCcEEEEEecCCcee
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR-LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIK 96 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~-g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~ 96 (1525)
....+++++-|++|++|... .+...+++. |.+.|+||+|||. +++|++||.|+.||||++...+++.-....+-|+
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~--~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT 455 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPG--RKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT 455 (712)
T ss_pred cCCeeEeccccccEEeecCC--CcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe
Confidence 44556677789999999953 445556666 9999999999995 5699999999999999999988887777558899
Q ss_pred ecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCcee---eEe----ecccCcCeEEEEEcCCCC-EEEEEECCCCeeEE
Q 000424 97 LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM---IGI----IQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVW 168 (1525)
Q Consensus 97 ~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~---i~i----l~gH~~~VtsIafsPdg~-lLaSgS~DgtIkIW 168 (1525)
+++|.|||++.+.|+.+|.+++|++....... +.. -..|. .|+++.|.|... .++..|.|..|||+
T Consensus 456 -----Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 456 -----AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred -----eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEE
Confidence 99999999999999999999999988521111 100 01234 899999998654 35555889999999
Q ss_pred Eee
Q 000424 169 KTR 171 (1525)
Q Consensus 169 Dlr 171 (1525)
|.+
T Consensus 530 d~~ 532 (712)
T KOG0283|consen 530 DGR 532 (712)
T ss_pred ecc
Confidence 995
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=147.70 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=126.8
Q ss_pred CCcEEEEEEcCC--CCEEEEEEeccceEEEEEeecCC-ccce-EEcc-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000424 6 VDTEVHLALTPL--QPVVFFGFHRRMSVTVVGTVEGG-RAPT-KIKT-DLKKPIVNLACHPRLPVLYVAYADGLIRAYNI 80 (1525)
Q Consensus 6 ~~~e~hLA~hP~--~p~Vf~s~~~d~sV~v~dtve~g-k~~t-~ik~-~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi 80 (1525)
.-||+..|+.-. ...||++. +.-|++|+....+ +.+. .+.- .....|+++..+|+|+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG--kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC--CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 458998887744 34566654 7889999975443 2221 1111 13578999999999999999999999999998
Q ss_pred CCCcEEEEEe---cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEE
Q 000424 81 HTYAVHYTLQ---LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV 157 (1525)
Q Consensus 81 ~t~k~l~tL~---H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLa 157 (1525)
....+....+ ..-... +++.+||.+..+++..||.|.|||+. ...+++.+++|.+.+.||..+++|..|-
T Consensus 495 AapTprikaeltssapaCy-----ALa~spDakvcFsccsdGnI~vwDLh--nq~~VrqfqGhtDGascIdis~dGtklW 567 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACY-----ALAISPDAKVCFSCCSDGNIAVWDLH--NQTLVRQFQGHTDGASCIDISKDGTKLW 567 (705)
T ss_pred cCCCcchhhhcCCcchhhh-----hhhcCCccceeeeeccCCcEEEEEcc--cceeeecccCCCCCceeEEecCCCceee
Confidence 8665433333 112334 78999999999999999999999999 5778888999999999999999999999
Q ss_pred EEECCCCeeEEEeeeecC
Q 000424 158 TLCRDGSLQVWKTRVIIN 175 (1525)
Q Consensus 158 SgS~DgtIkIWDlr~~~~ 175 (1525)
||+.|.+||.||+|....
T Consensus 568 TGGlDntvRcWDlregrq 585 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQ 585 (705)
T ss_pred cCCCccceeehhhhhhhh
Confidence 999999999999996554
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=150.46 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=109.2
Q ss_pred EEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCc
Q 000424 22 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGA 100 (1525)
Q Consensus 22 f~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~ 100 (1525)
+.+++.|.++++|-..+. ...+. +|+..|.+++.-|.+ .++|||.|.+||+|.- ++++++|. |.+.|+
T Consensus 115 ~iSgSWD~TakvW~~~~l---~~~l~-gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR---- 183 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGEL---VYSLQ-GHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR---- 183 (745)
T ss_pred eEecccccceEEecchhh---hcccC-CcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhhee----
Confidence 344455667766653222 22234 499999999999988 8899999999999964 78999999 999999
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 101 GAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 101 ~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.+++-+++ .++|++.||.|+.||+. ..++-.+.+|++.|.+++..+++..++||++|++++||+..
T Consensus 184 -gL~vl~~~-~flScsNDg~Ir~w~~~---ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 184 -GLAVLDDS-HFLSCSNDGSIRLWDLD---GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -eeEEecCC-CeEeecCCceEEEEecc---CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99998875 57899999999999996 33344466999999999988888899999999999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-12 Score=136.19 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=109.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
.|+++|+.+.|+-+|++.++++.|++||+|+...+.+++++. |...|. .++.+.|...+++|+.|+.|.+||++
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-----D~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-----DAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-----eccccccccccccCCCCceEEEEEcc
Confidence 389999999999999999999999999999999999999999 999999 99999999999999999999999999
Q ss_pred CCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 128 t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
+ .+...-+.+|...|+.+.|+.+...++|||-|.++++||-|.
T Consensus 90 T--Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 90 T--GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred c--CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence 6 444455679999999999999999999999999999999884
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=147.64 Aligned_cols=155 Identities=17% Similarity=0.251 Sum_probs=129.3
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
.+.-..+.++|.+..+.+|.. +..|.+||. +..+....+...|...|.+++|+ +..+.+|+.|+.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~-~g~v~iwD~-~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTS-DGTVQIWDV-KEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeec-CCeEEEEeh-hhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 455667899999999988885 888999994 44455555555599999999998 67899999999999999998866
Q ss_pred EEE-Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC-CCEEEEE--E
Q 000424 86 HYT-LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTL--C 160 (1525)
Q Consensus 86 l~t-L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd-g~lLaSg--S 160 (1525)
... +. |...|. .++|++|+.++++|+.|+.+.|||...... ...+..|...|..++|+|. ..+||+| +
T Consensus 293 ~~~~~~~H~qeVC-----gLkws~d~~~lASGgnDN~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 293 VVSTLQGHRQEVC-----GLKWSPDGNQLASGGNDNVVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred hhhhhhcccceee-----eeEECCCCCeeccCCCccceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence 555 66 999999 999999999999999999999999964322 2235699999999999995 5588886 5
Q ss_pred CCCCeeEEEee
Q 000424 161 RDGSLQVWKTR 171 (1525)
Q Consensus 161 ~DgtIkIWDlr 171 (1525)
.|++|++||..
T Consensus 366 ~D~~i~fwn~~ 376 (484)
T KOG0305|consen 366 ADRCIKFWNTN 376 (484)
T ss_pred cccEEEEEEcC
Confidence 69999999987
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-12 Score=142.59 Aligned_cols=157 Identities=13% Similarity=0.192 Sum_probs=128.1
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-c
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-A 84 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~-k 84 (1525)
.|+...+.|+|....|+.++..+.++.++|.... .+..++.. +-.-+.|+|+|..-.|.+|+.|..+..+|++.. .
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQA-SPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR 263 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEecccC-Cccceeee--eccccceecCccccceeeccccccceehhhhhhcc
Confidence 4677899999999999999999999999997554 44444333 345578999996668999999999999998765 4
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCC
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dg 163 (1525)
++.... |.+.|. +|+|||.|+-+++||.|.+||||.++.....-+ ..+...+.|.|+.|+-|.++++|||+|+
T Consensus 264 p~~v~~dhvsAV~-----dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-YhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 264 PLNVHKDHVSAVM-----DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-YHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred cchhhcccceeEE-----EeccCCCcchhccccccceEEEeecCCCcchhh-hhHhhhheeeEEEEeccccEEEecCCCc
Confidence 566666 999999 999999999999999999999999985321111 1223356799999999999999999999
Q ss_pred CeeEEEee
Q 000424 164 SLQVWKTR 171 (1525)
Q Consensus 164 tIkIWDlr 171 (1525)
.|++|..+
T Consensus 338 nvRlWka~ 345 (433)
T KOG0268|consen 338 NVRLWKAK 345 (433)
T ss_pred ceeeeecc
Confidence 99999876
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=124.54 Aligned_cols=154 Identities=18% Similarity=0.279 Sum_probs=113.2
Q ss_pred CcEEEEEEcCCCCEEEEEEecc--c-------eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEE--ECCCcE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRR--M-------SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA--YADGLI 75 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d--~-------sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSG--s~DgtI 75 (1525)
-.++.+.|||.+..+++-.+.+ . ...++...+.......+.....++|.+++|+|++..|++. ..+..|
T Consensus 6 ~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 6 VDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred cceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 3678999999999998887732 1 1223332234445555544456789999999999987654 457899
Q ss_pred EEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeC---CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC
Q 000424 76 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 152 (1525)
Q Consensus 76 rIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~---DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd 152 (1525)
.+||++ ++.+.++ +...++ .|.|+|+|+++++++. .|.|.+||+++ ...+.. .+...++.++|+|+
T Consensus 86 ~lyd~~-~~~i~~~-~~~~~n-----~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~--~~~~~~t~~~WsPd 154 (194)
T PF08662_consen 86 TLYDVK-GKKIFSF-GTQPRN-----TISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKIST--FEHSDATDVEWSPD 154 (194)
T ss_pred EEEcCc-ccEeEee-cCCCce-----EEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeec--cccCcEEEEEEcCC
Confidence 999996 5555555 456778 9999999999999874 46799999994 344422 22345789999999
Q ss_pred CCEEEEEEC------CCCeeEEEee
Q 000424 153 LRLLVTLCR------DGSLQVWKTR 171 (1525)
Q Consensus 153 g~lLaSgS~------DgtIkIWDlr 171 (1525)
|++|+|++. |..++||+..
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec
Confidence 999999864 7899999975
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=130.29 Aligned_cols=161 Identities=14% Similarity=0.195 Sum_probs=123.9
Q ss_pred ccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCC-----------cc--ceEEccCCCCCeEEEEEcCCCC-EEEEE
Q 000424 4 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-----------RA--PTKIKTDLKKPIVNLACHPRLP-VLYVA 69 (1525)
Q Consensus 4 ~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g-----------k~--~t~ik~~H~~~V~sIaf~P~g~-~LaSG 69 (1525)
+-+++.=.|.+-|+.-..+++...+.++.+++.-... ++ ......+|+-.|.++.|-|-+. +|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3344455677888755555666678999888852211 11 1112235778899999999654 89999
Q ss_pred ECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCC---CEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEE
Q 000424 70 YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL---EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITS 146 (1525)
Q Consensus 70 s~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg---~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~Vts 146 (1525)
+.|.++|+||..+.+....|+-++.|. +-+++|-. ..+++|.+|-.|++-|+.+ ..+..+++||.+.|.+
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VY-----shamSp~a~sHcLiA~gtr~~~VrLCDi~S--Gs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVY-----SHAMSPMAMSHCLIAAGTRDVQVRLCDIAS--GSFSHTLSGHRDGVLA 193 (397)
T ss_pred cccceEEEeecccceeeEEeecCceee-----hhhcChhhhcceEEEEecCCCcEEEEeccC--CcceeeeccccCceEE
Confidence 999999999999999999998666677 77888843 3567777999999999996 4455558899999999
Q ss_pred EEEcCCCCE-EEEEECCCCeeEEEee
Q 000424 147 VAWLPMLRL-LVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 147 IafsPdg~l-LaSgS~DgtIkIWDlr 171 (1525)
+.|+|...+ |+|||.||.|++||+|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIR 219 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEee
Confidence 999998775 7899999999999998
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=144.76 Aligned_cols=118 Identities=20% Similarity=0.366 Sum_probs=105.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--------CCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH--------TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRG 119 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~--------t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg 119 (1525)
.|.+-|+.++|||..+.|++|+.|+++++|+++ ..+++.+|. |..+|. ||++.+.+.++++|+.||
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl-----~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL-----CVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceE-----EEEecCCceEEEeeccCc
Confidence 388999999999999999999999999999983 236789999 999999 999999999999999999
Q ss_pred cEEEEeCCCC--------CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 120 TLLAWDVSIE--------RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 120 tIrVWDv~t~--------~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+|+.|++-.. .....+.++||...|+.+++|+....|++||.|||+++|+..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 9999966421 223446788999999999999999999999999999999876
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=138.86 Aligned_cols=223 Identities=14% Similarity=0.202 Sum_probs=132.9
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC---
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT--- 82 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t--- 82 (1525)
.||-..||=||.+...+++.+.|+.|.+|+. +...+...+.. |.+.|++|+++. ..++++++|.+||.|-+..
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~A-H~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~ 141 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKA-HEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPL 141 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeec-ccCceeeEEecc--cceEEecCCcceeeeeccCCcc
Confidence 4788899999999888888889999999995 44444555555 999999999986 6788889999999887321
Q ss_pred -----------------------------------CcEEEEEe-cCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEe
Q 000424 83 -----------------------------------YAVHYTLQ-LDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWD 125 (1525)
Q Consensus 83 -----------------------------------~k~l~tL~-H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWD 125 (1525)
..++..+. ..+.+. ++.|+|-. ..|++|+.|++|.++|
T Consensus 142 ~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~-----svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 142 HTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSIS-----SVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred eeeeccccccccccccccccccccCceeeecccccCCccceeecCCCcee-----EEecCCCcchheeeeccCCceEEEe
Confidence 11233333 334555 88999965 4566777999999999
Q ss_pred CCCC--CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCC---CCCCCc---cccccCCCccccc--
Q 000424 126 VSIE--RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINP---NRPPMQ---ANFFEPASIESID-- 195 (1525)
Q Consensus 126 v~t~--~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p---~~~~~~---a~~f~p~~Iesld-- 195 (1525)
+++. .+.++ + ...-+.|+|+|..-.|++|++|..+..+|+|.+..| +..... ..-|+|.|-+-+.
T Consensus 217 ~R~~~Pl~KVi--~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 217 LRQASPLKKVI--L---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred cccCCccceee--e---eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 9863 22222 1 112234455554444444555555555554422111 000000 0112232211110
Q ss_pred --cc-ccccccCCc--cee---cCCCeeEEEEecCCCeEEEEecccccCCccccccccccc
Q 000424 196 --IP-RILSQQGGE--AVY---PLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTRE 248 (1525)
Q Consensus 196 --i~-~iLs~~gG~--~vy---~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~e 248 (1525)
-+ ++....+|. .+| .+.+|.+|.|.-+.-++. +|+||..++.|+..-
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~------SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYII------SGSDDGNVRLWKAKA 346 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEE------ecCCCcceeeeecch
Confidence 00 000000110 012 235688899988877776 999999999998543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-09 Score=128.25 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=111.1
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
...-+||.|++..++++..+ .+.++++.++ .-...+++ |++.|++++|+.+|..||||+.|..|.+|+-+-- .
T Consensus 14 ci~d~afkPDGsqL~lAAg~--rlliyD~ndG-~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS--RLLVYDTSDG-TLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---G 86 (1081)
T ss_pred chheeEECCCCceEEEecCC--EEEEEeCCCc-cccccccc-ccceEEEEEEccCCceeccCCCceeEEEeccccc---c
Confidence 34569999999999988854 4556675554 44555666 9999999999999999999999999999985421 1
Q ss_pred EEe--cCCcee---------------e------------------cC-ceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000424 88 TLQ--LDNTIK---------------L------------------LG-AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 131 (1525)
Q Consensus 88 tL~--H~~~V~---------------~------------------~g-~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~ 131 (1525)
+++ |.+.|- + +. ..+++|..||++++.|-.||||.+-+-..+..
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 111 221111 0 00 14778999999999999999999876553322
Q ss_pred eeeEeecccCcCeEEEEEcCCC-----CEEEEEECCCCeeEEEee
Q 000424 132 SMIGIIQVGSQPITSVAWLPML-----RLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 132 s~i~il~gH~~~VtsIafsPdg-----~lLaSgS~DgtIkIWDlr 171 (1525)
-.+.---|.+.+|.+|+|+|.. ..++......|+..+.+.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 2222222467899999999963 367777777777777766
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-11 Score=134.24 Aligned_cols=149 Identities=17% Similarity=0.271 Sum_probs=120.2
Q ss_pred CCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC--EEEEEECCCcEEEEEcCCCcEEEEEe-cCC
Q 000424 17 LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP--VLYVAYADGLIRAYNIHTYAVHYTLQ-LDN 93 (1525)
Q Consensus 17 ~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~--~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~ 93 (1525)
++|++..|+ .|.+|.++|. ...+..-.+.. |.+.|+++.|.+.-. +|++|+.||.|.+|+..++.++.+++ |.+
T Consensus 52 s~~~~aSGs-sDetI~IYDm-~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~ 128 (362)
T KOG0294|consen 52 SGPYVASGS-SDETIHIYDM-RKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG 128 (362)
T ss_pred cceeEeccC-CCCcEEEEec-cchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc
Confidence 478886665 6899999985 33333334444 999999999998765 89999999999999999999999999 999
Q ss_pred ceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCc----------e----------e--------------------
Q 000424 94 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP----------S----------M-------------------- 133 (1525)
Q Consensus 94 ~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~----------s----------~-------------------- 133 (1525)
.|+ .++.||.++.-++.+.|++++.||+-..+. . +
T Consensus 129 ~Vt-----~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 129 QVT-----DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR 203 (362)
T ss_pred ccc-----eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh
Confidence 999 999999999999999999999999743100 0 0
Q ss_pred --------------------------------------eEeecccCcCeEEEEE--cCCCCEEEEEECCCCeeEEEeeee
Q 000424 134 --------------------------------------IGIIQVGSQPITSVAW--LPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 134 --------------------------------------i~il~gH~~~VtsIaf--sPdg~lLaSgS~DgtIkIWDlr~~ 173 (1525)
...+.+|..+|.++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 204 ~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 204 EIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 0123478888888874 467889999999999999999843
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.3e-11 Score=133.52 Aligned_cols=184 Identities=20% Similarity=0.256 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccc----eEE--ccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcC
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP----TKI--KTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIH 81 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~----t~i--k~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~ 81 (1525)
-..|+|+|++..+|+|. ...|+++++...++.. ++. +.+..+-+.+++|||... .+++|+.-.++-||.-.
T Consensus 161 AhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~ 238 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD 238 (406)
T ss_pred heeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence 35799999999999987 4578888885544322 111 122366789999999876 89999999999999999
Q ss_pred CCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeEeecccCcC-eEEE--EEcCCCCEE
Q 000424 82 TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQP-ITSV--AWLPMLRLL 156 (1525)
Q Consensus 82 t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~il~gH~~~-VtsI--afsPdg~lL 156 (1525)
.+.+++.+- |.+.|+ .++|+++|+.|++|+ .|-.|.+||++.. ..++-.+..|... -..| ...|++++|
T Consensus 239 ~~~pl~llggh~gGvT-----hL~~~edGn~lfsGaRk~dkIl~WDiR~~-~~pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 239 GRRPLQLLGGHGGGVT-----HLQWCEDGNKLFSGARKDDKILCWDIRYS-RDPVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred CCCceeeecccCCCee-----eEEeccCcCeecccccCCCeEEEEeehhc-cchhhhhhhhccCccceEEEecCCCCcee
Confidence 999999999 999999 999999999999999 6889999999953 2332234455442 2234 446899999
Q ss_pred EEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEE
Q 000424 157 VTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 227 (1525)
Q Consensus 157 aSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlia 227 (1525)
++|+.||.|++||++...++.. ++. .|. .+++.|++||.+.+.|
T Consensus 313 asG~tdG~V~vwdlk~~gn~~s--------------------v~~------~~s-d~vNgvslnP~mpila 356 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNEVS--------------------VTG------NYS-DTVNGVSLNPIMPILA 356 (406)
T ss_pred eccCCCccEEEEecCCCCCccc--------------------ccc------ccc-ccccceecCcccceee
Confidence 9999999999999875443100 000 111 2678899999988877
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-09 Score=128.34 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=96.4
Q ss_pred ccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEE
Q 000424 27 RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAF 105 (1525)
Q Consensus 27 ~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaF 105 (1525)
+|..+.+... .++....+. .|.+.|.+-.|+|+|.-|++++.||.||||+- ++-.-.++- ...+|. |++|
T Consensus 83 ~DGkf~il~k--~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~-----c~~W 153 (737)
T KOG1524|consen 83 NDGRFVILNK--SARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR-----CARW 153 (737)
T ss_pred CCceEEEecc--cchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeE-----EEEE
Confidence 4555544432 223333333 39999999999999999999999999999974 444444444 667899 9999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 106 HPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 106 sPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
-|+.+.++-+.. +.+.|=.+.-. ..++ -+.+|.+-|.|+.|++...+++||++|-..+|||.-
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n-~k~i-~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAAN-SKII-RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccc-ccee-EEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 998766554433 23444444421 2222 367999999999999999999999999999999964
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-11 Score=146.73 Aligned_cols=153 Identities=17% Similarity=0.275 Sum_probs=131.4
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEE--ccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI--KTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~i--k~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
-.+++++.+-++|.|.+ ..+|.+++.-.|.. .... ...|+++|+++++...++.+++++.||.++.||.+....+.
T Consensus 452 ~av~vs~CGNF~~IG~S-~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~ 529 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYS-KGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK 529 (910)
T ss_pred EEEEEeccCceEEEecc-CCeEEEEEcccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence 45788999999998875 78888888644421 1111 12599999999999999999999999999999999988888
Q ss_pred EEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeE
Q 000424 88 TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV 167 (1525)
Q Consensus 88 tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkI 167 (1525)
.++...++. ++.+|.....++.+.+|-.|+++|+. .+.++..+.+|.+.|++++|||||++|+++|.|++|++
T Consensus 530 ~l~l~~~~~-----~iv~hr~s~l~a~~~ddf~I~vvD~~--t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 530 SLRLGSSIT-----GIVYHRVSDLLAIALDDFSIRVVDVV--TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred eeccCCCcc-----eeeeeehhhhhhhhcCceeEEEEEch--hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 888777788 88999999999999999999999999 46666677799999999999999999999999999999
Q ss_pred EEee
Q 000424 168 WKTR 171 (1525)
Q Consensus 168 WDlr 171 (1525)
||+-
T Consensus 603 wDlp 606 (910)
T KOG1539|consen 603 WDLP 606 (910)
T ss_pred Eecc
Confidence 9985
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-09 Score=125.97 Aligned_cols=162 Identities=13% Similarity=0.142 Sum_probs=118.7
Q ss_pred ccCCcEEEEEEcCCCCEEEEEEeccceEEEEEe-ecCCccce-EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000424 4 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPT-KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 81 (1525)
Q Consensus 4 ~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dt-ve~gk~~t-~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~ 81 (1525)
..++..-.+|.+|.+..+.+|+++ . + +.+. +..+.... ......+++|.+++|+|++..+++||.||.||+||..
T Consensus 108 ~~gg~IWsiai~p~~~~l~Igcdd-G-v-l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDD-G-V-LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCC-c-e-EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 356678889999999999999753 3 3 2222 22222222 2222246899999999999999999999999999999
Q ss_pred CCcEEEEEe-cCCceee---cCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEE
Q 000424 82 TYAVHYTLQ-LDNTIKL---LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV 157 (1525)
Q Consensus 82 t~k~l~tL~-H~~~V~~---~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLa 157 (1525)
++..++... ..+.+.- .-+++|.|-.| ..|++|...|+|++||... .+.+..+..|...|.|++..+++.+++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~--gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF--GTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC--cchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 998777332 1111110 00237777655 4689999999999999984 455555668999999999999999999
Q ss_pred EEECCCCeeEEEee
Q 000424 158 TLCRDGSLQVWKTR 171 (1525)
Q Consensus 158 SgS~DgtIkIWDlr 171 (1525)
+++.|+.|.-+...
T Consensus 262 saGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLT 275 (691)
T ss_pred EccCCCceEEEEec
Confidence 99999998777654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-10 Score=126.02 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=125.1
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeec---CCccceEE-------ccCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE---GGRAPTKI-------KTDLKKPIVNLACHPRLPVLYVAYADGLI 75 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve---~gk~~t~i-------k~~H~~~V~sIaf~P~g~~LaSGs~DgtI 75 (1525)
.|.--.++|+|+-.-+.++.++-.++.++.... ++.+...+ ...|+-.|-++....++.++++++.|.+|
T Consensus 132 ~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i 211 (420)
T KOG2096|consen 132 YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI 211 (420)
T ss_pred CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcE
Confidence 345557899999888888888777777766532 22222222 22366778888888888999999999999
Q ss_pred EEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC---C-Ccee--eEeecccCcCeEEEE
Q 000424 76 RAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI---E-RPSM--IGIIQVGSQPITSVA 148 (1525)
Q Consensus 76 rIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t---~-~~s~--i~il~gH~~~VtsIa 148 (1525)
.|||++ ++.+.++. ....-. ..+.||+|+++++++..--|+||..-- . .+.. +-.+.||...|..++
T Consensus 212 ~lw~lk-Gq~L~~idtnq~~n~-----~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 212 CLWDLK-GQLLQSIDTNQSSNY-----DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred EEEecC-Cceeeeecccccccc-----ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence 999998 88888888 444445 678899999999999999999998642 1 1111 123679999999999
Q ss_pred EcCCCCEEEEEECCCCeeEEEeeee
Q 000424 149 WLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 149 fsPdg~lLaSgS~DgtIkIWDlr~~ 173 (1525)
|+++...++|.|.||+++|||+++.
T Consensus 286 Fsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 286 FSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eCCCcceeEEEecCCcEEEeeccce
Confidence 9999999999999999999999843
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=140.23 Aligned_cols=117 Identities=19% Similarity=0.289 Sum_probs=101.3
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCC-------cEEEEEe-cCCceeecCceeEEEeCC-CCEEEEEeC
Q 000424 48 TDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTY-------AVHYTLQ-LDNTIKLLGAGAFAFHPT-LEWLFVGDR 117 (1525)
Q Consensus 48 ~~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~-------k~l~tL~-H~~~V~~~g~~sVaFsPd-g~~LaSgS~ 117 (1525)
.+|+++|..++|+|-. ..+||||.|.+|.||.+-.+ +++..|. |...|. .|+|||. .+.|+|++.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg-----~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG-----LVQWHPTAPNVLLSAGS 152 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE-----EEeecccchhhHhhccC
Confidence 4699999999999964 57999999999999997543 4567778 999999 9999996 467889999
Q ss_pred CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 118 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 118 DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
|.+|.+||+.+. ..++. +. |...|.+++|+-+|.+|+|.+.|+.|||||.|.
T Consensus 153 Dn~v~iWnv~tg-eali~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTG-EALIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCC-ceeee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 999999999975 33332 33 999999999999999999999999999999883
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-10 Score=126.46 Aligned_cols=205 Identities=14% Similarity=0.134 Sum_probs=139.2
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----CcEEEEEe-cCCceeecCceeEEE-eC-CCCEEEEEeC
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT----YAVHYTLQ-LDNTIKLLGAGAFAF-HP-TLEWLFVGDR 117 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t----~k~l~tL~-H~~~V~~~g~~sVaF-sP-dg~~LaSgS~ 117 (1525)
.+..+|++-|.++.|++-|+.+|+|+.|++|+|||..+ ..+....+ |.++|. .|.| || -|+.++++|.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~-----rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIW-----RVVWAHPEFGQVVATCSY 81 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEE-----EEEecCccccceEEEEec
Confidence 34446999999999999999999999999999999543 35566666 999999 9999 55 4899999999
Q ss_pred CCcEEEEeCCC--C---Ccee--eEeecccCcCeEEEEEcCC--CCEEEEEECCCCeeEEEeeeecCCCCCCCccccccC
Q 000424 118 RGTLLAWDVSI--E---RPSM--IGIIQVGSQPITSVAWLPM--LRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEP 188 (1525)
Q Consensus 118 DgtIrVWDv~t--~---~~s~--i~il~gH~~~VtsIafsPd--g~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p 188 (1525)
|++++||.-.. . .... ..++..-...|+.|.|.|. |-.+++++.||++|||+.-...+-..-.++..+
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei--- 158 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI--- 158 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh---
Confidence 99999996531 1 1111 1334456788999999994 668999999999999987533322222222111
Q ss_pred CCcccccccccccccCCcceecCCCeeEEEEecC---CCeEEEEecccccCCccccccccccc-C-ceeeeeeeccccCC
Q 000424 189 ASIESIDIPRILSQQGGEAVYPLPRVRALEVHPR---LNLAVLLFANFTGGDNIKNRAAYTRE-G-RKQLFAVLQSARGS 263 (1525)
Q Consensus 189 ~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~---~Nlial~F~~~s~~Dd~~~k~~~~~e-g-~~q~~~tlq~~~~~ 263 (1525)
. .+.. .-|... .+--|+.|.|+ ..++|+.+.. .+..-.+.+++...+ + +++-+++|.+|..+
T Consensus 159 ---~-----~~~~-pp~~~~---~~~~CvsWn~sr~~~p~iAvgs~e-~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 159 ---Q-----NVID-PPGKNK---QPCFCVSWNPSRMHEPLIAVGSDE-DAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred ---h-----hccC-Cccccc---CcceEEeeccccccCceEEEEccc-CCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 0 0000 011111 12345666665 4778877766 444444555665544 4 67778889999999
Q ss_pred cccchhh
Q 000424 264 SASVLKE 270 (1525)
Q Consensus 264 ~~s~~~e 270 (1525)
++.+..+
T Consensus 226 I~di~wA 232 (361)
T KOG2445|consen 226 IRDISWA 232 (361)
T ss_pred ceeeeec
Confidence 8775433
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-10 Score=140.29 Aligned_cols=153 Identities=12% Similarity=0.168 Sum_probs=127.5
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
|---|++.|.+.+|+++. .+..|.+|........+..+.. |...|.++++. +.+|++|+.+++|.+|.+.+++.-.
T Consensus 15 G~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred ceEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhhc-cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccc
Confidence 344588999999886665 6889999987655344444443 78999999986 4599999999999999999887766
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
.+. -.-+++ +++|+.+|++++.||+|-.|++-++.+.... ..+.+|..+|.++.|+|.+.+||+.+-||+|+
T Consensus 91 iL~Rftlp~r-----~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 91 ILARFTLPIR-----DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred eeeeeeccce-----EEEEecCCcEEEeecCceeEEEEeccccchh--eeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 666 667888 9999999999999999999999998864222 23679999999999999999999999999999
Q ss_pred EEEee
Q 000424 167 VWKTR 171 (1525)
Q Consensus 167 IWDlr 171 (1525)
+||+.
T Consensus 164 iw~~~ 168 (933)
T KOG1274|consen 164 IWDLQ 168 (933)
T ss_pred EEEcc
Confidence 99997
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=133.56 Aligned_cols=140 Identities=15% Similarity=0.242 Sum_probs=115.3
Q ss_pred CEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-----cCC
Q 000424 19 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-----LDN 93 (1525)
Q Consensus 19 p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-----H~~ 93 (1525)
+..+++.|.+..+.+|+. ....+...+.. .+.|.+++.++++..+++++.|.++++.|+++.....++. ...
T Consensus 312 ~~~~~SgH~DkkvRfwD~-Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDI-RSADKTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred ceeeeecccccceEEEec-cCCceeeEeec--CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccc
Confidence 577899999999999994 34444444443 3599999999999999999999999999999999888887 223
Q ss_pred ceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecc-cCc-CeEEEEEcCCCCEEEEEECCCCeeEE
Q 000424 94 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV-GSQ-PITSVAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 94 ~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~g-H~~-~VtsIafsPdg~lLaSgS~DgtIkIW 168 (1525)
..+ .+.|||++.|+++||.||.|+||++.+.....+ ++. |.. .|++++|+|.|.++++++.++.+.+|
T Consensus 389 Dwt-----rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~--l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 389 DWT-----RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV--LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccc-----eeEECCCCceeeeccCCCcEEEEEccCceEEEE--eccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 456 899999999999999999999999996432222 222 333 69999999999999999999999999
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-10 Score=127.06 Aligned_cols=154 Identities=19% Similarity=0.327 Sum_probs=125.5
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEEcCCCcEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR---LPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~---g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
..+-|-|-..-+|++++-|.++++|++-.- .....++ .++.|++-+++|- ..++|+|..|-.|++.|+.++.+.
T Consensus 105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTl-Q~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTL-QEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred eeeEEeeecCceeecccccceEEEeecccc-eeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 345677888889999999999999997432 2222222 4678999899884 347899999999999999999999
Q ss_pred EEEe-cCCceeecCceeEEEeCCCCEE-EEEeCCCcEEEEeCCCC-------------CceeeEeecccCcCeEEEEEcC
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPTLEWL-FVGDRRGTLLAWDVSIE-------------RPSMIGIIQVGSQPITSVAWLP 151 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPdg~~L-aSgS~DgtIrVWDv~t~-------------~~s~i~il~gH~~~VtsIafsP 151 (1525)
+++. |.+.|. +|.|+|...|+ ++||.||.||+||++.- .......-.+|.+.|++++|..
T Consensus 182 H~LsGHr~~vl-----aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 182 HTLSGHRDGVL-----AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred eeeccccCceE-----EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 9999 999999 99999998875 57889999999999842 0111122347888999999999
Q ss_pred CCCEEEEEECCCCeeEEEee
Q 000424 152 MLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 152 dg~lLaSgS~DgtIkIWDlr 171 (1525)
++.++++++.|..+++|+..
T Consensus 257 d~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNME 276 (397)
T ss_pred cchhhhhccCccceEEeecc
Confidence 99999999999999999986
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=137.40 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=112.7
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCc--
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYA-- 84 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k-- 84 (1525)
-.+-|.+-| +...|++...|.++++|++-.....-..+..+|...|.+++|+|+++ .|++|+.||.|.|||++-..
T Consensus 102 AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d 180 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD 180 (720)
T ss_pred eeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh
Confidence 456788889 66666777789999999964443222334446999999999999887 68999999999999975321
Q ss_pred ------------------EEEEE-------e-cCCceeecCceeEEEeCCCCEEEEEeC-CCcEEEEeCCCC----Ccee
Q 000424 85 ------------------VHYTL-------Q-LDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIE----RPSM 133 (1525)
Q Consensus 85 ------------------~l~tL-------~-H~~~V~~~g~~sVaFsPdg~~LaSgS~-DgtIrVWDv~t~----~~s~ 133 (1525)
+...+ . |.+.+. +...+.+..|...|+++|. |+.|||||+++. ...-
T Consensus 181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~--ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF--SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hHHHHhhhhhccccCCCCCCchhhccccccccccCcee--eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 11111 1 233333 1112667788899999985 999999999963 1111
Q ss_pred eEeec--cc---CcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 134 IGIIQ--VG---SQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 134 i~il~--gH---~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
.+... .| ...+.++.....|.+|...+.|++|.+|+++.
T Consensus 259 ~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 259 RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 11111 22 34577888888888877777799999999983
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=134.30 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=103.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
..++|.+++-+|.|.+|+.|.-.|.|.+|.+.+|..+..+. |-.+|+ |+.|+-||.+|+|||.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-----cL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-----CLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-----EEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 46789999999999999888899999999999999999999 999999 999999999999999999999998764
Q ss_pred C-------CceeeEeecccCcCeEEEEEcCC--CCEEEEEECCCCeeEEEee
Q 000424 129 E-------RPSMIGIIQVGSQPITSVAWLPM--LRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 129 ~-------~~s~i~il~gH~~~VtsIafsPd--g~lLaSgS~DgtIkIWDlr 171 (1525)
- .......+..|.-+|+++...+. ..+++|+|.|.+||+||+.
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 1 12233457899999999887765 4689999999999999997
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-10 Score=126.21 Aligned_cols=121 Identities=14% Similarity=0.233 Sum_probs=89.7
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE--EEEEe---cCCceeecCceeEEEeCCCCEEEEE-eCC
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV--HYTLQ---LDNTIKLLGAGAFAFHPTLEWLFVG-DRR 118 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~--l~tL~---H~~~V~~~g~~sVaFsPdg~~LaSg-S~D 118 (1525)
.+++ |++.|++++|+.+|+.|++++.|++||+||++++.. .+.++ .-+.-+ .|.|.||.+-++.. -..
T Consensus 81 ~LKg-H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-----~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 81 VLKG-HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-----RVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhc-cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-----EEEECCCcceEEEEEccC
Confidence 3444 999999999999999999999999999999987531 12222 112334 89999998765544 477
Q ss_pred CcEEEEeCCCC-----Cceee-----EeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 119 GTLLAWDVSIE-----RPSMI-----GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 119 gtIrVWDv~t~-----~~s~i-----~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.+++||-+... ....+ .+...|.-.|-.+-.-..+.+|+|||.|.+|.+||++
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK 217 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC
Confidence 78999976531 11111 1234566677778888889999999999999999998
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=118.73 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=132.4
Q ss_pred ccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccC-C-----CCCeEEEEEcCCCCEEEEEECCCcEEE
Q 000424 4 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD-L-----KKPIVNLACHPRLPVLYVAYADGLIRA 77 (1525)
Q Consensus 4 ~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~-H-----~~~V~sIaf~P~g~~LaSGs~DgtIrI 77 (1525)
+|+-+--.|++-.=.-++|.+.+.+.+|.+|+..-. .++..+-.+ | +..|.+++..|.|++|++|..|....+
T Consensus 179 ~sghtghilalyswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 179 LSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred ecCCcccEEEEEEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 456666677777777889999999999999996332 233322221 2 356999999999999999999999999
Q ss_pred EEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC----CceeeEeecccCcCeEEEEEcCC
Q 000424 78 YNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE----RPSMIGIIQVGSQPITSVAWLPM 152 (1525)
Q Consensus 78 WDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~----~~s~i~il~gH~~~VtsIafsPd 152 (1525)
||++.++.+..+. |...|+ ||.|+|...|+++||.|..|++=|++.. ...++ .-.|...+-.+.|||.
T Consensus 258 ydirg~r~iq~f~phsadir-----~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v--v~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHSADIR-----CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV--VAEHKDKAIQCRWHPQ 330 (350)
T ss_pred EEeeCCceeeeeCCCcccee-----EEEeCCCceEEEEecccceEEEeecccchhhcCceEE--EEeccCceEEEEecCc
Confidence 9999999999999 999999 9999999999999999999999999852 22333 4578999999999999
Q ss_pred CCEEEEEECCCCeeEEEe
Q 000424 153 LRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 153 g~lLaSgS~DgtIkIWDl 170 (1525)
.--|++.|.|.++.+|-+
T Consensus 331 d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWAL 348 (350)
T ss_pred cceeeeccCcceEEEecc
Confidence 988999999999999965
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-09 Score=116.66 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=110.6
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcEEEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV-AYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaS-Gs~DgtIrIWDi~t~k~l~t 88 (1525)
..++|+|++..++++...+..+.+|+.. .+.....+.. | ..+..++|+|+++.+++ ++.|+.|++||+.+.+.+..
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~-~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTLPS-G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEeccC-C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 3589999999888777677888888853 3333223333 3 33577899999997655 45689999999999888887
Q ss_pred EecCCceeecCceeEEEeCCCCEEEEEeCCC-cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEE-EEECCCCee
Q 000424 89 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG-TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV-TLCRDGSLQ 166 (1525)
Q Consensus 89 L~H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg-tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLa-SgS~DgtIk 166 (1525)
+.+...+. +++|+|++.++++++.++ .+.+||..+. ...... .+...+.+++|+|++.+|+ +++.|+.|+
T Consensus 111 ~~~~~~~~-----~~~~~~dg~~l~~~~~~~~~~~~~d~~~~--~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 111 IPVGVEPE-----GMAVSPDGKIVVNTSETTNMAHFIDTKTY--EIVDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVS 182 (300)
T ss_pred eeCCCCcc-----eEEECCCCCEEEEEecCCCeEEEEeCCCC--eEEEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEE
Confidence 77444567 899999999999988765 5677898753 222111 1233567899999999875 555699999
Q ss_pred EEEeee
Q 000424 167 VWKTRV 172 (1525)
Q Consensus 167 IWDlr~ 172 (1525)
+||++.
T Consensus 183 i~d~~~ 188 (300)
T TIGR03866 183 VIDVAT 188 (300)
T ss_pred EEEcCc
Confidence 999863
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-10 Score=133.95 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=114.4
Q ss_pred cCCCCEEEEEEeccceEEEEEeecCCc----cceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE--
Q 000424 15 TPLQPVVFFGFHRRMSVTVVGTVEGGR----APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT-- 88 (1525)
Q Consensus 15 hP~~p~Vf~s~~~d~sV~v~dtve~gk----~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t-- 88 (1525)
+|...-+|.-+..+..|.+.++....- ..++...-|...|..+.|-|....|++++.|.++|+||+++.++...
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeeccee
Confidence 355667777777888888887632211 11122224999999999999667899999999999999999988766
Q ss_pred Ee-cCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEeCCCCC-------cee------------------eEeecccC
Q 000424 89 LQ-LDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIER-------PSM------------------IGIIQVGS 141 (1525)
Q Consensus 89 L~-H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWDv~t~~-------~s~------------------i~il~gH~ 141 (1525)
+- |...|. +++|+|+. ..+++|+.||.|.|||++-.. ..+ +....+|.
T Consensus 140 ~~GH~~Svk-----S~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 140 NLGHTGSVK-----SECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecccccccc-----hhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 55 999999 99999965 567788899999999987310 000 01123455
Q ss_pred cCeEE---EEEcCCCCEEEEEEC-CCCeeEEEeee
Q 000424 142 QPITS---VAWLPMLRLLVTLCR-DGSLQVWKTRV 172 (1525)
Q Consensus 142 ~~Vts---IafsPdg~lLaSgS~-DgtIkIWDlr~ 172 (1525)
..|.+ +.+..|...|||++. |++|||||+|.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 55665 667778889999988 99999999994
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-10 Score=131.80 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=121.5
Q ss_pred EEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcE-EEEEe
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAV-HYTLQ 90 (1525)
Q Consensus 13 A~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~-l~tL~ 90 (1525)
++.-.-.-|+++.+-+.+|++|+ ++.+++...+.. |.+.|.+++|||..+ +|++||.|++|++.|.+.... -...+
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD-~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWD-VDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred HhccccceeEEecCCCceEEEEE-cCCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 33344567788888899999999 577788777776 999999999999876 799999999999999985322 22333
Q ss_pred cCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC-EEEEEECCCCeeEE
Q 000424 91 LDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVW 168 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~DgtIkIW 168 (1525)
-.+.|- .++|+|.. ..++++.+||+|+-+|.|.. ...+-++++|...|.++++++.-+ +++|+|.|++|++|
T Consensus 328 ~~g~VE-----kv~w~~~se~~f~~~tddG~v~~~D~R~~-~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 328 FDGEVE-----KVAWDPHSENSFFVSTDDGTVYYFDIRNP-GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred eccceE-----EEEecCCCceeEEEecCCceEEeeecCCC-CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 567788 89999865 56777779999999999964 233345789999999999998654 68899999999999
Q ss_pred Eee
Q 000424 169 KTR 171 (1525)
Q Consensus 169 Dlr 171 (1525)
++.
T Consensus 402 ~~~ 404 (463)
T KOG0270|consen 402 KFD 404 (463)
T ss_pred eec
Confidence 986
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=139.53 Aligned_cols=155 Identities=18% Similarity=0.294 Sum_probs=127.1
Q ss_pred cCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-C
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT-Y 83 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t-~ 83 (1525)
|.+.-.-+.|||..|++|++. ..+|.+++... ...+.++.. -...|.+++.||.|..|+.|+.|+.+..+|+.- .
T Consensus 565 skG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~k-qelvKkL~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSK-QELVKKLLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred cCCceeEEEecCCCceEEEEe--ccceEEEehhH-HHHHHHHhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 456677899999999999997 45777778644 334444444 467899999999999999999999999999864 4
Q ss_pred cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC-----Ccee--eEeecccCcC----eEEEEEcC
Q 000424 84 AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-----RPSM--IGIIQVGSQP----ITSVAWLP 151 (1525)
Q Consensus 84 k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~-----~~s~--i~il~gH~~~----VtsIafsP 151 (1525)
++.+++. |...++ +|+||+..+.++||++||++.|+--.-+ .+-+ +..+.+|... |..+.|||
T Consensus 641 kPyk~lr~H~~avr-----~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 641 KPYKTLRLHEKAVR-----SVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred chhHHhhhhhhhhh-----hhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence 7888899 999999 9999999999999999999999854322 1111 2456788766 88999999
Q ss_pred CCCEEEEEECCCCeeEE
Q 000424 152 MLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 152 dg~lLaSgS~DgtIkIW 168 (1525)
..++|+|++.||+|++|
T Consensus 716 ~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEEecCCCceEEee
Confidence 99999999999999999
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=138.78 Aligned_cols=115 Identities=26% Similarity=0.425 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCC-------cEEEEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCc
Q 000424 51 KKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTY-------AVHYTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGT 120 (1525)
Q Consensus 51 ~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~-------k~l~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~Dgt 120 (1525)
...|+.+.|+|-+ ..||++++||.|+||.+..+ .+-..+. |...|+ ++.||| -...|++++.|.+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-----slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-----SLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-----EEEecchhhhHhhhhhccce
Confidence 3568999999955 47999999999999997643 4556777 999999 999999 4678899999999
Q ss_pred EEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 121 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 121 IrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
|++||+++....+. +.+|.+.|.+++|+|+|+.++|.+.||+|++++.|.
T Consensus 702 i~lWDl~~~~~~~~--l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 702 IELWDLANAKLYSR--LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred eeeeehhhhhhhhe--eccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 99999997422222 559999999999999999999999999999998773
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=115.01 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=109.9
Q ss_pred cceEEEEEeecC-CccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe---cCCceeecCceeE
Q 000424 28 RMSVTVVGTVEG-GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ---LDNTIKLLGAGAF 103 (1525)
Q Consensus 28 d~sV~v~dtve~-gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~---H~~~V~~~g~~sV 103 (1525)
-.+++++-+.-+ +.....+. +|++-|.++ ++-++-+|++|+.|.+||.||++-..++.++. |.....-+...+|
T Consensus 160 agdc~iy~tdc~~g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCcceEEEeecCCCCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 444444443222 33333444 499999875 23347899999999999999999999999887 5443221112399
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 104 AFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 104 aFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
+..|.|+.|++|-.|.+..+||++. ..+++.+..|+..|+|+.|+|...|++|||.|..|++=|+.-
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg--~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRG--GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeC--CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 9999999999999999999999993 566666778999999999999999999999999999999863
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=127.44 Aligned_cols=149 Identities=17% Similarity=0.253 Sum_probs=115.7
Q ss_pred CCCEEEEEEeccceEEEEEe-ecCC-ccce-EEccCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCcEEEEE
Q 000424 17 LQPVVFFGFHRRMSVTVVGT-VEGG-RAPT-KIKTDLKKPIVNLACHPR----LPVLYVAYADGLIRAYNIHTYAVHYTL 89 (1525)
Q Consensus 17 ~~p~Vf~s~~~d~sV~v~dt-ve~g-k~~t-~ik~~H~~~V~sIaf~P~----g~~LaSGs~DgtIrIWDi~t~k~l~tL 89 (1525)
.+|.+|.+.. ...++++.- .+++ +... ....+|.+.-..++|.-+ .+++|.|+.-|.|||.|+.++++...+
T Consensus 53 ~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~ 131 (385)
T KOG1034|consen 53 DEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY 131 (385)
T ss_pred CCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce
Confidence 4677766654 334444432 2221 1111 112247888888888643 568999999999999999999999999
Q ss_pred e-cCCceeecCceeEEEeCC-CCEEEEEeCCCcEEEEeCCCCCce-eeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 90 Q-LDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIERPS-MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 90 ~-H~~~V~~~g~~sVaFsPd-g~~LaSgS~DgtIrVWDv~t~~~s-~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
. |...|+ .+.|+|+ .++++++|.|.+||+||+++...- +.+-..+|.+.|.++.|+++|.+|+||+.|.+++
T Consensus 132 ~ghG~sIN-----eik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 132 RGHGGSIN-----EIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLK 206 (385)
T ss_pred eccCccch-----hhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence 9 999999 9999996 478999999999999999964221 1244578999999999999999999999999999
Q ss_pred EEEee
Q 000424 167 VWKTR 171 (1525)
Q Consensus 167 IWDlr 171 (1525)
+|+++
T Consensus 207 ~W~l~ 211 (385)
T KOG1034|consen 207 LWRLN 211 (385)
T ss_pred EEecC
Confidence 99987
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-10 Score=129.39 Aligned_cols=202 Identities=12% Similarity=0.090 Sum_probs=151.0
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
.-.++|.+++..++.+. .+..+.+|+ ++..+....+.+ |++.|+++.|.-....+++|+.|.+||+||++...|.++
T Consensus 222 it~~d~d~~~~~~iAas-~d~~~r~Wn-vd~~r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAAS-NDKNLRLWN-VDSLRLRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred cceeeecCCCceEEeec-CCCceeeee-ccchhhhhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 44677888888776665 588999998 455555556666 999999999987766699999999999999999988888
Q ss_pred EecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEE
Q 000424 89 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 89 L~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIW 168 (1525)
+-....++ .|.-+ ...++||-.|++||.||.++.. .......|. .|+++..++++..+.+++.|.++++.
T Consensus 299 ~l~~S~cn-----DI~~~--~~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 299 VLPGSQCN-----DIVCS--ISDVISGHFDKKVRFWDIRSAD--KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred cccccccc-----ceEec--ceeeeecccccceEEEeccCCc--eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeee
Confidence 77555555 55544 4567778899999999999642 222233544 89999999999999999999999999
Q ss_pred EeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccccccc
Q 000424 169 KTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTRE 248 (1525)
Q Consensus 169 Dlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~e 248 (1525)
|+|+.-- . ..++..+ ..--..++.+.|+|...+++ .|+-|..+++|....
T Consensus 369 DlRt~eI------~---------------~~~sA~g---~k~asDwtrvvfSpd~~Yva------AGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 369 DLRTKEI------R---------------QTFSAEG---FKCASDWTRVVFSPDGSYVA------AGSADGSVYIWSVFT 418 (459)
T ss_pred ecccccE------E---------------EEeeccc---cccccccceeEECCCCceee------eccCCCcEEEEEccC
Confidence 9984210 0 0000000 00012367789999999988 899999999999988
Q ss_pred Cceee
Q 000424 249 GRKQL 253 (1525)
Q Consensus 249 g~~q~ 253 (1525)
|+...
T Consensus 419 gKlE~ 423 (459)
T KOG0288|consen 419 GKLEK 423 (459)
T ss_pred ceEEE
Confidence 86554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=126.75 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=125.8
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecC-------CccceEEccCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEEcC
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEG-------GRAPTKIKTDLKKPIVNLACHPRL--PVLYVAYADGLIRAYNIH 81 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~-------gk~~t~ik~~H~~~V~sIaf~P~g--~~LaSGs~DgtIrIWDi~ 81 (1525)
-|.|+-++..++.+ ++|..|.+|...+- ...+.....+|+-+|+.+.+.+.+ .+++|+|.|.++|+||+.
T Consensus 128 cL~fs~dgs~iiTg-skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 128 CLKFSDDGSHIITG-SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred EEEEeCCCcEEEec-CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 35667666666554 47889988876432 334555556799999999888764 589999999999999999
Q ss_pred CCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC--------------ceeeEeecccCc--CeE
Q 000424 82 TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER--------------PSMIGIIQVGSQ--PIT 145 (1525)
Q Consensus 82 t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~--------------~s~i~il~gH~~--~Vt 145 (1525)
.+.++.++.-...+. +++..|-+..++.|+.+|.|.+.++.... ..-+..+.||++ .|+
T Consensus 207 ~g~LLlti~fp~si~-----av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 207 LGVLLLTITFPSSIK-----AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred cceeeEEEecCCcce-----eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 999999988778889 99999999999999999999988876421 111234668988 999
Q ss_pred EEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 146 SVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 146 sIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
|++.+-||.+|++|+.||.|.|||+.
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecc
Confidence 99999999999999999999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=126.25 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=125.9
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCc-----cceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCc
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGR-----APTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk-----~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k 84 (1525)
-++|.|-...+..+.+.|-+|.+|..-+.+. .+.+...+|...|--++|||.-. .|++++.|.+|.|||+.+++
T Consensus 86 Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge 165 (472)
T KOG0303|consen 86 DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE 165 (472)
T ss_pred ccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc
Confidence 3688999999999999999999998766532 33344445999999999999865 78999999999999999999
Q ss_pred EEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCc-CeEEEEEcCCCCEEEEE---E
Q 000424 85 VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQ-PITSVAWLPMLRLLVTL---C 160 (1525)
Q Consensus 85 ~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~-~VtsIafsPdg~lLaSg---S 160 (1525)
.+.++.|.+-|. ++.|+.||..+++++.|..|||||.++ ..++..-.+|.+ .-..+.|--+|.++.|| .
T Consensus 166 ali~l~hpd~i~-----S~sfn~dGs~l~TtckDKkvRv~dpr~--~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~ 238 (472)
T KOG0303|consen 166 ALITLDHPDMVY-----SMSFNRDGSLLCTTCKDKKVRVIDPRR--GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRM 238 (472)
T ss_pred eeeecCCCCeEE-----EEEeccCCceeeeecccceeEEEcCCC--CcEeeecccccCCCcceeEEeccCceeeeccccc
Confidence 999999999999 999999999999999999999999995 344433345643 23457788888866565 2
Q ss_pred CCCCeeEEEeee
Q 000424 161 RDGSLQVWKTRV 172 (1525)
Q Consensus 161 ~DgtIkIWDlr~ 172 (1525)
.+..+-+||...
T Consensus 239 seRq~aLwdp~n 250 (472)
T KOG0303|consen 239 SERQIALWDPNN 250 (472)
T ss_pred cccceeccCccc
Confidence 467899999763
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=121.20 Aligned_cols=161 Identities=15% Similarity=0.172 Sum_probs=121.6
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~ 90 (1525)
-+.|++-+.++.+|+. ++.+.+|+... .+.. .+.+.|..+|.+++|+++|+.|+++|.|-.|++||+..+.+++.+.
T Consensus 28 ~~~Fs~~G~~lAvGc~-nG~vvI~D~~T-~~ia-r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCA-NGRVVIYDFDT-FRIA-RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred eEEeccCcceeeeecc-CCcEEEEEccc-cchh-hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 4679999999988885 78888888533 2333 3344599999999999999999999999999999999887776654
Q ss_pred cCCceee------------------------------------------cCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 91 LDNTIKL------------------------------------------LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 91 H~~~V~~------------------------------------------~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
-..+|.. +.+.+..|++.|++|++|..-|.+.|+|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 2222110 0012334778889999999999999999985
Q ss_pred CCceeeEeecccC-cCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCC
Q 000424 129 ERPSMIGIIQVGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINP 176 (1525)
Q Consensus 129 ~~~s~i~il~gH~-~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p 176 (1525)
..++..+.-.+ ..|.++.|+-.|+.|+.-+.|..||.++++-....
T Consensus 185 --~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 185 --LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred --heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 34443222223 67888999999999999999999999999844433
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=126.12 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=124.3
Q ss_pred EEEEEcCC--CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 10 VHLALTPL--QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 10 ~hLA~hP~--~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
+.--+||. --.|+.|+ ....+.+|+ +..++....+.. |...|+++.=+|--..+|.|..+|+|.|++++..+.+.
T Consensus 162 Ital~HP~TYLNKIvvGs-~~G~lql~N-vrt~K~v~~f~~-~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGS-SQGRLQLWN-VRTGKVVYTFQE-FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred eeeEecchhheeeEEEee-cCCcEEEEE-eccCcEEEEecc-cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 44456774 34455665 367778888 556666666665 88999999999999999999999999999999999999
Q ss_pred EEecC-CceeecCceeEEEeCCCCEEE-EEeCCCcEEEEeCCCCCceee-EeecccCcCeEEEEEcCCCCEEEEEECCCC
Q 000424 88 TLQLD-NTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIERPSMI-GIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 88 tL~H~-~~V~~~g~~sVaFsPdg~~La-SgS~DgtIrVWDv~t~~~s~i-~il~gH~~~VtsIafsPdg~lLaSgS~Dgt 164 (1525)
+|+|. +.|+ +++|.-||+.++ +|+..|.+-+||++. +..+ .+.+.|...|....|.|..+.++|++.|.+
T Consensus 239 sFk~d~g~Vt-----slSFrtDG~p~las~~~~G~m~~wDLe~--kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 239 SFKQDWGRVT-----SLSFRTDGNPLLASGRSNGDMAFWDLEK--KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred EEEcccccee-----EEEeccCCCeeEEeccCCceEEEEEcCC--CeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence 99975 9999 999999997655 455779999999994 3333 346699999999999999999999999999
Q ss_pred eeEEEee
Q 000424 165 LQVWKTR 171 (1525)
Q Consensus 165 IkIWDlr 171 (1525)
+++|=..
T Consensus 312 lk~~vfD 318 (910)
T KOG1539|consen 312 LKVWVFD 318 (910)
T ss_pred eeEEEee
Confidence 9999554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.7e-08 Score=116.90 Aligned_cols=195 Identities=14% Similarity=0.187 Sum_probs=125.0
Q ss_pred EcC-CCCEEEEEEeccceEEEEEeec-CCccceEEccCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEEcCCCc----
Q 000424 14 LTP-LQPVVFFGFHRRMSVTVVGTVE-GGRAPTKIKTDLKKPIVNLACHPRLP---VLYVAYADGLIRAYNIHTYA---- 84 (1525)
Q Consensus 14 ~hP-~~p~Vf~s~~~d~sV~v~dtve-~gk~~t~ik~~H~~~V~sIaf~P~g~---~LaSGs~DgtIrIWDi~t~k---- 84 (1525)
+.| .+.+++.....+..+.+..... .-...-.+. +|.+.|++|+|...+. +|||+|.|.+||||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~-GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~ 231 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELE-GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS 231 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEee-ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc
Confidence 344 3444444444444444444321 112233344 4999999999986544 78999999999999853211
Q ss_pred -----------------EE---E------E-Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCc-----
Q 000424 85 -----------------VH---Y------T-LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP----- 131 (1525)
Q Consensus 85 -----------------~l---~------t-L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~----- 131 (1525)
.. . + +. |++.|. ++.|+|++..|+|+|.|.++.+|.-.+...
T Consensus 232 ~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~-----sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~ 306 (764)
T KOG1063|consen 232 NEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY-----SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV 306 (764)
T ss_pred cccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE-----EEEEccchhhheecccCcceEEEecCCccceEEEE
Confidence 11 1 1 12 889999 999999999999999999999996553211
Q ss_pred eeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecC
Q 000424 132 SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPL 211 (1525)
Q Consensus 132 s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l 211 (1525)
-..+...+....-.+..|+|++..+++-+.-|..++|... ++ .++. .....+++ +
T Consensus 307 vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~---d~-------~~w~--------~~~~iSGH-------~ 361 (764)
T KOG1063|consen 307 VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK---DK-------TFWT--------QEPVISGH-------V 361 (764)
T ss_pred EEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc---Cc-------ccee--------eccccccc-------c
Confidence 1123333334457889999999999999999999999722 10 0000 01122222 2
Q ss_pred CCeeEEEEecCCCeEEEEecccccCCcccccccc
Q 000424 212 PRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAY 245 (1525)
Q Consensus 212 ~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~ 245 (1525)
..|+++.|||++-++- +.+-|.+.|+..
T Consensus 362 ~~V~dv~W~psGeflL------svs~DQTTRlFa 389 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLL------SVSLDQTTRLFA 389 (764)
T ss_pred ccceeeeecCCCCEEE------Eeccccceeeec
Confidence 4689999999998765 555555555443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=132.21 Aligned_cols=280 Identities=16% Similarity=0.227 Sum_probs=176.4
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCc--cceEEccCCCCCeEEEEEcC------C-----CCEEEEEECCCcEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHP------R-----LPVLYVAYADGLIR 76 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk--~~t~ik~~H~~~V~sIaf~P------~-----g~~LaSGs~DgtIr 76 (1525)
+.+.|.|+..++-+-- ++.++.+||..+-.+ ....+.. |..-|.++..-| . ...|.+++.|++||
T Consensus 328 IA~~Fdet~~klscVY-ndhSlYvWDvrD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVY-NDHSLYVWDVRDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eEEEecCCCceEEEEE-cCceEEEEeccccccccceeeeee-ccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 5788999999986554 689999999755432 2233334 777777665433 1 22589999999999
Q ss_pred EEEcCCCcEEEEE--------------------------------------ecCCceeecCceeEEEeCCCCEEEEEeCC
Q 000424 77 AYNIHTYAVHYTL--------------------------------------QLDNTIKLLGAGAFAFHPTLEWLFVGDRR 118 (1525)
Q Consensus 77 IWDi~t~k~l~tL--------------------------------------~H~~~V~~~g~~sVaFsPdg~~LaSgS~D 118 (1525)
+||+..+....++ .....++ +++.+|+|++|++|..-
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R-----~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFR-----ALAVSPDGQHLASGDRG 480 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceE-----EEEECCCcceecccCcc
Confidence 9998652110000 0123345 99999999999999999
Q ss_pred CcEEEEeCCCCCceeeEeecccCcCeEEEEEcC---CCCEEEEEECCCCeeEEEeeee------cCCCCCCCccccccCC
Q 000424 119 GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP---MLRLLVTLCRDGSLQVWKTRVI------INPNRPPMQANFFEPA 189 (1525)
Q Consensus 119 gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP---dg~lLaSgS~DgtIkIWDlr~~------~~p~~~~~~a~~f~p~ 189 (1525)
|+++|+|+... ....++++|...|.|+.|+- ..++|+++|.|.-|+|+|+... +..+...+.+.-|..+
T Consensus 481 GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~ 558 (1080)
T KOG1408|consen 481 GNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN 558 (1080)
T ss_pred CceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeec
Confidence 99999999952 22234679999999999984 3578999999999999999721 2222222211111221
Q ss_pred Cccc------cc---ccccccccCCccee-------cCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceee
Q 000424 190 SIES------ID---IPRILSQQGGEAVY-------PLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQL 253 (1525)
Q Consensus 190 ~Ies------ld---i~~iLs~~gG~~vy-------~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~ 253 (1525)
+.+. -| .-++....+....+ ..-.+-+++..|+.-+++ ++..|+++++.....|+ .
T Consensus 559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~------t~cQDrnirif~i~sgK--q 630 (1080)
T KOG1408|consen 559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV------TVCQDRNIRIFDIESGK--Q 630 (1080)
T ss_pred CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE------EEecccceEEEeccccc--e
Confidence 1000 00 00000000000111 111345678888888877 78889999988877774 2
Q ss_pred eeeeccccCCcccchhhhcccCCCcccc--hhhHHHHHHHhhhccCCCceeeehhhhhceeeeeeccccccc
Q 000424 254 FAVLQSARGSSASVLKEKLSSMGSSGIL--ADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKS 323 (1525)
Q Consensus 254 ~~tlq~~~~~~~s~~~e~~~slgs~g~l--~~~ql~~~~~~~~~~~~~~~~I~di~r~~~i~s~~~d~~~k~ 323 (1525)
..++++-++.-.++++ ..++++|+. -.+ .|+++.+.|+...+++-+ |-||...
T Consensus 631 ~k~FKgs~~~eG~lIK---v~lDPSgiY~atSc------------sdktl~~~Df~sgEcvA~--m~GHsE~ 685 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIK---VILDPSGIYLATSC------------SDKTLCFVDFVSGECVAQ--MTGHSEA 685 (1080)
T ss_pred eeeecccccCCCceEE---EEECCCccEEEEee------------cCCceEEEEeccchhhhh--hcCcchh
Confidence 3345555444333333 245667765 223 699999999988888866 6566653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-09 Score=123.20 Aligned_cols=116 Identities=21% Similarity=0.353 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC-------c--EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCC
Q 000424 51 KKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTY-------A--VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRG 119 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~-------k--~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg 119 (1525)
..+|.++.|++.+. .++||+.|..||||-+... + -+..|. |...|+ +|.|+|+|..++||+++|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN-----~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN-----VVRFSPDGELLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeE-----EEEEcCCcCeeeecCCCc
Confidence 47899999999876 8999999999999986432 1 234455 999999 999999999999999999
Q ss_pred cEEEEeCC--------C------CCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 120 TLLAWDVS--------I------ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 120 tIrVWDv~--------t------~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.|.+|-.. + +.......+.+|...|..++|+|++.+++++|.|.++++||++
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 99999554 1 0122224567899999999999999999999999999999998
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=120.95 Aligned_cols=190 Identities=13% Similarity=0.227 Sum_probs=137.7
Q ss_pred EEcCCCCEEEEEEeccceEEEEEeecC--CccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEE
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEG--GRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTL 89 (1525)
Q Consensus 13 A~hP~~p~Vf~s~~~d~sV~v~dtve~--gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL 89 (1525)
.|.-..|.+..+++=|-++++|+...+ +...|.+.. |.+.|..|+|...+. +||+.+.||.||++|++..+.-..+
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA-HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA-HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe-cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 355567777777777899999995443 224566666 999999999998664 7999999999999999876543332
Q ss_pred e----cCCceeecCceeEEEeC-CCCEEEEEe-CCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC-CCEEEEEECC
Q 000424 90 Q----LDNTIKLLGAGAFAFHP-TLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRD 162 (1525)
Q Consensus 90 ~----H~~~V~~~g~~sVaFsP-dg~~LaSgS-~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd-g~lLaSgS~D 162 (1525)
- ...+.. .++|++ |-+++++-. +...|.|-|++.. ...+..+++|...|+.|+|+|+ ...|+||++|
T Consensus 236 YE~p~~~~pLl-----RLswnkqDpnymATf~~dS~~V~iLDiR~P-~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 236 YEDPSPSTPLL-----RLSWNKQDPNYMATFAMDSNKVVILDIRVP-CTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred ecCCCCCCcce-----eeccCcCCchHHhhhhcCCceEEEEEecCC-CcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 2 234556 788888 567777765 6678999999953 4445568899999999999996 5689999999
Q ss_pred CCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecC-CCeEEEEecc
Q 000424 163 GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPR-LNLAVLLFAN 232 (1525)
Q Consensus 163 gtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~-~Nlial~F~~ 232 (1525)
..+-+||+.....++. .+.+|.+..| ..|+.+.|.|. .+.++++|..
T Consensus 310 ~qaliWDl~q~~~~~~-----------------~dPilay~a~------~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 310 CQALIWDLQQMPRENG-----------------EDPILAYTAG------GEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ceEEEEecccccccCC-----------------CCchhhhhcc------ceeeeeeecccCCCEEEEEecC
Confidence 9999999985543110 1112332221 14677888865 5788888865
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-10 Score=139.40 Aligned_cols=120 Identities=21% Similarity=0.331 Sum_probs=105.6
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCC
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADG-----LIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR 118 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~Dg-----tIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~D 118 (1525)
++.+ |.-.|++++.+|+++++||+|... .|++|+..+...++.+. |.-.|+ .++|||||++|++.|+|
T Consensus 520 KLYG-HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT-----~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 520 KLYG-HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT-----RLAFSPDGRYLLSVSRD 593 (764)
T ss_pred Hhcc-CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE-----EEEECCCCcEEEEeecC
Confidence 5555 999999999999999999999754 59999999999889999 999999 99999999999999999
Q ss_pred CcEEEEeCCCC---CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 119 GTLLAWDVSIE---RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 119 gtIrVWDv~t~---~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+++.+|..... ...+ ...+.|+.-|.+++|+|++.+|+|+|.|++|++|...
T Consensus 594 Rt~sl~~~~~~~~~e~~f-a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRF-ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ceEEeeeeecccchhhhh-ccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 99999987642 1121 2356899999999999999999999999999999864
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=122.94 Aligned_cols=153 Identities=11% Similarity=0.167 Sum_probs=121.5
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEc----cCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCCC
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK----TDLKKPIVNLACHP--RLPVLYVAYADGLIRAYNIHTY 83 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik----~~H~~~V~sIaf~P--~g~~LaSGs~DgtIrIWDi~t~ 83 (1525)
--+-|+|++..+..- .+..+.+|+.-+..+..-.+. .+|....++-+|+| ++..+++. .|++++.||+++.
T Consensus 127 ~cvew~Pns~klasm--~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred eeEEEcCCCCeeEEe--ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 346799988875433 488898998766544222221 24677788889988 56777775 5899999999999
Q ss_pred cEEEEEe--cCCceeecCceeEEEeCCCC-EEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC-CCEEEEE
Q 000424 84 AVHYTLQ--LDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTL 159 (1525)
Q Consensus 84 k~l~tL~--H~~~V~~~g~~sVaFsPdg~-~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd-g~lLaSg 159 (1525)
++...++ |...|+ .++|+|..+ +|++|++||.|++||.+.. +..+..+.+|.+.|.++.|+|. ..+++||
T Consensus 204 ~~~~sI~dAHgq~vr-----dlDfNpnkq~~lvt~gDdgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVR-----DLDFNPNKQHILVTCGDDGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred hhhcchhhhhcceee-----eccCCCCceEEEEEcCCCccEEEEeccCC-CccccccCCCceEEEEEEecCccceEEEec
Confidence 9999998 999999 999999875 5778889999999999953 3444567899999999999995 5688999
Q ss_pred ECCCCeeEEEee
Q 000424 160 CRDGSLQVWKTR 171 (1525)
Q Consensus 160 S~DgtIkIWDlr 171 (1525)
|.|..|.+|...
T Consensus 278 ~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 278 GSDSAVNLSCAS 289 (370)
T ss_pred CCCceeEEEecc
Confidence 999999999865
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=113.82 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=135.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
+|+.+++.|.++.+|.+|++++.|.++.+|-..+++.+.++. |.+.|. |++...+.+++++|+.|.++++||+.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-----~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-----CCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-----EEEecCCcceeeeccccceeEEEEcC
Confidence 499999999999999999999999999999998999999999 999999 99999999999999999999999999
Q ss_pred CCCceeeEeecccCcCeEEEEEcCCCCEEEEEECC-----CCeeEEEeeeecCCCCCCCccccccCCCcccccccccccc
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD-----GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ 202 (1525)
Q Consensus 128 t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~D-----gtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~ 202 (1525)
+. +.+..+.. ..+|..+.|+++|.+++.++++ +.|.++|++..-. ....- +| +-.+.
T Consensus 83 tG--k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~-----~~~s~-ep-------~~kI~-- 144 (327)
T KOG0643|consen 83 TG--KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS-----DIDSE-EP-------YLKIP-- 144 (327)
T ss_pred CC--cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh-----hhccc-Cc-------eEEec--
Confidence 64 33333433 6789999999999988877654 3788888872110 00000 00 00010
Q ss_pred cCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccC
Q 000424 203 QGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARG 262 (1525)
Q Consensus 203 ~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~ 262 (1525)
.+-+.++...|.|..-.+. ++.++.++..|..+.| .+++++-+.|..
T Consensus 145 ------t~~skit~a~Wg~l~~~ii------~Ghe~G~is~~da~~g-~~~v~s~~~h~~ 191 (327)
T KOG0643|consen 145 ------TPDSKITSALWGPLGETII------AGHEDGSISIYDARTG-KELVDSDEEHSS 191 (327)
T ss_pred ------CCccceeeeeecccCCEEE------EecCCCcEEEEEcccC-ceeeechhhhcc
Confidence 1113577788888887776 7888889888888877 244555555554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=113.66 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=133.3
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCC-cEEEEEcCCCcEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG-LIRAYNIHTYAVHY 87 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~Dg-tIrIWDi~t~k~l~ 87 (1525)
-.+++++|++..++++...+..+.+|+.. .......+. +...+.+++|+|++.++++++.++ .+.+||..+++...
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIE-TRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECC-CCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 35789999999888887667888888853 333333332 334578899999999999888775 56778998887776
Q ss_pred EEecCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeEeeccc-----C--cCeEEEEEcCCCCEEEE-
Q 000424 88 TLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVG-----S--QPITSVAWLPMLRLLVT- 158 (1525)
Q Consensus 88 tL~H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~il~gH-----~--~~VtsIafsPdg~lLaS- 158 (1525)
.+....... +++|+|++++++.++ .++.|++||+.+. .....+..+ . ....+++|+|++++++.
T Consensus 152 ~~~~~~~~~-----~~~~s~dg~~l~~~~~~~~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 152 NVLVDQRPR-----FAEFTADGKELWVSSEIGGTVSVIDVATR--KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EEEcCCCcc-----EEEECCCCCEEEEEcCCCCEEEEEEcCcc--eeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 665334456 899999999886554 6999999999863 222111111 1 12346899999998544
Q ss_pred EECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCc
Q 000424 159 LCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDN 238 (1525)
Q Consensus 159 gS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd 238 (1525)
.+.+++|.+||.+.... . ..+. .+ ..+..+.|+|++..+.+ +.+.+
T Consensus 225 ~~~~~~i~v~d~~~~~~------~---------------~~~~-~~-------~~~~~~~~~~~g~~l~~-----~~~~~ 270 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEV------L---------------DYLL-VG-------QRVWQLAFTPDEKYLLT-----TNGVS 270 (300)
T ss_pred cCCCCeEEEEECCCCcE------E---------------EEEE-eC-------CCcceEEECCCCCEEEE-----EcCCC
Confidence 45577899999752110 0 0000 01 13567899999887651 23456
Q ss_pred ccccccccccCc
Q 000424 239 IKNRAAYTREGR 250 (1525)
Q Consensus 239 ~~~k~~~~~eg~ 250 (1525)
..+++|..+.++
T Consensus 271 ~~i~v~d~~~~~ 282 (300)
T TIGR03866 271 NDVSVIDVAALK 282 (300)
T ss_pred CeEEEEECCCCc
Confidence 678888877764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-09 Score=123.02 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=120.8
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCc-cceEEccCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR-APTKIKTDLK-KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk-~~t~ik~~H~-~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
.-.+|+|++..+.+++.++.-...|+.-..-. +...+.+ |+ ..+....++|++++++..+..|.|.+....+++.+.
T Consensus 261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred ceeeecCCCceEEEecccceEEEEeeccccccccccCCCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh
Confidence 34689999885555555677777787533211 1222222 43 467889999999999999999999999999999999
Q ss_pred EEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeec-ccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 88 TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ-VGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 88 tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~-gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
+++..+.|. .++|+.|++.|++++.+|.|.+||+++ ..++..+. ...-.-++++.++++.|||+||+.|-|.
T Consensus 340 s~KieG~v~-----~~~fsSdsk~l~~~~~~GeV~v~nl~~--~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 340 SFKIEGVVS-----DFTFSSDSKELLASGGTGEVYVWNLRQ--NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred eeeeccEEe-----eEEEecCCcEEEEEcCCceEEEEecCC--cceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence 999888899 999999999999999999999999995 34442221 1122235788889999999999999999
Q ss_pred EEEeeeec
Q 000424 167 VWKTRVII 174 (1525)
Q Consensus 167 IWDlr~~~ 174 (1525)
|||.+..+
T Consensus 413 IYd~~s~~ 420 (514)
T KOG2055|consen 413 IYDGNSCF 420 (514)
T ss_pred Eeccchhh
Confidence 99987444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=120.75 Aligned_cols=187 Identities=14% Similarity=0.203 Sum_probs=137.8
Q ss_pred cCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCc---cceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR---APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 81 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk---~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~ 81 (1525)
|.+.-+..+|||+.|.+.+++. +..+.+|. .+++. ..-.+...-++.|.|++|.++|. +++|..+|.|.||+..
T Consensus 199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~-~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWT-LRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeC-CceEEEEE-ccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 4455577899999999988874 77888885 44432 22222232347799999999887 5789999999999999
Q ss_pred CCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC--CC-----------Cce--------ee-----
Q 000424 82 TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS--IE-----------RPS--------MI----- 134 (1525)
Q Consensus 82 t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~--t~-----------~~s--------~i----- 134 (1525)
+.+..+... |.+.|. +++.-.+|. |+||+.|+.|..||-. +. .+. ++
T Consensus 276 ~~~~~k~~~aH~ggv~-----~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN 349 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVF-----SLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN 349 (626)
T ss_pred CceEEeEeeecCCceE-----EEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence 888888888 999999 999999986 4569999999999832 10 000 00
Q ss_pred ------------EeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccc
Q 000424 135 ------------GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ 202 (1525)
Q Consensus 135 ------------~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~ 202 (1525)
.+..+|......++-||+.+.++||+.|+.+++|+-. +. ..+.+..
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~------k~---------------~wt~~~~- 407 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH------KL---------------EWTKIIE- 407 (626)
T ss_pred eEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC------ce---------------eEEEEec-
Confidence 1235788888999999999999999999999999821 10 0011111
Q ss_pred cCCcceecCCCeeEEEEecCCCeEEEEecc
Q 000424 203 QGGEAVYPLPRVRALEVHPRLNLAVLLFAN 232 (1525)
Q Consensus 203 ~gG~~vy~l~~V~~v~~HP~~Nlial~F~~ 232 (1525)
....++.|||.+ .+|+.++.
T Consensus 408 ---------d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 408 ---------DPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred ---------CceeEeeccCcc-eEEEeecc
Confidence 245789999998 88888765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=123.10 Aligned_cols=114 Identities=16% Similarity=0.290 Sum_probs=101.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 129 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~ 129 (1525)
-++.|+++.|+|.+..|++++.||++++||.........++|..++. +++|.++ ..+++|+.||.|+.+|+++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL-----~c~F~d~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL-----DCAFADE-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCcee-----eeeccCC-ceEEEeccCceEEEEEecCC
Confidence 35789999999999999999999999999999888888888999999 9999884 57899999999999999975
Q ss_pred CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 130 RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 130 ~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
....+ ..|...|+||.+++....++|||.|++|++||.|.
T Consensus 86 ~~~~i---gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 86 NEDQI---GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred cceee---ccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 44443 37999999999999989999999999999999984
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-10 Score=126.51 Aligned_cols=144 Identities=15% Similarity=0.291 Sum_probs=115.8
Q ss_pred CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEEe----cC
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ----LD 92 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL~----H~ 92 (1525)
.|++.++. .+.-|++++.+ .+.....+.+ |.+.|+.|.+||+.+ ++++||.|.+||+||+++..|+..|- |.
T Consensus 105 ~p~la~~G-~~GvIrVid~~-~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 105 NPFLAAGG-YLGVIRVIDVV-SGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CeeEEeec-ceeEEEEEecc-hhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 56666665 57777788753 4444444555 999999999999875 78999999999999999999998886 99
Q ss_pred CceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC--------------Cce---e-------e--EeecccCcCeEE
Q 000424 93 NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE--------------RPS---M-------I--GIIQVGSQPITS 146 (1525)
Q Consensus 93 ~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~--------------~~s---~-------i--~il~gH~~~Vts 146 (1525)
+.|. +++|+++|.+|+|++.|.++++|++... .++ + . .+..-|..+|-|
T Consensus 182 deVL-----SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 182 DEVL-----SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred CcEE-----EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 9999 9999999999999999999999999831 000 0 0 134568888888
Q ss_pred EEEcCCCCEEEEEECCCCeeEEEee
Q 000424 147 VAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 147 IafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+.|- |.+++|=|-++.|..|...
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred HHHH--hhheeecccCceEEEEecc
Confidence 8885 4689999999999999863
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=129.82 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=136.8
Q ss_pred EEEcCCCCEEEEEEecc--ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEE
Q 000424 12 LALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL 89 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d--~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL 89 (1525)
+.||-.+.++.+..... .+| ++....+.+....+.. -++.|..+.|||..++|++++. ..|||||+....+++.+
T Consensus 527 vtWHrkGDYlatV~~~~~~~~V-liHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSV-LIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL 603 (733)
T ss_pred eeeecCCceEEEeccCCCcceE-EEEecccccccCchhh-cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH
Confidence 45666666554443322 222 2233333333222222 3577999999999999999876 57999999888777777
Q ss_pred e-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEE
Q 000424 90 Q-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 90 ~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIW 168 (1525)
. ....|. +++.||.|..|+.|+.|+.+..+|+.-. ......+.-|...|++|+||+..++|+|||.||++.|+
T Consensus 604 ~tg~kwiS-----~msihp~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 604 LTGSKWIS-----SMSIHPNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred hcCCeeee-----eeeecCCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 6 667788 9999999999999999999999998842 12223456899999999999999999999999999999
Q ss_pred EeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccc
Q 000424 169 KTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAA 244 (1525)
Q Consensus 169 Dlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~ 244 (1525)
.-++.-.-...++. -| + ..|. |..+..--+|-++.|||+..++. +++-|..++.|
T Consensus 678 hg~VY~Dl~qnpli----VP-------l-K~L~---gH~~~~~~gVLd~~wHP~qpWLf------sAGAd~tirlf 732 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLI----VP-------L-KRLR---GHEKTNDLGVLDTIWHPRQPWLF------SAGADGTIRLF 732 (733)
T ss_pred eeeeehhhhcCCce----Ee-------e-eecc---CceeecccceEeecccCCCceEE------ecCCCceEEee
Confidence 87754321111111 11 0 0111 11111112577788999999876 66666666544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-10 Score=138.65 Aligned_cols=112 Identities=12% Similarity=0.256 Sum_probs=103.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
+|...|+|+.|..+|.++++|++|..+|||...+..++.++. |...++ .++.+...-.++++|.|..|+||-+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~dit-----dlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDIT-----DLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccc-----hhccchhhhhhhhcccCceEEEEecC
Confidence 499999999999999999999999999999999999999999 999999 99998888899999999999999998
Q ss_pred CCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 128 t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
. ...+.++.+|++.|++|+|+|-. +.+.||++++||.|
T Consensus 263 ~--~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 D--GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred C--CchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 5 33444578999999999999976 77899999999999
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=115.54 Aligned_cols=233 Identities=16% Similarity=0.250 Sum_probs=149.4
Q ss_pred CCcEEEEEEc-CCCCEEEEEEeccceEEEEEeecCC-------c-cceEEccCCCCCeEEEEEcCC--CCEEEEEECCCc
Q 000424 6 VDTEVHLALT-PLQPVVFFGFHRRMSVTVVGTVEGG-------R-APTKIKTDLKKPIVNLACHPR--LPVLYVAYADGL 74 (1525)
Q Consensus 6 ~~~e~hLA~h-P~~p~Vf~s~~~d~sV~v~dtve~g-------k-~~t~ik~~H~~~V~sIaf~P~--g~~LaSGs~Dgt 74 (1525)
....+-+.|. |.=-.++.+.+-|.++.+|...+.. + ..+++. +-...|..|.|.|. |-.+|+++.||+
T Consensus 59 ~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~ 137 (361)
T KOG2445|consen 59 DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGI 137 (361)
T ss_pred CCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcE
Confidence 4455666664 5544455566679999999864331 1 122333 36788999999996 557999999999
Q ss_pred EEEEEcCCC------cEEEEEe--------cCCceeecCceeEEEeCC---CCEEEEEeCC-----CcEEEEeCCCC--C
Q 000424 75 IRAYNIHTY------AVHYTLQ--------LDNTIKLLGAGAFAFHPT---LEWLFVGDRR-----GTLLAWDVSIE--R 130 (1525)
Q Consensus 75 IrIWDi~t~------k~l~tL~--------H~~~V~~~g~~sVaFsPd---g~~LaSgS~D-----gtIrVWDv~t~--~ 130 (1525)
+|||+.-.- .+.+.++ +..+.. ||.|+|. .++|+.|+++ +.++||..... +
T Consensus 138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~-----CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF-----CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred EEEEecCCccccccchhhhhhhhccCCcccccCcce-----EEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 999985432 2223332 334455 9999874 4678888866 58899987753 2
Q ss_pred ceeeEeecccCcCeEEEEEcCCC----CEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCccccccccc--ccccC
Q 000424 131 PSMIGIIQVGSQPITSVAWLPML----RLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRI--LSQQG 204 (1525)
Q Consensus 131 ~s~i~il~gH~~~VtsIafsPdg----~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~i--Ls~~g 204 (1525)
...+..+.+|..+|+.|+|.|+- .+|++++.|| |+||.++....+-. ......+.....+++..+ +..+.
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~---~ee~~~~~~~~~l~v~~vs~~~~H~ 288 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE---EEEVLAPDLMTDLPVEKVSELDDHN 288 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh---hhcccCCCCccccceEEeeeccCCC
Confidence 23334566999999999999962 4799999999 99999985442110 000011111112222222 11221
Q ss_pred CcceecCCCeeEEEEecCCCeEEEEecccccCCccccccccccc-Cceeeeeeecccc
Q 000424 205 GEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTRE-GRKQLFAVLQSAR 261 (1525)
Q Consensus 205 G~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~e-g~~q~~~tlq~~~ 261 (1525)
| .||.+.|.-++.+++ +.|||..+|.|+..- ..+.+..++..+.
T Consensus 289 ~-------~VWrv~wNmtGtiLs------StGdDG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 289 G-------EVWRVRWNMTGTILS------STGDDGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred C-------ceEEEEEeeeeeEEe------ecCCCceeeehhhhhhhhheeeeEEeccC
Confidence 1 478899988887777 899999999998643 3344554554433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.4e-10 Score=140.69 Aligned_cols=202 Identities=18% Similarity=0.268 Sum_probs=138.0
Q ss_pred EEEEEEcCCCCE---EEEEEeccceEEEEEeec--CCc--cceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEc
Q 000424 9 EVHLALTPLQPV---VFFGFHRRMSVTVVGTVE--GGR--APTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNI 80 (1525)
Q Consensus 9 e~hLA~hP~~p~---Vf~s~~~d~sV~v~dtve--~gk--~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi 80 (1525)
=.-|+|.+.+.- |..|...+++|.+|+... .+. ....-+..|++.|++++|++.+. +||+|+.||.|.|||+
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 345888887766 567777899999998754 122 22222346999999999999876 8999999999999999
Q ss_pred CCCcEEEEEe---cCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEeCCCCCceeeEeecccC--cCeEEEEEcCCCC
Q 000424 81 HTYAVHYTLQ---LDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS--QPITSVAWLPMLR 154 (1525)
Q Consensus 81 ~t~k~l~tL~---H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~--~~VtsIafsPdg~ 154 (1525)
...+.-+++. ..+.|. +++|+..- ..|++++.+|.+.|||++.. +.++. +..|. ..+..++|||+..
T Consensus 147 nn~~tP~~~~~~~~~~eI~-----~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~-ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 147 NKPETPFTPGSQAPPSEIK-----CLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIK-LSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred CCcCCCCCCCCCCCcccce-----EeccchhhhHHhhccCCCCCceeccccCC-Ccccc-cccCCCccceeeeeeCCCCc
Confidence 8765544442 457788 99999854 55677889999999999953 23331 22333 3467899999864
Q ss_pred -EEEEEECCC---CeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEe
Q 000424 155 -LLVTLCRDG---SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLF 230 (1525)
Q Consensus 155 -lLaSgS~Dg---tIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F 230 (1525)
.++++|+|. .|++||+|....|-+ ++..+. .+|..+.|.+..+-..+
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k--------------------~~~~H~-------~GilslsWc~~D~~lll-- 270 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLK--------------------ILEGHQ-------RGILSLSWCPQDPRLLL-- 270 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchh--------------------hhcccc-------cceeeeccCCCCchhhh--
Confidence 566666655 799999984332111 111111 24677888877643221
Q ss_pred cccccCCcccccccccccC
Q 000424 231 ANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 231 ~~~s~~Dd~~~k~~~~~eg 249 (1525)
+++-|..+..|....|
T Consensus 271 ---SsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 271 ---SSGKDNRIICWNPNTG 286 (1049)
T ss_pred ---cccCCCCeeEecCCCc
Confidence 6677777777766554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=123.65 Aligned_cols=156 Identities=13% Similarity=0.202 Sum_probs=124.8
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecC--Cc---c--ceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEG--GR---A--PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 81 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~--gk---~--~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~ 81 (1525)
-+.+.||+..-..+++...+..|.+|..... +. . .......|...|+.+.|+|+|.+||||+++|.|.+|-..
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 4567788776645666667889999875322 11 1 112223599999999999999999999999999999755
Q ss_pred --------C--------CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCe
Q 000424 82 --------T--------YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 144 (1525)
Q Consensus 82 --------t--------~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~V 144 (1525)
+ +.+.+.+. |.+.+. .++|+||+.++++++.|+++++||+.. .....++..|.++|
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy-----dL~Ws~d~~~l~s~s~dns~~l~Dv~~--G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIY-----DLAWSPDSNFLVSGSVDNSVRLWDVHA--GQLLAILDDHEHYV 168 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchh-----hhhccCCCceeeeeeccceEEEEEecc--ceeEeecccccccc
Confidence 2 34455666 888888 999999999999999999999999994 55666788999999
Q ss_pred EEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 145 TSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 145 tsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
..++|.|..+++++-|.|...+...++
T Consensus 169 qgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ceeecchhhhhhhhhccCcccceeeee
Confidence 999999999999999999866666554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=121.13 Aligned_cols=144 Identities=15% Similarity=0.221 Sum_probs=111.4
Q ss_pred EEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEEcCCCcEEEEEe---cC-C
Q 000424 20 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR--LPVLYVAYADGLIRAYNIHTYAVHYTLQ---LD-N 93 (1525)
Q Consensus 20 ~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~--g~~LaSGs~DgtIrIWDi~t~k~l~tL~---H~-~ 93 (1525)
.|.++. +..+|.+++... +.....+++ |...++.+.|... ...+.+|+.||+||+||+++......+. +. .
T Consensus 42 ~vav~l-Sngsv~lyd~~t-g~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 42 AVAVSL-SNGSVRLYDKGT-GQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eEEEEe-cCCeEEEEeccc-hhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 355555 478888888544 555666666 8888888888763 3468999999999999999887666665 43 4
Q ss_pred ceeecCceeEEEeCCCCEEEEEe----CCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCC-CEEEEEECCCCeeEE
Q 000424 94 TIKLLGAGAFAFHPTLEWLFVGD----RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML-RLLVTLCRDGSLQVW 168 (1525)
Q Consensus 94 ~V~~~g~~sVaFsPdg~~LaSgS----~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg-~lLaSgS~DgtIkIW 168 (1525)
+.. |++-.-.++.+++|. .|-.|.+||++...+.+-...+.|.+.|+++.|||.. .+|+|||.||-|.++
T Consensus 119 ~f~-----~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 119 PFI-----CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred cce-----EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 566 777665677777775 6788999999975333444567899999999999965 589999999999999
Q ss_pred Eee
Q 000424 169 KTR 171 (1525)
Q Consensus 169 Dlr 171 (1525)
|++
T Consensus 194 D~~ 196 (376)
T KOG1188|consen 194 DTK 196 (376)
T ss_pred ecC
Confidence 986
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-10 Score=130.21 Aligned_cols=152 Identities=15% Similarity=0.196 Sum_probs=126.4
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
=|.||++|+..+.|.++ .+..|.+||..+. ..+..+.+ |.+.+.||.++++|..|.+|+.|.+||.||++.++.+..
T Consensus 512 CyALa~spDakvcFscc-sdGnI~vwDLhnq-~~VrqfqG-htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCC-SDGNIAVWDLHNQ-TLVRQFQG-HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred hhhhhcCCccceeeeec-cCCcEEEEEcccc-eeeecccC-CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 36789999988876666 5999999996443 34445555 999999999999999999999999999999998876544
Q ss_pred EecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEE
Q 000424 89 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 89 L~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIW 168 (1525)
.+-...|. ++.++|++.|++.|-..+.|.|-.++...+.. +..|.+-|.++.|.+.|++++|.+.|.-+..|
T Consensus 589 hdF~SQIf-----SLg~cP~~dWlavGMens~vevlh~skp~kyq---lhlheScVLSlKFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 589 HDFSSQIF-----SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred hhhhhhhe-----ecccCCCccceeeecccCcEEEEecCCcccee---ecccccEEEEEEecccCceeeecCchhhhhhc
Confidence 44457788 99999999999999999999888777432222 34789999999999999999999999999999
Q ss_pred Eee
Q 000424 169 KTR 171 (1525)
Q Consensus 169 Dlr 171 (1525)
..-
T Consensus 661 rtP 663 (705)
T KOG0639|consen 661 RTP 663 (705)
T ss_pred cCc
Confidence 753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=111.97 Aligned_cols=149 Identities=20% Similarity=0.339 Sum_probs=118.2
Q ss_pred cCCCCEEEEE-EeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCcEEEEEe-c
Q 000424 15 TPLQPVVFFG-FHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTYAVHYTLQ-L 91 (1525)
Q Consensus 15 hP~~p~Vf~s-~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-DgtIrIWDi~t~k~l~tL~-H 91 (1525)
+++...++.. ...+..+.+|+..........+.. |...|+.++|+|++..+++++. |+.+++|+......+.++. |
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 7777734444 333777888875331444455555 9999999999999998888885 9999999999988999999 9
Q ss_pred CCceeecCceeEEEeCCCC-EEEEEeCCCcEEEEeCCCCCceeeE-eecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 92 DNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIERPSMIG-IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 92 ~~~V~~~g~~sVaFsPdg~-~LaSgS~DgtIrVWDv~t~~~s~i~-il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
...+. +++|+|++. .+++++.|++|++||... ..... .+.+|...+ ...|+|++.++++++.|+.+++||
T Consensus 198 ~~~v~-----~~~~~~~~~~~~~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 269 (466)
T COG2319 198 TDPVS-----SLAFSPDGGLLIASGSSDGTIRLWDLST--GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD 269 (466)
T ss_pred CCceE-----EEEEcCCcceEEEEecCCCcEEEEECCC--CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence 99999 999999998 555558999999998883 33333 466887775 448999999999999999999999
Q ss_pred eee
Q 000424 170 TRV 172 (1525)
Q Consensus 170 lr~ 172 (1525)
.+.
T Consensus 270 ~~~ 272 (466)
T COG2319 270 LRS 272 (466)
T ss_pred ecC
Confidence 873
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-09 Score=117.77 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=118.0
Q ss_pred EEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCC-CcEEEEEe
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHT-YAVHYTLQ 90 (1525)
Q Consensus 13 A~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t-~k~l~tL~ 90 (1525)
+|+|-..---++...+.++..|+.. ..++...|...|...|+.++|+|+.. +|++|++||.|||||.+. ..+++++.
T Consensus 177 ~WspHHdgnqv~tt~d~tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATTSDSTLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEeCCCcEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 5777433223334457888899975 45566777778999999999999876 689999999999999874 46788888
Q ss_pred -cCCceeecCceeEEEeCC-CCEEEEEeCCCcEEEEeCCCC--C-------------------------ceeeEeecccC
Q 000424 91 -LDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIE--R-------------------------PSMIGIIQVGS 141 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPd-g~~LaSgS~DgtIrVWDv~t~--~-------------------------~s~i~il~gH~ 141 (1525)
|...|. +|.|+|. .+.|++||.|..|.+|...+- . .-.+..++.|.
T Consensus 256 ~HsHWvW-----~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 256 GHSHWVW-----AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred CCceEEE-----EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 999999 9999994 578999999999999976531 0 01113567899
Q ss_pred cCeEEEEEcCCCCE-EEEEECCCCeeEEEe
Q 000424 142 QPITSVAWLPMLRL-LVTLCRDGSLQVWKT 170 (1525)
Q Consensus 142 ~~VtsIafsPdg~l-LaSgS~DgtIkIWDl 170 (1525)
+.|.+++|+.-.++ |+|-|.||.+.|=.+
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 99999999987775 678899998876544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-09 Score=125.73 Aligned_cols=134 Identities=14% Similarity=0.208 Sum_probs=105.8
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecC-------------C--------------ccceEEccCCCCCeEEEEEcCC
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEG-------------G--------------RAPTKIKTDLKKPIVNLACHPR 62 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~-------------g--------------k~~t~ik~~H~~~V~sIaf~P~ 62 (1525)
--|.|-|-.+.+|+.++.+....+++..-. + .++....- -++.|...+|+||
T Consensus 223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~D 301 (636)
T KOG2394|consen 223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPD 301 (636)
T ss_pred EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe-ccccccceeEcCC
Confidence 346677777778888877777766643100 0 01111111 2357888999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccC
Q 000424 63 LPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS 141 (1525)
Q Consensus 63 g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~ 141 (1525)
|++||+-+.||.+||+|..+.+++..++ .-+... ||+|||||+||++|+.|-.|.||.+. .+.+++--++|.
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-----CvcWSPDGKyIvtGGEDDLVtVwSf~--erRVVARGqGHk 374 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-----CVCWSPDGKYIVTGGEDDLVTVWSFE--ERRVVARGQGHK 374 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHHHHHHhhccceE-----EEEEcCCccEEEecCCcceEEEEEec--cceEEEeccccc
Confidence 9999999999999999999988888887 667888 99999999999999999999999998 577777778999
Q ss_pred cCeEEEEEcC
Q 000424 142 QPITSVAWLP 151 (1525)
Q Consensus 142 ~~VtsIafsP 151 (1525)
+.|+.|+|.|
T Consensus 375 SWVs~VaFDp 384 (636)
T KOG2394|consen 375 SWVSVVAFDP 384 (636)
T ss_pred cceeeEeecc
Confidence 9999999984
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-08 Score=110.50 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=111.2
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEee--------cCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTV--------EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYN 79 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtv--------e~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWD 79 (1525)
+-+.-|++|...+++.+. ...++.+...- +.++.+..-...|.++|+.++|| +.+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEec-CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 344557888888866554 57777665431 12343444445699999999999 56677765 59999997
Q ss_pred cCCCc------EEEEEe---cC-----CceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeE
Q 000424 80 IHTYA------VHYTLQ---LD-----NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPIT 145 (1525)
Q Consensus 80 i~t~k------~l~tL~---H~-----~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~Vt 145 (1525)
..... .+..+. |. -.|+ ++-..|..+.++.++.|+.+..||+++. .+...+.+|+++|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeIN-----am~ldP~enSi~~AgGD~~~y~~dlE~G--~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEIN-----AMWLDPSENSILFAGGDGVIYQVDLEDG--RIQREYRGHTDYVH 160 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccc-----eeEeccCCCcEEEecCCeEEEEEEecCC--EEEEEEcCCcceee
Confidence 54321 111111 33 2355 8888898888888889999999999964 44455889999999
Q ss_pred EEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 146 SVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 146 sIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
+++-......++||++||++|+||.++
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccc
Confidence 999866666788999999999999983
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-08 Score=109.98 Aligned_cols=153 Identities=22% Similarity=0.361 Sum_probs=121.0
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEE-
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHY- 87 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~- 87 (1525)
..++|+|....++.+...+..+.+|+... ......+.. |...|.+++|+|+++ .+++++.|++|++||...+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~ 236 (466)
T COG2319 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236 (466)
T ss_pred EEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee
Confidence 35999999986666643378888888544 444445555 999999999999998 56666999999999998888887
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
.+. |..... . .|+|++..+++++.|+.+++||......... ...+|...|.++.|+|++..+++++.|+.++
T Consensus 237 ~~~~~~~~~~-----~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~ 309 (466)
T COG2319 237 TLSGHSDSVV-----S-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR-TLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309 (466)
T ss_pred ecCCCCccee-----E-eECCCCCEEEEecCCCcEEEeeecCCCcEEE-EEecCCccEEEEEECCCCCEEEEeeCCCcEE
Confidence 566 665522 2 7899998899999999999999986433122 2368899999999999888888899999999
Q ss_pred EEEee
Q 000424 167 VWKTR 171 (1525)
Q Consensus 167 IWDlr 171 (1525)
+||.+
T Consensus 310 ~~~~~ 314 (466)
T COG2319 310 LWDLE 314 (466)
T ss_pred EEEcC
Confidence 99876
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=119.60 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=122.4
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTL 89 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL 89 (1525)
||.+||....++...+++..|.+||+ .+..+.......|+.|.++|+|+|... +|++-+.|..|.+||+.+.+...++
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv-~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDV-QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEec-cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 99999999999999999999999995 555555555667999999999999876 7899999999999999988888888
Q ss_pred ecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEE
Q 000424 90 QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 158 (1525)
Q Consensus 90 ~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaS 158 (1525)
....+.. +|+|.++|.+|+.|+..|.|..||++. .+..+.++.+|...|++++|-|.. .+++
T Consensus 248 ~y~~Pls-----tvaf~~~G~~L~aG~s~G~~i~YD~R~-~k~Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 248 TYSHPLS-----TVAFSECGTYLCAGNSKGELIAYDMRS-TKAPVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred eecCCcc-----eeeecCCceEEEeecCCceEEEEeccc-CCCCceEeeecccceeEEEeeecc-eeee
Confidence 8778888 999999999999999999999999995 455566788999999999998875 4444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=116.61 Aligned_cols=157 Identities=16% Similarity=0.241 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC-cEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTY-AVH 86 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~-k~l 86 (1525)
---|+|||..|.++++.+.+.+|.+.+-.+.+......+ ..+.|-.++|+|... .|+++..||+++-+|++.. +++
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence 345899999999999999999999988765433333333 367899999999876 6888999999999999876 899
Q ss_pred EEEe-cCCceeecCceeEEEeCC-CCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC-EEEEEECCC
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDG 163 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPd-g~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~Dg 163 (1525)
.+++ |...|. ++++++. ...++++|.|++|++|++.......+....-......|.++.|+-. +++.|+..+
T Consensus 367 wt~~AHd~~IS-----gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 367 WTLKAHDDEIS-----GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred eEEEeccCCcc-----eEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc
Confidence 9999 999999 9999985 4567788899999999987533333321111123466888888866 466777777
Q ss_pred CeeEEEeee
Q 000424 164 SLQVWKTRV 172 (1525)
Q Consensus 164 tIkIWDlr~ 172 (1525)
.++|||+-+
T Consensus 442 ~~~vwd~~~ 450 (463)
T KOG0270|consen 442 VLRVWDIFT 450 (463)
T ss_pred eEEEeeccc
Confidence 899999753
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-08 Score=116.84 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=122.7
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
+|.---||.||..+.++++.+ ++.+.+|+ +.+..+... -..++.+++|||.| .+|.|...|...+.|..+ +.
T Consensus 368 ~delwgla~hps~~q~~T~gq-dk~v~lW~---~~k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~ 439 (626)
T KOG2106|consen 368 GDELWGLATHPSKNQLLTCGQ-DKHVRLWN---DHKLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTET-QD 439 (626)
T ss_pred ccceeeEEcCCChhheeeccC-cceEEEcc---CCceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEeccc-ce
Confidence 444556899999999877775 88999998 333333333 35899999999999 999999999999999988 44
Q ss_pred EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCC
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 86 l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dgt 164 (1525)
+.++. ...+++ +++|+|+|.+|+.||.|+.|.||-+......+...-..|.++|+.+.|++|+++|.+-|-|-.
T Consensus 440 lv~~~~d~~~ls-----~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 440 LVTIHTDNEQLS-----VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred eEEEEecCCceE-----EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceE
Confidence 55555 678899 999999999999999999999998875433333223334589999999999999999999999
Q ss_pred eeEEEe
Q 000424 165 LQVWKT 170 (1525)
Q Consensus 165 IkIWDl 170 (1525)
|-.|..
T Consensus 515 iLyW~~ 520 (626)
T KOG2106|consen 515 ILYWKP 520 (626)
T ss_pred EEEEcc
Confidence 999943
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=112.80 Aligned_cols=150 Identities=18% Similarity=0.268 Sum_probs=112.3
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCC----c-
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTY----A- 84 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~----k- 84 (1525)
.+|||| +-..|.....+..|.+++. ..+++++++......|.+++|-|-+ ..|++||..| |.||..... .
T Consensus 103 ~~aWhq-H~~~fava~nddvVriy~k--sst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 103 GVAWHQ-HIIAFAVATNDDVVRIYDK--SSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN 178 (445)
T ss_pred eEeech-hhhhhhhhccCcEEEEecc--CCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence 578998 4444444455777777764 3478889988788999999999975 4789999865 899975421 1
Q ss_pred -------EEEEEe--cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC
Q 000424 85 -------VHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 154 (1525)
Q Consensus 85 -------~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~ 154 (1525)
+...++ ...+|+ +++|.+||..+++++ .|..|.|||..+.....+ .-.....++-+.||||+.
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVt-----smqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVT-----SMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccchhheeCCCCceee-----EEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCCC
Confidence 222334 236788 999999999999999 899999999997422222 112356778899999999
Q ss_pred EEEEEECCCCeeEEEee
Q 000424 155 LLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 155 lLaSgS~DgtIkIWDlr 171 (1525)
+|+.++-|+..++|...
T Consensus 252 ~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQEN 268 (445)
T ss_pred EEEEecccceeeeehhc
Confidence 99999999999999544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=120.11 Aligned_cols=199 Identities=19% Similarity=0.236 Sum_probs=140.5
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecC--------CccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG--------GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRA 77 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~--------gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrI 77 (1525)
-|..=+++|||..|.++.+. -+..+.+|.. ++ ..+...++. |+++|.|+++.+.+..+++|+.||+|+.
T Consensus 294 ~d~ir~l~~~~sep~lit~s-ed~~lk~WnL-qk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITAS-EDGTLKLWNL-QKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhhhhcCCCCCeEEEec-cccchhhhhh-cccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCceeee
Confidence 45667899999999987665 5888888886 22 123344444 9999999999999999999999999999
Q ss_pred EEcC-------CC---cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEe----------
Q 000424 78 YNIH-------TY---AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGI---------- 136 (1525)
Q Consensus 78 WDi~-------t~---k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~i---------- 136 (1525)
|++. +. ....++. |.+.|. .+++|+....|+++|.||||+.|+.........+.
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw-----~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVW-----LLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eccCCCCCcccccCcchhccceecccccee-----eeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence 9543 11 2335566 999999 99999999999999999999999876421100000
Q ss_pred --------------------------------ec-------ccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCC
Q 000424 137 --------------------------------IQ-------VGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPN 177 (1525)
Q Consensus 137 --------------------------------l~-------gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~ 177 (1525)
+. .-...++-+.+||.+++.+++-.|++|+++|..+..--
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l- 524 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL- 524 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc-
Confidence 00 01124567888999899999999999999887632110
Q ss_pred CCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccccccc
Q 000424 178 RPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYT 246 (1525)
Q Consensus 178 ~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~ 246 (1525)
+.+ +-.+..+..+++.|++..+. +++-|..++.|+.
T Consensus 525 -~s~--------------------------~a~~~svtslai~~ng~~l~------s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 525 -HSM--------------------------VAHKDSVTSLAIDPNGPYLM------SGSHDGSVRLWKL 560 (577)
T ss_pred -hhe--------------------------eeccceecceeecCCCceEE------eecCCceeehhhc
Confidence 000 11122467788888888776 6666666666664
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=111.45 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCce
Q 000424 54 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS 132 (1525)
Q Consensus 54 V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s 132 (1525)
..++.|++.|.+||+||.||.|-|||+.|...-+.+. |-.+|. +++||+||+.|+++|.|..|++||+... +
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~-----sl~WS~dgr~LltsS~D~si~lwDl~~g--s 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPIT-----SLCWSRDGRKLLTSSRDWSIKLWDLLKG--S 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccccee-----EEEecCCCCEeeeecCCceeEEEeccCC--C
Confidence 7889999999999999999999999999999888899 999999 9999999999999999999999999964 2
Q ss_pred eeEeecccCcCeEEEEEcCCCC-EEEEEECCCCeeEEE
Q 000424 133 MIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWK 169 (1525)
Q Consensus 133 ~i~il~gH~~~VtsIafsPdg~-lLaSgS~DgtIkIWD 169 (1525)
+...+ .-.++|+.+.|||..+ ..+.+=.+..-.+-+
T Consensus 99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVID 135 (405)
T ss_pred ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEE
Confidence 22111 2478999999999654 333333344333333
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=116.16 Aligned_cols=161 Identities=11% Similarity=0.183 Sum_probs=112.7
Q ss_pred cCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k 84 (1525)
+.-|++.+.|+-..-.+..+...+.-+.+|-.-...-.+-.+...-.+.-.|+++.....++++|+..++|+|||++...
T Consensus 33 ~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 33 AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 33456666666655455555545555544432111000111111112345567777777899999999999999999877
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC-EEEEEECC
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRD 162 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~D 162 (1525)
+++.++ |.+.|+ +|.|+....||++++..|.|.|..+.+..+.-. +..+..+.|+-+.|||..+ +|.++|++
T Consensus 113 ~hr~lkdh~stvt-----~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~-f~~~sgqsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 113 IHRFLKDHQSTVT-----YVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT-FTIDSGQSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred HhhhccCCcceeE-----EEEecCCcceeEEeccCCcEEEEecccCccccc-eecCCCCeEEEeecccccceeeEeeccC
Confidence 888888 999999 999999999999999999999999987422111 1123346678999999766 56789999
Q ss_pred CCeeEEEee
Q 000424 163 GSLQVWKTR 171 (1525)
Q Consensus 163 gtIkIWDlr 171 (1525)
|+|.+||+.
T Consensus 187 G~VtlwDv~ 195 (673)
T KOG4378|consen 187 GAVTLWDVQ 195 (673)
T ss_pred CeEEEEecc
Confidence 999999997
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-09 Score=131.89 Aligned_cols=153 Identities=18% Similarity=0.293 Sum_probs=119.7
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEE-ccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEE
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTL 89 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~i-k~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL 89 (1525)
|.|+|.++.++.+..++..|.+||.-. ...+... ...-.+.|.+++|+..-. +|++++.+|++-|||++..+++-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn-~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNK-PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCC-cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence 889999998899999999999999643 3222222 112457899999997654 6899999999999999999888888
Q ss_pred e-cCC--ceeecCceeEEEeCCC-CEEEEEe-C--CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCC-CEEEEEEC
Q 000424 90 Q-LDN--TIKLLGAGAFAFHPTL-EWLFVGD-R--RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML-RLLVTLCR 161 (1525)
Q Consensus 90 ~-H~~--~V~~~g~~sVaFsPdg-~~LaSgS-~--DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg-~lLaSgS~ 161 (1525)
. |.. .+. .|.|||+. ..+++++ + +-.|.+||++. ......++++|...|.+++|++.. ++++||+.
T Consensus 201 s~~~~~~~~S-----~l~WhP~~aTql~~As~dd~~PviqlWDlR~-assP~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 201 SDTPGRMHCS-----VLAWHPDHATQLLVASGDDSAPVIQLWDLRF-ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred ccCCCcccee-----eeeeCCCCceeeeeecCCCCCceeEeecccc-cCCchhhhcccccceeeeccCCCCchhhhcccC
Confidence 7 543 356 89999986 3455555 3 34699999994 233334578999999999999976 89999999
Q ss_pred CCCeeEEEee
Q 000424 162 DGSLQVWKTR 171 (1525)
Q Consensus 162 DgtIkIWDlr 171 (1525)
|+.|.+|+.+
T Consensus 275 D~~ii~wN~~ 284 (1049)
T KOG0307|consen 275 DNRIICWNPN 284 (1049)
T ss_pred CCCeeEecCC
Confidence 9999999875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=117.76 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=117.7
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCc----
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYA---- 84 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k---- 84 (1525)
.-+.|+...+.++++-+-. ...+|+...++...+.+.. |+..|+++++||..+ +||+|+.|++.+|||++...
T Consensus 283 s~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 283 SSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred eeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC
Confidence 3456667778888877644 6778888777777777777 999999999999987 58999999999999987542
Q ss_pred -EEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC---CC--CceeeEeecccCcC------eEEEEEcCC
Q 000424 85 -VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS---IE--RPSMIGIIQVGSQP------ITSVAWLPM 152 (1525)
Q Consensus 85 -~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~---t~--~~s~i~il~gH~~~------VtsIafsPd 152 (1525)
.+.++.|...|. +..|||++..|++.+.|..|+|||.. .. ....+ .|+.. ..-..|+|+
T Consensus 361 p~lst~~HrrsV~-----sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I----~Hn~~t~RwlT~fKA~W~P~ 431 (498)
T KOG4328|consen 361 PFLSTLPHRRSVN-----SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI----PHNNRTGRWLTPFKAAWDPD 431 (498)
T ss_pred cceecccccceee-----eeEEcCCCCceEeeccCCceEEeecccccccCCcccee----eccCcccccccchhheeCCC
Confidence 245555999999 99999988889999999999999984 11 22223 23321 235789999
Q ss_pred CCEEEEEECCCCeeEEEee
Q 000424 153 LRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 153 g~lLaSgS~DgtIkIWDlr 171 (1525)
..+|+.|-.-..|-|+|-.
T Consensus 432 ~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 432 YNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred ccEEEEeccCcceeEEcCC
Confidence 9999999887778877754
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=112.19 Aligned_cols=145 Identities=12% Similarity=0.202 Sum_probs=110.6
Q ss_pred CEEEEEEeccceEEEEEeecCC--------ccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--cEE--
Q 000424 19 PVVFFGFHRRMSVTVVGTVEGG--------RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY--AVH-- 86 (1525)
Q Consensus 19 p~Vf~s~~~d~sV~v~dtve~g--------k~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~--k~l-- 86 (1525)
.+++.+...+..+.+|+..++. +++..-...|+++|.++.+.+.-..=++|+.+..+-.|++... .+.
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 3455666678899888865531 1122222349999999999976666678888888999987532 222
Q ss_pred EEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
.++. ..-.|. .+...||++.+++++.|+.||||++++. ...+++.-|+..|++++|||+.++++.+|.|++|
T Consensus 245 ~e~~lknpGv~-----gvrIRpD~KIlATAGWD~RiRVyswrtl--~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 245 KEITLKNPGVS-----GVRIRPDGKILATAGWDHRIRVYSWRTL--NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred ceEEecCCCcc-----ceEEccCCcEEeecccCCcEEEEEeccC--CchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 2222 334566 7888999999999999999999999964 3334578999999999999999999999999999
Q ss_pred eEEEe
Q 000424 166 QVWKT 170 (1525)
Q Consensus 166 kIWDl 170 (1525)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99985
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=117.35 Aligned_cols=114 Identities=22% Similarity=0.340 Sum_probs=88.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCC--------------CcE--------------EEEEe-cCCceeecCc
Q 000424 51 KKPIVNLACHPRLP-VLYVAYADGLIRAYNIHT--------------YAV--------------HYTLQ-LDNTIKLLGA 100 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t--------------~k~--------------l~tL~-H~~~V~~~g~ 100 (1525)
+..|++|.|-|.++ .|+++..+|.+.+||... +.. +.... ....++
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in---- 294 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN---- 294 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc----
Confidence 46899999998765 688888999999997431 111 11112 234556
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 101 GAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 101 ~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.++|+|||++|++.|.||.+||+|..+ ..+.++++..-....|++|+|||+||+||++|.-|.||.+.
T Consensus 295 -~f~FS~DG~~LA~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 295 -EFAFSPDGKYLATVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred -ceeEcCCCceEEEEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 889999999999999999999999995 33333344455678999999999999999999999999864
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=106.50 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=120.6
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCC-ccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCC-
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI-HTY- 83 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g-k~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi-~t~- 83 (1525)
...+--||++++..+.++.. ...+.++...... +...-...+|.+.|++|+|+|..+.+++|+.|+.-.+|.. ..+
T Consensus 11 ~pitchAwn~drt~iAv~~~-~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPN-NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccC-CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 34455678888887777663 4566555543333 3333333459999999999999999999999999999987 333
Q ss_pred -cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceee--EeecccCcCeEEEEEcCCCCEEEEE
Q 000424 84 -AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI--GIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 84 -k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i--~il~gH~~~VtsIafsPdg~lLaSg 159 (1525)
++.-.+. ++...+ +|.|+|.++.+++||.-+.|.||=++.+..-.+ .+-..+.+.|++++|||+.-+|++|
T Consensus 90 WkptlvLlRiNrAAt-----~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 90 WKPTLVLLRINRAAT-----CVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred eccceeEEEecccee-----eEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3444444 889999 999999999999999999999998876311111 1234678889999999999999999
Q ss_pred ECCCCeeEEEe
Q 000424 160 CRDGSLQVWKT 170 (1525)
Q Consensus 160 S~DgtIkIWDl 170 (1525)
|.|+.++|+..
T Consensus 165 s~D~k~rVfSa 175 (361)
T KOG1523|consen 165 STDGKCRVFSA 175 (361)
T ss_pred ccCcceeEEEE
Confidence 99999999975
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=111.02 Aligned_cols=181 Identities=17% Similarity=0.258 Sum_probs=117.8
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEEcCC--Cc--EEEEEe------cCCceeecCceeEEEeC-CCCE
Q 000424 48 TDLKKPIVNLACHPRLP-----VLYVAYADGLIRAYNIHT--YA--VHYTLQ------LDNTIKLLGAGAFAFHP-TLEW 111 (1525)
Q Consensus 48 ~~H~~~V~sIaf~P~g~-----~LaSGs~DgtIrIWDi~t--~k--~l~tL~------H~~~V~~~g~~sVaFsP-dg~~ 111 (1525)
.+|.-|++.+.|.|+.. +||+++ -.+|+|.+.. .+ +...+. +..+++ +++|+- |.++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlT-----SFDWne~dp~~ 165 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLT-----SFDWNEVDPNL 165 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccc-----ccccccCCcce
Confidence 36999999999999862 455543 3699999873 21 112222 456777 999987 7789
Q ss_pred EEEEeCCCcEEEEeCCCC-CceeeEeecccCcCeEEEEEcCCC-CEEEEEECCCCeeEEEeeeec-------CCC-----
Q 000424 112 LFVGDRRGTLLAWDVSIE-RPSMIGIIQVGSQPITSVAWLPML-RLLVTLCRDGSLQVWKTRVII-------NPN----- 177 (1525)
Q Consensus 112 LaSgS~DgtIrVWDv~t~-~~s~i~il~gH~~~VtsIafsPdg-~lLaSgS~DgtIkIWDlr~~~-------~p~----- 177 (1525)
|.++|-|-|..|||+++. ...+...+-+|...|..|+|...+ ..|+|++.||+||++|+|..- .|.
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence 999999999999999974 111222233899999999999854 589999999999999999221 111
Q ss_pred --------CCCCccccccC-CCcccccccccccccCCcceecC----CCeeEEEEecCC-CeEEEEecccccCCcccccc
Q 000424 178 --------RPPMQANFFEP-ASIESIDIPRILSQQGGEAVYPL----PRVRALEVHPRL-NLAVLLFANFTGGDNIKNRA 243 (1525)
Q Consensus 178 --------~~~~~a~~f~p-~~Iesldi~~iLs~~gG~~vy~l----~~V~~v~~HP~~-Nlial~F~~~s~~Dd~~~k~ 243 (1525)
+++..+.|... ..|.-+|+..- +..+..+ ..|+.++|+|.. +.+. ++|||.+.-+
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P-----~tpva~L~~H~a~VNgIaWaPhS~~hic------taGDD~qali 314 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----CTPVARLRNHQASVNGIAWAPHSSSHIC------TAGDDCQALI 314 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCC-----CcceehhhcCcccccceEecCCCCceee------ecCCcceEEE
Confidence 11222222111 11222232210 0001111 368999999984 4444 8999999888
Q ss_pred ccc
Q 000424 244 AYT 246 (1525)
Q Consensus 244 ~~~ 246 (1525)
|..
T Consensus 315 WDl 317 (364)
T KOG0290|consen 315 WDL 317 (364)
T ss_pred Eec
Confidence 874
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-08 Score=117.86 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=103.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe----cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeC
Q 000424 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ----LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~----H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv 126 (1525)
+..++.++..|+..+++++|.|+.|||||+.+++..++|+ |++... .|...|.|.|+++...|.++.++|.
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-----Kv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-----KVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-----EEEECCCccEEEEeecCCceEEEEe
Confidence 3568899999999999999999999999999999999998 556677 7889999999999999999999999
Q ss_pred CCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 127 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 127 ~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.+ ..+++.+.||...|+.+.|.+|.++|++.|.||.|.||.+.
T Consensus 671 ~s--gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 671 VS--GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cc--chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 95 44555566999999999999999999999999999999886
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-08 Score=120.53 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=104.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe--cCCceeecCceeEEEeC--CCCEEEEEeCCCcEEE
Q 000424 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLA 123 (1525)
Q Consensus 48 ~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--H~~~V~~~g~~sVaFsP--dg~~LaSgS~DgtIrV 123 (1525)
.+|++=|++++|+.+|.+|++|++|..+.|||.-..++++.+. |...|. ++.|-| ..+.++||+.|..|++
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF-----svKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIF-----SVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccccee-----EEeeeccCCCeEEEeccCcceEEE
Confidence 3699999999999999999999999999999999999999999 999999 999998 3567889999999999
Q ss_pred EeCCCC--------CceeeEeecccCcCeEEEEEcCCC-CEEEEEECCCCeeEEEeee
Q 000424 124 WDVSIE--------RPSMIGIIQVGSQPITSVAWLPML-RLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 124 WDv~t~--------~~s~i~il~gH~~~VtsIafsPdg-~lLaSgS~DgtIkIWDlr~ 172 (1525)
+|+.+. .......+..|...|..|+-.|++ ..+-++|+||+|+-+|+|.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 999851 111112345799999999999999 5788999999999999983
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=112.73 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=109.7
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCC-cE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTY-AV 85 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-DgtIrIWDi~t~-k~ 85 (1525)
...-+||||..+..+.-..-..++-++. ..+..+...+. +|.+.|+-+.|+++|+.|++|+. |-.|-.||++.. .+
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~-~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYN-DDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEe-cCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 3456899999885554443344444444 34445555554 59999999999999999999875 778999999854 56
Q ss_pred EEEEe-cCC---ceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEEC
Q 000424 86 HYTLQ-LDN---TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 86 l~tL~-H~~---~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~ 161 (1525)
+..|. |.. ... .++..|++++|++|+.||.|++||+.+. ...+..+..|+..|+.+++||-.++++|+|.
T Consensus 287 v~~L~rhv~~TNQRI-----~FDld~~~~~LasG~tdG~V~vwdlk~~-gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 287 VYALERHVGDTNQRI-----LFDLDPKGEILASGDTDGSVRVWDLKDL-GNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhccCccceE-----EEecCCCCceeeccCCCccEEEEecCCC-CCcccccccccccccceecCcccceeeeccC
Confidence 77777 543 333 4566799999999999999999999973 1222235578999999999999999999985
Q ss_pred C
Q 000424 162 D 162 (1525)
Q Consensus 162 D 162 (1525)
.
T Consensus 361 q 361 (406)
T KOG2919|consen 361 Q 361 (406)
T ss_pred c
Confidence 4
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-07 Score=105.99 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=119.4
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecC----CccceEEcc-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEG----GRAPTKIKT-DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~----gk~~t~ik~-~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
.|.|+..+.|+..|. +++.+.+|..-+. ..++..+++ -|...|.|++|+-....+++|..+++|...|+.+.+.
T Consensus 61 AlqFS~N~~~L~SGG-DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs 139 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGG-DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQS 139 (609)
T ss_pred eeeeccCCeEEeecC-CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccccee
Confidence 477888877775554 7899999986332 223334444 3557899999998888999999999999999999999
Q ss_pred EEEEecCC---ceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCC--ceeeEeecccCcCeEEEEEcCCCC-EEEEE
Q 000424 86 HYTLQLDN---TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER--PSMIGIIQVGSQPITSVAWLPMLR-LLVTL 159 (1525)
Q Consensus 86 l~tL~H~~---~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~--~s~i~il~gH~~~VtsIafsPdg~-lLaSg 159 (1525)
+..+.|.+ .|. .+..||..+.+++.++++.|.+||.+... ...+ ..........++-|||..+ +|++.
T Consensus 140 i~V~~~~~~~~~VY-----~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 140 IYVANENNNRGDVY-----HMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred eeeecccCccccee-----ecccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeeeecCCCceeEEec
Confidence 99998655 777 99999999999999999999999998531 1111 1112244567899999755 77889
Q ss_pred ECCCCeeEEEee
Q 000424 160 CRDGSLQVWKTR 171 (1525)
Q Consensus 160 S~DgtIkIWDlr 171 (1525)
+..+.+.+||.|
T Consensus 214 ~~~~G~~~~D~R 225 (609)
T KOG4227|consen 214 SETGGPNVFDRR 225 (609)
T ss_pred cccCCCCceeec
Confidence 999999999998
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-08 Score=112.49 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=99.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC------CCcEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCc
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH------TYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 120 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~------t~k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~Dgt 120 (1525)
+|.+-|++|.|+.++++|++|++|..+++|++. +.+++.... |...|. |++|......+++|+.+++
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF-----~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIF-----SLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceE-----EEEEccCCeeEecCCCcce
Confidence 499999999999999999999999999999964 446676666 678999 9999999999999999999
Q ss_pred EEEEeCCCCCceeeEeecccCc---CeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 121 LLAWDVSIERPSMIGIIQVGSQ---PITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 121 IrVWDv~t~~~s~i~il~gH~~---~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
|...|+.+...-.+ -.|.. .|..+..||..+.|++.+.|+.|.+||.|-
T Consensus 129 VI~HDiEt~qsi~V---~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 129 VIKHDIETKQSIYV---ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred eEeeecccceeeee---ecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 99999996422222 14444 899999999999999999999999999983
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-07 Score=107.14 Aligned_cols=156 Identities=11% Similarity=0.141 Sum_probs=108.8
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEc-cCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCC--
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-TDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTY-- 83 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik-~~H~~~V~sIaf~P~g~~LaSGs~-DgtIrIWDi~t~-- 83 (1525)
.-..|+++|++.++|++...+..+.+++..+.++. ..+. ..+.+....++|+|+++++++++. ++.|.+||+.+.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 34578999999999998877888877775433321 1111 113345678999999998877664 889999998642
Q ss_pred --cEEEEEecCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceee------EeecccCcCeEEEEEcCCCC
Q 000424 84 --AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMI------GIIQVGSQPITSVAWLPMLR 154 (1525)
Q Consensus 84 --k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i------~il~gH~~~VtsIafsPdg~ 154 (1525)
+.+..+.+..... +++|+|+++++++++ .+++|.+||+.+. ..+. ..... ....+++.|+|+++
T Consensus 115 ~~~~~~~~~~~~~~~-----~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~ 187 (330)
T PRK11028 115 PVAPIQIIEGLEGCH-----SANIDPDNRTLWVPCLKEDRIRLFTLSDD-GHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCceeeccCCCccc-----EeEeCCCCCEEEEeeCCCCEEEEEEECCC-CcccccCCCceecCC-CCCCceEEECCCCC
Confidence 2233333333456 788999999997666 7799999999852 1110 00111 23457899999999
Q ss_pred EEEEEEC-CCCeeEEEee
Q 000424 155 LLVTLCR-DGSLQVWKTR 171 (1525)
Q Consensus 155 lLaSgS~-DgtIkIWDlr 171 (1525)
++++++. +++|.+||++
T Consensus 188 ~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EEEEEecCCCEEEEEEEe
Confidence 9987776 8999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-07 Score=106.38 Aligned_cols=159 Identities=13% Similarity=0.182 Sum_probs=108.8
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEcc-CCCCCeEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT-DLKKPIVNLACHPRLPVLYV-AYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~-~H~~~V~sIaf~P~g~~LaS-Gs~DgtIrIWDi~t~k~ 85 (1525)
.-.||+++|++.++|++...+..+.+++..+.+.....+.. .+.....+++++|+++++++ ...++.|++||+.+...
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 34699999999999999887888888886433322111111 13344677899999998754 55679999999976432
Q ss_pred EE-----EEe--cCCceeecCceeEEEeCCCCEEEEEeC-CCcEEEEeCCCC--CceeeEeecc------cCcCeEEEEE
Q 000424 86 HY-----TLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIE--RPSMIGIIQV------GSQPITSVAW 149 (1525)
Q Consensus 86 l~-----tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~-DgtIrVWDv~t~--~~s~i~il~g------H~~~VtsIaf 149 (1525)
+. ... .....+ .+.|+|+|+++++++. +++|.+||+... ....+..+.. +......+.|
T Consensus 161 l~~~~~~~~~~~~g~~p~-----~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPR-----HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred ccccCCCceecCCCCCCc-----eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 21 112 233455 8999999999988874 999999999731 1122222211 1223346899
Q ss_pred cCCCCEEEEEEC-CCCeeEEEee
Q 000424 150 LPMLRLLVTLCR-DGSLQVWKTR 171 (1525)
Q Consensus 150 sPdg~lLaSgS~-DgtIkIWDlr 171 (1525)
||++++++++.. +++|.+|++.
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEe
Confidence 999999888754 7899999985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-08 Score=119.48 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=115.8
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCC-----ccceEEccCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCcE
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGG-----RAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~g-----k~~t~ik~~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
+.|.|-.+.-+.-..++..|.+|..-.++ ..+.++.+.|.+.|+++.|||-- ..|+++++|.+|++||+.+.+.
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~ 712 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL 712 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh
Confidence 55678666655666678999999764332 23445555699999999999964 5899999999999999999998
Q ss_pred EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCe----EEEEEcCCCCEEEEEE
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI----TSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 86 l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~V----tsIafsPdg~lLaSgS 160 (1525)
...|. |.+.|. .++|||||+.+++.+.||+|+||+-++....+. ....+| -.|.|--+|++++..+
T Consensus 713 ~~~l~gHtdqIf-----~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~----Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 713 YSRLVGHTDQIF-----GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY----EGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred hheeccCcCcee-----EEEECCCCcceeeeecCceEEEeCCCCCCCccc----cCCCCccCcceeEEEEecCcEEEEec
Confidence 88899 999999 999999999999999999999999886322211 112222 3577888999888776
Q ss_pred CCC----CeeEEEee
Q 000424 161 RDG----SLQVWKTR 171 (1525)
Q Consensus 161 ~Dg----tIkIWDlr 171 (1525)
-|. .|.+||..
T Consensus 784 fdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQ 798 (1012)
T ss_pred ccccchhhhhhhhhh
Confidence 655 57777755
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.9e-07 Score=102.80 Aligned_cols=109 Identities=18% Similarity=0.271 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-c---CCceeecCceeEEEeCCCCEEEEEe--CCCcEEEEe
Q 000424 52 KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L---DNTIKLLGAGAFAFHPTLEWLFVGD--RRGTLLAWD 125 (1525)
Q Consensus 52 ~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H---~~~V~~~g~~sVaFsPdg~~LaSgS--~DgtIrVWD 125 (1525)
.+|.+|.++ .+.|+++-.+ .|.|||+++.+.++++. . ...+. ++.+++.+.|++--+ ..|.|.+||
T Consensus 88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~-----AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC-----ALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceE-----eeccCCCCceEEecCCCCCceEEEEE
Confidence 456666665 3456665544 49999999999999998 3 33444 566666677888654 689999999
Q ss_pred CCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCC-eeEEEe
Q 000424 126 VSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS-LQVWKT 170 (1525)
Q Consensus 126 v~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dgt-IkIWDl 170 (1525)
+.+- +.+..+.+|.+.+-+++||++|.+|||+|+.|| |||+++
T Consensus 160 ~~nl--~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 160 TINL--QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV 203 (391)
T ss_pred cccc--eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence 9953 333346799999999999999999999999997 667765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-06 Score=107.90 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=99.8
Q ss_pred cEEEEEEcCCCCEEEEEEecc--ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEE--EcCC
Q 000424 8 TEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAY--NIHT 82 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d--~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs-~DgtIrIW--Di~t 82 (1525)
.....+|+|++..++++...+ ..+.+++. +++.. ..+.. ..+....++|+|+|+.|+.++ .|+.+.|| |+.+
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl-~tg~~-~~l~~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDL-RSGAR-KVVAS-FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG 281 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeC-CCCce-EEEec-CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence 457799999999887776433 35777774 33321 12221 233345789999999887764 68876666 5666
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
+.. ..+. +...+. ...|+|||++|+.++ .++...||++........ .+ .|.. .+.+|+|+|++|+..+
T Consensus 282 ~~~-~~lt~~~~~~~-----~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l-~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 282 GTP-SQLTSGAGNNT-----EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV-GGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred CCe-EeeccCCCCcC-----CEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee-cCCC--CCccCCCCCCEEEEEc
Confidence 554 4455 666677 899999999877665 688899998764211111 11 3333 4578999999998888
Q ss_pred CCCCeeEEEee
Q 000424 161 RDGSLQVWKTR 171 (1525)
Q Consensus 161 ~DgtIkIWDlr 171 (1525)
.++ +.+||+.
T Consensus 352 ~~~-i~~~Dl~ 361 (429)
T PRK01742 352 GDN-VVKQDLT 361 (429)
T ss_pred CCC-EEEEECC
Confidence 765 4558864
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.3e-07 Score=104.43 Aligned_cols=156 Identities=13% Similarity=0.220 Sum_probs=122.6
Q ss_pred CcEEEEEEcCC-CCEEEEEEeccceEEEEEeecCCccceEEccCCC-CCeEEEEEcCCCCEEEEEE----CCCcEEEEEc
Q 000424 7 DTEVHLALTPL-QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLK-KPIVNLACHPRLPVLYVAY----ADGLIRAYNI 80 (1525)
Q Consensus 7 ~~e~hLA~hP~-~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~-~~V~sIaf~P~g~~LaSGs----~DgtIrIWDi 80 (1525)
++.--++|.-. +|-.+.++..+..|++|+............++|. .+-.+++.+-++..+++|. .|-.|.+||+
T Consensus 71 ~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDv 150 (376)
T KOG1188|consen 71 ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDV 150 (376)
T ss_pred CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEe
Confidence 34444566653 7777778888999999998776665555555576 5677888877888888875 3678999999
Q ss_pred CCCcE-EEEEe--cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCC-----CceeeEeecccCcCeEEEEEcC
Q 000424 81 HTYAV-HYTLQ--LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIE-----RPSMIGIIQVGSQPITSVAWLP 151 (1525)
Q Consensus 81 ~t~k~-l~tL~--H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~-----~~s~i~il~gH~~~VtsIafsP 151 (1525)
+..+. +..+. |.+.|+ +|+||| +.+.|+|||.||.|.++|+... ..+.+ -|...|.++.|+.
T Consensus 151 R~~qq~l~~~~eSH~DDVT-----~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi----N~~sSI~~igw~~ 221 (376)
T KOG1188|consen 151 RSEQQLLRQLNESHNDDVT-----QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI----NHGSSIHLIGWLS 221 (376)
T ss_pred ccccchhhhhhhhccCcce-----eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh----cccceeeeeeeec
Confidence 98876 77776 999999 999999 5688999999999999999852 11222 5678899999998
Q ss_pred CC-CEEEEEECCCCeeEEEee
Q 000424 152 ML-RLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 152 dg-~lLaSgS~DgtIkIWDlr 171 (1525)
++ +.|.+-+-+.+..+|+++
T Consensus 222 ~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 222 KKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred CCcceEEEEEccCceeEEEcc
Confidence 87 347777889999999986
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.7e-07 Score=106.42 Aligned_cols=159 Identities=14% Similarity=0.230 Sum_probs=124.2
Q ss_pred cccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecC--CccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEE
Q 000424 3 SISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG--GRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYN 79 (1525)
Q Consensus 3 ~~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~--gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWD 79 (1525)
+.|-.+.-.+.|||+.|.++++.- +..+.++. +++ ....+.+.. -+-||.+..|+|+|. .+++++.-.....||
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~-d~~lrifq-vDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGL-DGTLRIFQ-VDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecC-CCcEEEEE-ecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEee
Confidence 345567788999999999988874 77887776 444 233444444 467999999999998 899999999999999
Q ss_pred cCCCcEEEEEe---c-CCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCE
Q 000424 80 IHTYAVHYTLQ---L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRL 155 (1525)
Q Consensus 80 i~t~k~l~tL~---H-~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~l 155 (1525)
+.+.+..+.-. + ...+. .+..+|++++|+..+..|.|.+....+ ..+++.++ -.+.|..+.|+.+++.
T Consensus 287 le~ak~~k~~~~~g~e~~~~e-----~FeVShd~~fia~~G~~G~I~lLhakT--~eli~s~K-ieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSME-----RFEVSHDSNFIAIAGNNGHIHLLHAKT--KELITSFK-IEGVVSDFTFSSDSKE 358 (514)
T ss_pred ccccccccccCCCCcccchhh-----eeEecCCCCeEEEcccCceEEeehhhh--hhhhheee-eccEEeeEEEecCCcE
Confidence 98876543322 3 35677 788899999999999999999987774 33332222 2568899999999999
Q ss_pred EEEEECCCCeeEEEeee
Q 000424 156 LVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 156 LaSgS~DgtIkIWDlr~ 172 (1525)
|+.++.+|.|.+||++.
T Consensus 359 l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQ 375 (514)
T ss_pred EEEEcCCceEEEEecCC
Confidence 99999999999999984
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.6e-07 Score=110.85 Aligned_cols=159 Identities=18% Similarity=0.287 Sum_probs=116.6
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCcc----ceEEccCCCCCeEEEEEcCCCC--EEEEEECCCcEEEEEc
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA----PTKIKTDLKKPIVNLACHPRLP--VLYVAYADGLIRAYNI 80 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~----~t~ik~~H~~~V~sIaf~P~g~--~LaSGs~DgtIrIWDi 80 (1525)
..-.-++|+|..|.+++|+...+.|.+|+...+... .......|..+|..+.|-.+.. -|++++.||.|+.|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 344578999999999999999999999998766542 2222335899999999976544 4999999999999986
Q ss_pred CCC---------------------------------------------cEEE------------------EEe-cCCcee
Q 000424 81 HTY---------------------------------------------AVHY------------------TLQ-LDNTIK 96 (1525)
Q Consensus 81 ~t~---------------------------------------------k~l~------------------tL~-H~~~V~ 96 (1525)
+.. .+.+ .+. |.+.|+
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 421 0000 111 445555
Q ss_pred ecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC-CCceeeEeecccCcCeEEEEEcCCCC-EEEEEECCCCeeEEEeee
Q 000424 97 LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-ERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 97 ~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t-~~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~DgtIkIWDlr~ 172 (1525)
++.++|=+..++..+.|.+|+||.... ..+.+. ++.+...|++++|||..+ .|+++..||.+.+||+..
T Consensus 403 -----~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~--~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 403 -----AVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS--LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred -----eeecCCCccceeeeeccceeEeccccCCCCcchh--hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 888888666555555599999997762 223322 567788899999999876 677888899999999873
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=100.66 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=94.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcE-EEEe
Q 000424 50 LKKPIVNLACHPRLPVLYVAY--ADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL-LAWD 125 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs--~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtI-rVWD 125 (1525)
|...+.++++|+.+.++|.-+ ..|.|.|||..+-+++.++. |++.+- +++|+++|.+|+++|+-||| ||+.
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lA-----alafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLA-----ALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCcee-----EEEECCCCCEEEEeccCceEEEEEE
Confidence 555677777777777887632 35889999999999999999 999999 99999999999999988875 8999
Q ss_pred CCCCCceeeEeeccc-CcCeEEEEEcCCCCEEEEEECCCCeeEEEeeee
Q 000424 126 VSIERPSMIGIIQVG-SQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 126 v~t~~~s~i~il~gH-~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~ 173 (1525)
+.+. ..+..+..|- ...|.+++|||++++|++.|..+||+++.+...
T Consensus 203 v~~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 203 VPEG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cCCc-cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9853 2222111111 235779999999999999999999999998743
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=110.45 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=125.7
Q ss_pred cCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCC--------------------------------------ccceEE
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG--------------------------------------RAPTKI 46 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g--------------------------------------k~~t~i 46 (1525)
+..|-||+.++-++..++++. ++..+..+|+..+. .....+
T Consensus 128 ~eFGPY~~~ytrnGrhlllgG-rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHCl 206 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGG-RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCL 206 (545)
T ss_pred cccCCeeeeecCCccEEEecC-CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeeh
Confidence 456889999999999999887 46666555544331 111222
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEe
Q 000424 47 KTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 125 (1525)
Q Consensus 47 k~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWD 125 (1525)
+. ...|..+.|-|-.=+|++++..|.++--|+.+++.+..+. ..+.+. .++-+|-...+-.|...|+|.+|.
T Consensus 207 k~--~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~-----vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 207 KR--HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD-----VMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred hh--cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc-----hhhcCCccceEEEcCCCceEEecC
Confidence 22 2457778888887788999999999999999999998888 667777 778889888888999999999998
Q ss_pred CCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecC
Q 000424 126 VSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 175 (1525)
Q Consensus 126 v~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~ 175 (1525)
-.+..+ ++. +-.|.++|++|+++++|+|++|.+.|..|+|||+|.+..
T Consensus 280 P~skeP-LvK-iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 280 PNSKEP-LVK-ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred CCCcch-HHH-HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 775322 111 337999999999999999999999999999999996654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=111.13 Aligned_cols=192 Identities=11% Similarity=0.134 Sum_probs=129.0
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCc-
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYA- 84 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P-~g~~LaSGs~DgtIrIWDi~t~k- 84 (1525)
++-..++|.-+.-.++++.. ...|.+||.... .....+..+-..-|+++..+- .|+.++.|..||.||+||.+...
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E-~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKE-QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred CCCeeeehhhhCCeEEecCC-eeEEEEEecccc-eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 34467788877777777764 778889986432 222222233445577776653 36899999999999999976542
Q ss_pred --EEEEEe-cCCc--eeecCceeEEEeCCCC-EEEEEeCCCcEEEEeCCCC-CceeeEeecccC---cCeEEEEEcCCCC
Q 000424 85 --VHYTLQ-LDNT--IKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGS---QPITSVAWLPMLR 154 (1525)
Q Consensus 85 --~l~tL~-H~~~--V~~~g~~sVaFsPdg~-~LaSgS~DgtIrVWDv~t~-~~s~i~il~gH~---~~VtsIafsPdg~ 154 (1525)
.+...+ |++. |. .+.+.+.|- .|++||.||.|++||++.. ...... ...|. +.++++..|++.+
T Consensus 1244 ds~v~~~R~h~~~~~Iv-----~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-iv~~~~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIV-----HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-IVAHWEYGSALTALTVHEHAP 1317 (1387)
T ss_pred cccceeecccCCcccce-----eEEeecCCCcceeeeccCCeEEEEecccCcccccce-eeeccccCccceeeeeccCCC
Confidence 455555 8776 88 899988653 5999999999999999962 112211 12332 3589999999999
Q ss_pred EEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEE
Q 000424 155 LLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLL 229 (1525)
Q Consensus 155 lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~ 229 (1525)
.+||||. +.|+||++....... + -+ -+..++ +....+.+++|||-.-++|+.
T Consensus 1318 iiAsGs~-q~ikIy~~~G~~l~~-------~-k~-------n~~F~~-------q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGEQLNI-------I-KY-------NPGFMG-------QRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred eeeecCc-ceEEEEecChhhhcc-------c-cc-------Cccccc-------CcCCCcceeeecchhHhhhhc
Confidence 9999998 999999986221100 0 00 001111 222346889999998888843
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-07 Score=114.79 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=110.7
Q ss_pred EEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE--EEecCCceee
Q 000424 20 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY--TLQLDNTIKL 97 (1525)
Q Consensus 20 ~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~--tL~H~~~V~~ 97 (1525)
++.+|.. -..+.+|...+..++. .+.+ |++.|.++.|+-+|.++++.|+|+++|+|++.+.+... .|.|...|.
T Consensus 147 ~i~~gsv-~~~iivW~~~~dn~p~-~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw- 222 (967)
T KOG0974|consen 147 YIASGSV-FGEIIVWKPHEDNKPI-RLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW- 222 (967)
T ss_pred EEEeccc-cccEEEEeccccCCcc-eecc-cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE-
Confidence 3334432 3445566665433333 4455 99999999999999999999999999999999988776 233999999
Q ss_pred cCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccC-cCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 98 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 98 ~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~-~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.++|+|. .+++++.|.+.++|+.+. ..+ ..+.+|. ..|..++.++.....+|++.|+++++||..
T Consensus 223 ----~~~~~~n--~i~t~gedctcrvW~~~~--~~l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 223 ----ACCFLPN--RIITVGEDCTCRVWGVNG--TQL-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ----EEEeccc--eeEEeccceEEEEEeccc--cee-hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999998 899999999999998773 222 2455664 468899999999999999999999999986
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=102.28 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=129.4
Q ss_pred cCCcEEEEEEcCCCCEEEEEEecc--ceEEEEEeecCCccceEEccC------C--CCCeEEEEEcCC--CCEEEEEECC
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTD------L--KKPIVNLACHPR--LPVLYVAYAD 72 (1525)
Q Consensus 5 ~~~~e~hLA~hP~~p~Vf~s~~~d--~sV~v~dtve~gk~~t~ik~~------H--~~~V~sIaf~P~--g~~LaSGs~D 72 (1525)
.+.+.+++.-+|..|.++...... ..+.+|+.. .+...+.-+.. . .-.++++.|-+. ...||++..-
T Consensus 147 ~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle-~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 147 TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE-QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY 225 (412)
T ss_pred cCCceeeeccCCCCCceEecCchhcccceeeeecc-cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc
Confidence 467899999999999999866666 667788853 33433332221 1 123567889887 5689999999
Q ss_pred CcEEEEEcCCC-cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeE-eecccCcCeEEEEE
Q 000424 73 GLIRAYNIHTY-AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG-IIQVGSQPITSVAW 149 (1525)
Q Consensus 73 gtIrIWDi~t~-k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~-il~gH~~~VtsIaf 149 (1525)
+.+|+||.+.+ +++..|. .+.+++ ++...|+++.|++|..-+.+..+|.++ ....+ .+.+-.+.|++|.-
T Consensus 226 hqvR~YDt~~qRRPV~~fd~~E~~is-----~~~l~p~gn~Iy~gn~~g~l~~FD~r~--~kl~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 226 HQVRLYDTRHQRRPVAQFDFLENPIS-----STGLTPSGNFIYTGNTKGQLAKFDLRG--GKLLGCGLKGITGSIRSIHC 298 (412)
T ss_pred eeEEEecCcccCcceeEeccccCcce-----eeeecCCCcEEEEecccchhheecccC--ceeeccccCCccCCcceEEE
Confidence 99999998765 6888999 888999 999999999999999999999999995 33332 25677889999999
Q ss_pred cCCCCEEEEEECCCCeeEEEeee
Q 000424 150 LPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 150 sPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
||.++++++|+.|..|||+|+.+
T Consensus 299 hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 299 HPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCCceEEeeccceeEEEeeccc
Confidence 99999999999999999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-06 Score=106.47 Aligned_cols=150 Identities=9% Similarity=0.024 Sum_probs=101.9
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEcCCC-cEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTY-AVH 86 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs-~DgtIrIWDi~t~-k~l 86 (1525)
...++|+|++..++++...+..+.++.....+.....+.. |...+.+.+|+|+|+.++.++ .++..+||++... ...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3468999999999888765665554432112233444444 677788999999999765544 6788899986432 222
Q ss_pred EEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 87 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 87 ~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
..+.+.. . +..|+|||++|+.++.++.+ +||+.+...... ...+ ...+++|+|+|++|++++.++.++
T Consensus 329 ~~l~~~~--~-----~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~l--t~~~--~~~~~~~sPdG~~i~~~s~~g~~~ 396 (429)
T PRK01742 329 SLVGGRG--Y-----SAQISADGKTLVMINGDNVV-KQDLTSGSTEVL--SSTF--LDESPSISPNGIMIIYSSTQGLGK 396 (429)
T ss_pred EEecCCC--C-----CccCCCCCCEEEEEcCCCEE-EEECCCCCeEEe--cCCC--CCCCceECCCCCEEEEEEcCCCce
Confidence 2223332 4 67899999999988877654 599885422222 1222 335688999999999999999999
Q ss_pred EEEee
Q 000424 167 VWKTR 171 (1525)
Q Consensus 167 IWDlr 171 (1525)
+|++.
T Consensus 397 ~l~~~ 401 (429)
T PRK01742 397 VLQLV 401 (429)
T ss_pred EEEEE
Confidence 99864
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=101.82 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=119.7
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE--
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV-- 85 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~-- 85 (1525)
.+-.+||.+++..+-++. .|..+++|+.-.... ..... .|.+.|.+++|+|++..|++-+.| ..+|||..++.+
T Consensus 146 ~~k~vaf~~~gs~latgg-~dg~lRv~~~Ps~~t-~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGG-TDGTLRVWEWPSMLT-ILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred cceEEEEcCCCCEeeecc-ccceEEEEecCcchh-hhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 446789999988887776 588888888433222 22222 488999999999999999999999 899999887611
Q ss_pred ------------------------EEEE--e-cCCceee---------------------cCceeEEEeCCCCEEEEEeC
Q 000424 86 ------------------------HYTL--Q-LDNTIKL---------------------LGAGAFAFHPTLEWLFVGDR 117 (1525)
Q Consensus 86 ------------------------l~tL--~-H~~~V~~---------------------~g~~sVaFsPdg~~LaSgS~ 117 (1525)
++.+ . ..+.|++ +++++++.+.||++++.|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 1111 1 1111111 23459999999999999999
Q ss_pred CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 118 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 118 DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
||.|.|++..+... ..-+.+.|...|+.+.|+|+.+++++-|.|.++.|-.+..
T Consensus 302 dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999886311 1123578999999999999999999999999999887763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.8e-07 Score=111.20 Aligned_cols=156 Identities=21% Similarity=0.272 Sum_probs=114.8
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCcc-c------eEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA-P------TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH- 81 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~-~------t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~- 81 (1525)
-.++|+|..|..|+-+...+.| ..+...+... . .....-|.++|+++.++|=...++..+.|-+||||+-.
T Consensus 351 t~~~F~~~~p~~FiVGTe~G~v-~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~ 429 (555)
T KOG1587|consen 351 TSLKFEPTDPNHFIVGTEEGKV-YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV 429 (555)
T ss_pred eeEeeccCCCceEEEEcCCcEE-EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC
Confidence 4689999999998888655544 3333333221 1 11222488999999999988754444449999999987
Q ss_pred CCcEEEEEe-cCCceeecCceeEEEeCCCC-EEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEE
Q 000424 82 TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 82 t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~-~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSg 159 (1525)
...++..+. +.+.|+ +++|||... .++++..||.|-+||+.......+.....+....+.+.|++.|+.|+.|
T Consensus 430 ~~~Pl~~~~~~~~~v~-----~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavG 504 (555)
T KOG1587|consen 430 IASPLLSLDSSPDYVT-----DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVG 504 (555)
T ss_pred CCCcchhhhhccceee-----eeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEe
Confidence 667888888 888899 999999765 5666678999999999853222221222346667789999999999999
Q ss_pred ECCCCeeEEEee
Q 000424 160 CRDGSLQVWKTR 171 (1525)
Q Consensus 160 S~DgtIkIWDlr 171 (1525)
...|++++|++.
T Consensus 505 d~~G~~~~~~l~ 516 (555)
T KOG1587|consen 505 DANGTTHILKLS 516 (555)
T ss_pred cCCCcEEEEEcC
Confidence 999999999986
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-05 Score=94.60 Aligned_cols=112 Identities=16% Similarity=0.230 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------------cEEEEEe-cCCceeecCceeEEEeCCCCEEEEE
Q 000424 52 KPIVNLACHPRLPVLYVAYADGLIRAYNIHTY---------------AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVG 115 (1525)
Q Consensus 52 ~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~---------------k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSg 115 (1525)
....+++|+....++|+|+.||.+|+..+.+. ....+++ |..+|. -+.|+-..+.|-++
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~-----vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVM-----VVTWNENNQKLTTS 89 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEE-----EEEecccccccccc
Confidence 45678999999999999999999999987542 1235677 999999 99999999999888
Q ss_pred eCCCcEEEEeCCCC--CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 116 DRRGTLLAWDVSIE--RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 116 S~DgtIrVWDv~t~--~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
..+|.|.||-+-.+ ...++ -....+.|.+++|..+|..++..-.||.|.+=.+
T Consensus 90 Dt~GlIiVWmlykgsW~EEMi--NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMI--NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred CCCceEEEEeeecccHHHHHh--hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 89999999976542 22333 2344567899999999999999999998866543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0022 Score=85.94 Aligned_cols=223 Identities=9% Similarity=0.067 Sum_probs=129.4
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEee-cCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV-EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtv-e~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k 84 (1525)
.+..+.+.+-++...++++.. .+.+.++-.. +......-+-+.-...|.+++|+||+.+|+....++++-+.+ +++.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~-~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALA-SGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFD 152 (928)
T ss_pred CCcEEEEEeccCCCcEEEEEC-CceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccce
Confidence 345566666677766666663 5666555110 111222222233567899999999999999998898887764 2333
Q ss_pred EEEEEe-cC------Cce-------------------------------------eecCceeEEEeCCCCEEEEEeC---
Q 000424 85 VHYTLQ-LD------NTI-------------------------------------KLLGAGAFAFHPTLEWLFVGDR--- 117 (1525)
Q Consensus 85 ~l~tL~-H~------~~V-------------------------------------~~~g~~sVaFsPdg~~LaSgS~--- 117 (1525)
++.... +. ..| ...+...++|..||.++++.+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 322211 00 000 0013357889999999998773
Q ss_pred -C--CcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccc
Q 000424 118 -R--GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESI 194 (1525)
Q Consensus 118 -D--gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesl 194 (1525)
. +.+||||-+. .+..+.+.-.+--.+++|.|.|.+||+...-..- +|+ .||+.+|...-
T Consensus 233 ~~~~R~iRVy~ReG---~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~--~~V-------------vFfErNGLrhg 294 (928)
T PF04762_consen 233 TGSRRVIRVYSREG---ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR--HDV-------------VFFERNGLRHG 294 (928)
T ss_pred CCceeEEEEECCCc---eEEeccccCCCccCCccCCCCCCEEEEEEEcCCC--cEE-------------EEEecCCcEee
Confidence 2 6899998772 1111111111222478999999999987641100 111 23444432211
Q ss_pred cccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeeccccC
Q 000424 195 DIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARG 262 (1525)
Q Consensus 195 di~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~ 262 (1525)
++.--... . -..+..+.|.++..+.|+++.. .+..|.+..-+|.+.+.++...+
T Consensus 295 eF~l~~~~-~------~~~v~~l~Wn~ds~iLAv~~~~-------~vqLWt~~NYHWYLKqei~~~~~ 348 (928)
T PF04762_consen 295 EFTLRFDP-E------EEKVIELAWNSDSEILAVWLED-------RVQLWTRSNYHWYLKQEIRFSSS 348 (928)
T ss_pred eEecCCCC-C------CceeeEEEECCCCCEEEEEecC-------CceEEEeeCCEEEEEEEEEccCC
Confidence 11100000 0 0257899999999999988744 27788888888888777775444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=103.76 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=119.6
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEEcCCC-----
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR--LPVLYVAYADGLIRAYNIHTY----- 83 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~--g~~LaSGs~DgtIrIWDi~t~----- 83 (1525)
-|+|+.++.++..|+ +|..+.+|+.. .-+....+.++|...|.++.|-|. ..++++|+.|..|+++|+...
T Consensus 55 ~LeWn~dG~lL~SGS-DD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~ 132 (758)
T KOG1310|consen 55 CLEWNADGELLASGS-DDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM 132 (758)
T ss_pred ceeecCCCCEEeecC-CcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence 378999999886665 68888899977 456777888899999999999985 457999999999999998741
Q ss_pred -----cEEEEEe-cCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEeCCCCCceeeE-------eecccC--cCeEEE
Q 000424 84 -----AVHYTLQ-LDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIERPSMIG-------IIQVGS--QPITSV 147 (1525)
Q Consensus 84 -----k~l~tL~-H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWDv~t~~~s~i~-------il~gH~--~~VtsI 147 (1525)
...+.+. |.+.|. -++-.|++ ..+.+++.||+|+-+|++.. ..+.. ...-|. -...|+
T Consensus 133 d~~~~~~~~~~~cht~rVK-----ria~~p~~PhtfwsasEDGtirQyDiREp-h~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 133 DHGMEETTRCWSCHTDRVK-----RIATAPNGPHTFWSASEDGTIRQYDIREP-HVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccCccchhhhhhhhhhhhh-----heecCCCCCceEEEecCCcceeeecccCC-ccCCccccccHHHHHhchhhheeeee
Confidence 3344455 888998 89989988 66789999999999999952 11110 011112 234689
Q ss_pred EEcCCCC-EEEEEECCCCeeEEEeeeec
Q 000424 148 AWLPMLR-LLVTLCRDGSLQVWKTRVII 174 (1525)
Q Consensus 148 afsPdg~-lLaSgS~DgtIkIWDlr~~~ 174 (1525)
..+|..+ +|+.|+.|-..++||.|..+
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~Rr~l 234 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRRRVL 234 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhhhhc
Confidence 9999765 78899999999999987444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=99.09 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=121.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC---CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEe
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT---YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 125 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t---~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWD 125 (1525)
..++|++-+|+++...+|++.....|.||.... .+..++++ |...|+ .|+|.|..+.|++|+.|..-.||.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vt-----gvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVT-----GVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCccee-----EEeecCCCCceeEccCCCCccccc
Confidence 458999999999999999999999999998654 46788999 999999 999999999999999999999998
Q ss_pred CCC---CCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccc
Q 000424 126 VSI---ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ 202 (1525)
Q Consensus 126 v~t---~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~ 202 (1525)
..+ +.+.++ +-.|+...++|.|+|..+.|++||....|.||-+...-+ +.+ +-
T Consensus 84 ~~~~~~Wkptlv--LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------------------WWV----sK 139 (361)
T KOG1523|consen 84 QPSGGTWKPTLV--LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------------------WWV----SK 139 (361)
T ss_pred cCCCCeecccee--EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------------------eeh----hh
Confidence 743 234443 557899999999999999999999999999997642100 100 10
Q ss_pred cCCcceecC-CCeeEEEEecCCCeEEEEecccccCCcccccc
Q 000424 203 QGGEAVYPL-PRVRALEVHPRLNLAVLLFANFTGGDNIKNRA 243 (1525)
Q Consensus 203 ~gG~~vy~l-~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~ 243 (1525)
+- +.|+ ..|.++.|||+.-+.+ .++-|.+.|+
T Consensus 140 hi---kkPirStv~sldWhpnnVLla------aGs~D~k~rV 172 (361)
T KOG1523|consen 140 HI---KKPIRSTVTSLDWHPNNVLLA------AGSTDGKCRV 172 (361)
T ss_pred hh---CCccccceeeeeccCCcceec------ccccCcceeE
Confidence 00 1111 3588999999877776 5666666553
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=102.17 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=86.4
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 000424 55 VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 133 (1525)
Q Consensus 55 ~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~ 133 (1525)
..++|+++|..+++|+.||++|+|+..+...+.... |...|. +++|+|||+.|++-+.| ..+|||+++. ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-----DL~FS~dgk~lasig~d-~~~VW~~~~g--~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-----DLDFSPDGKFLASIGAD-SARVWSVNTG--AA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-----cceeCCCCcEEEEecCC-ceEEEEeccC--ch
Confidence 779999999999999999999999988877777777 999999 99999999999999999 9999999974 11
Q ss_pred eEee--cccCcCeEEEEEcCCC-----CEEEEEECCCCeeEEEeeee
Q 000424 134 IGII--QVGSQPITSVAWLPML-----RLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 134 i~il--~gH~~~VtsIafsPdg-----~lLaSgS~DgtIkIWDlr~~ 173 (1525)
++.. .........+.|+-+. .+++....-+.|+.||+...
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 1111 1223445567787776 34445555668888887643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=98.42 Aligned_cols=156 Identities=13% Similarity=0.183 Sum_probs=113.9
Q ss_pred CCCeEEEEEcC-CCC--EEEEEECCCcEEEEEcCCCc----------EEEEEe-cCCceeecCceeEEEeCCCCEEEEEe
Q 000424 51 KKPIVNLACHP-RLP--VLYVAYADGLIRAYNIHTYA----------VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD 116 (1525)
Q Consensus 51 ~~~V~sIaf~P-~g~--~LaSGs~DgtIrIWDi~t~k----------~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS 116 (1525)
.+.|++..+.- .+. +++.|..+|.+-+||+.++. ...... |..+|. ++.|.+.-..=++|+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl-----sldyas~~~rGisgg 224 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL-----SLDYASSCDRGISGG 224 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce-----eeeechhhcCCcCCC
Confidence 45677777543 233 57889999999999998873 333334 888999 999987555557888
Q ss_pred CCCcEEEEeCCCCCce--eeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccc
Q 000424 117 RRGTLLAWDVSIERPS--MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESI 194 (1525)
Q Consensus 117 ~DgtIrVWDv~t~~~s--~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesl 194 (1525)
.+-.+.+|+++....+ +-..++-.+-.|..+...||++.++|++.|+.||||..|+... +
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p------------------L 286 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP------------------L 286 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc------------------h
Confidence 8888899988742111 1122233355688999999999999999999999999885321 0
Q ss_pred cccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccc
Q 000424 195 DIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAY 245 (1525)
Q Consensus 195 di~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~ 245 (1525)
-+|.++. ..+++++|||..|++| .++.|..+..|+
T Consensus 287 ---AVLkyHs-------agvn~vAfspd~~lmA------aaskD~rISLWk 321 (323)
T KOG0322|consen 287 ---AVLKYHS-------AGVNAVAFSPDCELMA------AASKDARISLWK 321 (323)
T ss_pred ---hhhhhhh-------cceeEEEeCCCCchhh------hccCCceEEeee
Confidence 1333333 3689999999999999 888998888776
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-06 Score=93.73 Aligned_cols=156 Identities=18% Similarity=0.137 Sum_probs=105.0
Q ss_pred ccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeec--CC---ccce--EEccCCC-----CCeEEEEEcCCCCEEEEEEC
Q 000424 4 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE--GG---RAPT--KIKTDLK-----KPIVNLACHPRLPVLYVAYA 71 (1525)
Q Consensus 4 ~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve--~g---k~~t--~ik~~H~-----~~V~sIaf~P~g~~LaSGs~ 71 (1525)
-+..-.+.++|| ...++.+. +..|+-|-..| .. +..+ ++.. |. -.|+++...|..+-++.++.
T Consensus 60 ahdgpiy~~~f~--d~~Lls~g--dG~V~gw~W~E~~es~~~K~lwe~~~P~-~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 60 AHDGPIYYLAFH--DDFLLSGG--DGLVYGWEWNEEEESLATKRLWEVKIPM-QVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred ccCCCeeeeeee--hhheeecc--CceEEEeeehhhhhhccchhhhhhcCcc-ccCcccCCccceeEeccCCCcEEEecC
Confidence 344456778888 44555554 35555444332 21 1111 1111 33 24788999999888777789
Q ss_pred CCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC-CceeeEee------ccc-Cc
Q 000424 72 DGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-RPSMIGII------QVG-SQ 142 (1525)
Q Consensus 72 DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~-~~s~i~il------~gH-~~ 142 (1525)
|+.+.-||+.+++..++++ |.++|. +|.-.....-++||+.||++||||.++. ..+++... ..| ..
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH-----~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVH-----SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceee-----eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence 9999999999999999999 999999 9987566667999999999999999963 12222111 112 23
Q ss_pred CeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 143 PITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 143 ~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
.|.+++-+ ..+++.| ....+.+|++|.
T Consensus 210 wigala~~--edWlvCG-gGp~lslwhLrs 236 (325)
T KOG0649|consen 210 WIGALAVN--EDWLVCG-GGPKLSLWHLRS 236 (325)
T ss_pred eeEEEecc--CceEEec-CCCceeEEeccC
Confidence 45666654 4477665 456899999883
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.8e-06 Score=105.98 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=127.1
Q ss_pred EEEEEEeccceEEEEEeecCC-ccceEEcc-----CC----CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEE
Q 000424 20 VVFFGFHRRMSVTVVGTVEGG-RAPTKIKT-----DL----KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL 89 (1525)
Q Consensus 20 ~Vf~s~~~d~sV~v~dtve~g-k~~t~ik~-----~H----~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL 89 (1525)
-++..++.+..|++|...... +++..+.. ++ .+.-.-++|.....+|+++++-+.|||||.+.-.+...+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 344555678999999775543 22221110 11 112244678777667777777899999999988888877
Q ss_pred e--cCCceeecCceeEEE-eCCCCEEEEEeCCCcEEEEeCCCC-CceeeEeecccCcC--eEEEEEcCCCC-EEEEEECC
Q 000424 90 Q--LDNTIKLLGAGAFAF-HPTLEWLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGSQP--ITSVAWLPMLR-LLVTLCRD 162 (1525)
Q Consensus 90 ~--H~~~V~~~g~~sVaF-sPdg~~LaSgS~DgtIrVWDv~t~-~~s~i~il~gH~~~--VtsIafsPdg~-lLaSgS~D 162 (1525)
. .+..++ ++.= .+.|+.++.|-.||+||+||.+.. ....+.....|+.. |..+++.+.|- .|++||.|
T Consensus 1204 P~~s~t~vT-----aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1204 PYGSSTLVT-----ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred ccCCCccce-----eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 7 445566 4432 234788999999999999999963 34455667789888 99999998665 49999999
Q ss_pred CCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCccccc
Q 000424 163 GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNR 242 (1525)
Q Consensus 163 gtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k 242 (1525)
|.|++||+|.... . ++ +++..- ...|+ .++++..|+....+| +|+- ..++
T Consensus 1279 G~I~~~DlR~~~~--e-----~~--------~~iv~~-~~yGs-------~lTal~VH~hapiiA------sGs~-q~ik 1328 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSK--E-----TF--------LTIVAH-WEYGS-------ALTALTVHEHAPIIA------SGSA-QLIK 1328 (1387)
T ss_pred CeEEEEecccCcc--c-----cc--------ceeeec-cccCc-------cceeeeeccCCCeee------ecCc-ceEE
Confidence 9999999995211 0 11 111100 11111 367899999999888 5554 5555
Q ss_pred ccc
Q 000424 243 AAY 245 (1525)
Q Consensus 243 ~~~ 245 (1525)
+|.
T Consensus 1329 Iy~ 1331 (1387)
T KOG1517|consen 1329 IYS 1331 (1387)
T ss_pred EEe
Confidence 554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=96.94 Aligned_cols=154 Identities=10% Similarity=0.084 Sum_probs=99.0
Q ss_pred CcEEEEEEcCCCCEEEEEEec--cceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEE-ECCC--cEEEEEcC
Q 000424 7 DTEVHLALTPLQPVVFFGFHR--RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YADG--LIRAYNIH 81 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~--d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSG-s~Dg--tIrIWDi~ 81 (1525)
+.....+|+|++..+.+.... +..+.+++. +++. ...+.. +.+.+..++|+|+|+.|+.. +.++ .|.+||+.
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl-~~G~-~~~l~~-~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-ANGA-VRQVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEEC-CCCC-eEEccC-CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 356789999999888765432 334555553 3332 222222 44556678999999977654 4455 48889998
Q ss_pred CCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeC-CCcEEEE--eCCCCCceeeEeecccCcCeEEEEEcCCCCEEEE
Q 000424 82 TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAW--DVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 158 (1525)
Q Consensus 82 t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~-DgtIrVW--Dv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaS 158 (1525)
+++......+...+. ...|+|||++|+..++ ++...|| |..+..... +..+...+.+.+|+|+|++|+.
T Consensus 276 tg~~~~lt~~~~~~~-----~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 276 SGQIRQVTDGRSNNT-----EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVM 347 (429)
T ss_pred CCCEEEccCCCCCcC-----ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE---eecCCCCccCEEECCCCCEEEE
Confidence 887644333545667 8999999999887774 4555666 555322211 1233445667899999999887
Q ss_pred EECCC---CeeEEEee
Q 000424 159 LCRDG---SLQVWKTR 171 (1525)
Q Consensus 159 gS~Dg---tIkIWDlr 171 (1525)
.+.++ .|.+||+.
T Consensus 348 ~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 348 VSSNGGQQHIAKQDLA 363 (429)
T ss_pred EEccCCCceEEEEECC
Confidence 66543 46666653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-07 Score=112.97 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=122.6
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
-|-.+|.-++-+|+.++ +++-+++|. .+...+.-...+ |++.|+.++.+....++++++.|..|++|-+.++.++..
T Consensus 193 Vyca~fDrtg~~Iitgs-dd~lvKiwS-~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv 269 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGS-DDRLVKIWS-METARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV 269 (1113)
T ss_pred eeeeeeccccceEeecC-ccceeeeee-ccchhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEecCCCchHHH
Confidence 45567888899998777 588899999 566666666676 999999999998888999999999999999999999999
Q ss_pred Ee-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC----CceeeEeecccCcCeEEEEEcCCCCEEEEEECCC
Q 000424 89 LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE----RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 89 L~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~----~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dg 163 (1525)
+. |.+.|+ +++|+|.. +.++||++++||++-. .+.... .+ ...-+-++.|...+.-++|++.|+
T Consensus 270 Lrghtgavt-----aiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 270 LRGHTGAVT-----AIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred Hhcccccee-----eeccCccc----cCCCCCceEeccccccccccCCCCCC-cc-cccceeeeeccccccccccccCCc
Confidence 99 999999 99999975 7789999999999821 111110 11 235567788888899999999999
Q ss_pred CeeEEEee
Q 000424 164 SLQVWKTR 171 (1525)
Q Consensus 164 tIkIWDlr 171 (1525)
+-+.|.+.
T Consensus 339 ea~n~e~~ 346 (1113)
T KOG0644|consen 339 EARNHEFE 346 (1113)
T ss_pred ccccchhh
Confidence 99999775
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=101.70 Aligned_cols=187 Identities=20% Similarity=0.311 Sum_probs=131.1
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEEcCCCcEEEE
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP---VLYVAYADGLIRAYNIHTYAVHYT 88 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~---~LaSGs~DgtIrIWDi~t~k~l~t 88 (1525)
-.|++++.++|+... ..|.++.+ ..+.+.+.+.. |..++.++.+.|... ++.+++.||+|++||...+..+++
T Consensus 22 avfSnD~k~l~~~~~--~~V~VyS~-~Tg~~i~~l~~-~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTG--NFVKVYST-ATGECITSLED-HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred cccccCCcEEEEeeC--CEEEEEec-chHhhhhhccc-ccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 457889999988874 45556554 34445555554 999999999998765 577999999999999876655554
Q ss_pred Ee-cCCc---ee----------e---------------------------------------------------------
Q 000424 89 LQ-LDNT---IK----------L--------------------------------------------------------- 97 (1525)
Q Consensus 89 L~-H~~~---V~----------~--------------------------------------------------------- 97 (1525)
+. +... +. .
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence 43 1000 00 0
Q ss_pred -------------------------cC---ceeEEEeCCCCEEEEEeCCCcEEEE-eCCC-CCceeeEeecccCcCeEEE
Q 000424 98 -------------------------LG---AGAFAFHPTLEWLFVGDRRGTLLAW-DVSI-ERPSMIGIIQVGSQPITSV 147 (1525)
Q Consensus 98 -------------------------~g---~~sVaFsPdg~~LaSgS~DgtIrVW-Dv~t-~~~s~i~il~gH~~~VtsI 147 (1525)
.+ ..|+++||.++++++|..||.|.+| |... ....-...+.=|...|+++
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 00 1468899999999999999999999 4441 1111123456788999999
Q ss_pred EEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCeeEEEEecCCCeEE
Q 000424 148 AWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 227 (1525)
Q Consensus 148 afsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlia 227 (1525)
+|+++|.+|.||+..+.+-+|.+.+... .| .| ..+ ..|..+.+.|..++.+
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------qf-LP-------------RLg-------s~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGKK--------QF-LP-------------RLG-------SPILHIVVSPDSDLYS 308 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCCc--------cc-cc-------------ccC-------CeeEEEEEcCCCCeEE
Confidence 9999999999999999999998753221 11 22 222 1467788889999888
Q ss_pred EEec
Q 000424 228 LLFA 231 (1525)
Q Consensus 228 l~F~ 231 (1525)
++..
T Consensus 309 l~~~ 312 (792)
T KOG1963|consen 309 LVLE 312 (792)
T ss_pred EEec
Confidence 7654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-06 Score=91.71 Aligned_cols=108 Identities=13% Similarity=0.168 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCEEEEEE-eccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCc
Q 000424 9 EVHLALTPLQPVVFFGF-HRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD---GLIRAYNIHTYA 84 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~-~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~D---gtIrIWDi~t~k 84 (1525)
...++|+|++..+++.. .....+.+++. + +.....+ +...++.|.|+|+|+++++|+.+ |.|.+||.++.+
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~-~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDV-K-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcC-c-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 57799999988765443 23457778775 2 3333322 45788999999999999998754 669999999998
Q ss_pred EEEEEecCCceeecCceeEEEeCCCCEEEEEeC------CCcEEEEeCC
Q 000424 85 VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR------RGTLLAWDVS 127 (1525)
Q Consensus 85 ~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~------DgtIrVWDv~ 127 (1525)
.+.+++|.. ++ .++|+|||+++++++. |+.++||++.
T Consensus 137 ~i~~~~~~~-~t-----~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 KISTFEHSD-AT-----DVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeeccccCc-EE-----EEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 888887654 57 8999999999999873 8889999987
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-06 Score=105.15 Aligned_cols=116 Identities=18% Similarity=0.284 Sum_probs=98.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEE
Q 000424 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT----YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 122 (1525)
Q Consensus 48 ~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t----~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIr 122 (1525)
..|...+++.++||+++++|+|..||.|.+|.--. ......+. |.+.|+ ++.|+++|.+|+||+..+.+-
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-----~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-----SLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-----eeEEecCCceEeecccceEEE
Confidence 35888899999999999999999999999997322 12345666 899999 999999999999999999999
Q ss_pred EEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 123 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 123 VWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+|.+.+..+++. -.-.++|..+.++||+.+.+....|..|.+-...
T Consensus 277 ~Wq~~T~~kqfL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 277 LWQLETGKKQFL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEeecCCCcccc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 999997544433 2446789999999999999999999999988653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-05 Score=90.28 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=82.9
Q ss_pred EEEEEeccceEEEEEeecCCc-cceEEccCCCCCeEEEEEcCCCCEEEEEECCCc-EEEEEcCCCcEEEEEe---cCCce
Q 000424 21 VFFGFHRRMSVTVVGTVEGGR-APTKIKTDLKKPIVNLACHPRLPVLYVAYADGL-IRAYNIHTYAVHYTLQ---LDNTI 95 (1525)
Q Consensus 21 Vf~s~~~d~sV~v~dtve~gk-~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~Dgt-IrIWDi~t~k~l~tL~---H~~~V 95 (1525)
+.|-+...+.+.+.+....-. ++..+.. |...|.+++.+-+|.++||+|..|| |||||..++..+..++ ....+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 333334456666666533322 4556665 9999999999999999999999998 9999999999999998 34567
Q ss_pred eecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 96 KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 96 ~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
. |++|||+..||+++|+-|||-|+.++.
T Consensus 230 y-----~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 Y-----CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred E-----EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 7 999999999999999999999998774
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=93.94 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=105.6
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccce-----------EEcc-CCCCCeEEEEEcCCCCEEEEEEC-CCc
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT-----------KIKT-DLKKPIVNLACHPRLPVLYVAYA-DGL 74 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t-----------~ik~-~H~~~V~sIaf~P~g~~LaSGs~-Dgt 74 (1525)
----|||-|.....+.-. .+..+.+|.......... .++. +| .+|++++|+++|..+++++. |..
T Consensus 142 nvtclawRPlsaselavg-Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVG-CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred ceeEEEeccCCcceeeee-ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence 344689999766654333 577787776432211111 1111 24 68999999999999988875 678
Q ss_pred EEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC-C-CceeeEeecccCcCeEEEEEcC
Q 000424 75 IRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-E-RPSMIGIIQVGSQPITSVAWLP 151 (1525)
Q Consensus 75 IrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t-~-~~s~i~il~gH~~~VtsIafsP 151 (1525)
|.|||..++..+-... ....+. -+.||||+.+|+++.-|+..++|+... . ....+ -..++|...+|+|
T Consensus 220 i~iWdpdtg~~~pL~~~glgg~s-----lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~----lgsgrvqtacWsp 290 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPKGLGGFS-----LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI----LGSGRVQTACWSP 290 (445)
T ss_pred EEEEcCCCCCcccccccCCCcee-----eEEEcCCCCEEEEecccceeeeehhcccceeccee----ccCCceeeeeecC
Confidence 9999999887765554 567777 899999999999999999999996543 2 11222 2245999999999
Q ss_pred CCCEEEEEECCCCeeEEEee
Q 000424 152 MLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 152 dg~lLaSgS~DgtIkIWDlr 171 (1525)
+|++|+-.+. |+=+++.+.
T Consensus 291 cGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 291 CGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred CCCEEEEEEc-CCceEEEEe
Confidence 9997654432 344556654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7e-06 Score=105.06 Aligned_cols=149 Identities=12% Similarity=0.107 Sum_probs=111.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeE
Q 000424 57 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 135 (1525)
Q Consensus 57 Iaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~ 135 (1525)
+.++++.-++++|+--+.|.+|+....+.-..+. |++.+. ++.|+-||.++++.|+|+++|+|++.+. .....
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF-----~i~~s~dg~~i~s~SdDRsiRlW~i~s~-~~~~~ 212 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIF-----SIVTSLDGRYIASVSDDRSIRLWPIDSR-EVLGC 212 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceE-----EEEEccCCcEEEEEecCcceeeeecccc-cccCc
Confidence 3446666689999999999999976332222455 999999 9999999999999999999999999973 11112
Q ss_pred eecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccCCcceecCCCee
Q 000424 136 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVR 215 (1525)
Q Consensus 136 il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~~V~ 215 (1525)
..-+|+..|..++|+|. .++|++.|.|+++|+.+.... . ...++ ....+|
T Consensus 213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l---------------------~-~y~~h------~g~~iw 262 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL---------------------E-VYDEH------SGKGIW 262 (967)
T ss_pred ccccccceeEEEEeccc--eeEEeccceEEEEEeccccee---------------------h-hhhhh------hhccee
Confidence 34489999999999999 899999999999997542211 0 11111 113578
Q ss_pred EEEEecCCCeEEEEecccccCCcccccccccc
Q 000424 216 ALEVHPRLNLAVLLFANFTGGDNIKNRAAYTR 247 (1525)
Q Consensus 216 ~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~ 247 (1525)
.++.++...... ++++|...|.|...
T Consensus 263 ~~~~~~~~~~~v------T~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 263 KIAVPIGVIIKV------TGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEcCCceEEE------eeccCcchhhhhhh
Confidence 888887655544 88999999988743
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.5e-05 Score=93.79 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=102.4
Q ss_pred CcEEEEEEcCCCCEEEEEEec--cceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEE-EEECCCc--EEEEEcC
Q 000424 7 DTEVHLALTPLQPVVFFGFHR--RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADGL--IRAYNIH 81 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~--d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~La-SGs~Dgt--IrIWDi~ 81 (1525)
......+|+|++..+++.... +..+.+++. +++.. ..+. .+.+.+.+.+|+|+|+.|+ +.+.++. |.+||+.
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl-~~g~~-~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDL-ETGQR-ELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEEC-CCCcE-EEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 356789999999888776543 356667764 33332 2333 3677888999999998764 5566665 7777888
Q ss_pred CCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCC--cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEE
Q 000424 82 TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRG--TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV 157 (1525)
Q Consensus 82 t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~Dg--tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLa 157 (1525)
++... .+. +..... ...|+|||++|+..+ .++ .|.+||..+.....+ ..+...+....|+|+|++|+
T Consensus 279 ~~~~~-~Lt~~~~~~~-----~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l---t~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 279 SGTTT-RLTDSPAIDT-----SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI---SFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCceE-EccCCCCccC-----ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe---ecCCCcccCeEECCCCCEEE
Confidence 77653 444 555566 889999999988776 333 577778775322222 13345567789999999998
Q ss_pred EEECCC---CeeEEEe
Q 000424 158 TLCRDG---SLQVWKT 170 (1525)
Q Consensus 158 SgS~Dg---tIkIWDl 170 (1525)
..+.++ .|.+||+
T Consensus 350 ~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 350 FTKQGGGQFSIGVMKP 365 (435)
T ss_pred EEEcCCCceEEEEEEC
Confidence 876543 3555554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.1e-05 Score=92.07 Aligned_cols=144 Identities=10% Similarity=0.075 Sum_probs=95.8
Q ss_pred EEEEEcCCCCEEEEEEeccc--eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECC-CcEEEE--EcCCCc
Q 000424 10 VHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-GLIRAY--NIHTYA 84 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~--sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~D-gtIrIW--Di~t~k 84 (1525)
..++|+|++..+++....+. .+.+++. +++ ....+.. +...+....|+|+|+.|+..+.+ +..+|| |+.+++
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~-~tg-~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDL-ASG-QIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEEC-CCC-CEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 45799999999988765443 4666663 333 2333333 45567889999999988766654 455555 666665
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCC---CcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~D---gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
. ..+. +..... +..|+|||++|+..+.+ ..|.+||+.+.....+ ... ....+.+|+|||++|+.++
T Consensus 323 ~-~~lt~~~~~~~-----~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L--t~~--~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 323 P-QRITWEGSQNQ-----DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL--TDT--FLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred e-EEeecCCCCcc-----CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe--CCC--CCCCCceECCCCCEEEEEE
Confidence 4 3444 444556 78999999999876633 4588899886432222 122 2234688999999999999
Q ss_pred CCCCee
Q 000424 161 RDGSLQ 166 (1525)
Q Consensus 161 ~DgtIk 166 (1525)
.|+...
T Consensus 393 ~~~~~~ 398 (429)
T PRK03629 393 SQGMGS 398 (429)
T ss_pred cCCCce
Confidence 887643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.2e-05 Score=93.21 Aligned_cols=151 Identities=12% Similarity=0.076 Sum_probs=98.6
Q ss_pred EEEEEEcCCCCEEEEEEecc--ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEE-EEECCC--cEEEEEcCCC
Q 000424 9 EVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADG--LIRAYNIHTY 83 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d--~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~La-SGs~Dg--tIrIWDi~t~ 83 (1525)
....+|+|++..+++..... ..+.+++. .++.. ..+.. +.+...+.+|+|+|+.++ +.+.++ .|.+||+.++
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl-~~g~~-~~l~~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDL-ATGQR-ELVAS-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEEC-CCCCE-EEecc-CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 45678999998887776433 34656664 33322 22322 455566889999998764 555665 5999999888
Q ss_pred cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCCc--EEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEE
Q 000424 84 AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGT--LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 84 k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~Dgt--IrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSg 159 (1525)
+.. .+. +..... ..+|+|||++|+.++ .++. |.++|+.+.....+ ..+.......+|+|+|++|+..
T Consensus 283 ~~~-~lt~~~~~~~-----~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l---t~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 283 QLT-RLTNHFGIDT-----EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL---TFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred CeE-ECccCCCCcc-----ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---ecCCCCccCEEECCCCCEEEEE
Confidence 754 344 554556 789999999988776 4555 55556654322212 1233445578999999999876
Q ss_pred ECCC---CeeEEEee
Q 000424 160 CRDG---SLQVWKTR 171 (1525)
Q Consensus 160 S~Dg---tIkIWDlr 171 (1525)
+.++ .|.+||+.
T Consensus 354 ~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 354 HGSGGQYRIAVMDLS 368 (433)
T ss_pred ECCCCceeEEEEECC
Confidence 6543 57888864
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.1e-06 Score=100.38 Aligned_cols=145 Identities=12% Similarity=0.185 Sum_probs=108.2
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ- 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~- 90 (1525)
|.|=|-. +++++.+...-....| +..|..+-.+.+ -.+.+..+.-+|-...+-+|...|+|.+|+..+.+++..+-
T Consensus 215 LeFLPyH-fLL~~~~~~G~L~Y~D-VS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc 291 (545)
T KOG1272|consen 215 LEFLPYH-FLLVAASEAGFLKYQD-VSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC 291 (545)
T ss_pred hcccchh-heeeecccCCceEEEe-echhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence 4555543 4556665555554444 566666655665 56888899999999999999999999999999888887777
Q ss_pred cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
|.++|+ +|+++++|.|+++++.|+.++|||++... ......+ ..+...+++|..| ++.+|....|.||.
T Consensus 292 H~g~V~-----siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 292 HRGPVS-----SIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred cCCCcc-----eEEECCCCcEEeecccccceeEeeecccc-ccceeec--CCCcccccccccc--ceeeecCCeeeeeh
Confidence 999999 99999999999999999999999999642 2221112 2455677787665 34455566899995
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=7e-05 Score=92.01 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=95.8
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEc--CCCc
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNI--HTYA 84 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-DgtIrIWDi--~t~k 84 (1525)
.....+|+|++..++++...+....++.....+.....+.. |...+.+..|+|+|+.++..+. ++...||.+ .+++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 34578999999999887766665555543222333444433 5566678899999998765554 566777754 4443
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCC---cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg---tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
. ..+. +..... ..+|+|||++|+..+.++ .|.+||+.+.....+ . . .....+.+|+|+++.|+.++
T Consensus 320 ~-~~lt~~g~~~~-----~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l--t-~-~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 320 A-QRVTFTGSYNT-----SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL--T-D-TTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred e-EEEecCCCCcC-----ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc--c-C-CCCccCceECCCCCEEEEEE
Confidence 3 2333 333444 678999999998877544 699999986422222 1 2 22346789999999988887
Q ss_pred CCCC
Q 000424 161 RDGS 164 (1525)
Q Consensus 161 ~Dgt 164 (1525)
.++.
T Consensus 390 ~~~g 393 (427)
T PRK02889 390 QQGG 393 (427)
T ss_pred ecCC
Confidence 6653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.2e-05 Score=86.08 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=79.9
Q ss_pred EECCCcEEEEEcCCCcE--EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCc-EEEEeCCCCCceeeEeec-c-cCc
Q 000424 69 AYADGLIRAYNIHTYAV--HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGT-LLAWDVSIERPSMIGIIQ-V-GSQ 142 (1525)
Q Consensus 69 Gs~DgtIrIWDi~t~k~--l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dgt-IrVWDv~t~~~s~i~il~-g-H~~ 142 (1525)
|-.-|.|+|-|+...+. -..+. |+..|. |++.+-+|..++|+|..|| |||||..+. ..+..+. | ...
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Ia-----cv~Ln~~Gt~vATaStkGTLIRIFdt~~g--~~l~E~RRG~d~A 227 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIA-----CVALNLQGTLVATASTKGTLIRIFDTEDG--TLLQELRRGVDRA 227 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCcee-----EEEEcCCccEEEEeccCcEEEEEEEcCCC--cEeeeeecCCchh
Confidence 55679999999876655 36666 999999 9999999999999998887 689999964 2221121 1 235
Q ss_pred CeEEEEEcCCCCEEEEEECCCCeeEEEeeeec
Q 000424 143 PITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 174 (1525)
Q Consensus 143 ~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~ 174 (1525)
.|.|++|+|+..+|+.+|+-||++|+.++...
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 68999999999999999999999999998543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.5e-05 Score=92.91 Aligned_cols=152 Identities=18% Similarity=0.114 Sum_probs=99.7
Q ss_pred cEEEEEEcCCCCEEEEEEecc--ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEEc--CC
Q 000424 8 TEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADGLIRAYNI--HT 82 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d--~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~La-SGs~DgtIrIWDi--~t 82 (1525)
.....+|+|++..+++....+ ..+.+++. .++.. ..+.. ..+.+.+.+|+|+|+.|+ +.+.|+..+||.+ .+
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl-~~g~~-~~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDL-ATGRR-RVVAN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEEC-CCCCE-EEeec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 455789999999888776443 34666664 33332 23322 445667899999999775 5677888777754 44
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCC--CCCceeeEeecccCcCeEEEEEcCCCCEEEE
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVS--IERPSMIGIIQVGSQPITSVAWLPMLRLLVT 158 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~--t~~~s~i~il~gH~~~VtsIafsPdg~lLaS 158 (1525)
+. ...+. +..... ...|+|||++|+..+ .++...+|.+. +.....+ ..+.......+|+|+|++|+.
T Consensus 274 ~~-~~~lt~~~~~~~-----~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l---t~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 274 SG-LRRLTQSSGIDT-----EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV---TFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred CC-cEECCCCCCCCc-----CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE---ecCCCCcCceEECCCCCEEEE
Confidence 43 44455 555556 789999999988666 45677777654 2211122 122333456889999999988
Q ss_pred EECCC---CeeEEEee
Q 000424 159 LCRDG---SLQVWKTR 171 (1525)
Q Consensus 159 gS~Dg---tIkIWDlr 171 (1525)
.+.++ .|.+||+.
T Consensus 345 ~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 345 ISRVGGAFKLYVQDLA 360 (427)
T ss_pred EEccCCcEEEEEEECC
Confidence 77655 58888864
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-05 Score=88.59 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=107.8
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~ 85 (1525)
|..+||.+.-+.-.++++...+..|.+|+.....+.. ++.. -..++.++.|+|+|+ +|.+...|-.|.+|++.+.++
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c-kIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC-KIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-Eecc-CCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 3457889999999999999999889899865543333 2332 467899999999997 466777899999999988766
Q ss_pred EEEEecCCceeecCceeEEEeCCCCEEEEEeC------------------------------------CCcEEEEeCCCC
Q 000424 86 HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR------------------------------------RGTLLAWDVSIE 129 (1525)
Q Consensus 86 l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~------------------------------------DgtIrVWDv~t~ 129 (1525)
...-.....+. .++|+|||++.+..++ +..+-|||.--.
T Consensus 127 ~~~~~pK~~~k-----g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 127 YLLPHPKTNVK-----GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred EEecccccCce-----eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence 54333344556 7899999998776652 233455654321
Q ss_pred CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 130 RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 130 ~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
..... . ...-.+..++|+|.+++|+.||.|+.+||-+
T Consensus 202 ykv~a--Y-e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 202 YKVYA--Y-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred heeee--e-eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 11111 1 1134678899999999999999999888754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=93.68 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=99.0
Q ss_pred EEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-c
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L 91 (1525)
Q Consensus 13 A~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H 91 (1525)
.|+|++.-++.+. .|.-|++|....+-+.... +...+|+|++|.|+...++-+.. +.+.|=.+.-...+-..+ |
T Consensus 111 RW~~dGtgLlt~G-EDG~iKiWSrsGMLRStl~---Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAH 185 (737)
T KOG1524|consen 111 RWSPDGAGLLTAG-EDGVIKIWSRSGMLRSTVV---QNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAH 185 (737)
T ss_pred ccCCCCceeeeec-CCceEEEEeccchHHHHHh---hcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEecc
Confidence 4788888876665 6888999886443332221 35689999999999876555433 445565565554444555 9
Q ss_pred CCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 92 DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 92 ~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
++-|. +++|++..+.+++|+.|-..+|||... ..+. ....|..+|++++|.|+ ..++.+|
T Consensus 186 DGiiL-----~~~W~~~s~lI~sgGED~kfKvWD~~G--~~Lf-~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 186 DGLVL-----SLSWSTQSNIIASGGEDFRFKIWDAQG--ANLF-TSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred CcEEE-----EeecCccccceeecCCceeEEeecccC--cccc-cCChhccceeeeeeccc-cceeeee
Confidence 99999 999999999999999999999999883 2111 23479999999999999 6666665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.7e-05 Score=90.85 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=95.9
Q ss_pred EEEEEcCCCCEEEEEEeccc--eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CCc--EEEEEcCCCc
Q 000424 10 VHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGL--IRAYNIHTYA 84 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~--sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-Dgt--IrIWDi~t~k 84 (1525)
...+|+|++..++++...+. .+.+++. +++. ...+.. |.......+|+|+++.++.++. ++. |.++|+.+++
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~-~~g~-~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDL-GSRQ-LTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEEC-CCCC-eEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 46799999998887765544 4666664 3322 333333 5555678899999998777664 444 6666776665
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCC---cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg---tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
.. .+. +..... ..+|+|||++|+..+.++ .|.+||..+.....+ .+.......+|+|+|++++..+
T Consensus 328 ~~-~lt~~g~~~~-----~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L----t~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 328 AE-RLTFQGNYNA-----RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL----TPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred eE-EeecCCCCcc-----CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC----CCCCCCCCceECCCCCEEEEEE
Confidence 43 333 444555 789999999998766432 689999875432322 2233455689999999887776
Q ss_pred CC-C--CeeEEEe
Q 000424 161 RD-G--SLQVWKT 170 (1525)
Q Consensus 161 ~D-g--tIkIWDl 170 (1525)
.+ + .+.+||+
T Consensus 398 ~~~g~~~L~~~~~ 410 (433)
T PRK04922 398 REGGRGVLAAVST 410 (433)
T ss_pred ecCCceEEEEEEC
Confidence 54 3 3444544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.5e-05 Score=86.89 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE--EEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCC
Q 000424 54 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY--TLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIE 129 (1525)
Q Consensus 54 V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~--tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~ 129 (1525)
--++.|++.+.-++++..+|.+.+-+........ +.+ |+-... ...|+- +.+.+++||+|+.+..||.+..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~W-----ta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAW-----TAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeee-----eeecccCCCceEEecCCCceEEEEEecCC
Confidence 3567899988889999999999866655554443 566 887777 788876 4578899999999999999943
Q ss_pred Cceee-EeecccCcCeEEEEEcC-CCCEEEEEECCCCeeEEEeeeecC
Q 000424 130 RPSMI-GIIQVGSQPITSVAWLP-MLRLLVTLCRDGSLQVWKTRVIIN 175 (1525)
Q Consensus 130 ~~s~i-~il~gH~~~VtsIafsP-dg~lLaSgS~DgtIkIWDlr~~~~ 175 (1525)
. +++ .-.+.|...|.+|.=+| ...+++|||-|..|++||.|.+..
T Consensus 199 ~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 199 K-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred c-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 2 222 22346888999998876 567999999999999999996554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=88.26 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=101.6
Q ss_pred EEEEEEcCCCCEEEEEEecc--ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEE-EEECCC--cEEEEEcCCC
Q 000424 9 EVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADG--LIRAYNIHTY 83 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d--~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~La-SGs~Dg--tIrIWDi~t~ 83 (1525)
....+|+|++..++++.... ..+.+++. +.+.. ..+.. +.+.+.+++|+|+++.|+ +.+.++ .|.+||+.++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~-~~g~~-~~~~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDL-ATGQR-EKVAS-FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEEC-CCCCE-EEeec-CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence 56678999999988876543 35666664 33322 22333 566778899999998765 444444 5888898877
Q ss_pred cEEEEEecCCceeecCceeEEEeCCCCEEEEEeC-CC--cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 84 AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RG--TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 84 k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~-Dg--tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
.......+..... ...|+|||++|+.++. ++ .|.+||..+.... .+..+...+....|+|++++++.++
T Consensus 269 ~~~~l~~~~~~~~-----~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~---~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 269 QLTRLTNGPGIDT-----EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR---RLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CEEECCCCCCCCC-----CEEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecCCCCccCeEECCCCCEEEEEE
Confidence 5433323555555 7899999999887663 34 5677777643211 1224556677899999999999888
Q ss_pred CCC---CeeEEEee
Q 000424 161 RDG---SLQVWKTR 171 (1525)
Q Consensus 161 ~Dg---tIkIWDlr 171 (1525)
.++ .|.+||+.
T Consensus 341 ~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 341 REGGGFNIAVMDLD 354 (417)
T ss_pred ccCCceEEEEEeCC
Confidence 775 56677654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.055 Score=72.92 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=97.6
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEE--EeecCCccce-EEcc------CCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVV--GTVEGGRAPT-KIKT------DLKKPIVNLACHPRLPVLYVAYADGLIRAY 78 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~--dtve~gk~~t-~ik~------~H~~~V~sIaf~P~g~~LaSGs~DgtIrIW 78 (1525)
.....+|.+....+++.......-..+ +......... .... .....|.++.+-++...++.+..+|.|-+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 445566777777777776644431111 1111111111 1111 134679999999999988999999999998
Q ss_pred ----EcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC----CC---------Cceee-------
Q 000424 79 ----NIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS----IE---------RPSMI------- 134 (1525)
Q Consensus 79 ----Di~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~----t~---------~~s~i------- 134 (1525)
|..+...-..-.-+..|. +.+||||+..++....++++.+-+.. .+ ....+
T Consensus 103 ~~~~~~~~~~~E~VG~vd~GI~-----a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDEIEIVGSVDSGIL-----AASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCceeEEEEEEcCcEE-----EEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 544433222222567788 99999999999999988888766432 00 00000
Q ss_pred --------------------------EeecccCcCeEEEEEcCCCCEEEEEEC---C---CCeeEEEee
Q 000424 135 --------------------------GIIQVGSQPITSVAWLPMLRLLVTLCR---D---GSLQVWKTR 171 (1525)
Q Consensus 135 --------------------------~il~gH~~~VtsIafsPdg~lLaSgS~---D---gtIkIWDlr 171 (1525)
+.+. +.+.-..|+|..||.|||..+. + ..+|||+-.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re 245 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE 245 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC
Confidence 0011 2234457999999999998875 3 368888754
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.3e-05 Score=92.31 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=102.4
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCc--cceEEccCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEEcCCCcEE
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHPRLP---VLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk--~~t~ik~~H~~~V~sIaf~P~g~---~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
...||.+..+.++... +...+++..+..+ ....... ....-+++.|-.... ..-.+++++.+.+|+...+.+.
T Consensus 68 ~~~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 3456777777777653 4443444444332 2222211 222333344433333 3334556677777877666665
Q ss_pred EEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 87 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 87 ~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
-.+-|..-+. .|+|+||+++|+++..|..|||=.+.. ...+-+..-||...|..++.-++.. |+|+|.|++|+
T Consensus 146 ~~lGhvSml~-----dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr 218 (390)
T KOG3914|consen 146 PILGHVSMLL-----DVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhhhh-----eeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCce-eeecCCCCcEE
Confidence 5555988899 999999999999999999999976662 1222234458999999999987754 88999999999
Q ss_pred EEEeeeecC
Q 000424 167 VWKTRVIIN 175 (1525)
Q Consensus 167 IWDlr~~~~ 175 (1525)
+||++....
T Consensus 219 ~Wd~~sgk~ 227 (390)
T KOG3914|consen 219 LWDITSGKL 227 (390)
T ss_pred EEecccCCc
Confidence 999985444
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=94.00 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=108.1
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCcc---ce-EEccC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc-
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA---PT-KIKTD-LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA- 84 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~---~t-~ik~~-H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k- 84 (1525)
-+|+++...-+|+++++|++|++|+..+.... .. ..... -..++..+...+.+..+|+++.||.|++.++....
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 67888888666778889999999998543211 11 11110 35789999999999999999999999999987631
Q ss_pred ------EEEEEe-cC-CceeecCceeEEEeC-CCC-EEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC
Q 000424 85 ------VHYTLQ-LD-NTIKLLGAGAFAFHP-TLE-WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 154 (1525)
Q Consensus 85 ------~l~tL~-H~-~~V~~~g~~sVaFsP-dg~-~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~ 154 (1525)
+.+..+ +. +.+. ..-+|.. ++. .++.+..-+.|-.||+++...-..-..+-..+.|++++.+|.+.
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv----~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~ 1208 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVV----SMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN 1208 (1431)
T ss_pred ccceeeeeecccccCCCceE----EeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCce
Confidence 222222 22 2222 0333433 334 56667788889999999631111100122346899999999999
Q ss_pred EEEEEECCCCeeEEEeee
Q 000424 155 LLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 155 lLaSgS~DgtIkIWDlr~ 172 (1525)
++++|+..|.+-+||+|.
T Consensus 1209 WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1209 WLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred EEEEecCCceEEEEEeec
Confidence 999999999999999994
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=106.01 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=117.2
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ- 90 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~- 90 (1525)
+.-||..|+-++|+ .+.++..|....+ ..+...+..-...|+.+.|+..|+-+..+..||.+.+|.+. .++....+
T Consensus 2214 ~~sHp~~~~Yltgs-~dgsv~~~~w~~~-~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGS-QDGSVRMFEWGHG-QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred ecCCCCCceEEecC-CCceEEEEeccCC-CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc
Confidence 45689999877666 5888887764332 33333333334788889999999999999999999999886 56666777
Q ss_pred cCCceeecCceeEEEeCCCCEEEEEe---CCCcEEEEeCCCC-CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGD---RRGTLLAWDVSIE-RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg~~LaSgS---~DgtIrVWDv~t~-~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
|+.... .+.|-. ..+++++ +++.+.+||.... ...++ ...|.+.++++++-|...+|+||+.+|.|+
T Consensus 2291 hnk~~~-----Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2291 HNKALS-----DFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV--HTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred CCcccc-----ceeeee--hhhhccccCCCCCcccchhcccCccccee--eeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 998888 888876 5566654 7899999998753 34444 378999999999999999999999999999
Q ss_pred EEEeee
Q 000424 167 VWKTRV 172 (1525)
Q Consensus 167 IWDlr~ 172 (1525)
+||+|.
T Consensus 2362 l~D~rq 2367 (2439)
T KOG1064|consen 2362 LFDIRQ 2367 (2439)
T ss_pred EeehHH
Confidence 999983
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00022 Score=86.57 Aligned_cols=139 Identities=14% Similarity=0.235 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeC-----------CCcEE
Q 000424 54 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-----------RGTLL 122 (1525)
Q Consensus 54 V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~-----------DgtIr 122 (1525)
-+-+.|+|.|.+|+|-..-| |.+|--.+...++.|-|.+ |. .+.|||..+||++-|. -..++
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq-----~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQ-----FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ce-----eeecCCccceEEEecCCccccCcccCCCceEE
Confidence 35589999999999988766 8899766666666666655 56 7999999999998652 25799
Q ss_pred EEeCCCC--CceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccc
Q 000424 123 AWDVSIE--RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRIL 200 (1525)
Q Consensus 123 VWDv~t~--~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iL 200 (1525)
|||+.++ .+.+.. .......-.-+.||.|++++|--.. .+|.|++...... +|
T Consensus 286 IWDI~tG~lkrsF~~-~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l------------------ld----- 340 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPV-IKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML------------------LD----- 340 (698)
T ss_pred EEEccccchhcceec-cCCCccccceEEeccCCceeEEecc-ceEEEEecCceee------------------ec-----
Confidence 9999985 223321 1121111124789999999987765 4788888642211 01
Q ss_pred cccCCcceecCCCeeEEEEecCCCeEEEE
Q 000424 201 SQQGGEAVYPLPRVRALEVHPRLNLAVLL 229 (1525)
Q Consensus 201 s~~gG~~vy~l~~V~~v~~HP~~Nlial~ 229 (1525)
+ +....++|+.++|.|+.|++|-.
T Consensus 341 ----~-Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 341 ----K-KSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred ----c-cccCCccccCcccCCCcceEEEE
Confidence 0 11223578999999999999844
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00015 Score=89.11 Aligned_cols=141 Identities=8% Similarity=0.089 Sum_probs=93.9
Q ss_pred EEEEEEcCCCCEEEEEEeccce--EEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCC
Q 000424 9 EVHLALTPLQPVVFFGFHRRMS--VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAYNIHTY 83 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~s--V~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-Dg--tIrIWDi~t~ 83 (1525)
....+|+|++..++++...+.. +.+++. +++ ....+.. |.......+|+|+|+.++..+. ++ .|.+||+.++
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~-~~~-~~~~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDL-RSG-TTTRLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEEC-CCC-ceEEccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 3467899999988877765544 444453 232 3333333 6666778999999998776664 33 5888888766
Q ss_pred cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCC---CcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEE
Q 000424 84 AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 84 k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~D---gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSg 159 (1525)
+.. .+. +...+. ...|+|||++|+..+.+ ..|.+||..+.....+ . +...+.+.+|+|||+.|+..
T Consensus 325 ~~~-~lt~~~~~~~-----~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l--t--~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 325 NPR-RISFGGGRYS-----TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL--T--SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred CeE-EeecCCCccc-----CeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec--c--CCCCCCCCeECCCCCEEEEE
Confidence 543 444 555567 78999999999877643 3677888764322222 1 22356789999999988766
Q ss_pred ECC
Q 000424 160 CRD 162 (1525)
Q Consensus 160 S~D 162 (1525)
+.+
T Consensus 395 ~~~ 397 (435)
T PRK05137 395 RQT 397 (435)
T ss_pred Ecc
Confidence 553
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=90.25 Aligned_cols=134 Identities=10% Similarity=0.147 Sum_probs=105.6
Q ss_pred ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeC
Q 000424 29 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHP 107 (1525)
Q Consensus 29 ~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsP 107 (1525)
.+|.++....+...-+...+.|.++|.++.++.+-..|.|++.|+.+..|+.+....+...+ ....+. +++.+|
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~-----sl~is~ 154 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS-----SLCISP 154 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc-----eEEEcC
Confidence 34444443333322233335699999999999999999999999999999999999888888 777788 999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC-----CCEEEEE-ECCCCeeEEEee
Q 000424 108 TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-----LRLLVTL-CRDGSLQVWKTR 171 (1525)
Q Consensus 108 dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd-----g~lLaSg-S~DgtIkIWDlr 171 (1525)
||..++++| ++|++||+++ ..++..+.||.++|++++|--+ |.++.++ ..+.-+.+|-++
T Consensus 155 D~~~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCCEEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999998887 5899999994 6666778999999999999876 6666554 445578888765
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-05 Score=92.13 Aligned_cols=121 Identities=13% Similarity=0.083 Sum_probs=98.9
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe--cCCceeecCceeEEEeC--CCCEEEEEeCCCc
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHP--TLEWLFVGDRRGT 120 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--H~~~V~~~g~~sVaFsP--dg~~LaSgS~Dgt 120 (1525)
++.. |.+-|..|.|+..|..+++|++|..|-+||....++...+. |...|. --.|-| +...+++++.||.
T Consensus 137 kL~~-H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~Nvf-----QaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 137 KLNK-HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVF-----QAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred cccC-CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchh-----hhhccCCCCCcCceeccccCc
Confidence 4444 99999999999999999999999999999999999988888 998888 778887 3467999999999
Q ss_pred EEEEeCCCC-CceeeEeecccCcCeEEEEEcCCCC-EEEEEECCCCeeEEEee
Q 000424 121 LLAWDVSIE-RPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 121 IrVWDv~t~-~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~DgtIkIWDlr 171 (1525)
|++=.+... ...-...+..|..+|+-++.-|+.+ -|.||+.|+.+.-.|+|
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 998654421 0110112347889999999999765 58899999999999998
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00025 Score=85.91 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=96.8
Q ss_pred EEEEEEcCCCCEEEEEEeccc--eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCC
Q 000424 9 EVHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAYNIHTY 83 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~--sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-Dg--tIrIWDi~t~ 83 (1525)
....+|+|++..++++...+. .+.+++. +++ ....+.. |.......+|+|+++.|+..+. ++ .|.+||+.++
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~-~~~-~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDL-DGK-QLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEEC-CCC-CEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 345789999988887765443 3545553 222 2333333 5555667899999998766554 33 5777888776
Q ss_pred cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCC---cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEE
Q 000424 84 AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 84 k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg---tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSg 159 (1525)
+.. .+. +...+. .+.|+|+|++++.++.++ .|.+||+.+.....+ ..+ ......+|+|++++|+..
T Consensus 313 ~~~-~l~~~~~~~~-----~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l---~~~-~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 313 EVR-RLTFRGGYNA-----SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVL---TDT-GLDESPSFAPNGRMILYA 382 (417)
T ss_pred CEE-EeecCCCCcc-----CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEc---cCC-CCCCCceECCCCCEEEEE
Confidence 643 444 666667 889999999999988765 788889885322222 122 234567899999988888
Q ss_pred ECCCCeeEE
Q 000424 160 CRDGSLQVW 168 (1525)
Q Consensus 160 S~DgtIkIW 168 (1525)
+.++....|
T Consensus 383 ~~~~~~~~l 391 (417)
T TIGR02800 383 TTRGGRGVL 391 (417)
T ss_pred EeCCCcEEE
Confidence 776644433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.5e-05 Score=87.70 Aligned_cols=99 Identities=22% Similarity=0.402 Sum_probs=67.9
Q ss_pred eEEEeCCCCE-EEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC-CCEEEEEECCCCeeEEEeeeecC--CC
Q 000424 102 AFAFHPTLEW-LFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRVIIN--PN 177 (1525)
Q Consensus 102 sVaFsPdg~~-LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd-g~lLaSgS~DgtIkIWDlr~~~~--p~ 177 (1525)
+++-||..+. +++|++||.+-+||++.. ...+..+.+|...++.+-|||. +..|++||+||++..||..+... .+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~ 262 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISN 262 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecC
Confidence 8888886554 556669999999999952 2233457799999999999995 56899999999999999883221 11
Q ss_pred CCCCccccccCCCccc-cccccccc
Q 000424 178 RPPMQANFFEPASIES-IDIPRILS 201 (1525)
Q Consensus 178 ~~~~~a~~f~p~~Ies-ldi~~iLs 201 (1525)
.......+++.+.+.+ +++..++.
T Consensus 263 ~~s~~s~WLsgD~v~s~i~i~~ll~ 287 (319)
T KOG4714|consen 263 QASVISSWLSGDPVKSRIEITSLLP 287 (319)
T ss_pred ccccccccccCCcccceEeeecccc
Confidence 1222333444444544 45554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.004 Score=77.48 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=104.8
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE-EEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH-YTL 89 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l-~tL 89 (1525)
.+.|...+.. ++++..+.-|.+|....+.+....+....+..|.++.|+-+|..++....||.|.+=.+...+.. +.+
T Consensus 76 vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 76 VVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred EEEecccccc-ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc
Confidence 4455554443 46777777788899888888777777656778999999999999999999999887766544322 112
Q ss_pred ecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC-----Ccee----eEeecccCcCeEEEEEc--------CC
Q 000424 90 QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-----RPSM----IGIIQVGSQPITSVAWL--------PM 152 (1525)
Q Consensus 90 ~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~-----~~s~----i~il~gH~~~VtsIafs--------Pd 152 (1525)
+ ..-.. .+.|++|.+.++-+-..|.+.++|.+.. ...+ .+.+......|..+.|. |+
T Consensus 155 k-g~~l~-----hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd 228 (1189)
T KOG2041|consen 155 K-GQLLA-----HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD 228 (1189)
T ss_pred c-hhecc-----ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence 2 11233 6789999988888888899999998752 1111 12233233345666663 47
Q ss_pred CCEEEEEECCCCeeEEE
Q 000424 153 LRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 153 g~lLaSgS~DgtIkIWD 169 (1525)
.+.|+.|-..|.++|-.
T Consensus 229 rP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMR 245 (1189)
T ss_pred CCEEEEEEcCceehhhh
Confidence 88899888888777653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=87.76 Aligned_cols=127 Identities=18% Similarity=0.304 Sum_probs=98.2
Q ss_pred ecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe---c----CC-----ceeecCceeEE
Q 000424 37 VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ---L----DN-----TIKLLGAGAFA 104 (1525)
Q Consensus 37 ve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~---H----~~-----~V~~~g~~sVa 104 (1525)
.+.|+-...+.. ..+.+++|..++-..+|++|..||.|..||.++...+.++. + .. .|+ ++.
T Consensus 162 LEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-----al~ 235 (703)
T KOG2321|consen 162 LEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-----ALK 235 (703)
T ss_pred cccccccccccc-ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-----EEE
Confidence 455655555555 45889999999999999999999999999999887777776 1 11 267 999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC--CCEEEEEECCCCeeEEEee
Q 000424 105 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM--LRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 105 FsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd--g~lLaSgS~DgtIkIWDlr 171 (1525)
|+.+|-.+++|..+|.|.|||+++..+.++. -.+...+|..+.|.+. ++.++|+ +...++|||-.
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDEC 302 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEec-chHHhhhcccc
Confidence 9999999999999999999999975444442 1233567889999775 5667665 35689999964
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-05 Score=88.71 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=106.2
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeE
Q 000424 57 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIG 135 (1525)
Q Consensus 57 Iaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~ 135 (1525)
..|+|+|+++|+++.- .+-|-|..+.+.++.+.--+.|. .+.|..|.-+++++- .|+.|.+|++.. +....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~-----yieW~ads~~ilC~~yk~~~vqvwsl~Q--pew~c 85 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIV-----YIEWKADSCHILCVAYKDPKVQVWSLVQ--PEWYC 85 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhh-----heeeeccceeeeeeeeccceEEEEEeec--ceeEE
Confidence 5899999999998754 66677777666554444335566 789999998888776 889999999984 43333
Q ss_pred eecccCcCeEEEEEcCCCCEEE-EEECCCCeeEEEeeee----cCCCCCCCccccccCCCcc--------cccccccccc
Q 000424 136 IIQVGSQPITSVAWLPMLRLLV-TLCRDGSLQVWKTRVI----INPNRPPMQANFFEPASIE--------SIDIPRILSQ 202 (1525)
Q Consensus 136 il~gH~~~VtsIafsPdg~lLa-SgS~DgtIkIWDlr~~----~~p~~~~~~a~~f~p~~Ie--------sldi~~iLs~ 202 (1525)
.++.....+.+++|+|||+.|. +.+-|-.|.+|.+.+. +...+.....-.|.+++.. +.|.-.+.+.
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 3556788999999999997655 5555889999999732 1112223333334554311 1111111110
Q ss_pred c----CCcceecCCCeeEEEEecCCCeEEEE
Q 000424 203 Q----GGEAVYPLPRVRALEVHPRLNLAVLL 229 (1525)
Q Consensus 203 ~----gG~~vy~l~~V~~v~~HP~~Nlial~ 229 (1525)
. -++...+-...+.++|.|++|.+++.
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVw 196 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVW 196 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence 0 01111122346789999999999854
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00062 Score=82.49 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=95.7
Q ss_pred CEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeec
Q 000424 19 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL 98 (1525)
Q Consensus 19 p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~ 98 (1525)
.++++....+.++.+++. +..+....+.. ....-..+.|+|+++++++++.|+.|.++|+.+.+.+.++.......
T Consensus 6 ~l~~V~~~~~~~v~viD~-~t~~~~~~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-- 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG-ATNKVVARIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-- 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEET-TT-SEEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE--
T ss_pred cEEEEEecCCCEEEEEEC-CCCeEEEEEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc--
Confidence 455667777888988884 34444555555 22334567899999999999999999999999999999999555567
Q ss_pred CceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeEeecc-------cCcCeEEEEEcCCCCEEEEEECC-CCeeEEE
Q 000424 99 GAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQV-------GSQPITSVAWLPMLRLLVTLCRD-GSLQVWK 169 (1525)
Q Consensus 99 g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~il~g-------H~~~VtsIafsPdg~lLaSgS~D-gtIkIWD 169 (1525)
.+++++||+++++++ .++++.|+|.++. ..+..... ....+..|..+|..+.++..-.| +.|.+-|
T Consensus 82 ---~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 82 ---GIAVSPDGKYVYVANYEPGTVSVIDAETL--EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp ---EEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred ---eEEEcCCCCEEEEEecCCCceeEeccccc--cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 899999999999887 8999999999863 22211111 23567888889999977766665 4443334
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00049 Score=84.08 Aligned_cols=150 Identities=14% Similarity=0.301 Sum_probs=101.0
Q ss_pred cEEEEEEcCCCCEEEEEEec--cc---------eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEE--EECCCc
Q 000424 8 TEVHLALTPLQPVVFFGFHR--RM---------SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV--AYADGL 74 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~--d~---------sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaS--Gs~Dgt 74 (1525)
.-+.+.|.+.+.-+++-... |. ++.++++ ++......+. -.+||-++.|+|+++-|++ |-.-.+
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t-~g~s~~V~L~--k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT-QGESVSVPLL--KEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe-cCceEEEecC--CCCCceEEEECCCCCEEEEEEecccce
Confidence 34566777765554443322 22 2234443 2323333332 4799999999999987765 445678
Q ss_pred EEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEe---CCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcC
Q 000424 75 IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD---RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 151 (1525)
Q Consensus 75 IrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS---~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP 151 (1525)
+.|+|++ +.+++.| .+++.+ ++-|+|.|++|+.+| .-|.+-|||+.+ ...++.+.+ ..-+-+.|+|
T Consensus 296 vtifnlr-~~~v~df-~egpRN-----~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a--~~tt~~eW~P 364 (566)
T KOG2315|consen 296 VTIFNLR-GKPVFDF-PEGPRN-----TAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKA--ANTTVFEWSP 364 (566)
T ss_pred EEEEcCC-CCEeEeC-CCCCcc-----ceEECCCCCEEEEeecCCCCCceEEEeccc--hhhcccccc--CCceEEEEcC
Confidence 9999886 3444333 566777 899999999999887 568899999995 333322322 2335689999
Q ss_pred CCCEEEEEE------CCCCeeEEEee
Q 000424 152 MLRLLVTLC------RDGSLQVWKTR 171 (1525)
Q Consensus 152 dg~lLaSgS------~DgtIkIWDlr 171 (1525)
||.+|+|++ .|..++||+..
T Consensus 365 dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEec
Confidence 999999886 47899999986
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.9e-05 Score=62.00 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=33.7
Q ss_pred eEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 134 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 134 i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
+..+.+|...|++++|+|++.+|+|||.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 456789999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00038 Score=84.90 Aligned_cols=109 Identities=13% Similarity=0.190 Sum_probs=82.7
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 000424 56 NLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 133 (1525)
Q Consensus 56 sIaf~P-~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~ 133 (1525)
.+++|. .-.+++.|+. ..|.=+++..|.-+..|. ....++ +|..++....|++|+.||.|-.||.++ ++.
T Consensus 138 Dm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN-----~v~in~~hgLla~Gt~~g~VEfwDpR~--ksr 209 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELN-----VVSINEEHGLLACGTEDGVVEFWDPRD--KSR 209 (703)
T ss_pred cccccCCCccEEEeecC-cceEEEEccccccccccccccccce-----eeeecCccceEEecccCceEEEecchh--hhh
Confidence 344442 2334444444 446666888998888888 668899 999999999999999999999999995 222
Q ss_pred eEee------cccCc-----CeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 134 IGII------QVGSQ-----PITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 134 i~il------~gH~~-----~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
++.+ ..|.. .|+++.|+.+|-.++.|+.+|.|.|+|+|.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 2222 22333 399999999999999999999999999984
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00068 Score=83.07 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=94.9
Q ss_pred cEEEEEEcCCCCEEEEEEecc--ceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEE-EEECCC--cEEEEEcCC
Q 000424 8 TEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADG--LIRAYNIHT 82 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d--~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~La-SGs~Dg--tIrIWDi~t 82 (1525)
.....+|+|++..+++....+ ..+.+++. +++.. ..+.. ..+.+...+|+|+|+.|+ +.+.++ .|.+||+.+
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l-~~g~~-~~l~~-~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNL-DTGRR-EQITN-FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEEC-CCCCE-EEccC-CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 446789999999887765443 34555553 33322 22222 345566789999999776 455555 578889988
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCC--cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEE
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRG--TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 158 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~Dg--tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaS 158 (1525)
++.. .+. +..... ...|+|||+.|+..+ .++ .|.+||+.+.....+ . .........+|+|++++|+.
T Consensus 277 ~~~~-~lt~~~~~~~-----~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l--t-~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 277 RQLS-RVTNHPAIDT-----EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV--T-FVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred CCeE-EcccCCCCcC-----CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--e-cCCCCccceEECCCCCEEEE
Confidence 7654 344 555555 789999999887666 344 566667764322211 1 11223346789999999987
Q ss_pred EECC-C--CeeEEEee
Q 000424 159 LCRD-G--SLQVWKTR 171 (1525)
Q Consensus 159 gS~D-g--tIkIWDlr 171 (1525)
.+.+ + .|.+||+.
T Consensus 348 ~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQ 363 (430)
T ss_pred EEccCCceEEEEEECC
Confidence 7653 3 35555543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.5e-05 Score=95.34 Aligned_cols=157 Identities=11% Similarity=0.279 Sum_probs=116.1
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecC-CccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC-c
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG-GRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTY-A 84 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~-gk~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~-k 84 (1525)
.++-...||..|+=.++.+....+ +|+.... .....-+..+|...|+.+.|+|..+ .+++++.|..+..||+++. .
T Consensus 71 ad~qws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred cceecccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 445566778888776776655555 5664322 3333444445999999999999887 7899999999999999875 4
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC-CCEEEEEECC
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRD 162 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd-g~lLaSgS~D 162 (1525)
+++.+. ....-. .|+|+-....++..+..+.|+|||.+.. ......+++|...|+++.|..- ...+.+++.|
T Consensus 150 p~ys~~~w~s~as-----qVkwnyk~p~vlasshg~~i~vwd~r~g-s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 150 PFYSTSSWRSAAS-----QVKWNYKDPNVLASSHGNDIFVWDLRKG-STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred ceeeeecccccCc-----eeeecccCcchhhhccCCceEEEeccCC-CcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 555555 444445 7999987777777888889999999964 1222236689999999998753 3467899999
Q ss_pred CCeeEEEee
Q 000424 163 GSLQVWKTR 171 (1525)
Q Consensus 163 gtIkIWDlr 171 (1525)
++|+.||..
T Consensus 224 ~tvkfw~y~ 232 (1081)
T KOG0309|consen 224 GTVKFWDYS 232 (1081)
T ss_pred Cceeeeccc
Confidence 999999987
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0081 Score=70.87 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred EEEEEEec---cceEEEEEeecC-CccceEEccCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCC--CcEEEEEe
Q 000424 20 VVFFGFHR---RMSVTVVGTVEG-GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD---GLIRAYNIHT--YAVHYTLQ 90 (1525)
Q Consensus 20 ~Vf~s~~~---d~sV~v~dtve~-gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~D---gtIrIWDi~t--~k~l~tL~ 90 (1525)
.+++|... +..|.+|..... +.........+.+..+-++|+|++++|.++..+ |.|-.|.+.. ++....=+
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~ 83 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR 83 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec
Confidence 46677766 777888775422 221111122367788889999999988887654 7777777664 43221111
Q ss_pred ---cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCC--CceeeEeecccCcC----------eEEEEEcCCCC
Q 000424 91 ---LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIE--RPSMIGIIQVGSQP----------ITSVAWLPMLR 154 (1525)
Q Consensus 91 ---H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~--~~s~i~il~gH~~~----------VtsIafsPdg~ 154 (1525)
..++-+ .|+++++|+++++++ ..|.|.|+-++.. ....++ ...|... +.+..+.|+++
T Consensus 84 ~~~~g~~p~-----yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 84 QTLPGSPPC-----YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-VVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred cccCCCCCe-----EEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-eeecCCCCCCccccCCccceeeeCCCCC
Confidence 223335 899999999999999 7899999988752 112211 1134444 78899999999
Q ss_pred EEEEEECC-CCeeEEEee
Q 000424 155 LLVTLCRD-GSLQVWKTR 171 (1525)
Q Consensus 155 lLaSgS~D-gtIkIWDlr 171 (1525)
+|++++.. -.|.+|++.
T Consensus 158 ~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred EEEEeecCCceEEEEEcc
Confidence 99998652 268888875
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00076 Score=83.21 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=94.2
Q ss_pred cEEEEEEcCCCCEEEEEEeccc--eEEE--EEeecC-CccceEEccCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEE--
Q 000424 8 TEVHLALTPLQPVVFFGFHRRM--SVTV--VGTVEG-GRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYN-- 79 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~--sV~v--~dtve~-gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs-~DgtIrIWD-- 79 (1525)
..+..+|+|++..|++...... .+.+ ++...+ ......+..++.......+|+|+|+.|+..+ .++..+||.
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3456789999998888774322 2322 222111 1233333332334456789999999776655 467666664
Q ss_pred cCC-CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCC---CcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC
Q 000424 80 IHT-YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 154 (1525)
Q Consensus 80 i~t-~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~D---gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~ 154 (1525)
+.. +.....+. +...+. ...|+|||++|+..+.+ ..|.+||+.+.....+ ..+...+.+..|+|||+
T Consensus 312 ~~~~g~~~~~lt~~~~~~~-----~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L---t~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSS-----CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL---TTSPENKESPSWAIDSL 383 (428)
T ss_pred CcccccceEEeccCCCCcc-----ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc---cCCCCCccceEECCCCC
Confidence 332 23344455 445667 88999999999876643 4689999986422222 22234567899999999
Q ss_pred EEEEEE-CCC--CeeEEEe
Q 000424 155 LLVTLC-RDG--SLQVWKT 170 (1525)
Q Consensus 155 lLaSgS-~Dg--tIkIWDl 170 (1525)
.|+..+ .++ .|.+||+
T Consensus 384 ~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 384 HLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEEEEECCCCCceEEEEEC
Confidence 877543 333 4555554
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.6e-05 Score=60.65 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=35.5
Q ss_pred cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEe
Q 000424 84 AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 125 (1525)
Q Consensus 84 k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWD 125 (1525)
+++++++ |.+.|+ +++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~-----~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSIN-----SIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEE-----EEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEE-----EEEEecccccceeeCCCCEEEEEC
Confidence 6788999 999999 999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0028 Score=75.83 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=104.0
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccc---eEEccCCCCCeEEEEEcCCCCEEEE-EECCCcEEEEEcC--CCc
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP---TKIKTDLKKPIVNLACHPRLPVLYV-AYADGLIRAYNIH--TYA 84 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~---t~ik~~H~~~V~sIaf~P~g~~LaS-Gs~DgtIrIWDi~--t~k 84 (1525)
++.++|++.++|+.--....|.++......... ..+.......-+.++|||+++++.+ .-.+++|.++++. ++.
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 589999999999887767777777754333112 1222224456788999999997655 4567889999987 442
Q ss_pred --EEEEEe-cCCceee-cCceeEEEeCCCCEEEEEe-CCCcEEEEeCCC--CCceeeEeecccCcCeEEEEEcCCCCEEE
Q 000424 85 --VHYTLQ-LDNTIKL-LGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSI--ERPSMIGIIQVGSQPITSVAWLPMLRLLV 157 (1525)
Q Consensus 85 --~l~tL~-H~~~V~~-~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t--~~~s~i~il~gH~~~VtsIafsPdg~lLa 157 (1525)
.+.++. ......- .....++++|||++|+++. .+.+|.+|++.. .....+..........+.++++|+|++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 333333 1111110 0123899999999999887 678899999953 22333333333345578999999999988
Q ss_pred EEE-CCCCeeEEEee
Q 000424 158 TLC-RDGSLQVWKTR 171 (1525)
Q Consensus 158 SgS-~DgtIkIWDlr 171 (1525)
.+. .+++|.+|++.
T Consensus 308 Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 308 VANQDSNTVSVFDID 322 (345)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 777 46689999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0017 Score=78.68 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=102.6
Q ss_pred cccCCcEEE--EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEE
Q 000424 3 SISVDTEVH--LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYN 79 (1525)
Q Consensus 3 ~~~~~~e~h--LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs-~DgtIrIWD 79 (1525)
+|...+..| ++++|++.++|++. ++..+.++|... .+....++. ...-++++++++|+++++++ .++.+.++|
T Consensus 31 ~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~-~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 31 RIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLAT-GKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTS-SSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCc-ccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEec
Confidence 455555556 57899999999986 678999998643 344444544 35578899999999887665 689999999
Q ss_pred cCCCcEEEEEe-cC-------CceeecCceeEEEeCCCCEEEE-EeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEc
Q 000424 80 IHTYAVHYTLQ-LD-------NTIKLLGAGAFAFHPTLEWLFV-GDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL 150 (1525)
Q Consensus 80 i~t~k~l~tL~-H~-------~~V~~~g~~sVaFsPdg~~LaS-gS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafs 150 (1525)
.++.++++++. .. ..+. .+..+|..+.++. --+.+.|.+-|+............ .........|+
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~-----aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d 180 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVA-----AIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD 180 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EE-----EEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-
T ss_pred cccccceeecccccccccccCCCce-----eEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccC
Confidence 99999999987 32 2345 6777888775444 445688877798753222222222 24456789999
Q ss_pred CCCCEEEEE-ECCCCeeEEEee
Q 000424 151 PMLRLLVTL-CRDGSLQVWKTR 171 (1525)
Q Consensus 151 Pdg~lLaSg-S~DgtIkIWDlr 171 (1525)
|++++++.+ ..+..|-++|.+
T Consensus 181 pdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETT
T ss_pred cccceeeecccccceeEEEeec
Confidence 999987665 456688889865
|
... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=82.26 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=93.4
Q ss_pred EEEEEcCCCCEEEEEEeccc--eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEE-EEECCCc--EEEEEcCCCc
Q 000424 10 VHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYADGL--IRAYNIHTYA 84 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~--sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~La-SGs~Dgt--IrIWDi~t~k 84 (1525)
...+|+|++..+++....+. .+.+++. +++. ...+.. ..+.....+|+|+|+.|+ +.+.++. |.+||+.+++
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl-~tg~-~~~lt~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDI-YTQV-REKVTS-FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEEC-CCCC-eEEecC-CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 46799999998887765443 3555553 3332 222322 234455789999999765 4566775 7777888776
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCCc--EEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGT--LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~Dgt--IrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
.. .+. +..... ..+|+|||++|+..+ .++. |.++|..+.....+ . .+.......+|+|+|++|+..+
T Consensus 298 ~~-~lt~~~~~~~-----~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L--t-~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 298 LT-RITRHRAIDT-----EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL--T-FEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred eE-ECccCCCCcc-----ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE--e-cCCCCCcCeeECCCCCEEEEEE
Confidence 53 344 555556 789999999887666 3444 55557664322222 1 1223344679999999887765
Q ss_pred C-CCCeeEEEee
Q 000424 161 R-DGSLQVWKTR 171 (1525)
Q Consensus 161 ~-DgtIkIWDlr 171 (1525)
. ++..+||-++
T Consensus 369 ~~~g~~~I~~~d 380 (448)
T PRK04792 369 RTNGKFNIARQD 380 (448)
T ss_pred ecCCceEEEEEE
Confidence 5 4556666443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=79.34 Aligned_cols=154 Identities=12% Similarity=0.142 Sum_probs=103.5
Q ss_pred EEEEEEcCCCCEEEEEEeccceEEEEEeecCC-ccceEEccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCC-CcE
Q 000424 9 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHT-YAV 85 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g-k~~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t-~k~ 85 (1525)
..-|.|++.+..++++. .+.++..++..+.. ......+. |+-+.....|+-..+ ++.+|++|+.+..||++. ++.
T Consensus 124 ~lslD~~~~~~~i~vs~-s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSD-SRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eeEEEeeccCceEEEEc-CCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 45678888888887776 46777644432221 12223344 999999999987665 789999999999999983 334
Q ss_pred EEE-Ee-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC-EEEEEEC
Q 000424 86 HYT-LQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCR 161 (1525)
Q Consensus 86 l~t-L~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~ 161 (1525)
+.. .+ |...|. ++.=+| .+.+|++|+.|-.|++||.+...+.+.. ..-.+.|+.+.+||... .+..++.
T Consensus 202 i~~n~kvH~~GV~-----SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~--~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 202 IWHNSKVHTSGVV-----SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK--AKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred eeecceeeecceE-----EEecCCCCCceEEEeccccceeeeehhcccCcccc--CccccceEEEEecchhhhHHHHHHH
Confidence 433 33 777777 888776 6789999999999999999963222220 11236899999999533 2233334
Q ss_pred CCCeeEEEee
Q 000424 162 DGSLQVWKTR 171 (1525)
Q Consensus 162 DgtIkIWDlr 171 (1525)
-..++|-+..
T Consensus 275 h~G~ki~~~~ 284 (339)
T KOG0280|consen 275 HNGAKILDSS 284 (339)
T ss_pred hcCceEEEec
Confidence 4445665554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00026 Score=82.26 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=67.5
Q ss_pred ceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE-EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCc
Q 000424 43 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV-HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 120 (1525)
Q Consensus 43 ~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~-l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dgt 120 (1525)
.+.++ +|.+.|++++|.|...+|++|+.|..|.+||+..++- ...+. |.+.|. .+.+-+.-+.+++++.||.
T Consensus 190 i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~-----~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 190 ITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ-----ALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred EEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh-----hhhhhhhheeeeeccCCCe
Confidence 33444 5999999999999999999999999999999876643 34455 999999 8888787888999999999
Q ss_pred EEEEeCC
Q 000424 121 LLAWDVS 127 (1525)
Q Consensus 121 IrVWDv~ 127 (1525)
|-+||++
T Consensus 264 i~~w~mn 270 (404)
T KOG1409|consen 264 IVVWNMN 270 (404)
T ss_pred EEEEecc
Confidence 9999986
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00044 Score=90.18 Aligned_cols=120 Identities=13% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCC-------cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCC
Q 000424 49 DLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTY-------AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRG 119 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g-~~LaSGs~DgtIrIWDi~t~-------k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg 119 (1525)
+|+..|..++.++.. .+|+|||.||+||+||.+.- +...++. ....+. ++.+.+.+..++.++.||
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~-----~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE-----KVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE-----EEEeccCCCeEEEEcCCC
Confidence 488888888888765 89999999999999997532 3334444 567788 999999999999999999
Q ss_pred cEEEEeCCCC-----CceeeEeecccCc--CeEEEEEcC-CC-CEEEEEECCCCeeEEEeeee
Q 000424 120 TLLAWDVSIE-----RPSMIGIIQVGSQ--PITSVAWLP-ML-RLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 120 tIrVWDv~t~-----~~s~i~il~gH~~--~VtsIafsP-dg-~lLaSgS~DgtIkIWDlr~~ 173 (1525)
.|++.++.-. ........+.|.. .|..-+|.- .+ ..++-+..-+.|..||+|..
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 9999988742 1111112222322 233333322 23 37788888899999999843
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=81.47 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=89.0
Q ss_pred EEEEEcCCCCE---EEEEEec-cceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-----CCcEEEEEc
Q 000424 10 VHLALTPLQPV---VFFGFHR-RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-----DGLIRAYNI 80 (1525)
Q Consensus 10 ~hLA~hP~~p~---Vf~s~~~-d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-----DgtIrIWDi 80 (1525)
..=+|+|++.. +|++... +..+.+.+ .+++. ...+.. ..+.....+|+|+|+.|+..+. |..+.+||+
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~-l~~g~-~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGS-LENPA-GKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEE-CCCCC-ceEeec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence 34479999764 3344432 22344444 34433 223322 4555667899999988765542 334555776
Q ss_pred CCC---cEEEEEec-CCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeC--CCCCceeeEeecccCcCeEEEEEcCCC
Q 000424 81 HTY---AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDV--SIERPSMIGIIQVGSQPITSVAWLPML 153 (1525)
Q Consensus 81 ~t~---k~l~tL~H-~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv--~t~~~s~i~il~gH~~~VtsIafsPdg 153 (1525)
.++ +....... ..... ..+|+|||++|+..+ .++...+|.+ ...... ...+..+...+.+.+|+|||
T Consensus 265 ~~g~~g~~~~lt~~~~~~~~-----~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 265 ETGAIGKPRRLLNEAFGTQG-----NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred ccCCCCcceEeecCCCCCcC-----CeEECCCCCEEEEEECCCCCceEEEEECcccccc-eEEeccCCCCccceeECCCC
Confidence 653 32222222 23345 789999999888766 5776666644 311111 11223445567789999999
Q ss_pred CEEEEEECCC---CeeEEEee
Q 000424 154 RLLVTLCRDG---SLQVWKTR 171 (1525)
Q Consensus 154 ~lLaSgS~Dg---tIkIWDlr 171 (1525)
+.|+..+.++ .|.+||+.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECC
Confidence 9988776542 46777754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0002 Score=82.96 Aligned_cols=156 Identities=13% Similarity=0.205 Sum_probs=98.9
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEc--c----CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCc
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK--T----DLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik--~----~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k 84 (1525)
|.+..++... .++ ++..|.+|..--...+...+. - +.+.-|++..|||... +|+..+..|+||+.|++...
T Consensus 170 IS~NsD~Et~-lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 170 ISVNSDKETF-LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeecCccceE-eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 4556666553 333 688888887522222222211 1 1345688999999865 67888889999999998432
Q ss_pred E----EEEEe-cCCceee-------cCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccC-----------
Q 000424 85 V----HYTLQ-LDNTIKL-------LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS----------- 141 (1525)
Q Consensus 85 ~----l~tL~-H~~~V~~-------~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~----------- 141 (1525)
. .+.+. ..++..- +.++.|.|++.|+|+++-+- -+|++||++-..+.+ .+.+.|.
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv-~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV-ETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc-eEEeehHhHHHHHHHHhh
Confidence 1 12222 1111110 11248999999999987642 689999996432222 2333442
Q ss_pred -cCe---EEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 142 -QPI---TSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 142 -~~V---tsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+.| ..++|+-++.+++|||-...+++++..
T Consensus 326 nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred ccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 222 458999999999999999999999943
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=84.26 Aligned_cols=116 Identities=10% Similarity=0.107 Sum_probs=91.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-----cEEEEEecCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEE
Q 000424 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-----AVHYTLQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAW 124 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~-----k~l~tL~H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVW 124 (1525)
+..|.++.|+-.++++..|+..|.|..+|++.. .+...+-|...|+ ++..-. ++++|++.+.+|+|++|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvt-----slq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVT-----SLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchh-----hhhhhccccceEeeccCcCceeEe
Confidence 456888999999999999999999999998754 4556666999999 988766 78999999999999999
Q ss_pred eCCCC-CceeeEeecccCcCeEE--EEEcCCCCEEEEEECCCCeeEEEee
Q 000424 125 DVSIE-RPSMIGIIQVGSQPITS--VAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 125 Dv~t~-~~s~i~il~gH~~~Vts--IafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
|.+-. ...-+....||...-.- +-.++....++++++|...|||.++
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 99942 11224556788544332 3345677789999999999999987
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0088 Score=71.68 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=107.6
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceE--Ecc----------CCCCCeEEEEEcCCCCEEEEEEC-C
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK--IKT----------DLKKPIVNLACHPRLPVLYVAYA-D 72 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~--ik~----------~H~~~V~sIaf~P~g~~LaSGs~-D 72 (1525)
+..-.||+++|++.++|++.....++.++...+.+..... +.. +-....-++.|+|+++++++... .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 4456899999999999999999999988887554432222 111 11233568999999998777543 4
Q ss_pred CcEEEEEcCCCc--E--EEEEe--cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCC--CCceeeE---ee-cc
Q 000424 73 GLIRAYNIHTYA--V--HYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSI--ERPSMIG---II-QV 139 (1525)
Q Consensus 73 gtIrIWDi~t~k--~--l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t--~~~s~i~---il-~g 139 (1525)
..|.+|++.... . ...+. ....-+ .+.|+|+++++++.. .+++|.++++.. .....+. .+ .+
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-----h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-----HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEE-----EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCc-----EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 569999987654 3 23344 445667 899999999987776 889999999883 2111111 11 01
Q ss_pred --cCcCeEEEEEcCCCCEEEEEE-CCCCeeEEEee
Q 000424 140 --GSQPITSVAWLPMLRLLVTLC-RDGSLQVWKTR 171 (1525)
Q Consensus 140 --H~~~VtsIafsPdg~lLaSgS-~DgtIkIWDlr 171 (1525)
.......|.++|||++|..+. .+.+|.+|+++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 122567899999999876655 46689999984
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0022 Score=78.59 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=90.7
Q ss_pred EEEEcCCCCEEEEEEeccc--eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCcE
Q 000424 11 HLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAYNIHTYAV 85 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~--sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-Dg--tIrIWDi~t~k~ 85 (1525)
..+|+|++..++++...+. .+.+++. +++ ....+.. +........|+|++..++..+. ++ .|.+||+.+++.
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~-~~~-~~~~lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDL-ASR-QLSRVTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEEC-CCC-CeEEccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 5799999999888775544 4555553 222 2333333 5556677899999997665553 33 577778877764
Q ss_pred EEEEecCCceeecCceeEEEeCCCCEEEEEeC-CC--cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECC
Q 000424 86 HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RG--TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 86 l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~-Dg--tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~D 162 (1525)
........... ...|+|||++|+..+. ++ .|.+||+.+.....+ . +.......+|+|+|++++..+.+
T Consensus 324 ~~lt~~~~~~~-----~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l--t--~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 324 ERVTFVGNYNA-----RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL--T--DTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EEeecCCCCcc-----ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc--c--CCCCCCCceECCCCCEEEEEEec
Confidence 32222222334 5789999999987764 33 577889886422222 1 12222356899999988776654
Q ss_pred -CCeeEE
Q 000424 163 -GSLQVW 168 (1525)
Q Consensus 163 -gtIkIW 168 (1525)
+.-++|
T Consensus 395 ~g~~~l~ 401 (430)
T PRK00178 395 QGRGVLM 401 (430)
T ss_pred CCceEEE
Confidence 444444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00011 Score=90.95 Aligned_cols=158 Identities=13% Similarity=0.187 Sum_probs=118.1
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-cEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-AVH 86 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~-k~l 86 (1525)
.+.-+.|||+.|-|+....-+..+.+|++.....+...... -...-..++|+-..+.++..+....|++||.+.+ .++
T Consensus 116 aitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 116 AITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL 194 (1081)
T ss_pred ceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcce
Confidence 45667899999999999988999999997665555444433 3455677899988887777777788999998765 688
Q ss_pred EEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCCCCC----c-----------------------------
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIER----P----------------------------- 131 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~t~~----~----------------------------- 131 (1525)
.+++ |...|+ .++|.. ....+.+++.|++|+.||+...+ .
T Consensus 195 ~s~K~~vs~vn-----~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 195 CSLKGHVSSVN-----SIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred EEecccceeee-----hHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe
Confidence 8888 888899 999876 44668899999999999987410 0
Q ss_pred --------------------eeeEeecccCcCeEEEEEcCCC----------CEEEEEECCCCeeEEEee
Q 000424 132 --------------------SMIGIIQVGSQPITSVAWLPML----------RLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 132 --------------------s~i~il~gH~~~VtsIafsPdg----------~lLaSgS~DgtIkIWDlr 171 (1525)
+.+..+.||.+.|..+-|...+ -.|+|-|.|.++|+|-+.
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 0001234677777666664322 158999999999999876
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=88.00 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=111.9
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCC-----c-----cceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-----R-----APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRA 77 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g-----k-----~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrI 77 (1525)
+=+-+|++|-.+..|.....+.-+.+++...-. . ++..+..+..-.|++++++.++.-++++..|-.|.+
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 346688899888777777667766666652211 1 111111123346899999988887788888999999
Q ss_pred EEcC--CC----------cEEE-EEe-cCCceeecCceeEE-EeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCc
Q 000424 78 YNIH--TY----------AVHY-TLQ-LDNTIKLLGAGAFA-FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQ 142 (1525)
Q Consensus 78 WDi~--t~----------k~l~-tL~-H~~~V~~~g~~sVa-FsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~ 142 (1525)
+.-. .+ ..++ .++ |.+.-+++ .|- |-|...|++|||+=|.|.|||-.+ ..++..+.+-..
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVK---gVNFfGPrsEyVvSGSDCGhIFiW~K~t--~eii~~MegDr~ 437 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVK---GVNFFGPRSEYVVSGSDCGHIFIWDKKT--GEIIRFMEGDRH 437 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccc---eeeeccCccceEEecCccceEEEEecch--hHHHHHhhcccc
Confidence 9522 22 1222 256 76543322 443 468899999999999999999884 455555667777
Q ss_pred CeEEEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 143 PITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 143 ~VtsIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
-|+|+.=||..++|||++.|..||||..
T Consensus 438 VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 438 VVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred eEeccCCCCCCchhhccCCccceeeecC
Confidence 9999999999999999999999999975
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0006 Score=80.45 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=93.7
Q ss_pred CEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEE-Ee-cCCcee
Q 000424 19 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT-LQ-LDNTIK 96 (1525)
Q Consensus 19 p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~t-L~-H~~~V~ 96 (1525)
++.|++..+...+.++++..+.+++..+.. .+.+|+++...|+++.+.+|..-+.+..+|+++++.... ++ ..++++
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR 294 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence 566777778889999999877777777766 688999999999999999999999999999999998877 66 789999
Q ss_pred ecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 97 LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 97 ~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
++.-||.+++++++|-|+.|||+|+.+
T Consensus 295 -----sih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 295 -----SIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred -----eEEEcCCCceEEeeccceeEEEeeccc
Confidence 999999999999999999999999995
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0019 Score=79.99 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=62.0
Q ss_pred cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 91 H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
....|. |++++|+..+++.|+.||+|.+||..+.....+ .+.-.++.++|||+|.+++.|+.-|.+++||+
T Consensus 258 L~s~v~-----~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 258 LPSQVI-----CCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cCCcce-----EEecCcccceEEEEecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 677888 999999999999999999999999985433332 34566789999999999999999999999997
Q ss_pred e
Q 000424 171 R 171 (1525)
Q Consensus 171 r 171 (1525)
.
T Consensus 329 A 329 (545)
T PF11768_consen 329 A 329 (545)
T ss_pred e
Confidence 5
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0037 Score=77.61 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=86.1
Q ss_pred EEEEEcCCCCEEEEEEeccce--EEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCc
Q 000424 10 VHLALTPLQPVVFFGFHRRMS--VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAYNIHTYA 84 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~s--V~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-Dg--tIrIWDi~t~k 84 (1525)
...+|+|++..++++...+.. +.+++. +++ ....+.. |.......+|+|+++.++..+. ++ .|.++|+.+++
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl-~tg-~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDI-ATK-ALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEEC-CCC-CeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 467999999988887665554 444442 322 3333333 5556778899999997765543 44 46666777776
Q ss_pred EEEEEe-cCCceeecCceeEEEeCCCCEEEEEeC-CCcEE--EEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLL--AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 85 ~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~-DgtIr--VWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
... +. +..... ..+|+|||++|+..+. ++... ++|+.+.....+ ..+ ......+|+|+|+.|+..+
T Consensus 342 ~~~-Lt~~g~~~~-----~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l---t~~-~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 342 VSR-LTFEGEQNL-----GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL---TST-RLDESPSVAPNGTMVIYST 411 (448)
T ss_pred EEE-EecCCCCCc-----CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc---cCC-CCCCCceECCCCCEEEEEE
Confidence 433 33 333334 6789999999887663 45444 457664322222 121 1223458999999877665
Q ss_pred CCC
Q 000424 161 RDG 163 (1525)
Q Consensus 161 ~Dg 163 (1525)
.++
T Consensus 412 ~~~ 414 (448)
T PRK04792 412 TYQ 414 (448)
T ss_pred ecC
Confidence 443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0031 Score=85.78 Aligned_cols=161 Identities=11% Similarity=0.093 Sum_probs=105.1
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEcc--------CC------CCCeEEEEEcCCCC-EEEEEECCCc
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT--------DL------KKPIVNLACHPRLP-VLYVAYADGL 74 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~--------~H------~~~V~sIaf~P~g~-~LaSGs~Dgt 74 (1525)
.-|+|+|..-.+|++-.....|.+++...+.. ..+.+ ++ -....+|+++|++. ++++.+.++.
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35889997778888877777777776433211 00100 01 12346799999998 4556667799
Q ss_pred EEEEEcCCCcEEEEE-------------e-cCC---ceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCc-eeeEe
Q 000424 75 IRAYNIHTYAVHYTL-------------Q-LDN---TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP-SMIGI 136 (1525)
Q Consensus 75 IrIWDi~t~k~l~tL-------------~-H~~---~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~-s~i~i 136 (1525)
|++||+.++...... . +.. ...+.+...++|+++|..+++-+.++.|++||..+... .+.+.
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999999876532111 0 000 01112234889999999888888999999999975311 11110
Q ss_pred ----------ecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 137 ----------IQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 137 ----------l~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
..++-....+++++++|+++++.+.+++|++||++.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 112234577899999999999999999999999863
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=88.99 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=113.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
|-..|+++.-||..++.++|+.||.|++|....++.+.+++ ....|+ .+.|+.+|+.+..+..||.+.+|...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt-----r~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT-----RSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhh-----hhhhcccCCceeeeccCCceeecccC
Confidence 55678899999999999999999999999999999999998 457788 89999999999999999999999988
Q ss_pred CCCceeeEeecccCcCeEEEEEcCCCCEEEEE---ECCCCeeEEEeeeecCCCCCCCccccccCCCcccccccccccccC
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTL---CRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQG 204 (1525)
Q Consensus 128 t~~~s~i~il~gH~~~VtsIafsPdg~lLaSg---S~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~iLs~~g 204 (1525)
.+.+. ..+.|+...+.+.|-. ..++++ ++++.+.+||... ++.... ++ ..+
T Consensus 2282 --pk~~~-s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~--~~~~s~---------------v~---~~H- 2335 (2439)
T KOG1064|consen 2282 --PKPYT-SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLL--PPMNSL---------------VH---TCH- 2335 (2439)
T ss_pred --Cccee-ccccCCccccceeeee--hhhhccccCCCCCcccchhccc--Ccccce---------------ee---eec-
Confidence 23332 3567888888888865 556665 4577999999642 211110 00 111
Q ss_pred CcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccc
Q 000424 205 GEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAY 245 (1525)
Q Consensus 205 G~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~ 245 (1525)
..+++++++-|+.-++. +||-+..+++|+
T Consensus 2336 ------~~gaT~l~~~P~~qlli------sggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2336 ------DGGATVLAYAPKHQLLI------SGGRKGEVCLFD 2364 (2439)
T ss_pred ------CCCceEEEEcCcceEEE------ecCCcCcEEEee
Confidence 12467888888877665 666666655554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.013 Score=79.97 Aligned_cols=159 Identities=12% Similarity=0.126 Sum_probs=96.7
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEcc-CC---------------CCCeEEEEEcCC-CCEEEEEECC
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT-DL---------------KKPIVNLACHPR-LPVLYVAYAD 72 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~-~H---------------~~~V~sIaf~P~-g~~LaSGs~D 72 (1525)
..|++.|++-.+|++-.....|..++... +. .+.+.+ +. -..-..++|+|+ +.++++.+.+
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~-~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVN-ET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCC-CE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 56788887777777654444555554311 11 111110 00 012247899994 5566777788
Q ss_pred CcEEEEEcCCCcEEEEEe-cC------C----ceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeEe----
Q 000424 73 GLIRAYNIHTYAVHYTLQ-LD------N----TIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGI---- 136 (1525)
Q Consensus 73 gtIrIWDi~t~k~l~tL~-H~------~----~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~i---- 136 (1525)
+.|++||..++... ++. .. . ...+.....++|+|++++|+.+. .++.|++||+.+.....+.-
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 99999998876543 222 10 0 00111224799999998666554 78999999988532111100
Q ss_pred -------e--------cccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 137 -------I--------QVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 137 -------l--------~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+ ..+-....+++|+++|.++++.+.+++|++||..
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 0 0011124689999999999999999999999975
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00028 Score=84.92 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=83.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-------CCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCC
Q 000424 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH-------TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRG 119 (1525)
Q Consensus 48 ~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~-------t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg 119 (1525)
.+|+..|+.++--.+.+.|++++.|.+||+|.++ +..|.++++ |..+|. ++.|-.+.++++++ |+
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~-----~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH-----DIGFLADLRSIASC--DG 804 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCccc-----ceeeeeccceeeec--cC
Confidence 3699999998877778889999999999999976 345888888 999999 99999999888655 78
Q ss_pred cEEEEeCCCC--Cceee-EeecccCcCeEEEEEcCCCCE-EEEEECCCCeeEEEeee
Q 000424 120 TLLAWDVSIE--RPSMI-GIIQVGSQPITSVAWLPMLRL-LVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 120 tIrVWDv~t~--~~s~i-~il~gH~~~VtsIafsPdg~l-LaSgS~DgtIkIWDlr~ 172 (1525)
-|.+||--.. ..++. ....+....|.|+-- -+.++ ++.|+...||+++|.|.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEeccc-Ccchheeeeccchhhheeeeccc
Confidence 9999996421 11111 011122334444421 13344 44558899999999984
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=69.33 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=110.0
Q ss_pred ccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCc--cceEEccCCCCC----------eEEEEEcCCCCEEEEEEC
Q 000424 4 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKP----------IVNLACHPRLPVLYVAYA 71 (1525)
Q Consensus 4 ~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk--~~t~ik~~H~~~----------V~sIaf~P~g~~LaSGs~ 71 (1525)
+++..--|+++.+++.+||++......|.+.-..+.+. .+..+.. |.++ +=...+.|++++|++.+.
T Consensus 86 ~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 86 LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 44555689999999999999999998888876644332 2222222 5555 777889999998887654
Q ss_pred -CCcEEEEEcCCCcEEEEEe----cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCcee--eE-------e
Q 000424 72 -DGLIRAYNIHTYAVHYTLQ----LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSM--IG-------I 136 (1525)
Q Consensus 72 -DgtIrIWDi~t~k~l~tL~----H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~--i~-------i 136 (1525)
--.|.+|++..++....-. ....-+ .+.|||++++..+.. -+++|-+|.+......+ ++ -
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPR-----Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPR-----HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcc-----eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 2358999998775433222 334456 899999999988777 89999999998631111 11 1
Q ss_pred ecccCcCeEEEEEcCCCCEEEEEECC-CCeeEEEe
Q 000424 137 IQVGSQPITSVAWLPMLRLLVTLCRD-GSLQVWKT 170 (1525)
Q Consensus 137 l~gH~~~VtsIafsPdg~lLaSgS~D-gtIkIWDl 170 (1525)
+.+ ......|..+|||++|..+..- .+|.++.+
T Consensus 240 F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 240 FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 112 3455678899999999887542 25555554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0031 Score=78.24 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=63.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
.+...|.+++++|++..|+.||.||+|.+||...+....+ ++.-..+ .++|||+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~-----~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPT-----LIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccce-----EEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 3678999999999999999999999999999876533222 3445566 899999999999999999999999874
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0048 Score=78.33 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=77.3
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCC-----CCEEEEEeCCCcEEEEeCC--CCCce
Q 000424 60 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-----LEWLFVGDRRGTLLAWDVS--IERPS 132 (1525)
Q Consensus 60 ~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPd-----g~~LaSgS~DgtIrVWDv~--t~~~s 132 (1525)
.-.|.+++||+.||+|-|-.+.+.+...++.-..++. +|+++|+ .+.+++||.-| +.++.-+ ....+
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpik-----sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~ 153 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIK-----SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS 153 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcce-----eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc
Confidence 4468999999999999999998888887787667888 9999998 46799999888 5554322 01223
Q ss_pred eeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 133 MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 133 ~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
. .++...++|.+|+|+ |.++|=++++ .|+|+|+.
T Consensus 154 v--~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~ 187 (846)
T KOG2066|consen 154 V--VLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDTP 187 (846)
T ss_pred e--eeecCccceEEEEec--CcEEEEecCC-CcEEEecc
Confidence 3 255668899999996 5578777655 59999986
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=76.23 Aligned_cols=154 Identities=12% Similarity=0.173 Sum_probs=103.5
Q ss_pred EEEcC-CCCEEEEEEeccceEEEEEeecCCccc----------------------------------eEEccCCCCCeEE
Q 000424 12 LALTP-LQPVVFFGFHRRMSVTVVGTVEGGRAP----------------------------------TKIKTDLKKPIVN 56 (1525)
Q Consensus 12 LA~hP-~~p~Vf~s~~~d~sV~v~dtve~gk~~----------------------------------t~ik~~H~~~V~s 56 (1525)
+.|.+ .+.-.|.-+.++.++++|-..+.+... ......|.--|++
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 45554 455566666678999988765543322 1112246667899
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEE---e-cC-----CceeecCceeEEEeCC-CCEEEEEeCCCcEEEEeC
Q 000424 57 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL---Q-LD-----NTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 57 Iaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL---~-H~-----~~V~~~g~~sVaFsPd-g~~LaSgS~DgtIrVWDv 126 (1525)
|.++.+...++++ +|-.|.+|++.--..-+++ + +. .-|+ +-.|||. .++++-.|..|+|++-|+
T Consensus 170 IS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT-----saEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 170 ISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT-----SAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHh-----hhccCHhHccEEEEecCCCcEEEeec
Confidence 9999999888886 6788999997644332332 2 22 3355 8899995 577888889999999999
Q ss_pred CCC-----Ccee---------eEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 127 SIE-----RPSM---------IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 127 ~t~-----~~s~---------i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
+.. ..++ ...+.+--..|..+.|+++|+|++|-+. -+|++||++.
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 941 0000 0112223346788999999999987542 5999999863
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.18 Score=61.96 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=75.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCC----------
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---------- 119 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~Dg---------- 119 (1525)
-.-++..+.|+|.|.+|++...-+ |.+|+-..+..+..+.|. .|. .+.|+|.++||.+-++..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~-~V~-----~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHP-DVK-----YLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecC-Cce-----ecccCcccceeeeeccCCccChhhccCC
Confidence 456899999999999999876654 899988777766566554 467 899999999999866433
Q ss_pred -----cEEEEeCCCCCceeeEeecccCcC--eE-EEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 120 -----TLLAWDVSIERPSMIGIIQVGSQP--IT-SVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 120 -----tIrVWDv~t~~~s~i~il~gH~~~--Vt-sIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
.+.|||..++ .++..+.+-..+ .. -+.|+-+..|.+=.. ...++|+++
T Consensus 104 ~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~ 159 (561)
T COG5354 104 FTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI 159 (561)
T ss_pred ccccCceeEEeccCc--eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec
Confidence 4899998863 222112222222 33 466777766655432 236777775
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00078 Score=79.80 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv 126 (1525)
+|-.-+..|+|+||+++++++..|+.||+-.+..--.+..|- |...|. .++.-++ ..|+|||.|++|++||+
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS-----~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS-----TISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee-----eeeeccC-ceeeecCCCCcEEEEec
Confidence 488899999999999999999999999998876666666665 999999 8887654 45899999999999999
Q ss_pred CCC
Q 000424 127 SIE 129 (1525)
Q Consensus 127 ~t~ 129 (1525)
.+.
T Consensus 223 ~sg 225 (390)
T KOG3914|consen 223 TSG 225 (390)
T ss_pred ccC
Confidence 964
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=70.71 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=97.8
Q ss_pred EccCCCCCeEEEEEcCCCCEEEEEECCC-cEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEE
Q 000424 46 IKTDLKKPIVNLACHPRLPVLYVAYADG-LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 124 (1525)
Q Consensus 46 ik~~H~~~V~sIaf~P~g~~LaSGs~Dg-tIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVW 124 (1525)
+.-+|.+.|+-..+.-+..-++.|..|| .+-|+|..+++..+....-+.|. ++..+++|++++.+.+...+.+.
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-----av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-----AVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceE-----EEEEcCCCcEEEEEcCceEEEEE
Confidence 3345888899888887777899999999 89999999887655444778888 99999999999999999999999
Q ss_pred eCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCC----CeeEEEee
Q 000424 125 DVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG----SLQVWKTR 171 (1525)
Q Consensus 125 Dv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~Dg----tIkIWDlr 171 (1525)
|+.+.+.+++ -+....-|+.+.|||++++||-+--+| .|+++|+.
T Consensus 429 didngnv~~i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 429 DIDNGNVRLI--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred EecCCCeeEe--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 9997666665 234456799999999999999887666 68888875
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0047 Score=72.20 Aligned_cols=153 Identities=12% Similarity=0.201 Sum_probs=104.6
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEee---cCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE-c-------
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTV---EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYN-I------- 80 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtv---e~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWD-i------- 80 (1525)
+++++....+++++. ..++.-+... ++...+.. ...|..+|..+-|+-...++++.+.|..+. |. .
T Consensus 74 ~~y~~e~~~L~vg~~-ngtvtefs~sedfnkm~~~r~-~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg 150 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQD-NGTVTEFALSEDFNKMTFLKD-YLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLG 150 (404)
T ss_pred eeeeccceEEEEEEe-cceEEEEEhhhhhhhcchhhh-hhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCccc
Confidence 444454555555553 4444332222 22222222 224888888888877777777777665432 21 1
Q ss_pred ----------------------------------CCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEe
Q 000424 81 ----------------------------------HTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 125 (1525)
Q Consensus 81 ----------------------------------~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWD 125 (1525)
....++.++. |.+.+. +++|.+....+++|..|..|.+||
T Consensus 151 ~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~-----~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 151 GYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT-----CLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred ceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceE-----EEEEcCCCcEEEeccccCceEEEe
Confidence 1123345566 888888 999999999999999999999999
Q ss_pred CCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeee
Q 000424 126 VSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 126 v~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~ 173 (1525)
+--. +-..-.+.+|.+.|..+++-+.-+.+++++.||.|-+||.+..
T Consensus 226 igg~-~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 226 IGGR-KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccCC-cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 9843 2222346799999999999888899999999999999999843
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=77.11 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=85.9
Q ss_pred EEEEEcCCCCEEEEEEeccceEEEEEeecC----CccceEEccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCc
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEG----GRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~----gk~~t~ik~~H~~~V~sIaf~P-~g~~LaSGs~DgtIrIWDi~t~k 84 (1525)
+.+.||-..|.||.|+ +...|..+|...+ +++...+ . |...|+++..-. ++++|.+.+.+|+|++||.+--+
T Consensus 256 fAlQf~~s~nLv~~Gc-RngeI~~iDLR~rnqG~~~~a~rl-y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K 332 (425)
T KOG2695|consen 256 FALQFAGSDNLVFNGC-RNGEIFVIDLRCRNQGNGWCAQRL-Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK 332 (425)
T ss_pred HHHHhcccCCeeEecc-cCCcEEEEEeeecccCCCcceEEE-E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence 3456777889998888 6888888888765 4555544 3 889999988766 67889999999999999988766
Q ss_pred E---EEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 85 V---HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 85 ~---l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
+ +.++. |-+.-. ..-+..++....++++++|...|||.+.+
T Consensus 333 ~~~~V~qYeGHvN~~a---~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 333 CKKSVMQYEGHVNLSA---YLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred cccceeeeeccccccc---ccccccccccceEEEccCeeEEEEEeccc
Confidence 6 66666 654333 11334456778899999999999999985
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.029 Score=64.83 Aligned_cols=160 Identities=20% Similarity=0.312 Sum_probs=93.2
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecC-Ccc--ceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcE--
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEG-GRA--PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV-- 85 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~-gk~--~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~-- 85 (1525)
|+++++++..+..-- +..+.+-...+. ... ...+..+-.-.-+-++|+|++.+||.+...|+|+++|+-...+
T Consensus 2 ~~~~~~~Gk~lAi~q--d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ--DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred ceeecCCCcEEEEEe--ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEE
Confidence 677777777664443 222322211111 001 0112222333478899999999999999999999999752100
Q ss_pred --------------------------------EEEEecC-------------------Ccee-----ecCceeEEEeCCC
Q 000424 86 --------------------------------HYTLQLD-------------------NTIK-----LLGAGAFAFHPTL 109 (1525)
Q Consensus 86 --------------------------------l~tL~H~-------------------~~V~-----~~g~~sVaFsPdg 109 (1525)
+..+.+. ..+. -.|++++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 0000000 0000 0134588999998
Q ss_pred CEEEEEeC----CC-------cEEEEeCCCCCcee----------------------e--Eee---cccCcCeEEEEEcC
Q 000424 110 EWLFVGDR----RG-------TLLAWDVSIERPSM----------------------I--GII---QVGSQPITSVAWLP 151 (1525)
Q Consensus 110 ~~LaSgS~----Dg-------tIrVWDv~t~~~s~----------------------i--~il---~gH~~~VtsIafsP 151 (1525)
+.|+.||. |+ =+..|.+-+..+.+ . ..+ ..-...|..++.+|
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 88888762 21 25567554310000 0 011 11256788999999
Q ss_pred CCCEEEEEECCCCeeEEEeee
Q 000424 152 MLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 152 dg~lLaSgS~DgtIkIWDlr~ 172 (1525)
||.+||+.+.+|.|.+|++-.
T Consensus 240 dg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCc
Confidence 999999999999999999863
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0019 Score=73.08 Aligned_cols=72 Identities=26% Similarity=0.476 Sum_probs=61.5
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCc-EEEEEe-cCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEeCC
Q 000424 52 KPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYA-VHYTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 52 ~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k-~l~tL~-H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWDv~ 127 (1525)
+.|.+++-||..+ ++++|+.||.+-+||.+... +...+. |+..+. -|.||| ++..|++++.||.+..||.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~-----eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW-----EVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh-----heeccCCCchheeEecCCCcEEEEcCC
Confidence 4599999999765 67889999999999998763 334455 999999 999999 67899999999999999998
Q ss_pred C
Q 000424 128 I 128 (1525)
Q Consensus 128 t 128 (1525)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 4
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=73.07 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=88.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCcEEEEEe---cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecc
Q 000424 63 LPVLYVAYADGLIRAYNIHTYAVHYTLQ---LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 139 (1525)
Q Consensus 63 g~~LaSGs~DgtIrIWDi~t~k~l~tL~---H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~g 139 (1525)
...++-|-.-|.|-+|+...++....+. |.+.|+ ++.++.+...|.|++.|+.+..|+... ...+.++.+
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~-----~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~~~~ 142 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVN-----EILDAQRLGCIYSVGADLKVVYILEKE--KVIIRIWKE 142 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcce-----eeecccccCceEecCCceeEEEEeccc--ceeeeeecc
Confidence 3467778889999999999999998888 999999 999999999999999999999999984 555566778
Q ss_pred cCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 140 GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 140 H~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
....+.+++.+||+..++++| ++|++||+.
T Consensus 143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~ 172 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIE 172 (541)
T ss_pred CCCccceEEEcCCCCEEEecc--ceEEEEEcc
Confidence 888999999999999999987 589999987
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=73.91 Aligned_cols=162 Identities=10% Similarity=0.029 Sum_probs=111.0
Q ss_pred ccccCCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC----------
Q 000424 2 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA---------- 71 (1525)
Q Consensus 2 ~~~~~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~---------- 71 (1525)
+.+-.++|+.+=+.|++..+.....-+..+.+++.-. ....+.+.- .+.-..++++|++.++++.+.
T Consensus 188 ~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~et-meV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~e 264 (635)
T PRK02888 188 GYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAET-MEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAE 264 (635)
T ss_pred cEEEeCcccccccCCCCCEeecccceeEEEEEEECcc-ceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceee
Confidence 3445678888889999887766655566666666432 222223222 234567888898888777752
Q ss_pred ------------------------------CCcEEEEEcCC-----CcEEEEEecCCceeecCceeEEEeCCCCEEEEEe
Q 000424 72 ------------------------------DGLIRAYNIHT-----YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 116 (1525)
Q Consensus 72 ------------------------------DgtIrIWDi~t-----~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS 116 (1525)
+++|.+.|..+ .+.+..+.-..... .|.++|||+++++++
T Consensus 265 m~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPH-----GV~vSPDGkylyVan 339 (635)
T PRK02888 265 MMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPH-----GVNTSPDGKYFIANG 339 (635)
T ss_pred eccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCcc-----ceEECCCCCEEEEeC
Confidence 24577777776 45566665455556 899999999998877
Q ss_pred -CCCcEEEEeCCCCC----------ceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 117 -RRGTLLAWDVSIER----------PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 117 -~DgtIrVWDv~t~~----------~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
.+.+|.|.|+.+.. ..+++...... .-...+|.++|....|...|..|-.||+..
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 79999999999631 12232222222 234688999999999999999999999864
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.022 Score=65.01 Aligned_cols=106 Identities=10% Similarity=0.102 Sum_probs=76.3
Q ss_pred EEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEe-ecccCc
Q 000424 65 VLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGI-IQVGSQ 142 (1525)
Q Consensus 65 ~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~i-l~gH~~ 142 (1525)
-+..++.|.++++.++..+...+.+. ..-.++ ++++++|++|+++.++...|-.|.+.........+ ....++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n-----s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN-----SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecccccee-----eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 36677889999999876554333333 223377 99999999999999999999999776521111111 112233
Q ss_pred CeEEEEEcCCCCEEEEEECCCCeeEEEeeeecC
Q 000424 143 PITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 175 (1525)
Q Consensus 143 ~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~ 175 (1525)
.=.+.+|+.....+|+++.||++.|||+|...-
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 346889999999999999999999999995543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0074 Score=73.92 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=94.6
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-----------CCcEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-----------DGLIR 76 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-----------DgtIr 76 (1525)
||-++.|+|.+.++ +++| ...|.+|+--.-.+.. +.-| -.|.-++|+|..++|++=+. -..++
T Consensus 212 Tetyv~wSP~GTYL-~t~H-k~GI~lWGG~~f~r~~---RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 212 TETYVRWSPKGTYL-VTFH-KQGIALWGGESFDRIQ---RFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeeEEecCCceEE-EEEe-ccceeeecCccHHHHH---hccC-CCceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 78899999999986 6888 4567788731111111 1124 35889999999999998553 15689
Q ss_pred EEEcCCCcEEEEEe-c-CCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCC
Q 000424 77 AYNIHTYAVHYTLQ-L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 154 (1525)
Q Consensus 77 IWDi~t~k~l~tL~-H-~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~ 154 (1525)
|||+.+|...+.|. . ...+. +--+.||.|++|++.-.. .+|.|++..+. -+.-...-.-..|...+|+|.+.
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~---WP~frWS~DdKy~Arm~~-~sisIyEtpsf--~lld~Kslki~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLK---WPIFRWSHDDKYFARMTG-NSISIYETPSF--MLLDKKSLKISGIRDFSWSPTSN 359 (698)
T ss_pred EEEccccchhcceeccCCCccc---cceEEeccCCceeEEecc-ceEEEEecCce--eeecccccCCccccCcccCCCcc
Confidence 99999999888887 2 22111 225699999999987665 57899988752 01000001245688899999977
Q ss_pred EEEE
Q 000424 155 LLVT 158 (1525)
Q Consensus 155 lLaS 158 (1525)
+||-
T Consensus 360 llAY 363 (698)
T KOG2314|consen 360 LLAY 363 (698)
T ss_pred eEEE
Confidence 6654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.044 Score=62.70 Aligned_cols=116 Identities=12% Similarity=-0.057 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCC--cEEEEE-e-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 000424 54 IVNLACHPRLPVLYVAYADGLIRAYNIHTY--AVHYTL-Q-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 129 (1525)
Q Consensus 54 V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~--k~l~tL-~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~ 129 (1525)
+.++++++++++.++-++...|-.|.+... ..+.+. . ..+.=. +..|+.....++++..||++.|||++..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF-----~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF-----YNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce-----eeeeccCcceEEEEecCCcEEEEEeccc
Confidence 888999999999999999999999987643 233322 2 444445 7899999999999999999999999963
Q ss_pred Cc---eeeEeecccCcCeEEEEEcCCCC--EEEEEECCCCeeEEEeeeec
Q 000424 130 RP---SMIGIIQVGSQPITSVAWLPMLR--LLVTLCRDGSLQVWKTRVII 174 (1525)
Q Consensus 130 ~~---s~i~il~gH~~~VtsIafsPdg~--lLaSgS~DgtIkIWDlr~~~ 174 (1525)
.. ........|.+.++.+.|++.|. +|+-.-.=+.+++-|+|...
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 11 11122346899999999998665 33333234578899988544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.054 Score=66.35 Aligned_cols=150 Identities=16% Similarity=0.281 Sum_probs=102.3
Q ss_pred EEEEEEcCCCCEEEEEEeccc----------eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEE--EECCCcEE
Q 000424 9 EVHLALTPLQPVVFFGFHRRM----------SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV--AYADGLIR 76 (1525)
Q Consensus 9 e~hLA~hP~~p~Vf~s~~~d~----------sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaS--Gs~DgtIr 76 (1525)
.+-|-|++.+.++++-...+- +..++++.+..-++ .+ +.+++|-..+|.|+++.|++ |..+-++.
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EK-DLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ec-cccccceeeeecccCCceeEEeccccccee
Confidence 467888999888876554322 22334433222222 22 46899999999999987765 45788999
Q ss_pred EEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeC---CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCC
Q 000424 77 AYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 153 (1525)
Q Consensus 77 IWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~---DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg 153 (1525)
++|++.. +.+.+- ...-+ .+-|+|.++|++.++- .|.|-+||... +..+++.+.+- ..+-+.|+|++
T Consensus 302 ~~~lr~N-l~~~~P-e~~rN-----T~~fsp~~r~il~agF~nl~gni~i~~~~~-rf~~~~~~~~~--n~s~~~wspd~ 371 (561)
T COG5354 302 VFDLRGN-LRFYFP-EQKRN-----TIFFSPHERYILFAGFDNLQGNIEIFDPAG-RFKVAGAFNGL--NTSYCDWSPDG 371 (561)
T ss_pred ecccccc-eEEecC-Ccccc-----cccccCcccEEEEecCCccccceEEeccCC-ceEEEEEeecC--CceEeeccCCc
Confidence 9999876 333333 33334 6789999999999874 56799999884 34555444442 33457899999
Q ss_pred CEEEEEE------CCCCeeEEEee
Q 000424 154 RLLVTLC------RDGSLQVWKTR 171 (1525)
Q Consensus 154 ~lLaSgS------~DgtIkIWDlr 171 (1525)
.++.+.- .|..|+|||+.
T Consensus 372 qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 372 QFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred eEEEecCCCcccccCcceEEEEec
Confidence 9887763 47799999985
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0064 Score=73.74 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=99.4
Q ss_pred EEEEEEeccceEEEEEeecCC------ccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe---
Q 000424 20 VVFFGFHRRMSVTVVGTVEGG------RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--- 90 (1525)
Q Consensus 20 ~Vf~s~~~d~sV~v~dtve~g------k~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--- 90 (1525)
.-|.+.++|++|++|.....+ .+.+... .|+++|.++.|-.+.++++++ |+-|.+||.--++++..+.
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap 824 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP 824 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc
Confidence 346778889999999864321 2334433 499999999999888877664 7899999977666665443
Q ss_pred -cC--CceeecCceeEEEeCCCCEEEEE-eCCCcEEEEeCCCC--CceeeEee--cccCcCeEEEEEcCCCCEEEEEECC
Q 000424 91 -LD--NTIKLLGAGAFAFHPTLEWLFVG-DRRGTLLAWDVSIE--RPSMIGII--QVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 91 -H~--~~V~~~g~~sVaFsPdg~~LaSg-S~DgtIrVWDv~t~--~~s~i~il--~gH~~~VtsIafsPdg~lLaSgS~D 162 (1525)
|. ..|. |+. +-+...+..| +...||+++|.++. ...+. +. .+-+.-+++++..+.|++++.+-..
T Consensus 825 k~~a~~~ik-----cl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k-Vcna~~Pna~~R~iaVa~~GN~lAa~LSn 897 (1034)
T KOG4190|consen 825 KEGAGGNIK-----CLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELK-VCNAPGPNALTRAIAVADKGNKLAAALSN 897 (1034)
T ss_pred ccCCCceeE-----ecc-cCcchheeeeccchhhheeeecccccceeeEE-eccCCCCchheeEEEeccCcchhhHHhcC
Confidence 22 2233 332 2244444444 68999999999962 11111 11 2345668999999999999999999
Q ss_pred CCeeEEEeee
Q 000424 163 GSLQVWKTRV 172 (1525)
Q Consensus 163 gtIkIWDlr~ 172 (1525)
|+|.+-|.|.
T Consensus 898 Gci~~LDaR~ 907 (1034)
T KOG4190|consen 898 GCIAILDARN 907 (1034)
T ss_pred CcEEEEecCC
Confidence 9999999984
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0035 Score=79.13 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=84.2
Q ss_pred EEEcCCCCEEEEEEC----CCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC-Cc
Q 000424 57 LACHPRLPVLYVAYA----DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-RP 131 (1525)
Q Consensus 57 Iaf~P~g~~LaSGs~----DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~-~~ 131 (1525)
+.|||..++|++++. .|.|.|| ..++++.......-.++ +++|||..-.|++|=.-|.+-+|..++. ..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hat-----SLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHAT-----SLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehh-----hhccChHHHHHhhccccceeEEEecCCceee
Confidence 579999999999875 4778887 45666544443222245 8999999888888889999999998853 23
Q ss_pred eeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 132 SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 132 s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
++ ...|..+|..+.|||+|..++|+..=|.|.+|...
T Consensus 95 tv---~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TV---VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ee---ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 33 35799999999999999999999999999999876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.093 Score=64.97 Aligned_cols=150 Identities=8% Similarity=-0.061 Sum_probs=88.1
Q ss_pred cEEEEEEcCCCCEEEEEEeccc--eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEEcCC
Q 000424 8 TEVHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAYNIHT 82 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~--sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-Dg--tIrIWDi~t 82 (1525)
.....+|+|++..+++...... .+.+++. +++ ....+.. +........|+|+|+.++-.+. .+ .|.++|+.+
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl-~~g-~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT-NTK-TLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEEC-CCC-cEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 3456789999998888776543 4444442 333 2333332 3333445689999986655443 33 477778877
Q ss_pred CcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCC---------CcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCC
Q 000424 83 YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR---------GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 153 (1525)
Q Consensus 83 ~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~D---------gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg 153 (1525)
++......... . ...|+|||++|+-.+.. ..|.+.|+.+.....+ ..+. .....+|+|||
T Consensus 311 g~~~rlt~~g~--~-----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L---T~~~-~~~~p~~SPDG 379 (419)
T PRK04043 311 GSVEQVVFHGK--N-----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL---TANG-VNQFPRFSSDG 379 (419)
T ss_pred CCeEeCccCCC--c-----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC---CCCC-CcCCeEECCCC
Confidence 76533222211 2 34899999998876633 2567778775422222 1222 23358899999
Q ss_pred CEEEEEECC-CCeeEEEee
Q 000424 154 RLLVTLCRD-GSLQVWKTR 171 (1525)
Q Consensus 154 ~lLaSgS~D-gtIkIWDlr 171 (1525)
+.++-.+.+ +.-.+|-++
T Consensus 380 ~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CEEEEEEccCCcEEEEEEe
Confidence 987766544 344455443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.022 Score=70.31 Aligned_cols=92 Identities=15% Similarity=0.304 Sum_probs=68.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeC------CCcE
Q 000424 51 KKPIVNLACHPRLPVLYVAYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR------RGTL 121 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaSGs~D---gtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~------DgtI 121 (1525)
+++=+.+-|+|.|++++.++.+ |.|-+||..+.+++..+.-.+.. .++|+|||+|++++.. |+.+
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt------~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT------VFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce------EEEEcCCCcEEEEEeccccEEecCCe
Confidence 4677788999999998887764 88999999999999888833322 3599999999999873 8899
Q ss_pred EEEeCCCCCceeeEeecccCc-CeEEEEEcCCC
Q 000424 122 LAWDVSIERPSMIGIIQVGSQ-PITSVAWLPML 153 (1525)
Q Consensus 122 rVWDv~t~~~s~i~il~gH~~-~VtsIafsPdg 153 (1525)
+||++.. .+. ...|-. ....+.|-|..
T Consensus 385 KiwhytG---~~l--~~~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 385 KIWHYTG---SLL--HEKMFKSELLQVEWRPFN 412 (566)
T ss_pred EEEEecC---cee--ehhhhhHhHhheeeeecC
Confidence 9999983 222 111111 35678888753
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.02 Score=73.65 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=103.0
Q ss_pred EEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCcEEEEEe
Q 000424 20 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA---------DGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 20 ~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~---------DgtIrIWDi~t~k~l~tL~ 90 (1525)
.++|+.+.+++|.+-| .........+.. |++.|..++.+ |+.|++++. |..|++||++..+.+.-+.
T Consensus 188 r~lf~G~t~G~V~LrD-~~s~~~iht~~a-Hs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRD-PNSFETIHTFDA-HSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred cEEEeecccceEEeec-CCcCceeeeeec-cccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 4455666788887665 334455556666 99999888775 888888775 7789999999988887777
Q ss_pred -cCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEeCCCC-Cc--eeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 91 -LDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIE-RP--SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWDv~t~-~~--s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
+.++ . .+.|+|.. ..++++|..|...+-|..+. .+ .+. -.......+..+.+++++..++.|..+|.|
T Consensus 264 ~~~~P-~-----flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~-~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 264 FPYGP-Q-----FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK-MVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cccCc-h-----hhhhcccccceEEEEecccceeeccccccCCCcccee-EEccCCCcceeEEecCCCceEEEecccCcE
Confidence 6555 3 58999964 56788889999999884431 11 111 011234558999999999999999999999
Q ss_pred eEEEee
Q 000424 166 QVWKTR 171 (1525)
Q Consensus 166 kIWDlr 171 (1525)
.+|--+
T Consensus 337 ~~wa~~ 342 (1118)
T KOG1275|consen 337 NLWADR 342 (1118)
T ss_pred eeecCC
Confidence 999743
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.013 Score=67.60 Aligned_cols=121 Identities=14% Similarity=0.242 Sum_probs=82.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEE---e-cC-----CceeecCceeEEEeCC-CCEEEEEeCC
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL---Q-LD-----NTIKLLGAGAFAFHPT-LEWLFVGDRR 118 (1525)
Q Consensus 49 ~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL---~-H~-----~~V~~~g~~sVaFsPd-g~~LaSgS~D 118 (1525)
.|.--|.+|.|+.+...++++ +|-.|.+|++.....-+++ + |. .-|+ +..|||. ...+.-.+..
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVIt-----SaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVIT-----SAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHh-----hcccCHhHcceEEEecCC
Confidence 355568889999888877775 6788999997644332332 2 33 2355 8899995 4566667789
Q ss_pred CcEEEEeCCCC-----Cceee---------EeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeeeecCC
Q 000424 119 GTLLAWDVSIE-----RPSMI---------GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINP 176 (1525)
Q Consensus 119 gtIrVWDv~t~-----~~s~i---------~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~~~~p 176 (1525)
|+|++-|++.. ..... ..+.+-...|..+.|+++|+++++-+. -+|+|||++...+|
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 99999999831 11100 112233456788999999999988654 48999999865443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.15 Score=63.06 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=85.3
Q ss_pred cEEEEEEcCCCCE-EEEEEec--cceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEE-EEECC--CcEEEEEcC
Q 000424 8 TEVHLALTPLQPV-VFFGFHR--RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY-VAYAD--GLIRAYNIH 81 (1525)
Q Consensus 8 ~e~hLA~hP~~p~-Vf~s~~~--d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~La-SGs~D--gtIrIWDi~ 81 (1525)
....-+|+|++.. ++++... +..+.+++. .++. ...+.. ..+.+...+|+|+|+.++ +.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl-~tg~-~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNL-YTGK-KEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEEC-CCCc-EEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 3456789999874 6654443 455656663 3332 233333 456677789999998654 44334 457777887
Q ss_pred CCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-CCC--cEEEEeCCCCCc-eeeEeecccCcCeEEEEEcCCCCEE
Q 000424 82 TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRG--TLLAWDVSIERP-SMIGIIQVGSQPITSVAWLPMLRLL 156 (1525)
Q Consensus 82 t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~Dg--tIrVWDv~t~~~-s~i~il~gH~~~VtsIafsPdg~lL 156 (1525)
+++. ..+. +..... ...|+|||+.|+-.+ ..+ .|.++|+.+... .+. ..+. . ...|+|+|++|
T Consensus 266 ~g~~-~~LT~~~~~d~-----~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~--~--~~~~SPDG~~I 333 (419)
T PRK04043 266 TKTL-TQITNYPGIDV-----NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGK--N--NSSVSTYKNYI 333 (419)
T ss_pred CCcE-EEcccCCCccC-----ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cCCC--c--CceECCCCCEE
Confidence 7764 3444 443334 568999998877665 334 566678775322 222 1121 1 24899999998
Q ss_pred EEEECC
Q 000424 157 VTLCRD 162 (1525)
Q Consensus 157 aSgS~D 162 (1525)
+..+..
T Consensus 334 a~~~~~ 339 (419)
T PRK04043 334 VYSSRE 339 (419)
T ss_pred EEEEcC
Confidence 877654
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.015 Score=73.38 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHHHHHchHHHHHHhhccCCCCccccchHHHHHHHHhhc
Q 000424 1346 RGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLG 1397 (1525)
Q Consensus 1346 e~~e~~~li~icreYilal~ll~El~R~~~l~~~~~~~~~~~R~lELaaYfT 1397 (1525)
--+|++-.|--|-|=+++.+|||-| ++. ++.+ +-.++..|+-+-|.
T Consensus 714 pyeeik~~ILevne~vLse~~iqnL-ik~-lPe~----E~l~~L~e~Kaeye 759 (1102)
T KOG1924|consen 714 PYEEIKNVILEVNEDVLSESMIQNL-IKH-LPEQ----EQLNKLSELKAEYE 759 (1102)
T ss_pred CHHHHHHHHhhccHHHHHHHHHHHH-HHh-CCCH----HHHHHHHHHHHhcc
Confidence 4457888888899999999998877 333 5422 22336666655443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.012 Score=43.97 Aligned_cols=34 Identities=29% Similarity=0.617 Sum_probs=31.0
Q ss_pred eecccCcCeEEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 136 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 136 il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
.+..|...|+++.|++.+.++++++.|+.+++||
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4557889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=5.5 Score=49.24 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCCCeEEEEEcCC--C-CEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEE-----Ee--CCC
Q 000424 50 LKKPIVNLACHPR--L-PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFV-----GD--RRG 119 (1525)
Q Consensus 50 H~~~V~sIaf~P~--g-~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaS-----gS--~Dg 119 (1525)
|.--....-.+|+ | ..++++|+| +..+++++++..+.-.|-+-|+ --.|+|+|++++- ++ ...
T Consensus 35 h~~cM~n~~l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~ritS~lGVvn-----n~kf~pdGrkvaf~rv~~~ss~~ta 107 (668)
T COG4946 35 HEFCMKNYYLNPDIYGDRIIFTCCDD--LWEYSLKDGKPLRITSGLGVVN-----NPKFSPDGRKVAFSRVMLGSSLQTA 107 (668)
T ss_pred hhhhhhhhhcCCcccCcEEEEEechH--HHHhhhccCCeeEEecccceec-----cccCCCCCcEEEEEEEEecCCCccc
Confidence 4333333445665 3 467888776 3334577887776666878888 8899999998874 22 344
Q ss_pred cEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEEC
Q 000424 120 TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 120 tIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~ 161 (1525)
-+.+.+.+.....-+..+ + ...-.-+-|.|+|.+|++...
T Consensus 108 Dly~v~~e~Ge~kRiTyf-G-r~fT~VaG~~~dg~iiV~TD~ 147 (668)
T COG4946 108 DLYVVPSEDGEAKRITYF-G-RRFTRVAGWIPDGEIIVSTDF 147 (668)
T ss_pred cEEEEeCCCCcEEEEEEe-c-cccceeeccCCCCCEEEEecc
Confidence 466666665322222222 3 222334669999999887643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.41 Score=59.79 Aligned_cols=329 Identities=13% Similarity=0.127 Sum_probs=157.1
Q ss_pred cccccccCCccEEEEEeeccCCcceEEEEEecccccccc--cC--CCCcccceeEEeCCCCCcEEEEeCCCCeEEEEEcC
Q 000424 406 PKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLAD--SK--SSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 481 (1525)
Q Consensus 406 pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l~~rn--k~--G~~~~g~~~~fig~~~n~yAvle~~~~~v~I~~~~ 481 (1525)
.....++++++|.++-. ...+.||.. ..... +. . ...+-+|.|. -.++..+ ..|.+|...
T Consensus 71 g~~~vw~~~n~yAv~~~-----~~~I~I~kn---~~~~~~k~i~~~---~~~~~If~G~---LL~~~~~--~~i~~yDw~ 134 (443)
T PF04053_consen 71 GLSFVWSSRNRYAVLES-----SSTIKIYKN---FKNEVVKSIKLP---FSVEKIFGGN---LLGVKSS--DFICFYDWE 134 (443)
T ss_dssp -SEEEE-TSSEEEEE-T-----TS-EEEEET---TEE-TT-----S---S-EEEEE-SS---SEEEEET--TEEEEE-TT
T ss_pred eeEEEEecCccEEEEEC-----CCeEEEEEc---CccccceEEcCC---cccceEEcCc---EEEEECC--CCEEEEEhh
Confidence 34557777888555543 456778763 33333 21 2 1246788432 4555544 269999765
Q ss_pred CchhhhhhcccCCcccCCCccccccccccCCcccccccc-cceeeecCCcceeEEeecCCeEEEEeeccccccccccccc
Q 000424 482 GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESE-VDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSARAGHY 560 (1525)
Q Consensus 482 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~If~~pl~~~l~~~~~~~~i~~~~~~~~yd~~t~~~~~ 560 (1525)
.... +.. ++.. |..|+|.+.+..|.+++..+++++.++.+.+.-...++.
T Consensus 135 ~~~~--------------------i~~--------i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~- 185 (443)
T PF04053_consen 135 TGKL--------------------IRR--------IDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGV- 185 (443)
T ss_dssp T--E--------------------EEE--------ESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB--
T ss_pred Hcce--------------------eeE--------EecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCc-
Confidence 1100 112 2233 799999999888888988888888866554422111222
Q ss_pred cccccccceeeEe-e-ccceEEEEEEcccCCccEEEEEeeeeEEEEccchhhhhccccccCCCCCcceeeeeecCEEEEE
Q 000424 561 LQTKSEGKKSIKL-K-VTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFS 638 (1525)
Q Consensus 561 i~~~~e~~r~i~~-~-~~e~v~~V~Ws~~~~g~~vaI~t~~~i~i~~~~l~~l~~~~~~~~~~~~~IkSg~Wvg~~fIYt 638 (1525)
. ..+++ . ..+.|+...|-++ ++|++- ..+++= +-.|++-+..
T Consensus 186 ------e-~~f~~~~E~~~~IkSg~W~~d-------------~fiYtT---------------~~~lkY-l~~Ge~~~i~ 229 (443)
T PF04053_consen 186 ------E-DAFELIHEISERIKSGCWVED-------------CFIYTT---------------SNHLKY-LVNGETGIIA 229 (443)
T ss_dssp ------G-GGEEEEEEE-S--SEEEEETT-------------EEEEE----------------TTEEEE-EETTEEEEEE
T ss_pred ------h-hceEEEEEecceeEEEEEEcC-------------EEEEEc---------------CCeEEE-EEcCCcceEE
Confidence 1 12222 2 2567888999665 233321 014444 3347888888
Q ss_pred cccccEEEeeC-CceeeEEEecCCceEEEEE-ecC-----cEEEecCCCCCcccCCceeEEeeeccchhhH----HH---
Q 000424 639 TATAISVLGWD-GKVRNILSISMPNAVLVGA-LND-----RLLLANPTEINPRQKKGIEIKSCLVGLLEPL----LI--- 704 (1525)
Q Consensus 639 T~t~l~Yl~~~-G~~~~I~~l~~~~~yLlgy-l~~-----Rl~l~~~~~~~p~~dk~~~I~s~~l~llE~l----l~--- 704 (1525)
+...-.|+++= ++-+.+..+|.. .-+..| ++- +..++ +++.+ .+++.+ ++
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~-~~v~~~~ld~~~~~fk~av~---------~~d~~------~v~~~i~~~~ll~~i 293 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRD-GNVISYELDLSELEFKTAVL---------RGDFE------EVLRMIAASNLLPNI 293 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT---EEEEE--HHHHHHHHHHH---------TT-HH------H-----HHHHTGGG-
T ss_pred EcCCceEEEEEEccCCEEEEEECC-CCEEEEEECHHHHHHHHHHH---------cCChh------hhhhhhhhhhhcccC
Confidence 87777777721 222456666643 111221 210 11111 11110 001100 00
Q ss_pred --h-hhhhhHHHHHhhhHHHHHHHHHhccCCCCCChhHHHHHHcCCCCcccchhhccccCCCCCc----chhhhHHhhcC
Q 000424 705 --G-FATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQ----VLRGIYAIKAL 777 (1525)
Q Consensus 705 --g-~a~~~~~~~~t~~lr~~l~~~~~~~~s~~i~~~~l~~L~~~~~~~~elAl~ls~~~~~~d~----~~rF~LAl~lg 777 (1525)
. -..+.++|++ . |-.+.+.+.- -+++.+=-|+.+ -|-.++|++++.. .+. +.-.++|++.|
T Consensus 294 ~~~~~~~i~~fL~~-~---G~~e~AL~~~----~D~~~rFeLAl~-lg~L~~A~~~a~~---~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 294 PKDQGQSIARFLEK-K---GYPELALQFV----TDPDHRFELALQ-LGNLDIALEIAKE---LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHS----S-HHHHHHHHHH-CT-HHHHHHHCCC---CSTHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHH-C---CCHHHHHhhc----CChHHHhHHHHh-cCCHHHHHHHHHh---cCcHHHHHHHHHHHHHcC
Confidence 0 0001111211 1 1112222211 223333334443 3478999999973 222 23478999999
Q ss_pred CHHHHHHHHHHhhcccCCCCCCC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhhhHHHHHHHHhCC
Q 000424 778 RFSTALSVLKDEFLRSRDYPKCP---PTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLN 847 (1525)
Q Consensus 778 ~l~~A~~ia~~~~~~~~d~~~~~---~~~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~d~~~LllLy~~~gd 847 (1525)
|++.|.+.+.... |+...- -.+....+.+.|++.|...|++.+|-.|+-.+||.+...-|...+|.
T Consensus 362 ~~~lAe~c~~k~~----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 362 NIELAEECYQKAK----DFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp BHHHHHHHHHHCT-----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred CHHHHHHHHHhhc----CccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 9999999987642 211000 00112467788999999999999999999999999888888877775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.018 Score=42.95 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=33.4
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEe
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 125 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWD 125 (1525)
+++...+. |...|+ +++|++++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVT-----SVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCcee-----EEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777 888999 999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.032 Score=67.31 Aligned_cols=212 Identities=14% Similarity=0.122 Sum_probs=135.4
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeec-CCccceEEccCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCc
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE-GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTYA 84 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve-~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~-DgtIrIWDi~t~k 84 (1525)
|...|+. |+..-+..+.+-+..++.|.... .+....+....|-..|.+++.+-++.++.|.+. |..+|++|+.+..
T Consensus 10 d~i~hv~--~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 10 DVITHVF--PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ceeeeEe--eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 4455554 44444555555688888887644 333444444458888999999999999999888 9999999998776
Q ss_pred EEEEEe---cCCceeecCceeEEEeCC-CC-EEEEEe-CCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEE
Q 000424 85 VHYTLQ---LDNTIKLLGAGAFAFHPT-LE-WLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 158 (1525)
Q Consensus 85 ~l~tL~---H~~~V~~~g~~sVaFsPd-g~-~LaSgS-~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaS 158 (1525)
...-++ ..+.+. +..++. .. .++.+. .++.+-|+|-........-.-.-|.++|.++.+.+-+..++|
T Consensus 88 minmiKL~~lPg~a~------wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAE------WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred hhhhcccccCCCceE------EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 554444 222222 222332 12 344443 889999999774322222234569999999999999999999
Q ss_pred EECCCCeeEEEeeeec-CCCCCCCccccccCCCcccccccccccccCCcceecCC----CeeEEEEecCCCeEEEEeccc
Q 000424 159 LCRDGSLQVWKTRVII-NPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLP----RVRALEVHPRLNLAVLLFANF 233 (1525)
Q Consensus 159 gS~DgtIkIWDlr~~~-~p~~~~~~a~~f~p~~Iesldi~~iLs~~gG~~vy~l~----~V~~v~~HP~~Nlial~F~~~ 233 (1525)
....|.|.-|.....+ .|.. .. ++ +. -+....|..+ ...++++.|.++.++
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~-~l--~~-~~--------------K~eTdLy~f~K~Kt~pts~Efsp~g~qis------ 217 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRT-NL--NF-EL--------------KHETDLYGFPKAKTEPTSFEFSPDGAQIS------ 217 (558)
T ss_pred ccccceeEeecCCCcccCccc-cc--cc-cc--------------cccchhhcccccccCccceEEccccCccc------
Confidence 9889999999875211 1110 00 00 10 0000112221 245799999998887
Q ss_pred ccCCcccccccccccCc
Q 000424 234 TGGDNIKNRAAYTREGR 250 (1525)
Q Consensus 234 s~~Dd~~~k~~~~~eg~ 250 (1525)
+-++|.+++......|+
T Consensus 218 tl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccCcccEEEEEEeccch
Confidence 67789999988777763
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.024 Score=71.76 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=10.3
Q ss_pred cCChHHHHHHHHHHh
Q 000424 819 YGQFDSAKETFEVIA 833 (1525)
Q Consensus 819 ~G~~~lAeec~q~~~ 833 (1525)
.+++|-|-+||+.+.
T Consensus 378 r~emDd~~~~f~lL~ 392 (1102)
T KOG1924|consen 378 RAEMDDANEVFELLA 392 (1102)
T ss_pred hhhhccHHHHHHHHH
Confidence 466777777877654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.46 Score=63.57 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=122.6
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEE
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~ 87 (1525)
..+.+.|+-+.-.++++.. .+.+.+++.- ...+-+-+--...|.+++|+|++.+++....++++-+.+. +..++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~-~G~iilvd~e---t~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITA-LGDIILVDPE---TLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEec-CCcEEEEccc---ccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchh
Confidence 3344555556556666653 5566555432 2223333335678999999999999988888888766432 111110
Q ss_pred E--E----e-cCCcee----------------------------------ecCceeEEEeCCCCEEEEEe----CC-CcE
Q 000424 88 T--L----Q-LDNTIK----------------------------------LLGAGAFAFHPTLEWLFVGD----RR-GTL 121 (1525)
Q Consensus 88 t--L----~-H~~~V~----------------------------------~~g~~sVaFsPdg~~LaSgS----~D-gtI 121 (1525)
. + . ....|+ ..+..+|+|--||+++++.. .+ +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0 0 0 000000 01123599999999998743 34 899
Q ss_pred EEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEE---CCCCeeEEEeeeecCCCCCCCccccccCCCcccccccc
Q 000424 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC---RDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPR 198 (1525)
Q Consensus 122 rVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS---~DgtIkIWDlr~~~~p~~~~~~a~~f~p~~Iesldi~~ 198 (1525)
+|||.+....+.. . .-..-=.+++|-|.|.++++-- .|+.|.++.-+...+. ++.++.
T Consensus 225 rV~drEg~Lns~s-e--~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg----------------~f~l~~ 285 (1265)
T KOG1920|consen 225 RVYDREGALNSTS-E--PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG----------------EFVLPF 285 (1265)
T ss_pred EEecccchhhccc-C--cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc----------------ccccCC
Confidence 9999872111110 0 0111224799999999998753 3445655543321110 011111
Q ss_pred cccccCCcceecCCCeeEEEEecCCCeEEEEecccccCCcccccccccccCceeeeeeecccc
Q 000424 199 ILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSAR 261 (1525)
Q Consensus 199 iLs~~gG~~vy~l~~V~~v~~HP~~Nlial~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~ 261 (1525)
-+.. ..+..++|..+..+.|++-+ ..+...++.|....-+|.+.+.++-..
T Consensus 286 p~de---------~~ve~L~Wns~sdiLAv~~~---~~e~~~v~lwt~~NyhWYLKq~l~~~~ 336 (1265)
T KOG1920|consen 286 PLDE---------KEVEELAWNSNSDILAVVTS---NLENSLVQLWTTGNYHWYLKQELQFSQ 336 (1265)
T ss_pred cccc---------cchheeeecCCCCceeeeec---ccccceEEEEEecCeEEEEEEEEeccc
Confidence 1110 12567889888888886553 456666778887777777766655533
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.017 Score=73.30 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=80.4
Q ss_pred EEEEEcCCCCEEEEEEe---ccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEE
Q 000424 10 VHLALTPLQPVVFFGFH---RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~---~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l 86 (1525)
-..+|||..|++.++.- +..+|.++. +.|-+.+-+. ..-.+.+++|||..-.|++|=.-|.+.+|...+.+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa--dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA--DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe--cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 35689999998765543 245555543 2222222111 1233567999999889999999999999998776554
Q ss_pred EEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 87 ~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
.... |..++. .+.||++|..++++..-|.|..|.+.
T Consensus 95 tv~~th~a~i~-----~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQ-----GLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCce-----eEEecCCCCeEEEcCCCceeEEEEee
Confidence 4444 999999 99999999999999999999999665
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.33 Score=58.87 Aligned_cols=108 Identities=11% Similarity=0.007 Sum_probs=73.2
Q ss_pred CCCEEEEEEec----cceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEEcCC
Q 000424 17 LQPVVFFGFHR----RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA----------DGLIRAYNIHT 82 (1525)
Q Consensus 17 ~~p~Vf~s~~~----d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~----------DgtIrIWDi~t 82 (1525)
+..++|+.-.. ..++.++|. +..+....+..+..- +.+ ++|+++.+++++. +..|.+||..+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~-~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDG-EAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CCCEEEEECCcccccCceEEEEEC-CCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 45567766554 267777774 333333333332222 234 9999998766655 78999999999
Q ss_pred CcEEEEEe-cCCceeecC--ceeEEEeCCCCEEEEEe-C-CCcEEEEeCCC
Q 000424 83 YAVHYTLQ-LDNTIKLLG--AGAFAFHPTLEWLFVGD-R-RGTLLAWDVSI 128 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g--~~sVaFsPdg~~LaSgS-~-DgtIrVWDv~t 128 (1525)
.+.+..+. ..++-.+.+ ...++++|||++++... + +..|.|.|+.+
T Consensus 87 ~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 87 HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC
Confidence 99999988 333221111 23678999999999887 4 89999999994
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.13 Score=66.66 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeC---------CCcEEEEeCCCCC
Q 000424 61 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDR---------RGTLLAWDVSIER 130 (1525)
Q Consensus 61 P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~---------DgtIrVWDv~t~~ 130 (1525)
.+++++++|...|+|.+-|..+.+.++++. |.+.+. +|.-.|+.|+++|. |.-|+|||++..+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS-------DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS-------DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeecccccee-------eeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 357899999999999999999999999999 999998 77788999999873 6779999999641
Q ss_pred ceeeEeecccCcCeEEEEEcCCCC-EEEEEECCCCeeEEEeeeecC
Q 000424 131 PSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTRVIIN 175 (1525)
Q Consensus 131 ~s~i~il~gH~~~VtsIafsPdg~-lLaSgS~DgtIkIWDlr~~~~ 175 (1525)
.+. .+..|-.+ .-+.|||... .++.+|..|.+.+-|.-...+
T Consensus 258 -al~-PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 258 -ALS-PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -ccC-CcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 111 12223222 5688999754 677888899999988655444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.64 Score=56.44 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=70.2
Q ss_pred CCCEEEEEECCCcEEEEEcCCC-----cEEEEEe-c--CCceeecCceeEEEeCCCCEEEEEe----------CCCcEEE
Q 000424 62 RLPVLYVAYADGLIRAYNIHTY-----AVHYTLQ-L--DNTIKLLGAGAFAFHPTLEWLFVGD----------RRGTLLA 123 (1525)
Q Consensus 62 ~g~~LaSGs~DgtIrIWDi~t~-----k~l~tL~-H--~~~V~~~g~~sVaFsPdg~~LaSgS----------~DgtIrV 123 (1525)
++.++++... |+|.+.|+... +.+..+. . ....+-.|+.-++++++++.++... ..+.|.+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 6777777665 99999995433 3333333 1 1122222333589999999888753 1257999
Q ss_pred EeCCCCCceeeEeecccCcCeEEEEEcCCCC-EEEEEE-CCCCeeEEEee
Q 000424 124 WDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLC-RDGSLQVWKTR 171 (1525)
Q Consensus 124 WDv~t~~~s~i~il~gH~~~VtsIafsPdg~-lLaSgS-~DgtIkIWDlr 171 (1525)
+|..+ ...+..+.. ...+..++++||++ +|++.+ .+++|.+.|..
T Consensus 284 iD~~t--~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 284 VDAKT--GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EECCC--CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 99985 333322222 34789999999999 877666 57889999975
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.9 Score=49.01 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECC--------CcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEE-eCCCcE
Q 000424 51 KKPIVNLACHPRLPVLYVAYAD--------GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVG-DRRGTL 121 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaSGs~D--------gtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSg-S~DgtI 121 (1525)
....+.+++.|+|.+.++.... +.|..++.. ++.......-...+ .++|+||++.|+.+ +..+.|
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN-----Gi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN-----GIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE-----EEEEETTSSEEEEEETTTTEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc-----ceEECCcchheeeccccccee
Confidence 3457789999999977776654 446666666 45444444445567 89999999987654 578888
Q ss_pred EEEeCCCCCc-----eeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 122 LAWDVSIERP-----SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 122 rVWDv~t~~~-----s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
..+|+..... .....+.......-.+++..+|++.++....+.|.++|.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 8888864211 1111111212236789999999999888888889888754
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.011 Score=73.46 Aligned_cols=154 Identities=12% Similarity=0.188 Sum_probs=93.1
Q ss_pred EEEcCCCCEEEEEEec----cceEEEEEeecC---CccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-
Q 000424 12 LALTPLQPVVFFGFHR----RMSVTVVGTVEG---GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY- 83 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~----d~sV~v~dtve~---gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~- 83 (1525)
|||.+....+++++++ +..+.+|+.-.+ .+....+.++....+.+++|-.+.+++.+|...+.++++|++..
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 5666665444444433 456677775332 11222222223445668888878889999999999999998732
Q ss_pred cEEEEEecCCceeecCceeEEEeC-CCCEEEEEeCCCcEEEEe-CCCCCceeeEeecccC-----cCeEEEEEcCCCC-E
Q 000424 84 AVHYTLQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWD-VSIERPSMIGIIQVGS-----QPITSVAWLPMLR-L 155 (1525)
Q Consensus 84 k~l~tL~H~~~V~~~g~~sVaFsP-dg~~LaSgS~DgtIrVWD-v~t~~~s~i~il~gH~-----~~VtsIafsPdg~-l 155 (1525)
.....+ ....+. .+...| .++|+++-+ |+.|-+|| .+.. .....++ .|. ..+..++|+|... +
T Consensus 188 ~~~~sv-nTk~vq-----G~tVdp~~~nY~cs~~-dg~iAiwD~~rni-enpl~~i-~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 188 DSVSSV-NTKYVQ-----GITVDPFSPNYFCSNS-DGDIAIWDTYRNI-ENPLQII-LRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhhhh-hhhhcc-----cceecCCCCCceeccc-cCceeeccchhhh-ccHHHHH-hhCCCCcccceeeEEeccCCcch
Confidence 111111 233445 566677 667766555 99999999 4431 1111111 122 2388999999654 5
Q ss_pred EEEEECC-CCeeEEEeeeec
Q 000424 156 LVTLCRD-GSLQVWKTRVII 174 (1525)
Q Consensus 156 LaSgS~D-gtIkIWDlr~~~ 174 (1525)
+++++.| ++|+++|++..-
T Consensus 259 la~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred hhhhccCcceEEEecccccC
Confidence 6677765 489999998544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.31 Score=62.36 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=98.1
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCC------------CCEEEEEECCCcEEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR------------LPVLYVAYADGLIRAY 78 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~------------g~~LaSGs~DgtIrIW 78 (1525)
.+.|+|.+ .+.+|+| ..|.++|.+.- .....+.. |+..|+++.|.|- ..++|++...|.|-+|
T Consensus 20 A~Dw~~~G-LiAygsh--slV~VVDs~s~-q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSH--SLVSVVDSRSL-QLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccCccc-eEEEecC--ceEEEEehhhh-hhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 34566655 3344554 45666664332 22333444 8999999999762 2357888888999999
Q ss_pred EcCCCcEEEEEe-cCCceeecCceeEEEeC---CC-CEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcC-C
Q 000424 79 NIHTYAVHYTLQ-LDNTIKLLGAGAFAFHP---TL-EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-M 152 (1525)
Q Consensus 79 Di~t~k~l~tL~-H~~~V~~~g~~sVaFsP---dg-~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP-d 152 (1525)
|...+..+..++ |.+++- .++|-+ +. ..|+.-....+|-+|+..++..-.. .+.......|+.+.| |
T Consensus 95 d~~~~s~~~~l~~~~~~~q-----dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQ-----DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFRVDPFD 167 (1062)
T ss_pred EehhhhhhhhhcCCCcchh-----heeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeeeeCCCC
Confidence 999999888899 888888 888865 44 4566666788999999887522222 112234556788888 5
Q ss_pred CCEEEEEECCCCeeEEEe
Q 000424 153 LRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 153 g~lLaSgS~DgtIkIWDl 170 (1525)
.+.+...+..|.+-+-+.
T Consensus 168 ~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred cceEEEEccCceEEEEec
Confidence 556655555666655554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.2 Score=50.42 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=87.7
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEec
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL 91 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H 91 (1525)
.+|+|.+-.+|++-.....+..++. +++ ....+.. .. ..+++++..+..|+.+..++ +.++|..+++....+..
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~-~~~-~~~~~~~--~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDP-DTG-EVEVIDL--PG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-TTT-EEEEEES--SS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEEC-CCC-eEEEEec--CC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 5788866677777666777766553 222 2222222 22 77788883335555655544 56669988865544441
Q ss_pred ------CCceeecCceeEEEeCCCCEEEEEeCC--------CcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEE
Q 000424 92 ------DNTIKLLGAGAFAFHPTLEWLFVGDRR--------GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV 157 (1525)
Q Consensus 92 ------~~~V~~~g~~sVaFsPdg~~LaSgS~D--------gtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLa 157 (1525)
....+ .+++.|+|+..++.... +.|..++.. . .... ....-...+.|+|+|+++.|.
T Consensus 79 ~~~~~~~~~~N-----D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~-~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 79 PDGGVPFNRPN-----DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTV-VADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp ETTCSCTEEEE-----EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEE-EEEEESSEEEEEEETTSSEEE
T ss_pred cCCCcccCCCc-----eEEEcCCCCEEEEecCCCccccccccceEEECCC-C--eEEE-EecCcccccceEECCcchhee
Confidence 23456 89999999977776533 456666666 2 1111 112345678999999998665
Q ss_pred -EEECCCCeeEEEee
Q 000424 158 -TLCRDGSLQVWKTR 171 (1525)
Q Consensus 158 -SgS~DgtIkIWDlr 171 (1525)
+-+..+.|..+++.
T Consensus 150 v~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 150 VADSFNGRIWRFDLD 164 (246)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred ecccccceeEEEecc
Confidence 56667777766664
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.49 Score=63.33 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=97.3
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEe----------------------ecCCccceEEccC-----------CCC
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGT----------------------VEGGRAPTKIKTD-----------LKK 52 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dt----------------------ve~gk~~t~ik~~-----------H~~ 52 (1525)
.+|.+.++|+|++.++.+... +.++.+... +.-|+..|.+++. |.+
T Consensus 109 d~GI~aaswS~Dee~l~liT~-~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITG-RQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeC-CcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 468889999999998776653 344422111 1113444444420 111
Q ss_pred ---------CeEEEEEcCCCCEEEEE-----ECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-
Q 000424 53 ---------PIVNLACHPRLPVLYVA-----YADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD- 116 (1525)
Q Consensus 53 ---------~V~sIaf~P~g~~LaSG-----s~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS- 116 (1525)
.=.+|.|--+|.+||+. ...+.||+||-. +....+-. ...--. +++|-|.|.++++-.
T Consensus 188 ~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~-----~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQH-----SLSWKPSGSLIAAIQC 261 (1265)
T ss_pred cccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccccccc-----ceeecCCCCeEeeeee
Confidence 12358899999999883 223899999976 43322222 222233 899999999999854
Q ss_pred --CCCcEEEEeCCCC-CceeeEeecccCcCeEEEEEcCCCCEEEE---EECCCCeeEEEee
Q 000424 117 --RRGTLLAWDVSIE-RPSMIGIIQVGSQPITSVAWLPMLRLLVT---LCRDGSLQVWKTR 171 (1525)
Q Consensus 117 --~DgtIrVWDv~t~-~~s~i~il~gH~~~VtsIafsPdg~lLaS---gS~DgtIkIWDlr 171 (1525)
.|+.|.++.-+.. ...+.--+......|..++|+.++..|+. +.....|++|.+.
T Consensus 262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 5668888876632 11111001122234889999999999887 4444459999876
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.14 Score=61.49 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=70.2
Q ss_pred EEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCC-EEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC
Q 000424 75 IRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 152 (1525)
Q Consensus 75 IrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~-~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd 152 (1525)
+++.+..+.+....+. |...|+ .++|+|..+ .+..++.+.+|+|.|+++ ..++..+..| ..+++++|+-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~Ir-----dlafSp~~~GLl~~asl~nkiki~dlet--~~~vssy~a~-~~~wSC~wDld 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIR-----DLAFSPFNEGLLGLASLGNKIKIMDLET--SCVVSSYIAY-NQIWSCCWDLD 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhh-----hhccCccccceeeeeccCceEEEEeccc--ceeeeheecc-CCceeeeeccC
Confidence 6666666666555444 778888 999999776 688899999999999995 4444445576 78999999976
Q ss_pred C-CEEEEEECCCCeeEEEeee
Q 000424 153 L-RLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 153 g-~lLaSgS~DgtIkIWDlr~ 172 (1525)
. ++|..|-..|.|.|+|+|.
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred CcceeEEeccCceEEEEEccC
Confidence 5 5677788899999999984
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.2 Score=63.01 Aligned_cols=73 Identities=16% Similarity=0.310 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 000424 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t 128 (1525)
.-.|.-+.|+|.-+++|.+..+|.|-+..+. .+.+.++. |...++ .+++|.|||+.|+.|-.||+|++.|+.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~----~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT----ASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc----eeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 4457779999999999999999999999887 78888888 665443 2899999999999999999999999995
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.9 Score=44.17 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=66.4
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 000424 54 IVNLACHP---RL-PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 129 (1525)
Q Consensus 54 V~sIaf~P---~g-~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~ 129 (1525)
|+++++.. +| +.|++||.|..||+|+-. ..+..+...+.|. +++-... ..++.+-.+|||-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~-----~L~~~~~-~~F~Y~l~NGTVGvY~~~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVT-----SLCSLGG-GRFAYALANGTVGVYDRSQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceE-----EEEEcCC-CEEEEEecCCEEEEEeCcce
Confidence 55665543 33 479999999999999644 6777887556677 6665555 66888999999999987632
Q ss_pred CceeeEeecccCcCeEEEEEcC-CC---CEEEEEECCCCe
Q 000424 130 RPSMIGIIQVGSQPITSVAWLP-ML---RLLVTLCRDGSL 165 (1525)
Q Consensus 130 ~~s~i~il~gH~~~VtsIafsP-dg---~lLaSgS~DgtI 165 (1525)
.... -+ .+.++++.+.. ++ +-|++|-.+|.|
T Consensus 74 lWRi---KS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 74 LWRI---KS--KNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeee---cc--CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 1121 12 23366666544 32 368888888866
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.8 Score=50.16 Aligned_cols=117 Identities=12% Similarity=0.198 Sum_probs=77.2
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEEe-c-CCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeC
Q 000424 50 LKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ-L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL~-H-~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv 126 (1525)
-.+.+++|+|+|+.. ++++....+.|..+|. +++.+..+. . .+..- .|++..++.++++.-.++.+.+.++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E-----gI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE-----GITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-----EEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-----eEEEECCCEEEEEEcCCCcEEEEEE
Confidence 445699999999755 7788888888888886 578888888 3 35567 8899888887777768999999988
Q ss_pred CCC-----Cce---e-eEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 127 SIE-----RPS---M-IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 127 ~t~-----~~s---~-i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
... ... + .+....++..+-.++|+|.+..|+.+-+..-.+++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 431 111 1 112224566789999999888777777777778888764
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.22 Score=63.41 Aligned_cols=117 Identities=12% Similarity=0.058 Sum_probs=85.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
|...|.=-+++-++.+++.|+.-|.+.+|+-.+++....-. ....+. ....|++..+++.|+..|.|.|+-++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-----~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-----VRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEE-----EEEecchhHhhhhhcCCceEEeehhh
Confidence 55556656677789999999999999999977665432222 223333 56678888888889999999999777
Q ss_pred CC--Cceee--EeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 128 IE--RPSMI--GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 128 t~--~~s~i--~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.. ...+. ..-..|...|++++|++++..+.+|..-|+|..-.+.
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 53 11111 1123478999999999999999999999998876654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.11 Score=62.19 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCC-CEEEEEeCCCcEEEEeC
Q 000424 50 LKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg-~~LaSgS~DgtIrVWDv 126 (1525)
|...|+.++|+|... ++..++.+.+|+|.|+.+..++..+. | ..+. +++|.-|. .+|..|...|.|.|+|+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~w-----SC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIW-----SCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCce-----eeeeccCCcceeEEeccCceEEEEEc
Confidence 778899999999887 78999999999999999999998888 6 7788 99998865 56667779999999999
Q ss_pred CC
Q 000424 127 SI 128 (1525)
Q Consensus 127 ~t 128 (1525)
+.
T Consensus 266 R~ 267 (463)
T KOG1645|consen 266 RQ 267 (463)
T ss_pred cC
Confidence 96
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.56 E-value=1 Score=58.23 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=81.8
Q ss_pred CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCC-----CCEEEEEECCCcEEEEE---cCCCcEEEEE
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR-----LPVLYVAYADGLIRAYN---IHTYAVHYTL 89 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~-----g~~LaSGs~DgtIrIWD---i~t~k~l~tL 89 (1525)
+.++. +++.|++|.+.+.... ...+.+ +.+.++.+|++||+ .+.|++|+.-| +-++. +.....+ .+
T Consensus 83 Gey~a-sCS~DGkv~I~sl~~~-~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l 156 (846)
T KOG2066|consen 83 GEYVA-SCSDDGKVVIGSLFTD-DEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VL 156 (846)
T ss_pred CceEE-EecCCCcEEEeeccCC-ccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-ee
Confidence 34443 3335666655554332 222222 24689999999998 45799999888 66654 2222222 34
Q ss_pred e-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCe------EEEEEcCCCCEEEEEECC
Q 000424 90 Q-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI------TSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 90 ~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~V------tsIafsPdg~lLaSgS~D 162 (1525)
. ..++|. ++.|+ |++|+=++++| |+|+|+.+. +.++...--...+ ..+.|.++.+++ -|- .
T Consensus 157 ~~~eG~I~-----~i~W~--g~lIAWand~G-v~vyd~~~~--~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW-~ 224 (846)
T KOG2066|consen 157 SEGEGPIH-----SIKWR--GNLIAWANDDG-VKVYDTPTR--QRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGW-G 224 (846)
T ss_pred ecCccceE-----EEEec--CcEEEEecCCC-cEEEecccc--ceeeccCCCCCCCCcccCCCceEecCCCeEE-Eec-C
Confidence 4 678899 99886 66788777777 699999852 2221111111222 357788776544 443 3
Q ss_pred CCeeEEEee
Q 000424 163 GSLQVWKTR 171 (1525)
Q Consensus 163 gtIkIWDlr 171 (1525)
.+|+|..++
T Consensus 225 d~v~i~~I~ 233 (846)
T KOG2066|consen 225 DSVKICSIK 233 (846)
T ss_pred CeEEEEEEe
Confidence 489888887
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.027 Score=70.35 Aligned_cols=142 Identities=11% Similarity=0.199 Sum_probs=92.2
Q ss_pred CCEEEEEEeccceEEEEEeecCCcc-ceEEccCCCCCeEEEEEcCCCC-EEEEEEC----CCcEEEEEcCCC--cEEEEE
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRA-PTKIKTDLKKPIVNLACHPRLP-VLYVAYA----DGLIRAYNIHTY--AVHYTL 89 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~-~t~ik~~H~~~V~sIaf~P~g~-~LaSGs~----DgtIrIWDi~t~--k~l~tL 89 (1525)
++.+-+|.. .+.|.+......-.. -..+. .|..+.++++|++-+. +||.|-+ |..++|||+.+. .+..+.
T Consensus 70 ~cIlavG~a-tG~I~l~s~r~~hdSs~E~tp-~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~ 147 (783)
T KOG1008|consen 70 RCILAVGSA-TGNISLLSVRHPHDSSAEVTP-GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP 147 (783)
T ss_pred hhhhhhccc-cCceEEeecCCcccccceecc-cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc
Confidence 455555554 355544433222111 11122 3778899999998654 5666532 677999999876 332222
Q ss_pred e----cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcC-CCCEEEEEECCCC
Q 000424 90 Q----LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDGS 164 (1525)
Q Consensus 90 ~----H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsP-dg~lLaSgS~Dgt 164 (1525)
. ...... +++|-.+.+.+++|...+.+.++|++.. +.......+..|..+..+| .+.|+++-+ |+.
T Consensus 148 ~fs~~~l~gqn-----s~cwlrd~klvlaGm~sr~~~ifdlRqs---~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~ 218 (783)
T KOG1008|consen 148 LFSSSTLDGQN-----SVCWLRDTKLVLAGMTSRSVHIFDLRQS---LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGD 218 (783)
T ss_pred ccccccccCcc-----ccccccCcchhhcccccchhhhhhhhhh---hhhhhhhhhhhcccceecCCCCCceeccc-cCc
Confidence 2 223444 8899988899999999999999999832 2111123455677889999 788888766 999
Q ss_pred eeEEEe
Q 000424 165 LQVWKT 170 (1525)
Q Consensus 165 IkIWDl 170 (1525)
|-+||.
T Consensus 219 iAiwD~ 224 (783)
T KOG1008|consen 219 IAIWDT 224 (783)
T ss_pred eeeccc
Confidence 999993
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.95 Score=58.19 Aligned_cols=104 Identities=8% Similarity=-0.008 Sum_probs=68.8
Q ss_pred CCCeEEEEEcCCCCEEEE-EECCCcEEEEEcCCCcE------------EEEEe-cCCceeecCceeEEEeCCCCEEEEEe
Q 000424 51 KKPIVNLACHPRLPVLYV-AYADGLIRAYNIHTYAV------------HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD 116 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaS-Gs~DgtIrIWDi~t~k~------------l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS 116 (1525)
.+..-.++++|+|+++++ +..+.+|.+.|+.+.+. ..+.. -..++ ..+|.++|.-..|-.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL------HTaFDg~G~aytslf 393 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL------HTAFDGRGNAYTTLF 393 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc------eEEECCCCCEEEeEe
Confidence 355667899999998655 55589999999987653 33334 33333 579999998777777
Q ss_pred CCCcEEEEeCCCC--------CceeeEeec-----ccCcCeEEEEEcCCCCEEEEEE
Q 000424 117 RRGTLLAWDVSIE--------RPSMIGIIQ-----VGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 117 ~DgtIrVWDv~t~--------~~s~i~il~-----gH~~~VtsIafsPdg~lLaSgS 160 (1525)
-|..|-.||+.+. ...++.-+. +|.....+=.-.|+|++|++..
T Consensus 394 ~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 394 LDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 9999999998851 112222222 3332222333467889888864
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.089 Score=59.38 Aligned_cols=158 Identities=14% Similarity=0.152 Sum_probs=87.7
Q ss_pred CcEEEEEEcCCCCEEEEEEeccceEEEEEeecCC-ccceEEccCCCCCeEEEEEcCC-------CCEEEEEECCCcEEEE
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPR-------LPVLYVAYADGLIRAY 78 (1525)
Q Consensus 7 ~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~g-k~~t~ik~~H~~~V~sIaf~P~-------g~~LaSGs~DgtIrIW 78 (1525)
.-.+|+.+||....+-.+.-....-.+..+...+ .....+.. |+-.+++..|+-. +.-+++|..||.|.+|
T Consensus 7 ~~~~~~dk~~~~d~i~~~~t~~~~~~l~~~sa~~~v~~~~~~k-~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~ 85 (238)
T KOG2444|consen 7 ANNFGIDKHPSTDLIAAGLTDGHLHLLRATSADGLVRERKVRK-HKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVF 85 (238)
T ss_pred ccccceeccchhhhhhhcchhhhhhhhccccCCcccccchhhh-hhhhhhhhhhhhcceeecccCceEEeecccceEEEe
Confidence 3467888898877765554322211222322221 22223333 5555555544432 3568889999999999
Q ss_pred EcCCCcEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccC-cCeEEEEEcCCCCE
Q 000424 79 NIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS-QPITSVAWLPMLRL 155 (1525)
Q Consensus 79 Di~t~k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~-~~VtsIafsPdg~l 155 (1525)
+..........- ....+. +.|.--.++.+..+++.|+.||.|++.. ....+....|+ .++........+..
T Consensus 86 n~n~~g~~~d~~~s~~e~i~----~~Ip~~~~~~~~c~~~~dg~ir~~n~~p--~k~~g~~g~h~~~~~e~~ivv~sd~~ 159 (238)
T KOG2444|consen 86 NWNLEGAHSDRVCSGEESID----LGIPNGRDSSLGCVGAQDGRIRACNIKP--NKVLGYVGQHNFESGEELIVVGSDEF 159 (238)
T ss_pred cCCccchHHHhhhcccccce----eccccccccceeEEeccCCceeeecccc--CceeeeeccccCCCcceeEEecCCce
Confidence 876221111111 112222 0222223445777888999999999984 33333344565 45555555556666
Q ss_pred EEEE--ECCCCeeEEEee
Q 000424 156 LVTL--CRDGSLQVWKTR 171 (1525)
Q Consensus 156 LaSg--S~DgtIkIWDlr 171 (1525)
++++ |.|..++.|++.
T Consensus 160 i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 160 LKIADTSHDRVLKKWNVE 177 (238)
T ss_pred EEeeccccchhhhhcchh
Confidence 6666 777777777765
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.14 Score=59.48 Aligned_cols=149 Identities=14% Similarity=0.246 Sum_probs=90.5
Q ss_pred EEEcCCCCEEEEEEeccceEEEEEeecCCccceE--Ecc----CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCc
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK--IKT----DLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~--ik~----~H~~~V~sIaf~P~g~-~LaSGs~DgtIrIWDi~t~k 84 (1525)
|.|..++..++ ++ ++..+.+|..--...+.+. ++- +...-|++..|||... +|...+..|.|++-|++...
T Consensus 178 iS~NsD~et~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISFNSDKETLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecCchheee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 34555555433 33 5777777764211111111 111 1335688899999865 67777888999999988432
Q ss_pred E----EEEEe-------------cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeeccc-------
Q 000424 85 V----HYTLQ-------------LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG------- 140 (1525)
Q Consensus 85 ~----l~tL~-------------H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH------- 140 (1525)
. .+.+. ...+|. .+.|++.|++|++-+. -+|+|||++-. ..++.+..-|
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSIS-----D~kFs~ngryIlsRdy-ltvkiwDvnm~-k~pikTi~~h~~l~~~l 328 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSIS-----DFKFSDNGRYILSRDY-LTVKIWDVNMA-KNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhc-----ceEEcCCCcEEEEecc-ceEEEEecccc-cCCceeechHHHHHHHH
Confidence 1 11111 123344 8999999999987753 58999999853 2222222222
Q ss_pred -----CcCe---EEEEEcCCCCEEEEEECCCCeeEEE
Q 000424 141 -----SQPI---TSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 141 -----~~~V---tsIafsPdg~lLaSgS~DgtIkIWD 169 (1525)
+..| ..+.|+-|...+.|||-....-++-
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 2233 3578888888999998877666664
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.35 Score=61.85 Aligned_cols=112 Identities=13% Similarity=0.313 Sum_probs=85.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCC------------CEEEEEeC
Q 000424 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTL------------EWLFVGDR 117 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg------------~~LaSgS~ 117 (1525)
...-.+++|+|.| ++|-||. ..|.+-|..+.+.+.++. |...|+ .|.|.|-. -.|+++..
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~-----~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVT-----SVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCcccee-----EEEeccCCCchhccCccccceeEEeccc
Confidence 3445678999876 6777775 468889999999999999 999999 99997632 24667778
Q ss_pred CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCC---C-CEEEEEECCCCeeEEEee
Q 000424 118 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM---L-RLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 118 DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPd---g-~lLaSgS~DgtIkIWDlr 171 (1525)
.|.|.+||... ...+..++.|..+|..++|-+. . .+|+.-....++.+|+..
T Consensus 88 ~GrIil~d~~~--~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 88 SGRIILVDFVL--ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred cCcEEEEEehh--hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 99999999984 3333346688899999999763 3 456666667799999765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.99 E-value=9.8 Score=45.51 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=82.3
Q ss_pred EEEcCCCCEEEEEEeccc-eEEEEEeecCCccceEE-------ccCCCCCeEEEEEcCCCCEEEEEEC-----CCcEEEE
Q 000424 12 LALTPLQPVVFFGFHRRM-SVTVVGTVEGGRAPTKI-------KTDLKKPIVNLACHPRLPVLYVAYA-----DGLIRAY 78 (1525)
Q Consensus 12 LA~hP~~p~Vf~s~~~d~-sV~v~dtve~gk~~t~i-------k~~H~~~V~sIaf~P~g~~LaSGs~-----DgtIrIW 78 (1525)
++.||+.+.+++-..+-. -..+++. ..+.....+ +.+| -.|+|+|++|++.=. .|.|-||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~-~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDC-RTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEc-CCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 688996665543333322 2334453 333222222 1224 689999999887533 5889999
Q ss_pred EcC-CCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-------CCCcEEEEeCCCCCceee----------E--ee
Q 000424 79 NIH-TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-------RRGTLLAWDVSIERPSMI----------G--II 137 (1525)
Q Consensus 79 Di~-t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-------~DgtIrVWDv~t~~~s~i----------~--il 137 (1525)
|.. +.+.+..+. |.-.-. .+.+.|||+.|+.+. ++|..++ |+.+..++++ . .+
T Consensus 83 d~~~~~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred ECcCCcEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeec
Confidence 988 778888888 665556 788899998887753 2234443 2332222221 1 12
Q ss_pred --cccCcCeEEEEEcCCCCEEEEEEC
Q 000424 138 --QVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 138 --~gH~~~VtsIafsPdg~lLaSgS~ 161 (1525)
.-|...|+.++++++|..++.+-.
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQY 182 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEec
Confidence 336677888999888876655543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.2 Score=64.45 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=86.2
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeC-CC-cE
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDR-RG-TL 121 (1525)
Q Consensus 45 ~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~-Dg-tI 121 (1525)
+.+.+|...-++++|+-+.++|++|+..|.|+++++.+|......+ |...|+ -|.=+.||..+++.+. .. ..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT-----~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVT-----LVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccc-----cccccCCcceeeeeccccCchH
Confidence 3344688899999999999999999999999999999999888888 999999 8887889988887663 22 56
Q ss_pred EEEeCCCCCceeeEeecccCc-CeEEEEEcCCCCEEEEEECCCCeeEEEeee
Q 000424 122 LAWDVSIERPSMIGIIQVGSQ-PITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 122 rVWDv~t~~~s~i~il~gH~~-~VtsIafsPdg~lLaSgS~DgtIkIWDlr~ 172 (1525)
-+|++.+. .... |+. .-.++.|+.....-+.|..-..+.+||+.+
T Consensus 1170 aLW~~~s~-~~~~-----Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1170 ALWDASST-GGPR-----HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred HHhccccc-cCcc-----ccccccceeehhhhHHHHHhcccccceEEEeccc
Confidence 79998852 2222 221 224677876543333333334678899873
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.44 E-value=2 Score=51.15 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=74.4
Q ss_pred EEEEcCCCC-EEEEEECCCc-EEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEe-----CCCcEEEEeCC
Q 000424 56 NLACHPRLP-VLYVAYADGL-IRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-----RRGTLLAWDVS 127 (1525)
Q Consensus 56 sIaf~P~g~-~LaSGs~Dgt-IrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-----~DgtIrVWDv~ 127 (1525)
.++.||+.. .++.+-.-|+ .-+||..+++....+. ..+... + +.-.||+||++|++.- ..|.|-|||..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF-y--GHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF-Y--GHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE-e--cCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 578899554 5677777776 6679999999998887 322211 1 3678999999999874 46789999999
Q ss_pred CCCceeeEeecccCcCeEEEEEcCCCCEEEEE
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 128 t~~~s~i~il~gH~~~VtsIafsPdg~lLaSg 159 (1525)
. .-..++.+..|.-.-..+.+.|||+.|+.+
T Consensus 86 ~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 86 R-GYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred C-CcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 3 233445566777777889999999888876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.5 Score=52.74 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=76.5
Q ss_pred EEcCCCCE-EEEEEeccc--eEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCE-EEEEECCCcEE--EEEcCCCcEE
Q 000424 13 ALTPLQPV-VFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV-LYVAYADGLIR--AYNIHTYAVH 86 (1525)
Q Consensus 13 A~hP~~p~-Vf~s~~~d~--sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~-LaSGs~DgtIr--IWDi~t~k~l 86 (1525)
+|+|+... .+..+.... .+.+++ .+.+.....+. -.+.-..-+|+|+|+. +++...|+... +.|+.+.. .
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~-l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLD-LNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEe-ccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 45555333 334443333 233333 34444333333 2344455789999985 46666777654 45676665 3
Q ss_pred EEEecCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECC
Q 000424 87 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 87 ~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~D 162 (1525)
..+.+...+. +.=.|+|||++|+-.+ ..|.-.||-+........... .+...-.+-.|+|+|++|+..+.+
T Consensus 275 ~~Lt~~~gi~----~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT-~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 275 PRLTNGFGIN----TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT-FSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred eecccCCccc----cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee-ccCCCCcCccCCCCCCEEEEEecc
Confidence 3355443333 1446899999887655 667666664442211111111 122222267899999999888754
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.51 E-value=2.1 Score=52.48 Aligned_cols=146 Identities=16% Similarity=0.095 Sum_probs=94.6
Q ss_pred CCEEEEEEec-cceEEEEEeecCCccceEEcc-CCCCCeEEEEEcCCCC--EEEE-EECCCcEEEEEcCCCc-EEEEEe-
Q 000424 18 QPVVFFGFHR-RMSVTVVGTVEGGRAPTKIKT-DLKKPIVNLACHPRLP--VLYV-AYADGLIRAYNIHTYA-VHYTLQ- 90 (1525)
Q Consensus 18 ~p~Vf~s~~~-d~sV~v~dtve~gk~~t~ik~-~H~~~V~sIaf~P~g~--~LaS-Gs~DgtIrIWDi~t~k-~l~tL~- 90 (1525)
.-|++++-.. +.++++.+. +.-..+..++. ...+.+..+. +|... .+++ .-.++.|.++|-.... +..-+.
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDv-En~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDV-ENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred cceeEeeccCcccceeEEEe-eccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 4566666444 778877764 33222222222 1233333222 22222 3444 4457899999965433 333344
Q ss_pred -cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCC-C---C----------ceeeEeecccCcCeEEEEEcCCCCE
Q 000424 91 -LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-E---R----------PSMIGIIQVGSQPITSVAWLPMLRL 155 (1525)
Q Consensus 91 -H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t-~---~----------~s~i~il~gH~~~VtsIafsPdg~l 155 (1525)
|..+|. ++.+++-+..++|....|.|.-|.... . . ..+.++.+ ......++.|+|++..
T Consensus 142 lH~sPV~-----~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 142 LHFSPVK-----KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cccCceE-----EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCc
Confidence 999999 999999999999999999999998772 1 0 01111122 2456789999999999
Q ss_pred EEEEECCCCeeEEEee
Q 000424 156 LVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 156 LaSgS~DgtIkIWDlr 171 (1525)
+.+-+.|..|++++++
T Consensus 216 istl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFK 231 (558)
T ss_pred ccccCcccEEEEEEec
Confidence 9999999999999987
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.41 E-value=5 Score=53.45 Aligned_cols=126 Identities=16% Similarity=0.202 Sum_probs=80.3
Q ss_pred ecCCccceEEccCCCCCeEEEEEcC-----CCCEEEEEECCCcEEEEEcCCC--cEEEE-Ee---cCCceeecCceeEEE
Q 000424 37 VEGGRAPTKIKTDLKKPIVNLACHP-----RLPVLYVAYADGLIRAYNIHTY--AVHYT-LQ---LDNTIKLLGAGAFAF 105 (1525)
Q Consensus 37 ve~gk~~t~ik~~H~~~V~sIaf~P-----~g~~LaSGs~DgtIrIWDi~t~--k~l~t-L~---H~~~V~~~g~~sVaF 105 (1525)
++.|+.+.-.+.....+|..++-.. +..--+.|-.+..+..||.+-. +++.. .. ...... |++-
T Consensus 511 Le~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs-----~~aT 585 (794)
T PF08553_consen 511 LERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS-----CFAT 585 (794)
T ss_pred cCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce-----EEEe
Confidence 4556655555553334466665432 1234567778888999997643 33321 11 334555 6665
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 106 HPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 106 sPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+.+| +|++||.+|.||+||-...+ -...+.+-..+|.+|..+.||++++..+ +..+.+++..
T Consensus 586 t~~G-~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 586 TEDG-YIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred cCCc-eEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 5554 79999999999999954211 1112335578999999999999987766 4467778764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.23 E-value=17 Score=43.44 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=33.8
Q ss_pred CCCCCCCCCCccCCchhh------------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 000424 1293 ASPPTSVRPGQVPRGAAA------------SVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDH 1344 (1525)
Q Consensus 1293 ~~~~~~~~p~~~~~~~~~------------~~~lk~gy~~~t~gkf~eAl~~Fr~iL~~~v~~~ 1344 (1525)
+-+++.+-|--.|-+.+- .+.+..|..--.+|.+.+|++.+..+|+++-.++
T Consensus 344 ~~~~r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrAvsdASaGDy~~AiETllTAI~lIKqSr 407 (498)
T KOG4849|consen 344 GLPPRHVNPQMFPLSEAEFEDIMTRNRAISSSAISRAVSDASAGDYKGAIETLLTAIQLIKQSR 407 (498)
T ss_pred CCCcccCCCCCccchHHHHHHHHhhcchhhHHHHHHHhcccccccchhHHHHHHHHHHHHHhhc
Confidence 455667776555533221 2235556666779999999999999998444443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=89.98 E-value=9.1 Score=45.49 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=86.7
Q ss_pred CCEEEEEEec--------c-ceEEEEEeecCC----ccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 000424 18 QPVVFFGFHR--------R-MSVTVVGTVEGG----RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 18 ~p~Vf~s~~~--------d-~sV~v~dtve~g----k~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k 84 (1525)
.+++.+|... + ..+.++...+.. +........++++|++++-- +..|+++. ...|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc
Confidence 5666666552 2 455555544421 22222223467899999876 33455554 4789999998877
Q ss_pred -EEEEEecC--CceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEe-ecccCcCeEEEEEcCCCCEEEEEE
Q 000424 85 -VHYTLQLD--NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGI-IQVGSQPITSVAWLPMLRLLVTLC 160 (1525)
Q Consensus 85 -~l~tL~H~--~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~i-l~gH~~~VtsIafsPdg~lLaSgS 160 (1525)
....-.+. ..+. ++. ..+++++.|+....+.++.++....++.-+ .+.....++++.|-+++..++.+.
T Consensus 119 ~l~~~~~~~~~~~i~-----sl~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 119 TLLKKAFYDSPFYIT-----SLS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp SEEEEEEE-BSSSEE-----EEE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred cchhhheecceEEEE-----EEe--ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 44443333 3444 444 446799999988888877555322223211 123355688899987767999999
Q ss_pred CCCCeeEEEee
Q 000424 161 RDGSLQVWKTR 171 (1525)
Q Consensus 161 ~DgtIkIWDlr 171 (1525)
.+|.+.++...
T Consensus 192 ~~gnl~~l~~~ 202 (321)
T PF03178_consen 192 KDGNLFVLRYN 202 (321)
T ss_dssp TTSEEEEEEE-
T ss_pred CCCeEEEEEEC
Confidence 99999999864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.4 Score=52.97 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=85.1
Q ss_pred CCcEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEE-EECCCc--EEEEEcCC
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV-AYADGL--IRAYNIHT 82 (1525)
Q Consensus 6 ~~~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaS-Gs~Dgt--IrIWDi~t 82 (1525)
...+++-+|+|++..|+++..++.+..++-.-..++..+.+.. -.+.-..=.|+|+|+.++- .+..|. |.++|...
T Consensus 237 ~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 237 NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 3456788999999999999998877766554333333333322 2222235678999997544 444555 44555655
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeC-CCc--EEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEE
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDR-RGT--LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 158 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~-Dgt--IrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaS 158 (1525)
... ..+. ....-. +-.|+|||++|+..+. +|. |-+.|..+... ...+ .+......-+|.|++..+..
T Consensus 316 ~~~-~riT~~~~~~~-----~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~l-t~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 316 SQV-TRLTFSGGGNS-----NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRIL-TSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred Cce-eEeeccCCCCc-----CccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEc-cccccCCCCCcCCCCceEEE
Confidence 554 3333 333333 5678999999988774 344 44444443211 1112 22333445667778777665
Q ss_pred EEC
Q 000424 159 LCR 161 (1525)
Q Consensus 159 gS~ 161 (1525)
.+.
T Consensus 387 ~s~ 389 (425)
T COG0823 387 SSG 389 (425)
T ss_pred ecc
Confidence 543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.45 E-value=15 Score=45.14 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=100.5
Q ss_pred EEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCcEEE
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA---DGLIRAYNIHTYAVHY 87 (1525)
Q Consensus 11 hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~---DgtIrIWDi~t~k~l~ 87 (1525)
.+++.|.+..+|....++..+.++++. ..+....+..++ .-..++++|++..+.++.. +++|.+.|..+.+...
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 578899999999888878888888832 222222222112 4567999999986655544 7899999999999888
Q ss_pred EEe-cCCceeecCceeEEEeCCCCEEEEEe-CCCcEEEEeCCCCCceeeE-e---ecccCcCeEEEEEcCCCCEEEEEEC
Q 000424 88 TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIG-I---IQVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 88 tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS-~DgtIrVWDv~t~~~s~i~-i---l~gH~~~VtsIafsPdg~lLaSgS~ 161 (1525)
+.. -..+ . .+++.|+|+.++... .+++|.+.|.++. .... . ...-...-..+.++|++.++.....
T Consensus 155 ~~~vG~~P-~-----~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 155 TIPVGNTP-T-----GVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEecCCCc-c-----eEEECCCCCeEEEEecCCCeEEEEeCCCc--ceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 865 4444 6 899999999777766 8999999997742 1110 0 0011223357899999996554433
Q ss_pred C---CCeeEEEee
Q 000424 162 D---GSLQVWKTR 171 (1525)
Q Consensus 162 D---gtIkIWDlr 171 (1525)
. +++..-|..
T Consensus 227 ~~~~~~v~~id~~ 239 (381)
T COG3391 227 GSGSNNVLKIDTA 239 (381)
T ss_pred cCCCceEEEEeCC
Confidence 2 466666554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.1 Score=59.74 Aligned_cols=101 Identities=18% Similarity=0.285 Sum_probs=69.9
Q ss_pred CCCEEEEEECCCcEEEEEcCCC-cEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecc
Q 000424 62 RLPVLYVAYADGLIRAYNIHTY-AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 139 (1525)
Q Consensus 62 ~g~~LaSGs~DgtIrIWDi~t~-k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~g 139 (1525)
.+..++.|+..|.|-..|..+. .+...=. ...+|+ +++|+.+|..++.|-.+|.|.+||+.. ......+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vt-----svafn~dg~~l~~G~~~G~V~v~D~~~--~k~l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVT-----SVAFNQDGSLLLAGLGDGHVTVWDMHR--AKILKVITE 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcce-----eeEecCCCceeccccCCCcEEEEEccC--Ccceeeeee
Confidence 4556788888888888776543 1111111 456788 999999999999999999999999994 444444556
Q ss_pred cCcCeEEEE---EcCCCCEEEEEECCCCeeEEEee
Q 000424 140 GSQPITSVA---WLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 140 H~~~VtsIa---fsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
|..+++++- |..++..+.|+...|. +|...
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 666665544 4456666777766665 68764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.75 E-value=16 Score=44.91 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=101.5
Q ss_pred cEEEEEEcCCCCEEEEEEec--cceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCc
Q 000424 8 TEVHLALTPLQPVVFFGFHR--RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YADGLIRAYNIHTYA 84 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~--d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSG-s~DgtIrIWDi~t~k 84 (1525)
....+++.|.+..++++-.. ...+.+++........+ +..+ ..+ ..+++.|++..+.++ ..++.|.+.|..+..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 55789999999999999884 57777777544433333 3332 234 889999999965554 478999999977766
Q ss_pred EEE-----EEe-cCCceeecCceeEEEeCCCCEEEEEeCC---CcEEEEeCCCCCceeeEe--ecccCcCeEEEEEcCCC
Q 000424 85 VHY-----TLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGI--IQVGSQPITSVAWLPML 153 (1525)
Q Consensus 85 ~l~-----tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~D---gtIrVWDv~t~~~s~i~i--l~gH~~~VtsIafsPdg 153 (1525)
..+ .+. +..+ +.+.+.|+|.++...... +++.+.|..+. ..... .-+-. ....+..+|+|
T Consensus 194 v~~~~~~~~~~~~~~P------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~--~v~~~~~~~~~~-~~~~v~~~p~g 264 (381)
T COG3391 194 VVRGSVGSLVGVGTGP------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATG--NVTATDLPVGSG-APRGVAVDPAG 264 (381)
T ss_pred eeccccccccccCCCC------ceEEECCCCCEEEEEeccCCCceEEEEeCCCc--eEEEeccccccC-CCCceeECCCC
Confidence 553 122 2222 368999999977766533 58888888852 22210 11111 34568999999
Q ss_pred CEEEEEEC-CCCeeEEEee
Q 000424 154 RLLVTLCR-DGSLQVWKTR 171 (1525)
Q Consensus 154 ~lLaSgS~-DgtIkIWDlr 171 (1525)
..+..... .+++.+-|.+
T Consensus 265 ~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 265 KAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CEEEEEecCCCeEEEEeCC
Confidence 98877743 4677777765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=88.70 E-value=7.3 Score=47.08 Aligned_cols=96 Identities=25% Similarity=0.250 Sum_probs=62.2
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCC-ceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecc
Q 000424 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDN-TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 139 (1525)
Q Consensus 62 ~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~-~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~g 139 (1525)
.+..+++++.||.+..+|..+++.+.... ... ... +... .+..+++++.||.|.+||..+. +.+..+..
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s-----sp~i--~g~~l~~~~~~G~l~~~d~~tG--~~~~~~~~ 348 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT-----APAV--VGGYLVVGDFEGYLHWLSREDG--SFVARLKT 348 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc-----cCEE--ECCEEEEEeCCCEEEEEECCCC--CEEEEEEc
Confidence 46678888899999999999998776553 221 222 2222 4678999999999999998853 33322333
Q ss_pred cCcCeEE-EEEcCCCCEEEEEECCCCeeEE
Q 000424 140 GSQPITS-VAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 140 H~~~Vts-IafsPdg~lLaSgS~DgtIkIW 168 (1525)
|...+.. -++. + ..|+.++.||.|..|
T Consensus 349 ~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 349 DGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 4433222 2222 3 357788899988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=20 Score=42.58 Aligned_cols=117 Identities=12% Similarity=0.171 Sum_probs=80.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
....|++++|+|+.+.|++-.....--+|=...|+.+.++. --+..- .+.|..++++.++--.++.+.++.+.
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-----~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-----TIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-----HeEEecCCEEEEEehhcceEEEEEEc
Confidence 34459999999999877666666666677667789999887 223334 67888888888887799999888665
Q ss_pred CCCc-----e-ee--EeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 128 IERP-----S-MI--GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 128 t~~~-----s-~i--~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.... . .+ +.....+..--.++|+|....|..+=+-.-+.|+.+.
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 3211 1 11 1111114556789999988888777766667777655
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.34 E-value=6 Score=46.49 Aligned_cols=141 Identities=19% Similarity=0.177 Sum_probs=92.2
Q ss_pred CCEEEEEEec-cceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCE-EEEEECCCc-EEEEEcCCCcEEEEEe-cC-
Q 000424 18 QPVVFFGFHR-RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV-LYVAYADGL-IRAYNIHTYAVHYTLQ-LD- 92 (1525)
Q Consensus 18 ~p~Vf~s~~~-d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~-LaSGs~Dgt-IrIWDi~t~k~l~tL~-H~- 92 (1525)
+|.+..++.. |.+..+....+.+++...+.- ...--.|+|||..+. ++.+-.-|+ ..++|..+.+...++. .+
T Consensus 35 qavfasaf~~~dgs~g~a~~~eaGk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~ 112 (366)
T COG3490 35 QAVFASAFDARDGSFGAATLSEAGKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG 112 (366)
T ss_pred cchheeeeeccCCceeEEEEccCCceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC
Confidence 3444444333 333334444455665554432 344446899998774 666766666 5678988887777766 22
Q ss_pred -CceeecCceeEEEeCCCCEEEEEeC-----CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 93 -NTIKLLGAGAFAFHPTLEWLFVGDR-----RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 93 -~~V~~~g~~sVaFsPdg~~LaSgS~-----DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
...- .=.|||||.||...-. -|.|-|||.+. ..+-++.+..|.-.-..+.|.+||+.++.+. |.|.
T Consensus 113 RHfyG-----HGvfs~dG~~LYATEndfd~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIe 184 (366)
T COG3490 113 RHFYG-----HGVFSPDGRLLYATENDFDPNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIE 184 (366)
T ss_pred ceeec-----ccccCCCCcEEEeecCCCCCCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeC--Ccee
Confidence 2222 4468999999998753 36799999984 3455567778888888999999999998763 4554
Q ss_pred EE
Q 000424 167 VW 168 (1525)
Q Consensus 167 IW 168 (1525)
.-
T Consensus 185 th 186 (366)
T COG3490 185 TH 186 (366)
T ss_pred cc
Confidence 43
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.2 Score=56.49 Aligned_cols=67 Identities=19% Similarity=0.436 Sum_probs=55.2
Q ss_pred eEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeE-EEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 102 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPIT-SVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 102 sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~Vt-sIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.+.|+|.-..|+.+..+|.|.+..++ + +.+. ++.-|...|+ +++|.|||++|+.|=.||+|++-|+.
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlw-tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN-W-QRLW-TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec-c-ceeE-eccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 78999999999999999999887776 2 2222 2334666676 99999999999999999999999975
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=87.89 E-value=7.6 Score=43.15 Aligned_cols=104 Identities=19% Similarity=0.125 Sum_probs=65.5
Q ss_pred CCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecc-c
Q 000424 62 RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV-G 140 (1525)
Q Consensus 62 ~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~g-H 140 (1525)
++..+++++.++.+..||..+++.+..+.....+. ..- ..++..++.++.|+.+..+|..+........... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-----GAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-----SGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-----cee-eecccccccccceeeeEecccCCcceeeeecccccc
Confidence 56778888899999999999999988888433332 111 2345667777788899999988642222100000 0
Q ss_pred Cc-CeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 141 SQ-PITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 141 ~~-~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
.. .........++..++.+..++.|..+|.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecC
Confidence 00 11222233337788888888899888865
|
... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=87.61 E-value=4 Score=54.27 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred CEEEEEEeccceEEEEEeecCCcc-ceEEc--cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCc
Q 000424 19 PVVFFGFHRRMSVTVVGTVEGGRA-PTKIK--TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNT 94 (1525)
Q Consensus 19 p~Vf~s~~~d~sV~v~dtve~gk~-~t~ik--~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~ 94 (1525)
...|+|.+ +..+..||..-.+.+ +..-. ........|++-..+| +||+|+.+|.||+||--..+....|. ...+
T Consensus 543 e~tflGls-~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~p 620 (794)
T PF08553_consen 543 EQTFLGLS-DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDP 620 (794)
T ss_pred CceEEEEC-CCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCC
Confidence 34567774 666666666443321 11000 0123345666665444 78999999999999943333333344 5789
Q ss_pred eeecCceeEEEeCCCCEEEEEeCCCcEEEEeC
Q 000424 95 IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 95 V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv 126 (1525)
|. .|+.+.||+||+..+.. .+.++|+
T Consensus 621 I~-----~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 621 II-----GIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred ee-----EEEecCCCcEEEEeecc-eEEEEEE
Confidence 99 99999999999877654 4555554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.4 Score=58.70 Aligned_cols=73 Identities=15% Similarity=0.316 Sum_probs=57.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 51 ~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
.++|.+++|+-+|..++.|-.+|.|.+||.+.++.++.+. |..++. |+..+.+..++..++++..-|. +|...
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t--~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT--GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc--eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5799999999999999999999999999999999999998 666555 1114455556667888877776 56543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.44 E-value=9.6 Score=50.26 Aligned_cols=122 Identities=15% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCCC-eEEEEEcCCCCEEEEEECCC-----cEEEEEcCC------CcEEEEEe---cCCceeecCceeEEEeCCCCEEEE
Q 000424 50 LKKP-IVNLACHPRLPVLYVAYADG-----LIRAYNIHT------YAVHYTLQ---LDNTIKLLGAGAFAFHPTLEWLFV 114 (1525)
Q Consensus 50 H~~~-V~sIaf~P~g~~LaSGs~Dg-----tIrIWDi~t------~k~l~tL~---H~~~V~~~g~~sVaFsPdg~~LaS 114 (1525)
|+.. |..+-.-.+..+|++-+.|+ .++|||+.. ..++++.+ |..+.+-+.+++++.|.+-+.+++
T Consensus 63 ~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~ 142 (933)
T KOG2114|consen 63 YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC 142 (933)
T ss_pred cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE
Confidence 4444 33333333335666655554 599999752 24453333 444433233459999999999999
Q ss_pred EeCCCcEEEEeCC--CCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 115 GDRRGTLLAWDVS--IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 115 gS~DgtIrVWDv~--t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
|-.+|.|..+.-. ..+..-.........+|+.+.+..++..++-...-..|.+|.+.
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 9999999988432 11111111222346799999999888763333334468888764
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.25 E-value=10 Score=46.47 Aligned_cols=102 Identities=11% Similarity=0.091 Sum_probs=64.0
Q ss_pred EEEEEcCCCCEEEEE-ECC----CcEEEEEcCCCcEEEEEecCCceeecCceeEEEeCCCCEEEEEeCC-----------
Q 000424 55 VNLACHPRLPVLYVA-YAD----GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR----------- 118 (1525)
Q Consensus 55 ~sIaf~P~g~~LaSG-s~D----gtIrIWDi~t~k~l~tL~H~~~V~~~g~~sVaFsPdg~~LaSgS~D----------- 118 (1525)
....++|+++++|.+ +.. .+++++|+.+++.+...-...... .+.|.+|++.|+....|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~-----~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFS-----SVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESE-----EEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccc-----eEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 357899999987765 332 459999999997654321111122 48999999887766532
Q ss_pred CcEEEEeCCCCCce--eeEeecccCcC--eEEEEEcCCCCEEEEEECCC
Q 000424 119 GTLLAWDVSIERPS--MIGIIQVGSQP--ITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 119 gtIrVWDv~t~~~s--~i~il~gH~~~--VtsIafsPdg~lLaSgS~Dg 163 (1525)
..|+.|.+.+.... ++ ++..... ...+..++++++|+..+..+
T Consensus 202 ~~v~~~~~gt~~~~d~lv--fe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELV--FEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEEEEEETTS-GGG-EEE--EC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred cEEEEEECCCChHhCeeE--EeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 23778888764222 33 4443333 56788999999877554443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=3.2 Score=49.84 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 000424 1314 FKTGLAHLEQNQLPDALSCFDEAFL 1338 (1525)
Q Consensus 1314 lk~gy~~~t~gkf~eAl~~Fr~iL~ 1338 (1525)
+..|.-+...|++.+|+..|+.++.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3456667788999999999999876
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=12 Score=48.63 Aligned_cols=150 Identities=12% Similarity=0.030 Sum_probs=83.2
Q ss_pred EEEEEcCCCCEEEEEEe-------ccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEEcC
Q 000424 10 VHLALTPLQPVVFFGFH-------RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-GLIRAYNIH 81 (1525)
Q Consensus 10 ~hLA~hP~~p~Vf~s~~-------~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~D-gtIrIWDi~ 81 (1525)
...+++|++..+.+... .+..+.+++. ++.. ..+.. ......-.|+|+|..+++.+.. ..+++.+-.
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcc-eeeec--CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 46788999888877763 1223333332 2222 22222 1237788999998877776533 233333322
Q ss_pred CCcEEEEE---------ecCCceeecCceeEEEeCCCCEEEEEeCCCcEEE---EeCCCCCceee---EeecccCcCeEE
Q 000424 82 TYAVHYTL---------QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA---WDVSIERPSMI---GIIQVGSQPITS 146 (1525)
Q Consensus 82 t~k~l~tL---------~H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrV---WDv~t~~~s~i---~il~gH~~~Vts 146 (1525)
....++.+ .....|. .+.|||||..++... ++.|.| -........+. ....+-...+.+
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Is-----sl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPIS-----ELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcC-----eEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 21222222 1234677 999999999888766 466665 22222211221 011122233578
Q ss_pred EEEcCCCCEEEEEECCCCeeEEEee
Q 000424 147 VAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 147 IafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
+.|.+++.++ .+..++...+|.+.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEe
Confidence 9999999865 55556667778765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.10 E-value=0.92 Score=58.87 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=68.7
Q ss_pred CcEEEEEe-cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEEC
Q 000424 83 YAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 83 ~k~l~tL~-H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~ 161 (1525)
++.+++|. |....+ |++|+.+.++|+.|+..|.|+++++.++ .+.+...+|.+.|+.+.-+-+|..++|.|.
T Consensus 1091 Fr~w~~frd~~~~fT-----c~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFT-----CIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred cccchhhhcccccee-----eEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeecc
Confidence 35667777 888899 9999999999999999999999999963 344445689999999999999998777654
Q ss_pred CC--CeeEEEeeeec
Q 000424 162 DG--SLQVWKTRVII 174 (1525)
Q Consensus 162 Dg--tIkIWDlr~~~ 174 (1525)
-. -..+|+.....
T Consensus 1164 ~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTG 1178 (1516)
T ss_pred ccCchHHHhcccccc
Confidence 33 47789887543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=85.01 E-value=1.9 Score=37.62 Aligned_cols=34 Identities=15% Similarity=0.409 Sum_probs=30.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 50 H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k 84 (1525)
...+|..++|+|+.+++|.|..||.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 4567999999999999999999999999998 443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=84.94 E-value=19 Score=43.63 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=77.6
Q ss_pred CCEEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEecCCceee
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL 97 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~H~~~V~~ 97 (1525)
+..+|++.. +..+..++. +.++..+.... ......+... ++..+++++.|+.+..+|..+++.+........+.
T Consensus 65 ~~~v~v~~~-~g~v~a~d~-~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~- 138 (377)
T TIGR03300 65 GGKVYAADA-DGTVVALDA-ETGKRLWRVDL-DERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL- 138 (377)
T ss_pred CCEEEEECC-CCeEEEEEc-cCCcEeeeecC-CCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee-
Confidence 445666653 456666663 34454444333 1111122332 36778888899999999999999887766222222
Q ss_pred cCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCe-----EEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 98 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI-----TSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 98 ~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~V-----tsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
..... .+..++.++.|+.|..||..+...... .......+ .+.... +..++.++.++.+..+|.+
T Consensus 139 ---~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~--~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 139 ---SPPLV--ANGLVVVRTNDGRLTALDAATGERLWT--YSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred ---cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeE--EccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEcc
Confidence 01111 345677788899999999986422111 10111000 011111 2366777778888777764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.9 Score=52.70 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=77.9
Q ss_pred cEEEEEEcCCCCEEEEEEeccceEEEEEeecCCccceEEcc-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCc--
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT-DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA-- 84 (1525)
Q Consensus 8 ~e~hLA~hP~~p~Vf~s~~~d~sV~v~dtve~gk~~t~ik~-~H~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k-- 84 (1525)
.-..-++.-+..++.+|.+ .+.+.++....+ ...+++. +-.+.+..+..|+.+.++|.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~~l~~GsS-~G~lyl~~R~~~--~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSS-AGSVYLYNRHTG--EMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred eEEEEEeecCCceEEEecc-cceEEEEecCch--hhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3344556667777777764 677766664332 2222222 123456667789999999999999999998765432
Q ss_pred ---EEEEEe--cCCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCC
Q 000424 85 ---VHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 85 ---~l~tL~--H~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~ 127 (1525)
.+..+. |...|+ +++|++++..+++|...|+|-.-.++
T Consensus 112 ~~~~~t~~d~~~~~rVT-----al~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVT-----ALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred cceeeccccccCCceEE-----EEEecccccEEeecCCCceEEEEEec
Confidence 122223 778899 99999999999999999999877666
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.7 Score=37.83 Aligned_cols=31 Identities=19% Similarity=0.552 Sum_probs=27.9
Q ss_pred CcCeEEEEEcCCCCEEEEEECCCCeeEEEee
Q 000424 141 SQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 141 ~~~VtsIafsPdg~lLaSgS~DgtIkIWDlr 171 (1525)
...|.+++|+|..++||.++.||.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999863
|
|
| >PF13763 DUF4167: Domain of unknown function (DUF4167) | Back alignment and domain information |
|---|
Probab=84.35 E-value=1.8 Score=41.84 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhhhHHHH
Q 000424 803 SQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILD 840 (1525)
Q Consensus 803 ~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~d~~~Lll 840 (1525)
.++.+||++|++.|+..|+--+||-+||++--|-.++-
T Consensus 36 ~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~Ril~ 73 (80)
T PF13763_consen 36 QQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYFRILA 73 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998877763
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=84.22 E-value=33 Score=38.04 Aligned_cols=144 Identities=15% Similarity=0.057 Sum_probs=80.1
Q ss_pred CCEEEEEEeccceEEEEEeecCCccceEE-ccCC--CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe-cCC
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDL--KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDN 93 (1525)
Q Consensus 18 ~p~Vf~s~~~d~sV~v~dtve~gk~~t~i-k~~H--~~~V~sIaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~-H~~ 93 (1525)
+..+++.. .+..+..++ .+.++..+.. .... ............+..++.+..++.|..+|.++++.+.... +..
T Consensus 76 ~~~v~v~~-~~~~l~~~d-~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGT-SDGSLYALD-AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEE-TTSEEEEEE-TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccc-ceeeeEecc-cCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 34455555 344666666 3445555553 2210 0111222333337888888889999999999999988887 332
Q ss_pred cee-----ecCc-eeEEEeCCCCEEEEEeCCCc-EEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCee
Q 000424 94 TIK-----LLGA-GAFAFHPTLEWLFVGDRRGT-LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 166 (1525)
Q Consensus 94 ~V~-----~~g~-~sVaFsPdg~~LaSgS~Dgt-IrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtIk 166 (1525)
... +... +.+.+. ++ .++.++.++. +.+ |..+...... .....+.. ....++..++.++.|+.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~----~~~~~~~~-~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWS----KPISGIYS-LPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEE----ECSS-ECE-CEECCCTEEEEEETTTEEE
T ss_pred CCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEE----ecCCCccC-CceeeCCEEEEEeCCCEEE
Confidence 210 0000 122222 34 7777777775 555 9886422221 11112222 1346777888888999999
Q ss_pred EEEee
Q 000424 167 VWKTR 171 (1525)
Q Consensus 167 IWDlr 171 (1525)
.||++
T Consensus 226 ~~d~~ 230 (238)
T PF13360_consen 226 ALDLK 230 (238)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99976
|
... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=83.12 E-value=11 Score=49.26 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=71.5
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCcEEEEEe--cCCceeecCceeEEEe--CCCCEEEEEeCCCcEEEEeCC-----
Q 000424 57 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFH--PTLEWLFVGDRRGTLLAWDVS----- 127 (1525)
Q Consensus 57 Iaf~P~g~~LaSGs~DgtIrIWDi~t~k~l~tL~--H~~~V~~~g~~sVaFs--Pdg~~LaSgS~DgtIrVWDv~----- 127 (1525)
+..+..++.-++.+.-.++.|||.+.+...+.-. ..+.|. .++|. |+++.+++.|..+.|.++--.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~-----dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIR-----DLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCcee-----eceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 4444455555555555679999999887554444 477888 99984 689999999999999998432
Q ss_pred CCCcee--eE--eecccC-cCeEEEEEcCCCCEEEEEECCCCeeEEEe
Q 000424 128 IERPSM--IG--IIQVGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 128 t~~~s~--i~--il~gH~-~~VtsIafsPdg~lLaSgS~DgtIkIWDl 170 (1525)
...+.. +. -+..|+ ++|.+..|.++|.+++.++ ..+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111111 10 123444 6899999999998776553 46777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=83.05 E-value=21 Score=45.82 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=68.6
Q ss_pred CCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcC-----CCcEEEE--EecCCceeecCceeEEEeCCCCEEEEEe-C
Q 000424 50 LKKPIVNLACHPR----LPVLYVAYADGLIRAYNIH-----TYAVHYT--LQLDNTIKLLGAGAFAFHPTLEWLFVGD-R 117 (1525)
Q Consensus 50 H~~~V~sIaf~P~----g~~LaSGs~DgtIrIWDi~-----t~k~l~t--L~H~~~V~~~g~~sVaFsPdg~~LaSgS-~ 117 (1525)
.-+-|.++.|.|- .+-++.-.....|.+|-+. ..+.+.. .+...++-+- ...+.|||....|..-. .
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvL-pQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVL-PQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccC-CCcccccCCCceEEEEecC
Confidence 3456999999985 3334444556789999865 2222222 2222222211 22456999888776654 3
Q ss_pred CCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECC-CCeeEEEee
Q 000424 118 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD-GSLQVWKTR 171 (1525)
Q Consensus 118 DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~D-gtIkIWDlr 171 (1525)
|-+| +.+++.....+..-+++ .+.|.|.+|.+||+.|+.+-.. =--.|||-.
T Consensus 134 dvSV-~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSV-LPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeE-eeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4333 45665432333322333 5679999999999988766432 234578753
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=81.37 E-value=5.6 Score=35.56 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=43.0
Q ss_pred hhHHhhcCCHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 000424 770 GIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIAD 834 (1525)
Q Consensus 770 F~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~d 834 (1525)
-...++.|+++.|.+++++.-. ..| +...-|..||+..+.+|+++.|.+.|+++-+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~---~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK---QDP------DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC---CST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---HCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567899999999999988752 222 2344467899999999999999999998743
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.27 E-value=18 Score=45.79 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=85.8
Q ss_pred EEEEEEeccceEEEEEeecCCccceEEccCCCCCeEEEEEcCCCC-------EEEEEECCCcEEEEEcCCCc--EEEEEe
Q 000424 20 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-------VLYVAYADGLIRAYNIHTYA--VHYTLQ 90 (1525)
Q Consensus 20 ~Vf~s~~~d~sV~v~dtve~gk~~t~ik~~H~~~V~sIaf~P~g~-------~LaSGs~DgtIrIWDi~t~k--~l~tL~ 90 (1525)
.+|........+.-.+ +|.|+.+.-.+. |.+ |.-+.+.|+.. --++|-.|..|.=||.+-.. .+..-+
T Consensus 347 lil~~~~~~~~l~klD-IE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLD-IERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred eEeeCCCCcCcceeee-cccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3443333333333333 566666655555 444 88888888643 13557788889999976322 222222
Q ss_pred -c----CCceeecCceeEEEeCCCCEEEEEeCCCcEEEEeCCCCCceeeEeecccCcCeEEEEEcCCCCEEEEEECCCCe
Q 000424 91 -L----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 91 -H----~~~V~~~g~~sVaFsPdg~~LaSgS~DgtIrVWDv~t~~~s~i~il~gH~~~VtsIafsPdg~lLaSgS~DgtI 165 (1525)
| ..... |.+-. ...+|+.||.+|.||+||-...... ..+-+-..+|..|..+-+|++|+..+ +..+
T Consensus 424 ~kqy~~k~nFs-----c~aTT-~sG~IvvgS~~GdIRLYdri~~~AK--TAlPgLG~~I~hVdvtadGKwil~Tc-~tyL 494 (644)
T KOG2395|consen 424 SKQYSTKNNFS-----CFATT-ESGYIVVGSLKGDIRLYDRIGRRAK--TALPGLGDAIKHVDVTADGKWILATC-KTYL 494 (644)
T ss_pred ccccccccccc-----eeeec-CCceEEEeecCCcEEeehhhhhhhh--hcccccCCceeeEEeeccCcEEEEec-ccEE
Confidence 2 23334 44433 3458999999999999997421111 12336678999999999999887665 4567
Q ss_pred eEEEee
Q 000424 166 QVWKTR 171 (1525)
Q Consensus 166 kIWDlr 171 (1525)
-+-|+.
T Consensus 495 lLi~t~ 500 (644)
T KOG2395|consen 495 LLIDTL 500 (644)
T ss_pred EEEEEe
Confidence 677665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=80.40 E-value=5.9 Score=50.91 Aligned_cols=79 Identities=18% Similarity=0.094 Sum_probs=61.6
Q ss_pred cccchhhccccCCCCCcchhhhHHhhcCCHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 000424 750 CGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETF 829 (1525)
Q Consensus 750 ~~elAl~ls~~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec~ 829 (1525)
-..+|+++-. -...|--||.-|+++-|...+.... -+.+.+..|+.|+..||..||.-+|+.||
T Consensus 437 takvayeld~------~~iefgaaid~~df~ra~afles~~----------~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 437 TAKVAYELDE------GLIEFGAAIDDGDFDRATAFLESLE----------MGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred ceeEEEEecC------cceecccccccCchHHHHHHHHhhc----------cCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3445555542 2446777999999999988876532 13466888999999999999999999999
Q ss_pred HHHhhhhHHHHHHHH
Q 000424 830 EVIADYESILDLFIC 844 (1525)
Q Consensus 830 q~~~d~~~LllLy~~ 844 (1525)
..++|..+--+|+-.
T Consensus 501 aai~dvak~r~lhd~ 515 (1636)
T KOG3616|consen 501 AAIGDVAKARFLHDI 515 (1636)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888743
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=80.25 E-value=2.6 Score=37.82 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=41.2
Q ss_pred HhhcCCHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 000424 773 AIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADY 835 (1525)
Q Consensus 773 Al~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~d~ 835 (1525)
+++.|+++.|++++++...+.++. .+. |-.||...++.|+++.|++.++++-..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~------~~~---~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN------PEA---RLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS------HHH---HHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 478899999999998876433332 244 446999999999999999999987643
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 320 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-40
Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 15/229 (6%)
Query: 1291 NPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALA----KDHSR 1346
+ + P + + + +A+ F L++ +
Sbjct: 83 WKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQE 142
Query: 1347 GADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHR 1406
A+ + TIC +Y + +++ E R + P + + + ++ + LQ H
Sbjct: 143 IAEAQQLITICREYIVGLSM--ETERKKL---PKETLEQQKRICEMAAYFTHSNLQPVHM 197
Query: 1407 INCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNK---SID 1463
I +RTA+ +++N+ A LL P + + I ++ ++ + D
Sbjct: 198 ILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYD 257
Query: 1464 PLEDPSQFCAATLSRLSTIGYDV-CDLCGAKFSA-LSAPGCIICGMGSI 1510
+P CAA+ + C L GA +S C + + I
Sbjct: 258 M-HNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEI 305
|
| >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Length = 325 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 8e-40
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 23/251 (9%)
Query: 1268 STQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLP 1327
+ P +L A + P VP + G + + N+
Sbjct: 79 PSTPCELPAQLGYVRAYDDTVSEDQILP-------YVPGLDVVNEKMNEGYKNFKLNKPD 131
Query: 1328 DALSCFDEAFLAL----AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAI 1383
A+ CF EA + D +Y + +++ E L++
Sbjct: 132 IAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKE-----GNT 186
Query: 1384 SAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQD 1443
E+A L HR N ++ A+ ++ + +N+ A L + +
Sbjct: 187 VRMLELAAYFTKA---KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243
Query: 1444 E-LRSLIDMCVQRGLSNKSIDPLED-PSQFCAATLSRLSTIGYDV-CDLCGAKF-SALSA 1499
E R + + ID CAAT + V L G+K+
Sbjct: 244 EQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKD 303
Query: 1500 PGCIICGMGSI 1510
I + I
Sbjct: 304 KIDRIAMISKI 314
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 3e-10
Identities = 109/764 (14%), Positives = 215/764 (28%), Gaps = 280/764 (36%)
Query: 152 MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYP- 210
LRL TL V K F E + I+ ++S E P
Sbjct: 64 TLRLFWTLLSKQEEMVQK---------------FVE--EVLRINYKFLMSPIKTEQRQPS 106
Query: 211 LPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKE 270
+ +E RL DN Q+FA +R +
Sbjct: 107 MMTRMYIEQRDRLY-----------NDN-------------QVFAKYNVSR-------LQ 135
Query: 271 KLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLP 330
+L+ L E L+ ++ I + G K+
Sbjct: 136 PY-----------LKLRQALLE--LRPAKNVLI-----------DGVLGSGKTW------ 165
Query: 331 LITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSI 390
+ + VC + ++ + F+ +NL C+ +++
Sbjct: 166 VA-----------LDVCLSYKVQCKMDFK----------IFW---LNL---KNCNSPETV 198
Query: 391 YRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTV 450
L Q+L Y+ + N+ ++ +
Sbjct: 199 LEML--------------------QKLL---YQIDPNWTSRSDHSSNIKLRIHS-----I 230
Query: 451 KGRDAAFIG--PNEDQFAILDD--DKTGLALY-----ILKGVTLQEAADENNGVVDHNQS 501
+ + P E+ +L + + + IL +T + V D +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTR-----FKQVTDFLSA 283
Query: 502 TDTNVGSVQGPLQLMFESEVDRIFST---------PIESTLMFACDGD--QIGM-AKLVQ 549
T S+ + EV + P E + ++ + A+ ++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSIIAESIR 338
Query: 550 GYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLD 609
A ++ + K + ++ + +L+ A E ++ + L
Sbjct: 339 DGL--ATWDNWKHVNCD-KLTTIIESSLNVLEPA--EYRKMFD--------------RLS 379
Query: 610 ILASSSTKFDKG--LPSFR-SLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLV 666
+ F +P+ SL+W +D +++ + V
Sbjct: 380 V-------FPPSAHIPTILLSLIW-----------------FDVIKSDVMVV-------V 408
Query: 667 GALNDRLLLANPTEINPRQKKG--IEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEIL- 723
L+ L+ +Q K I I S + L L E + L +
Sbjct: 409 NKLHKYSLVE-------KQPKESTISIPSIYLELKVKL-----------ENEYALHRSIV 450
Query: 724 --YQITSRFDSLRITPRSLD--ILAKGPPVCGDLAVSLSQAGP-QFTQVLRGIYAIKALR 778
Y I FDS + P LD + L + + R ++ R
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMTLFRMVFL--DFR 501
Query: 779 FSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQF--DSAKETFEVIADYE 836
F K +R S + + +QL Y + D+ +E + +
Sbjct: 502 FLEQ----K---IRHDSTAWNASGS-ILNTLQQL----KFYKPYICDN-DPKYERLVN-- 546
Query: 837 SILDLFICHLNPSAMR-------RLAQRLEEEGANPELRRYCER 873
+ILD F+ + + + R+A E+E E + +R
Sbjct: 547 AILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 78/566 (13%), Positives = 158/566 (27%), Gaps = 190/566 (33%)
Query: 8 TEVHLALTPLQP---VVFFGFHRRM-----SVTVVGTVE----GGRAPTKI--------- 46
++ AL L+P V+ G + + + + KI
Sbjct: 138 LKLRQALLELRPAKNVLIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 47 -KTDLKKPIVNLACHPRLPVLYVAYADGLIRA-YNIHTYAVHYTLQLDNTIKLLGAGAFA 104
+ + + L + ++ + + +D IH + ++ L
Sbjct: 194 SPETVLEMLQKL-LY-QIDPNWTSRSDHSSNIKLRIH--------SIQAELRRL----LK 239
Query: 105 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ---VGSQPITSVAWLPMLRLLVTLCR 161
P L V +V + + ++L+T R
Sbjct: 240 SKPYENCLLVLL--------NVQNAK-----AWNAFNLSC------------KILLT-TR 273
Query: 162 DGSL-----QVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRA 216
+ T + ++ + P E + L + LPR
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT-----LTPD--EVKSL---LLKYLDCRPQDLPR-EV 322
Query: 217 LEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMG 276
L +P + + ++I++ A T + K V +KL+++
Sbjct: 323 LTTNP---RRLSII-----AESIRDGLA-TWDNWKH--------------VNCDKLTTII 359
Query: 277 SSGILADHQLQAQLQEHHLKGHSHLTI----SDIARKAF--LYS--------HFMEG-HA 321
S + + A+ ++ + L++ + I ++ + H
Sbjct: 360 ESSL--NVLEPAEYRKMFDR----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 322 KSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAY 381
S + + P +S + I +LEL LH + VD Y
Sbjct: 414 YSL-VEKQP----KESTISIPSI------YLELKVKLENEYALHRSI----VD-----HY 453
Query: 382 NLCSGADSIYRKLYSTIPGTVEYYPKHMVY-------SKRQQLFLVVY---EF------- 424
N+ + P +Y+ H+ + +R LF +V+ F
Sbjct: 454 NIPKT----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 425 SGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDD------KTGLALY 478
T N QL K +I N+ ++ L + K L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKP---------YICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 479 ILKGVTLQEAA--DENNGVVD--HNQ 500
K L A E+ + + H Q
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 7e-07
Identities = 73/449 (16%), Positives = 128/449 (28%), Gaps = 102/449 (22%)
Query: 3 SISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR 62
++ L LQ ++ + ++ + L
Sbjct: 188 NLKNCNSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 63 LP----VL-YVAYADGLIRAYNIH-----TYAVHYTLQLDNTIKLLGAGAFAFHPTLE-- 110
VL V A A+N+ T T T L + A H +L+
Sbjct: 243 YENCLLVLLNVQNAK-AWNAFNLSCKILLT-----TRFKQVTDFL--SAATTTHISLDHH 294
Query: 111 -WLFVGDRRGTLLA-W-DVSIE--RPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDG- 163
D +LL + D + ++ P L ++ RDG
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-------------PRRLSIIAESIRDGL 341
Query: 164 -SLQVWK-------TRVI---INPNRPPMQANFFEPASI--ESIDIP-RILSQQGGEAVY 209
+ WK T +I +N P F+ S+ S IP +LS + +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 210 PLPRVRALEVHPRLNLAVLLFANFTGG-DNIKNRAAYTREGRKQLFAVLQSARGSSASVL 268
V ++H + +L T +I E L + +
Sbjct: 402 SDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 269 KEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFME------GHAK 322
+ L H + HHLK H + R FL F+E A
Sbjct: 461 SDDLIPPYLDQYFYSH-----IG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 323 SAPISRLPLIT--------IFDSKHQ----LKDIPVCQPFHLELNF-FNRENRVLHYPVR 369
+A S L + I D+ + + I L+F E ++
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---------LDFLPKIEENLICSK-- 563
Query: 370 AFYVDGINLVAYNLCSGADSIYRKLYSTI 398
Y D L+ L + ++I+ + + +
Sbjct: 564 --YTD---LLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 8e-07
Identities = 63/470 (13%), Positives = 129/470 (27%), Gaps = 125/470 (26%)
Query: 492 NNGVVDHNQST---DTNVGSVQGPLQLMFES-EVDRIFSTPIESTLMFACDGDQIGMAKL 547
++ + + + VQ + + E+D I + +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK----------------DAV 61
Query: 548 VQGYRLSARAGHYLQTKSEGKKSIKLKVTEVM------LKVAWQETQRGYVAGVLTTQRV 601
RL + S+ ++ ++ V EV+ L + QR +
Sbjct: 62 SGTLRL------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMT 109
Query: 602 LIVSADLDILASSSTKFDKG-LPSFRSLLWVGPALL-FSTATAISVLGWDGKVRNILSIS 659
+ D L + + F K + + L + ALL A + + G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG------------ 157
Query: 660 MPNA---VLVG-ALND-RLLLANPTEI---NPRQKKGIEIKSCLVGLLEPLLIGFATMQQ 711
+ + + ++ +I N + E +LE L +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE------TVLEMLQKLLYQIDP 211
Query: 712 YFEQKLDLS-------EILYQITSRFDSLRITPRSLDILA--KGPPV-------C----- 750
+ + D S + R + L +L + C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 751 -GDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL--RSRDYPK--C---PPT 802
V+ T + + L S+L ++L R +D P+ P
Sbjct: 272 TRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRR 329
Query: 803 SQLFHRFRQLGYACIK-YGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLE-- 859
+ + G A + + K +I++ + L P+ R++ RL
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDK--------LTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 860 EEGAN-PELRRYCERILRVRSTGWTQG-------IFANFAAESMVPKGPE 901
A+ P + S W + S+V K P+
Sbjct: 382 PPSAHIPT---------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 6e-04
Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 39/191 (20%)
Query: 1309 AASVCFKTGLAHLEQNQLPDALSCFDEAF-LALAKDHSRGADVKAQATICAQYKIAVTLL 1367
A VC L++ Q ++ + F L L +S ++ + Y+I
Sbjct: 167 ALDVC----LSYKVQCKMDF------KIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWT 214
Query: 1368 QEILRLQKVQGPSAAISAKDEMARL---SRHLGSLPL-----QTKHRIN-----CIRTAI 1414
+ S + E+ RL + L L Q N C + +
Sbjct: 215 SRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSC-KILL 270
Query: 1415 -KRNMEVQNYAYAKQMLELLLSKAPAS-KQDELRSLIDMCVQRGLSNKSIDPLEDPSQFC 1472
R +V ++ A + L + DE++SL+ + P + P +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVL 323
Query: 1473 AATLSRLSTIG 1483
RLS I
Sbjct: 324 TTNPRRLSIIA 334
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-07
Identities = 19/127 (14%), Positives = 48/127 (37%), Gaps = 15/127 (11%)
Query: 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE 110
+ I + + L V A + ++++ V T+ + I + +L+
Sbjct: 58 RSAIKEMRFVKGIY-LVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-----SIDTDASLD 111
Query: 111 WLFVGDRRGTLLAWDVSIERPSMIGIIQV---------GSQPITSVAWLPMLRLLVTLCR 161
W+ +G + G+++ +D+ ++ S + + PI S+ W P V +
Sbjct: 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171
Query: 162 DGSLQVW 168
+ +
Sbjct: 172 EYVTLTY 178
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 2e-04
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 54 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF 113
+ A +L +A G + Y V L+ + IK + F +L
Sbjct: 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEM-----RFVKG-IYLV 73
Query: 114 VGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171
V + + T+ + ++ + ITS+ L ++ ++GS+ V+
Sbjct: 74 VINAKDTVYVLS--LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 4e-06
Identities = 12/108 (11%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 66 LYVAYADGLIRAYNIHT--YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 123
+ + +G + +++ Y D+ I + F T+ + G
Sbjct: 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV--VSTVAVDGYFYI 337
Query: 124 WDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171
++ + + + + V + P + + SL+ +R
Sbjct: 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR 385
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 7e-05
Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 13/149 (8%)
Query: 37 VEGGRAPTKIKTDLKKPIVNLACHP---RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDN 93
+ P+ I++++ V+ DG +N A T
Sbjct: 294 LTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353
Query: 94 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 153
L + P + D +L A + + IT++ +
Sbjct: 354 RGSNLVP--VVYCPQIYSYIYSDGASSLRAVPSR--AAFAVHPLVSRETTITAIGVSRLH 409
Query: 154 RLLVTLCRDGSLQVWKTRVIINPNRPPMQ 182
+++ DGSL + N R +
Sbjct: 410 PMVLAGSADGSLIIT------NAARRLLH 432
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 2/110 (1%)
Query: 1204 APNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPA 1263
A Q A P +PPQ + +G+P G P Q + L
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 1264 QVPPSTQPLDLSALGVPNSGD--SGKSPANPASPPTSVRPGQVPRGAAAS 1311
Q+ +T ++ L D + P P T ++ Q P A A
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-05
Identities = 27/179 (15%), Positives = 42/179 (23%), Gaps = 13/179 (7%)
Query: 1158 AQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGL 1217
Q Q + QN P Q A +PP + G P Q P+
Sbjct: 10 PQAQL---QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMG------MPPQGAVPSMGQQQ 60
Query: 1218 PDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSAL 1277
Q+ Q S + P Y +P Q+ Q +
Sbjct: 61 FLTPAQEQLHQQIDQATTS---MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ-QPM 116
Query: 1278 GVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEA 1336
P G + P + P + + T L + +
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 26/185 (14%), Positives = 46/185 (24%), Gaps = 15/185 (8%)
Query: 1125 APASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPP 1184
+ QPA P ++ + GQ +P S+
Sbjct: 8 VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQM--------GMPPQGAVPSMGQQ 59
Query: 1185 GTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGV 1244
+Q+ Q + + N + P+ + PQ+ Q P++ P +
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP---M 116
Query: 1245 PPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQV 1304
+ GQ + P L +P P P P
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYPIDLLT----ELPPPITDLTLPPPPLVIPPERMLVPS 172
Query: 1305 PRGAA 1309
A
Sbjct: 173 ELSNA 177
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 23/132 (17%), Positives = 34/132 (25%), Gaps = 3/132 (2%)
Query: 1180 SLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGL 1239
S Y Q Q A+ P Q P + G Q+ P V S+G
Sbjct: 2 SHHKKRVYPQAQLQYGQN-ATPLQQPAQFMPPQDPA--AAGMSYGQMGMPPQGAVPSMGQ 58
Query: 1240 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1299
P Q + + + +D +A P +P P +
Sbjct: 59 QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Query: 1300 RPGQVPRGAAAS 1311
P A
Sbjct: 119 PAYGQPSAAMGQ 130
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 15/163 (9%)
Query: 45 KIKTDLKKPIVNLACHPRLPVLYVAYA----DGLIRAYNIHTYAVHYTLQLD---NTIKL 97
+ +K PI +LA L +I +++ T++ Q L
Sbjct: 86 GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL 145
Query: 98 LGAG----AFAFHPTLEWLF-VGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 152
AG ++PT+ + V G++ V+ + + +TSV W P
Sbjct: 146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT--ETVKVCATLPSTVAVTSVCWSPK 203
Query: 153 LRLLVTLCRDGSLQVWKTRVIINPNRP-PMQANFFEPASIESI 194
+ L ++G++ + + P P P + +
Sbjct: 204 GKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDV 246
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 65 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL--EWLFVGDRRGTLL 122
L + Y I + T V +++D+ +++ H + E+ D RGT+
Sbjct: 96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYM---YGHNEVNTEYFIWADNRGTIG 152
Query: 123 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171
+ ++ + +S LL DG L V+
Sbjct: 153 FQSYEDDSQYIVHSAKSDV-EYSSGVLHKDSLLLALYSPDGILDVYNLS 200
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1525 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.0 bits (154), Expect = 4e-11
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE 110
+ I + P D R +++ T DN I G + +F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSKSGR 283
Query: 111 WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168
L G WD + G++ ++ + + T D L++W
Sbjct: 284 LLLAGYDDFNCNVWDA--LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 9e-07
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%)
Query: 53 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEW 111
+++L+ P + D + +++ T ++ I A F P
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-----AICFFPNGNA 240
Query: 112 LFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171
G T +D+ ++ M ITSV++ RLL+ D + VW
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 0.002
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 6/74 (8%)
Query: 53 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEW 111
I +++ +L Y D ++ L DN +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS-----CLGVTDDGMA 326
Query: 112 LFVGDRRGTLLAWD 125
+ G L W+
Sbjct: 327 VATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 54 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWL 112
P L D I+ +++ T TL DN ++ FH +++
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR-----GVLFHSGGKFI 262
Query: 113 FVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169
TL WD + + + +TS+ + +VT D +++VW+
Sbjct: 263 LSCADDKTLRVWD--YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (101), Expect = 1e-04
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 18/130 (13%)
Query: 58 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ----------------LDNTIKLLGAG 101
+ ++ D +R + + T L+ + + G+
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209
Query: 102 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161
+L G R T+ WD + + + + V + + +++
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWD--VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 162 DGSLQVWKTR 171
D +L+VW +
Sbjct: 268 DKTLRVWDYK 277
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.2 bits (131), Expect = 3e-08
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 102 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161
A++ + + + ++ S + + ++ + +T V W P +VT
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71
Query: 162 DGSLQVW 168
D + VW
Sbjct: 72 DRNAYVW 78
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.0 bits (94), Expect = 0.001
Identities = 12/142 (8%), Positives = 32/142 (22%), Gaps = 8/142 (5%)
Query: 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFA 104
+ L +PI A + + + + + Y +L + +
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-----GVD 58
Query: 105 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164
+ P + W + +I ++ V W P +
Sbjct: 59 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118
Query: 165 LQVWKTRVIINPNRPPMQANFF 186
+ + +
Sbjct: 119 ISICYFEQENDWWVCKHIKKPI 140
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.6 bits (127), Expect = 1e-07
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 16/144 (11%)
Query: 42 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG 101
+ + T K + ++ + D ++ +N+ + N+
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 102 --------AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL--- 150
+ A E++ G + +L WD P + ++Q + SVA
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGS 362
Query: 151 ---PMLRLLVTLCRDGSLQVWKTR 171
P + T D ++WK +
Sbjct: 363 SLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.6 bits (114), Expect = 4e-06
Identities = 13/126 (10%), Positives = 34/126 (26%), Gaps = 13/126 (10%)
Query: 59 CHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG---AFAFHPTLEWLFVG 115
+ D +R ++ T + L +N + F + + G
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 116 DRRGTLLAWDVSIERP----------SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165
++ W++ + + SVA +++ +D +
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 166 QVWKTR 171
W +
Sbjct: 333 LFWDKK 338
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 104 AFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG-SQPITSVAWLPMLRLLVTLCRD 162
F +W + L AW I Q S + S + +VT D
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGAS----IFQSKESSSVLSCDISVDDKYIVTGSGD 327
Query: 163 GSLQVWK 169
V++
Sbjct: 328 KKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 7e-04
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 57 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 116
L D L+ A+ A + + +++ + +++ G
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL-----SCDISVDDKYIVTGS 325
Query: 117 RRGTLLAWDV 126
++V
Sbjct: 326 GDKKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 15/117 (12%)
Query: 59 CHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 118
R ++ +D IR ++I A L+ + + + G
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV------RCIRFDNKRIVSGAYD 237
Query: 119 GTLLAWDV-------SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168
G + WD+ + + + S + + + +V+ D ++ +W
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIW 292
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 0.001
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 72 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 131
G I + TY + L + +LFV R G + D+ ++ P
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGY-----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95
Query: 132 SMIGIIQVGSQP---ITSVAWLPMLRLL-VTLCRDGSLQVWKT 170
+ + I++GS+ TS + +
Sbjct: 96 TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 138
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.001
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 99 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 158
GA + + G + + V +I + + ++ W LV+
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVK-RPMKIIKALNAHKDGVNNLLWETP-STLVS 274
Query: 159 LCRDGSLQVWK 169
D ++ W
Sbjct: 275 SGADACIKRWN 285
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.6 bits (93), Expect = 0.001
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 67 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126
A ++ ++++ A + L ++ + +++G G L A+D
Sbjct: 254 RAFGAYNVLESFDLEKNASIKRVPLPHSYY-----SVNVSTDGSTVWLGGALGDLAAYDA 308
Query: 127 SIERPSMIGIIQVGSQPITSVAWL 150
E G + + S+A +
Sbjct: 309 --ETLEKKGQVDLPGNASMSLASV 330
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 0.002
Identities = 9/64 (14%), Positives = 24/64 (37%)
Query: 105 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164
+ P L G +++ W+++ I I + + +V+ +D +
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 165 LQVW 168
++ W
Sbjct: 292 IKFW 295
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.002
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 10/130 (7%)
Query: 46 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 105
I T + + +L AD ++ ++I T TLQ N + F
Sbjct: 210 IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS-AVTCLQF 268
Query: 106 HPTLEWLFVGDRRGTLLAWDVSIERP--SMIGIIQVGSQ-PITSVAWLPMLRLLVTLCRD 162
+ D GT+ WD+ +++ + GS + + + R+
Sbjct: 269 NKNFVITSSDD--GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
Query: 163 GS----LQVW 168
G+ L V
Sbjct: 327 GTEETKLLVL 336
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.1 bits (89), Expect = 0.003
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 58 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 117
P + A AD I+ +N+ T V T+ + I+ T + L
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE---DQQLGIIWTKQALVSISA 301
Query: 118 RGTLLAWD 125
G + +
Sbjct: 302 NGFINFVN 309
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1525 | |||
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.91 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.9 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.89 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.89 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.88 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.87 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.87 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.86 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.85 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.85 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.85 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.85 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.84 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.82 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.81 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.78 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.76 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.76 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.76 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.73 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.71 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.71 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.68 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.67 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.65 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.62 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.61 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.6 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.57 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.52 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.39 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.35 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.31 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.27 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.26 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.26 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.24 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.17 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.16 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.11 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.09 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.96 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.79 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.66 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.54 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.39 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.34 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.15 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.13 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.07 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.03 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.24 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.99 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.59 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.33 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 95.78 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.13 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.76 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 93.88 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 92.93 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 92.92 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 88.98 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 88.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 88.06 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 87.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 85.79 |
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=3.7e-21 Score=167.06 Aligned_cols=234 Identities=11% Similarity=0.063 Sum_probs=165.8
Q ss_pred CCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCC--CCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 96899997079997999984163499999641884--6669806899996999993899989999889829999869990
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 7 ~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk--~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~ 84 (1525)
+-...+||+|++.+++++.. +..+.+|+. ++++ ....+++ |.++|++++|+|++.+|++|+.|++|++||+.+..
T Consensus 8 ~pIt~~~~s~dg~~la~~~~-~~~i~iw~~-~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPN-NHEVHIYEK-SGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp SCCCEEEECTTSSEEEEECS-SSEEEEEEE-ETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCEEEEEECCCCCEEEEEEC-CCEEEEEEC-CCCCEEEEEEECC-CCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC
T ss_conf 88389999899999999948-898999988-8997899999558-89988899997999999999799939998620332
Q ss_pred EEEEE--E-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCC--CEEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 99999--5-2785366573009990799899999589909999688898--50157501257684899990899999999
Q 000424 85 VHYTL--Q-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER--PSMIGIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 85 ~l~tL--~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~--~s~i~~l~gH~~~VtsIafsPdg~lLvSg 159 (1525)
....+ . |...|. +++|+|+++++++++.|+++++|++.... .........|...|.+++|+|++.+|+++
T Consensus 85 ~~~~~~~~~~~~~v~-----~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 85 WKPTLVILRINRAAR-----CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EEEEEECCCCSSCEE-----EEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCCCCCCCCCC-----CCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 110012232211000-----111111121100000257630254420334331110010111222111111111110001
Q ss_pred ECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 78997157871121289999975321257873112434400135885111289906999915897289983045568764
Q 000424 160 CRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNI 239 (1525)
Q Consensus 160 S~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~ 239 (1525)
+.|++|++|+.+........... .. .. .......+... ......+..+.|+|+.+.++ +++.|.
T Consensus 160 s~D~~v~v~~~~~~~~~~~~~~~-~~-~~----~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~------s~~~d~ 223 (371)
T d1k8kc_ 160 SCDFKCRIFSAYIKEVEERPAPT-PW-GS----KMPFGELMFES----SSSCGWVHGVCFSANGSRVA------WVSHDS 223 (371)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCB-TT-BS----CCCTTCEEEEC----CCCSSCEEEEEECSSSSEEE------EEETTT
T ss_pred CCCCEEEEEEECCCCCCCCCCCC-CC-CC----CCCCEEEEEEC----CCCCCCEEEEEEECCCCCCC------CCCCCC
T ss_conf 34767999840157643100122-11-11----11110112440----47667478987512332100------001478
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 333000034742544100233478510
Q 000424 240 KNRAAYTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 240 ~~k~~~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
.++.|....++ .+.++.+|...+.+
T Consensus 224 ~i~iwd~~~~~--~~~~~~~~~~~v~s 248 (371)
T d1k8kc_ 224 TVCLADADKKM--AVATLASETLPLLA 248 (371)
T ss_dssp EEEEEEGGGTT--EEEEEECSSCCEEE
T ss_pred CCEEEEEECCC--CEEEEECCCCCCEE
T ss_conf 60588641012--10000014665203
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.90 E-value=4.4e-21 Score=166.46 Aligned_cols=198 Identities=12% Similarity=0.090 Sum_probs=151.5
Q ss_pred CCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-
Q ss_conf 9689999707999799998416349999964188466698068999969999938999899998898299998699909-
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV- 85 (1525)
Q Consensus 7 ~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~- 85 (1525)
+..+.++++|....+.++. ..++.+++. +.+.....+. +|.+.|++++|+|++++|++|+.|++|++||+.+...
T Consensus 18 ~~~~~~a~~~~g~~l~~~~--~~~v~i~~~-~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN--GTSVYTVPV-GSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE--TTEEEEEET-TCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCEEEEEECCCCCEEEEEE--CCEEEEEEC-CCCCEEEEEC-CCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 8759999969989999996--999999999-9996617974-78888899999489996722556736746631011110
Q ss_pred -EEEEE-CCCCEEECCCEEEEEECCCCEEEEEEC--CCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCC-EEEEEE
Q ss_conf -99995-278536657300999079989999958--9909999688898501575012576848999908999-999997
Q 000424 86 -HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDR--RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLC 160 (1525)
Q Consensus 86 -l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~--DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~-lLvSgS 160 (1525)
..++. |...|. +++|+|++.++++++. ++.+++||+.+. .....+.+|...|++++|+|+++ .+++|+
T Consensus 94 ~~~~~~~~~~~v~-----~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~--~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 94 LKTTIPVFSGPVK-----DISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQARAMNSVDFKPSRPFRIISGS 166 (311)
T ss_dssp EEEEEECSSSCEE-----EEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred CCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 0001343357543-----323331110001111221111111111111--111111111111111111211101200011
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 89971578711212899999753212578731124344001358851112899069999158972899830455687643
Q 000424 161 RDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIK 240 (1525)
Q Consensus 161 ~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~ 240 (1525)
.|++|++||.+.... . .....+ -..|+++.|+|+.++++ +++.|..
T Consensus 167 ~d~~i~i~d~~~~~~------~---------------~~~~~~-------~~~i~~v~~~p~~~~l~------~~~~d~~ 212 (311)
T d1nr0a1 167 DDNTVAIFEGPPFKF------K---------------STFGEH-------TKFVHSVRYNPDGSLFA------STGGDGT 212 (311)
T ss_dssp TTSCEEEEETTTBEE------E---------------EEECCC-------SSCEEEEEECTTSSEEE------EEETTSC
T ss_pred CCCCCCCCCCCCCCC------C---------------CCCCCC-------CCCCCCCCCCCCCCCCC------CCCCCCC
T ss_conf 221111111111111------1---------------111111-------11111123476422121------1111111
Q ss_pred CCCCCCCCC
Q ss_conf 330000347
Q 000424 241 NRAAYTREG 249 (1525)
Q Consensus 241 ~k~~~~~eg 249 (1525)
++.|..+++
T Consensus 213 v~~~d~~~~ 221 (311)
T d1nr0a1 213 IVLYNGVDG 221 (311)
T ss_dssp EEEEETTTC
T ss_pred CCCCCCCCC
T ss_conf 100012446
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.1e-20 Score=157.23 Aligned_cols=161 Identities=19% Similarity=0.285 Sum_probs=110.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC---EEEEEE---CCCCEEECCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf 899996999993899989999889829999869990---999995---27853665730099907998999995899099
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA---VHYTLQ---LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 122 (1525)
Q Consensus 49 ~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~---~l~tL~---H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIk 122 (1525)
+|..+|.+++|+|++++|++|+ |+.|++||+.+.. ....+. |...|+ +++|+|++++|++++.|++|+
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~-----~v~~s~dg~~l~s~~~dg~i~ 122 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-----SCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEE-----EEEECTTSSEEEEEESSSEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEE-----EEEECCCCCEEEEEECCCCCC
T ss_conf 9999289999989999999997-9988997736776331168764048899689-----999867998898861233211
Q ss_pred EEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99688898501575012576848999908999999997899715787112128999997532125787311243440013
Q 000424 123 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ 202 (1525)
Q Consensus 123 VWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~ 202 (1525)
+||+..........+..|...+.++.|+|++.++++++.|+.|++|+++.... . .....
T Consensus 123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~------~---------------~~~~~ 181 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL------V---------------RQFQG 181 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------E---------------EEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------C---------------CCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111------1---------------11111
Q ss_pred CCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 58851112899069999158972899830455687643330000347
Q 000424 203 QGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 203 ~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg 249 (1525)
+ ...++++.|++..+.++ .++.|..++.|..+++
T Consensus 182 ~-------~~~v~~l~~s~~~~~~~------~~~~d~~v~i~d~~~~ 215 (337)
T d1gxra_ 182 H-------TDGASCIDISNDGTKLW------TGGLDNTVRSWDLREG 215 (337)
T ss_dssp C-------SSCEEEEEECTTSSEEE------EEETTSEEEEEETTTT
T ss_pred C-------CCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCC
T ss_conf 1-------11111012344432112------2356655321111110
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.89 E-value=2.3e-20 Score=161.27 Aligned_cols=175 Identities=12% Similarity=0.107 Sum_probs=129.1
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 99996999993899989999889829999869990999995-27853665730099907998999995899099996888
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 128 (1525)
Q Consensus 50 H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s 128 (1525)
+.+.+..++++|++..|+.+. ++.|.+||+.+......+. |.+.|. +++|+|++++|++|+.|++|++||+..
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~-----~~~~sp~g~~latg~~dg~i~iwd~~~ 89 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTT-----VAKTSPSGYYCASGDVHGNVRIWDTTQ 89 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEE-----EEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEE-----EEEEECCCCEEECCCCCCEEEEEEEEC
T ss_conf 788759999969989999996-99999999999966179747888889-----999948999672255673674663101
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9850157501257684899990899999999789--97157871121289999975321257873112434400135885
Q 000424 129 ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD--GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGE 206 (1525)
Q Consensus 129 ~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~D--gtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~ 206 (1525)
........+..|...|.+++|+|++.++++++.+ ..+++|+++..... ..+..+
T Consensus 90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~---------------------~~l~~h--- 145 (311)
T d1nr0a1 90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN---------------------GNLTGQ--- 145 (311)
T ss_dssp TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC---------------------BCCCCC---
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------------CCCCCC---
T ss_conf 11100001343357543323331110001111221111111111111111---------------------111111---
Q ss_pred CEECCCCEEEEEEECCCCE-EEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 1112899069999158972-89983045568764333000034742544100233478510
Q 000424 207 AVYPLPRVRALEVHPRLNL-AVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 207 ~vy~l~~V~~v~~HP~~Nl-iai~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
...|.++.|||+.+. ++ ++++|..++.|..+.++ ...+++.|...+.+
T Consensus 146 ----~~~v~~v~~~~~~~~~l~------sgs~d~~i~i~d~~~~~--~~~~~~~~~~~i~~ 194 (311)
T d1nr0a1 146 ----ARAMNSVDFKPSRPFRII------SGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHS 194 (311)
T ss_dssp ----SSCEEEEEECSSSSCEEE------EEETTSCEEEEETTTBE--EEEEECCCSSCEEE
T ss_pred ----CCCCCCCCCCCCCEEEEC------CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
T ss_conf ----111111111211101200------01122111111111111--11111111111111
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=4.3e-19 Score=151.91 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=127.2
Q ss_pred CEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCE
Q ss_conf 669806899996999993899989999889829999869990999995-2785366573009990799899999589909
Q 000424 43 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121 (1525)
Q Consensus 43 ~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtI 121 (1525)
...+++ |.++|++++|+|++++|++|+.||+|++||+.+++.+.++. |...|. +++|+|++.++++++.|+++
T Consensus 48 ~~tL~G-H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-----~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 48 RRTLRG-HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-----TCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp EEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-----EEEECTTSSEEEEEETTCCE
T ss_pred EEEECC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEE-----EEEEECCCEEEEEECCCCEE
T ss_conf 279888-789888999989999999997899555631021025799724653377-----56760121144310133201
Q ss_pred EEEECCCC--CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99968889--8501575012576848999908999999997899715787112128999997532125787311243440
Q 000424 122 LAWDVSIE--RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRI 199 (1525)
Q Consensus 122 kVWDl~s~--~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~i 199 (1525)
++|+.... .......+.+|.....+..+.. ...+.....|.+...|....... . . .
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~-~--------------~ 179 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQ------T-T--------------T 179 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEE------E-E--------------E
T ss_pred ECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC------C-C--------------C
T ss_conf 01332222122211100135421101111111-11111112445432001232211------1-1--------------1
Q ss_pred CCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 0135885111289906999915897289983045568764333000034742544100233478510
Q 000424 200 LSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 200 Ls~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
. ......+....+++..++.+ ++..|..++.|..++++ ...++.+|.+.+.+
T Consensus 180 ~-------~~~~~~~~~~~~~~~~~~~~------~~~~d~~v~i~d~~~~~--~~~~~~~h~~~i~~ 231 (340)
T d1tbga_ 180 F-------TGHTGDVMSLSLAPDTRLFV------SGACDASAKLWDVREGM--CRQTFTGHESDINA 231 (340)
T ss_dssp E-------ECCSSCEEEEEECTTSSEEE------EEETTTEEEEEETTTTE--EEEEECCCSSCEEE
T ss_pred C-------CCCCEEEEEECCCCCCCEEE------EEECCCEEEEEECCCCC--EEEEEECCCCCEEE
T ss_conf 2-------33101576300124421268------76057369999999994--88999578898589
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=2.4e-19 Score=153.81 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=101.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-------------------CCCCEEECCCEEEEEECCC
Q ss_conf 899996999993899989999889829999869990999995-------------------2785366573009990799
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-------------------LDNTIKLLGAGAFAFHPTL 109 (1525)
Q Consensus 49 ~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-------------------H~~~V~l~~~~sVaFsPdg 109 (1525)
+|.+.|+|++|+|++.+|++|+ |++|++||+.+++.+.++. |...|+ +++|+|++
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-----~l~~s~~~ 133 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-----SVCFSPDG 133 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEE-----EEEECTTS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE-----EEEECCCC
T ss_conf 9999689999999999999994-99489998136405766316654432443211101467789889-----99988999
Q ss_pred CEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 899999589909999688898501575012576848999908999999997899715787112
Q 000424 110 EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 110 ~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~ 172 (1525)
.+|++++.|++|++||... ........+|...|.++.|++++..+++++.++.+++||.+.
T Consensus 134 ~~l~s~~~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 194 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 194 (388)
T ss_dssp SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 8012134441111211111--111111111111111101111111111222101565410111
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.87 E-value=6e-20 Score=158.18 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=127.9
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 99996999993899989999889829999869990--999995-278536657300999079989999958990999968
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA--VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 50 H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~--~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl 126 (1525)
+.+||+|++|+|++.++++|+.|+.|++||..+.+ ...++. |..+|+ +++|+|++++|++++.|++|++||+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~-----~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-----GVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-----EEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEE-----EEEECCCCCEEEEEECCCEEEEEEE
T ss_conf 99883899998999999999488989999888997899999558899888-----9999799999999979993999862
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88985015750125768489999089999999978997157871121289999975321257873112434400135885
Q 000424 127 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGE 206 (1525)
Q Consensus 127 ~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~ 206 (1525)
.+........+.+|...|+++.|+|++++|++++.|+++++|++..... .. .. ......+
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-----~~-~~-----------~~~~~~~--- 140 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WW-VC-----------KHIKKPI--- 140 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EE-EE-----------EEECTTC---
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC-----CC-CC-----------CCCCCCC---
T ss_conf 0332110012232211000111111121100000257630254420334-----33-11-----------1001011---
Q ss_pred CEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 111289906999915897289983045568764333000034
Q 000424 207 AVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTRE 248 (1525)
Q Consensus 207 ~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~e 248 (1525)
-..|.++.|||+...++ +++.|..++.|....
T Consensus 141 ----~~~v~~v~~~p~~~~l~------s~s~D~~v~v~~~~~ 172 (371)
T d1k8kc_ 141 ----RSTVLSLDWHPNSVLLA------AGSCDFKCRIFSAYI 172 (371)
T ss_dssp ----CSCEEEEEECTTSSEEE------EEETTSCEEEEECCC
T ss_pred ----CCCCCCCCCCCCCCCEE------CCCCCCEEEEEEECC
T ss_conf ----12221111111111100------013476799984015
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=7.4e-18 Score=142.89 Aligned_cols=205 Identities=15% Similarity=0.175 Sum_probs=145.5
Q ss_pred CCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEE-----------------CCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 9689999707999799998416349999964188466698-----------------06899996999993899989999
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-----------------KTDLKKPIVNLACHPRLPVLYVA 69 (1525)
Q Consensus 7 ~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tki-----------------k~~H~~~V~sIafsP~g~~LaSG 69 (1525)
+.-..|+|+|++.++.+|. +.++++|+..++ .....+ ...|...|++++|+|++++|++|
T Consensus 63 ~~V~~l~fs~dg~~lasg~--d~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC--NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC--BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEE--CCEEEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEC
T ss_conf 9689999999999999994--994899981364-0576631665443244321110146778988999988999801213
Q ss_pred ECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 889829999869990999995-2785366573009990799899999589909999688898501575012576848999
Q 000424 70 YADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVA 148 (1525)
Q Consensus 70 s~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIa 148 (1525)
+.|+.|++||...++....+. |...|. ++.|++++..+++++.++.+++||..+. ........ .....++.
T Consensus 140 ~~dg~v~i~~~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~-~~~~~~~~ 211 (388)
T d1erja_ 140 AEDRLIRIWDIENRKIVMILQGHEQDIY-----SLDYFPSGDKLVSGSGDRTVRIWDLRTG--QCSLTLSI-EDGVTTVA 211 (388)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEE-----EEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEEC-SSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCEEEEEEECCCC--CCCCCCCC-CCCCCCCC
T ss_conf 4441111211111111111111111111-----1011111111112221015654101111--11000012-45442112
Q ss_pred ECC-CCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEE
Q ss_conf 908-9999999978997157871121289999975321257873112434400135885111289906999915897289
Q 000424 149 WLP-MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 227 (1525)
Q Consensus 149 fsP-dg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nlia 227 (1525)
|++ ++.+|++++.|+.|++||.+..... ..+ ... ...... ....|.++.|+|+.+.++
T Consensus 212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~------~~~-~~~-------~~~~~~-------h~~~v~~l~~s~~~~~l~ 270 (388)
T d1erja_ 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLV------ERL-DSE-------NESGTG-------HKDSVYSVVFTRDGQSVV 270 (388)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEE------EEE-C-------------CC-------CSSCEEEEEECTTSSEEE
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCCC------EEE-CCC-------CCCCCC-------CCCCEEEEEECCCCCEEE
T ss_conf 36887875899738981999634557300------010-244-------333457-------789878999979999999
Q ss_pred EEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9830455687643330000347
Q 000424 228 LLFANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 228 i~F~~~s~~Dd~~~k~~~~~eg 249 (1525)
+++.|..++.|..+.+
T Consensus 271 ------s~~~d~~i~iwd~~~~ 286 (388)
T d1erja_ 271 ------SGSLDRSVKLWNLQNA 286 (388)
T ss_dssp ------EEETTSEEEEEEC---
T ss_pred ------EEECCCCEEEEECCCC
T ss_conf ------9978992898751577
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=5.5e-19 Score=151.13 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=169.8
Q ss_pred CEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCC-CEEECCCCCCCEEEEEECCC--CCEEEEEECCCCEEEEECCCCC
Q ss_conf 68999970799979999841634999996418846-66980689999699999389--9989999889829999869990
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA-PTKIKTDLKKPIVNLACHPR--LPVLYVAYADGLIRAYNIHTYA 84 (1525)
Q Consensus 8 ~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~-~tkik~~H~~~V~sIafsP~--g~~LaSGs~DgtIkIWDi~t~~ 84 (1525)
.-.+++|+|....+.++..++..+..++....... ...+.+.|..+|++++|+|. +.++++|+.||+|++||+....
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768888765028990789998899998117999799999489977985405886
Q ss_pred --------EEEEEE-CCCCEEECCCEEEEEECCCCEEEEEE--CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf --------999995-27853665730099907998999995--8990999968889850157501257684899990899
Q 000424 85 --------VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD--RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 153 (1525)
Q Consensus 85 --------~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS--~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg 153 (1525)
....+. |..+|. +++|++++.++++++ .++.+++|++.+ ...+..+.+|...|++++|+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~-----~v~~s~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~ 171 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPIS-----DISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVSGHSQRINACHLKQSR 171 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEE-----EEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECCSCSSCEEEEEECSSS
T ss_pred CEEEEECCCCCCCCCCCCCEE-----EEEECCCCCCCCEEECCCCCEEEEEEECC--CCCCEEEEECCCCCCCCCCCCCC
T ss_conf 215651002541136567377-----99989998822010012440478885023--31100120012343211112343
Q ss_pred CE-EEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECC-CCEEEEEEC
Q ss_conf 99-9999789971578711212899999753212578731124344001358851112899069999158-972899830
Q 000424 154 RL-LVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPR-LNLAVLLFA 231 (1525)
Q Consensus 154 ~l-LvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~-~Nliai~F~ 231 (1525)
++ +++++.|+.+++||.+..... ... . ....+ ...|.++.|+|+ ..+++
T Consensus 172 ~~~~~~~~~d~~v~~~d~~~~~~~------~~~--~----------~~~~~-------~~~v~~v~~~pd~~~~l~---- 222 (325)
T d1pgua1 172 PMRSMTVGDDGSVVFYQGPPFKFS------ASD--R----------THHKQ-------GSFVRDVEFSPDSGEFVI---- 222 (325)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEE------EEE--C----------SSSCT-------TCCEEEEEECSTTCCEEE----
T ss_pred CCEEEEEECCCCCCCCCCCCCCCC------EEC--C----------CCCCC-------CCCCEEEEECCCCCEECC----
T ss_conf 206888621112211112211000------000--0----------01577-------775277630345310000----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHCE
Q ss_conf 45568764333000034742544100233478510011001247885420035889988752115897236002532100
Q 000424 232 NFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAF 311 (1525)
Q Consensus 232 ~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~k~~~ 311 (1525)
+++.|..++.|..+.++ .+.++++|...+.++.....++.|.. ++.. ..|+.++|||+.....
T Consensus 223 --s~~~d~~i~iwd~~~~~--~~~~l~~~~~~v~~~~~s~~~~dg~~-l~s~------------s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 223 --TVGSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWLDSQK-FATV------------GADATIRVWDVTTSKC 285 (325)
T ss_dssp --EEETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEESSSSE-EEEE------------ETTSEEEEEETTTTEE
T ss_pred --CCCCCCCEEEEEECCCC--CCCCCCCCCCCCCCCEEEEECCCCCE-EEEE------------ECCCEEEEEECCCCCE
T ss_conf --11233210134300122--21111111111111000000368999-9999------------5899399999999978
Q ss_pred EEE
Q ss_conf 000
Q 000424 312 LYS 314 (1525)
Q Consensus 312 i~s 314 (1525)
+.+
T Consensus 286 ~~~ 288 (325)
T d1pgua1 286 VQK 288 (325)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 899
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=4.3e-18 Score=144.62 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=139.7
Q ss_pred CCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCC
Q ss_conf 6669806899996999993899989999889829999869990999995-278536657300999079989999958990
Q 000424 42 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 120 (1525)
Q Consensus 42 ~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~Dgt 120 (1525)
....+++ |.++|++++|+|++++|++|+.|++|++||+.+++++.++. |...|. +++|+|++.++++++.+++
T Consensus 9 ~~~~L~G-H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-----~~~~~~~~~~~~~~~~~~~ 82 (317)
T d1vyhc1 9 EKYALSG-HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-----DISFDHSGKLLASCSADMT 82 (317)
T ss_dssp CSCEEEC-CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-----EEEECTTSSEEEEEETTSC
T ss_pred CCEEECC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE-----EEEEECCCCCCCCCCCCCC
T ss_conf 4489858-888768999938989999993899299998999979999957888677-----7763011110111111111
Q ss_pred EEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99996888985015750125768489999089999999978997157871121289999975321257873112434400
Q 000424 121 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRIL 200 (1525)
Q Consensus 121 IkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iL 200 (1525)
+.+|+... ........+|...+.++.|+|++..+++++.|+.+++||++.... . ..+
T Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~---------------~~~ 139 (317)
T d1vyhc1 83 IKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------V---------------KTF 139 (317)
T ss_dssp CCEEETTS--SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------E---------------EEE
T ss_pred CCCCCCCC--CCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEE------E---------------EEE
T ss_conf 01110011--111111000000000000169985577652675235751144303------4---------------687
Q ss_pred CCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 1358851112899069999158972899830455687643330000347425441002334785
Q 000424 201 SQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 264 (1525)
Q Consensus 201 s~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~ 264 (1525)
..+ ...+..+.|+|..++++ +++.|..++.|..+.+. ....++.|.+..
T Consensus 140 ~~~-------~~~~~~~~~~~~~~~l~------~~~~d~~v~~~~~~~~~--~~~~~~~~~~~i 188 (317)
T d1vyhc1 140 TGH-------REWVRMVRPNQDGTLIA------SCSNDQTVRVWVVATKE--CKAELREHRHVV 188 (317)
T ss_dssp ECC-------SSCEEEEEECTTSSEEE------EEETTSCEEEEETTTCC--EEEEECCCSSCE
T ss_pred CCC-------CCCCEEEECCCCCCEEE------EEECCCEEEEEEECCCE--EEEEEECCCCCC
T ss_conf 167-------77630000166799999------99279829997512540--347882477873
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=7.9e-18 Score=142.67 Aligned_cols=156 Identities=14% Similarity=0.217 Sum_probs=139.3
Q ss_pred CCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 96899997079997999984163499999641884666980689999699999389998999988982999986999099
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 86 (1525)
Q Consensus 7 ~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l 86 (1525)
+.-..|+|||..+++++++ .|.++++|+. +.+.....++. |..+|.+++|+|++.++++++.++.+..|+.......
T Consensus 18 ~~I~~l~~sp~~~~l~s~s-~Dg~i~iWd~-~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSAS-EDATIKVWDY-ETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94 (317)
T ss_dssp SCEEEEEECSSSSEEEEEE-SSSCEEEEET-TTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred CCEEEEEECCCCCEEEEEE-CCCEEEEEEC-CCCCEEEEEEC-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8768999938989999993-8992999989-99979999957-8886777763011110111111111011100111111
Q ss_pred EEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 9995-278536657300999079989999958990999968889850157501257684899990899999999789971
Q 000424 87 YTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 165 (1525)
Q Consensus 87 ~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtI 165 (1525)
..+. |...+. ++.|+|++..+++++.|+.+++||+++ ......+.+|...+.+++|+|++.+|++++.|+.|
T Consensus 95 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 95 RTMHGHDHNVS-----SVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp ECCCCCSSCEE-----EEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCCCCCCE-----EEECCCCCCEEEEECCCCCEEEEECCC--CEEEEEECCCCCCCEEEECCCCCCEEEEEECCCEE
T ss_conf 11000000000-----000169985577652675235751144--30346871677763000016679999999279829
Q ss_pred EEEEEEE
Q ss_conf 5787112
Q 000424 166 QVWKTRV 172 (1525)
Q Consensus 166 kIWDlr~ 172 (1525)
++|+.+.
T Consensus 168 ~~~~~~~ 174 (317)
T d1vyhc1 168 RVWVVAT 174 (317)
T ss_dssp EEEETTT
T ss_pred EEEEECC
T ss_conf 9975125
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=8.7e-18 Score=142.36 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=154.3
Q ss_pred CEEEEEECCCCCEEEEEEECCCEEEEEEEECCCC--C-CEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-
Q ss_conf 6899997079997999984163499999641884--6-66980689999699999389998999988982999986999-
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--A-PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY- 83 (1525)
Q Consensus 8 ~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk--~-~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~- 83 (1525)
.-..++|+|.+.+++++. +..|++|+.-.+.. . ......+|.++|++++|+|++++|++|+.|++|++||+...
T Consensus 53 ~V~~v~fs~~g~~latg~--dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~ 130 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CEEEEEECCCCCEEEEEE--CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 289999989999999997--998899773677633116876404889968999986799889886123321111111111
Q ss_pred -CEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf -0999995-27853665730099907998999995899099996888985015750125768489999089999999978
Q 000424 84 -AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 161 (1525)
Q Consensus 84 -~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~ 161 (1525)
.....+. |...+. ++.|+|++.++++++.|+.+++||+.+ ........+|...|++++|++++..+++++.
T Consensus 131 ~~~~~~~~~~~~~v~-----~~~~~~~~~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 131 PRIKAELTSSAPACY-----ALAISPDSKVCFSCCSDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp -EEEEEEECSSSCEE-----EEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111111111111111-----111111111111111111111111111--1111111111111110123444321122356
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf 99715787112128999997532125787311243440013588511128990699991589728998304556876433
Q 000424 162 DGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKN 241 (1525)
Q Consensus 162 DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~ 241 (1525)
|+.+++||++.... . . ... . ...+.++.|+|+.+.++ +++.|..+
T Consensus 204 d~~v~i~d~~~~~~------~---------~------~~~-~-------~~~i~~l~~~~~~~~l~------~~~~d~~i 248 (337)
T d1gxra_ 204 DNTVRSWDLREGRQ------L---------Q------QHD-F-------TSQIFSLGYCPTGEWLA------VGMESSNV 248 (337)
T ss_dssp TSEEEEEETTTTEE------E---------E------EEE-C-------SSCEEEEEECTTSSEEE------EEETTSCE
T ss_pred CCCCCCCCCCCCEE------E---------C------CCC-C-------CCCEEEEEECCCCCCCC------EECCCCCC
T ss_conf 65532111111000------0---------0------246-6-------66157999715303000------00025642
Q ss_pred CCCCCCCCC
Q ss_conf 300003474
Q 000424 242 RAAYTREGR 250 (1525)
Q Consensus 242 k~~~~~eg~ 250 (1525)
+.|..+.+.
T Consensus 249 ~i~d~~~~~ 257 (337)
T d1gxra_ 249 EVLHVNKPD 257 (337)
T ss_dssp EEEETTSSC
T ss_pred CCCCCCCCC
T ss_conf 111111111
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.84 E-value=1.9e-18 Score=147.13 Aligned_cols=216 Identities=11% Similarity=0.098 Sum_probs=151.1
Q ss_pred CCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC---
Q ss_conf 96899997079997999984163499999641884666980689999699999389998999988982999986999---
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY--- 83 (1525)
Q Consensus 7 ~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~--- 83 (1525)
+....|+|+|+..++++++ .|.++++|+. +.+.....+.. |..+|.+++|+|++.++++|+.|+.+++|+....
T Consensus 56 ~~I~~l~~s~~~~~l~sgs-~Dg~v~iWd~-~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 132 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSAS-QDGKLIIWDS-YTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTTEEEEEET-TTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEEC-CCCEEEEEEEC-CCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCC
T ss_conf 9888999989999999997-8995556310-21025799724-6533775676012114431013320101332222122
Q ss_pred -CEEEEEE-C-----------------------------------------CCCEEECCCEEEEEECCCCEEEEEECCCC
Q ss_conf -0999995-2-----------------------------------------78536657300999079989999958990
Q 000424 84 -AVHYTLQ-L-----------------------------------------DNTIKLLGAGAFAFHPTLEWLFVGDRRGT 120 (1525)
Q Consensus 84 -~~l~tL~-H-----------------------------------------~~~V~l~~~~sVaFsPdg~~LvSgS~Dgt 120 (1525)
.....+. | ...+. ...+.+...++++++.|++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~ 207 (340)
T d1tbga_ 133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM-----SLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-----EEEECTTSSEEEEEETTTE
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-----EECCCCCCCEEEEEECCCE
T ss_conf 21110013542110111111111111112445432001232211111233101576-----3001244212687605736
Q ss_pred EEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99996888985015750125768489999089999999978997157871121289999975321257873112434400
Q 000424 121 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRIL 200 (1525)
Q Consensus 121 IkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iL 200 (1525)
|++||+++ ......+.+|...|++++|+|++.+|++++.|++|++||++..... ..+ .
T Consensus 208 v~i~d~~~--~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~------~~~-~------------- 265 (340)
T d1tbga_ 208 AKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL------MTY-S------------- 265 (340)
T ss_dssp EEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------EEE-C-------------
T ss_pred EEEEECCC--CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCC------CCC-C-------------
T ss_conf 99999999--9488999578898589999799899999969996999752122111------111-1-------------
Q ss_pred CCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 135885111289906999915897289983045568764333000034742544100233478510
Q 000424 201 SQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 201 s~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
. ......+..+.|+|+.++++ ++++|..++.|...++ ++..++++|.+.+.+
T Consensus 266 -~-----~~~~~~i~~~~~s~~~~~l~------~g~~dg~i~iwd~~~~--~~~~~~~~H~~~V~~ 317 (340)
T d1tbga_ 266 -H-----DNIICGITSVSFSKSGRLLL------AGYDDFNCNVWDALKA--DRAGVLAGHDNRVSC 317 (340)
T ss_dssp -C-----TTCCSCEEEEEECSSSCEEE------EEETTSCEEEEETTTC--CEEEEECCCSSCEEE
T ss_pred -C-----CCCCCCEEEEEECCCCCEEE------EEECCCEEEEEECCCC--CEEEEECCCCCCEEE
T ss_conf -2-----24457458999989999999------9979798999999999--398998489997899
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.82 E-value=2.2e-17 Score=139.35 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=120.4
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE--CCCCEEECCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf 9806899996999993899989999889829999869990999995--27853665730099907998999995899099
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 122 (1525)
Q Consensus 45 kik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~--H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIk 122 (1525)
++..+|.++|++++|+|++.+|++|+.|++|++||+.++++..++. |...|. +++|+|++. +++++.|+.++
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~-----~v~~~~~g~-~~~~~~d~~v~ 79 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT-----GIKTTSKGD-LFTVSWDDHLK 79 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE-----EEEECTTSC-EEEEETTTEEE
T ss_pred EECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEE-----EEEEECCCE-EECCCCEEEEE
T ss_conf 684888878289999799999999908992999999999688998378877489-----988403311-21023102688
Q ss_pred EEECCCC-CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9968889-850157501257684899990899999999789971578711212899999753212578731124344001
Q 000424 123 AWDVSIE-RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILS 201 (1525)
Q Consensus 123 VWDl~s~-~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs 201 (1525)
+|+.... ..........|...+.+++|+|++.++++++ ++.+++|+...... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~-----------~~------------- 134 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE-----------VP------------- 134 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE-----------EE-------------
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC-----------CC-------------
T ss_conf 731677620111000111134432100112211111222-22221111111111-----------01-------------
Q ss_pred CCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 3588511128990699991589728998304556876433300003474
Q 000424 202 QQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGR 250 (1525)
Q Consensus 202 ~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~ 250 (1525)
....+..+.++|+.+.++ +++.|..++.|..+.+.
T Consensus 135 --------~~~~~~~~~~s~~~~~l~------~g~~dg~i~~~d~~~~~ 169 (299)
T d1nr0a2 135 --------ISYNSSCVALSNDKQFVA------VGGQDSKVHVYKLSGAS 169 (299)
T ss_dssp --------CSSCEEEEEECTTSCEEE------EEETTSEEEEEEEETTE
T ss_pred --------CCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCC
T ss_conf --------111233221111111111------11111111111111111
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=1.7e-16 Score=132.90 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=96.8
Q ss_pred EEECCCCCCCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCE
Q ss_conf 69806899996-999993899989999889829999869990999995-2785366573009990799899999589909
Q 000424 44 TKIKTDLKKPI-VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121 (1525)
Q Consensus 44 tkik~~H~~~V-~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtI 121 (1525)
+.+++ |...| .|++| ++++|++|+.|++|++||+.+++++.++. |...|+ +++|+|+ ..+++++.|++|
T Consensus 6 ~tL~G-H~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-----~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 6 TTLRG-HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-----ALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp EEEEC-CSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-----EEEEETT-TEEEEEETTCCE
T ss_pred EEECC-CCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE-----EEEECCC-CEEEEEECCCCC
T ss_conf 88898-37886999998--899999991899099998999939999978999889-----9998699-999999645244
Q ss_pred EEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 9996888985015750125768489999089999999978997157871121
Q 000424 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 122 kVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~ 173 (1525)
++|+..............+........+++++.++++++.|++|++||++..
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~ 128 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCC
T ss_conf 3211111111111100111111111111123220455438886899985677
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.7e-16 Score=132.84 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=91.8
Q ss_pred CCEEEEEECCCCCEEEEEECCC-CEEEEECCCC--CEEEEEE-C-CCCEEECCCEEEEEEC--CCCEEEEEECCCCEEEE
Q ss_conf 9969999938999899998898-2999986999--0999995-2-7853665730099907--99899999589909999
Q 000424 52 KPIVNLACHPRLPVLYVAYADG-LIRAYNIHTY--AVHYTLQ-L-DNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAW 124 (1525)
Q Consensus 52 ~~V~sIafsP~g~~LaSGs~Dg-tIkIWDi~t~--~~l~tL~-H-~~~V~l~~~~sVaFsP--dg~~LvSgS~DgtIkVW 124 (1525)
..+.+++|+|+++.|++++.+. .|+.|+.... .....+. | ...|+ +++|+| ++.++++++.|++|++|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~-----~v~fsP~~~g~~lasgs~Dg~i~iW 92 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-----TVKFSPIKGSQYLCSGDESGKVIVW 92 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-----EEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEE-----EEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 98479999899799999969987999976888876502899078999889-----9998117999799999489977985
Q ss_pred ECCCC--CCE----EEEEECCCCCCEEEEEECCCCCEEEEEEC--CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68889--850----15750125768489999089999999978--99715787112128999997532125787311243
Q 000424 125 DVSIE--RPS----MIGIIQVGSQPITSVAWLPMLRLLVTLCR--DGSLQVWKTRVIINPNRPPMQANFFEPASIESIDI 196 (1525)
Q Consensus 125 Dl~s~--~~s----~i~~l~gH~~~VtsIafsPdg~lLvSgS~--DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi 196 (1525)
|.... ... .......|..+|.+++|++++.++++++. ++.+++|+.+.... .
T Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~------~-------------- 152 (325)
T d1pgua1 93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS------L-------------- 152 (325)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE------E--------------
T ss_pred EECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCC------C--------------
T ss_conf 40588621565100254113656737799989998822010012440478885023311------0--------------
Q ss_pred CCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 44001358851112899069999158972899830455687643330000347
Q 000424 197 PRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREG 249 (1525)
Q Consensus 197 ~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg 249 (1525)
..+..+ -..|+++.|+|..+...+ ++++|..++.|....+
T Consensus 153 -~~~~~h-------~~~v~~~~~~~~~~~~~~-----~~~~d~~v~~~d~~~~ 192 (325)
T d1pgua1 153 -GEVSGH-------SQRINACHLKQSRPMRSM-----TVGDDGSVVFYQGPPF 192 (325)
T ss_dssp -EECCSC-------SSCEEEEEECSSSSCEEE-----EEETTTEEEEEETTTB
T ss_pred -EEEEEC-------CCCCCCCCCCCCCCCEEE-----EEECCCCCCCCCCCCC
T ss_conf -012001-------234321111234320688-----8621112211112211
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1e-16 Score=134.61 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=11.3
Q ss_pred EEEEECCCCCEEEEEEECCCEEEEEEE
Q ss_conf 999970799979999841634999996
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGT 36 (1525)
Q Consensus 10 ~hla~hP~~p~Vl~s~~~r~sV~ii~t 36 (1525)
..+++++ .++++++ .|.++++|+.
T Consensus 18 ~~v~~~~--~~l~S~S-~D~~iriWd~ 41 (393)
T d1sq9a_ 18 FSVSACN--SFTVSCS-GDGYLKVWDN 41 (393)
T ss_dssp EEEEECS--SEEEEEE-TTSEEEEEES
T ss_pred EEEEEEC--CEEEEEE-CCCEEEEEEC
T ss_conf 7999969--9999997-9996998789
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=1.7e-16 Score=132.99 Aligned_cols=101 Identities=17% Similarity=0.019 Sum_probs=65.7
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 9806899996999993899989999889829999869990999995-278536657300999079989999958990999
Q 000424 45 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 123 (1525)
Q Consensus 45 kik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkV 123 (1525)
.+.+ |.++|++++|+| |++|+.||+|++||..+. .. |...|. ++.|+++. .+++++.|+++++
T Consensus 8 ~l~g-H~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~-----~~~~~~~~-~~~s~s~D~~v~~ 71 (287)
T d1pgua2 8 TISG-HNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIV-----SLDNSKAQ-EYSSISWDDTLKV 71 (287)
T ss_dssp EECC-CSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEE-----EEECCSTT-CCEEEETTTEEEE
T ss_pred EECC-CCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEE-----EEEECCCC-EEEEEEECCCCCC
T ss_conf 9988-798649999895----789848991999989998-----888778789-----99965997-2898861012221
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEE
Q ss_conf 968889850157501257684899990899999999789971578711
Q 000424 124 WDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 124 WDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr 171 (1525)
|+... . .....+.++.+++++..+++++ +..+.+|+..
T Consensus 72 w~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 109 (287)
T d1pgua2 72 NGITK--H-------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSF 109 (287)
T ss_dssp TTEEE--E-------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETT
T ss_pred CCCCC--C-------CCCCCEEEEEECCCCCEEEEEE-CCCCEEEECC
T ss_conf 11111--1-------1122101466416785699960-3321000011
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.76 E-value=1.6e-16 Score=133.18 Aligned_cols=195 Identities=8% Similarity=-0.006 Sum_probs=128.1
Q ss_pred CCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-
Q ss_conf 9689999707999799998416349999964188466698068999969999938999899998898299998699909-
Q 000424 7 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV- 85 (1525)
Q Consensus 7 ~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~- 85 (1525)
+.-..|+|+|+..++++++ .|.++++|+. +.++....+...|...|++++|+|++.+ ++++.|+.+++|+......
T Consensus 13 ~~V~~l~~s~dg~~l~s~s-~Dg~v~vWd~-~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSAD-AEGHINSWDI-STGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVD 89 (299)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTSCEEEEET-TTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSC
T ss_pred CCCEEEEECCCCCEEEEEC-CCCEEEEEEC-CCCCEEEEECCCCCCCEEEEEEECCCEE-ECCCCEEEEEEECCCCCCCC
T ss_conf 7828999979999999990-8992999999-9996889983788774899884033112-10231026887316776201
Q ss_pred --EEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf --99995-278536657300999079989999958990999968889850157501257684899990899999999789
Q 000424 86 --HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 86 --l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~D 162 (1525)
..... +...+. ++.|+|++..+++++ ++.+++|+... .... .....+.+++|+|++.++++++.|
T Consensus 90 ~~~~~~~~~~~~~~-----~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~----~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 90 SSKAVANKLSSQPL-----GLAVSADGDIAVAAC-YKHIAIYSHGK--LTEV----PISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp TTSCCEEECSSCEE-----EEEECTTSSCEEEEE-SSEEEEEETTE--EEEE----ECSSCEEEEEECTTSCEEEEEETT
T ss_pred CCCCCCCCCCCCCC-----CCCCCCCCCCCCCCC-CCCCCCCCCCC--CCCC----CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11000111134432-----100112211111222-22221111111--1110----111123322111111111111111
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 97157871121289999975321257873112434400135885111289906999915897289983045568764333
Q 000424 163 GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNR 242 (1525)
Q Consensus 163 gtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k 242 (1525)
+.|++||++.... . .. . .. .+ -..|+++.|+|..+.++ +++.+..++
T Consensus 158 g~i~~~d~~~~~~------~-~~-----------~-~~-~~-------~~~i~~~~~~~~~~~l~------~~~~d~~i~ 204 (299)
T d1nr0a2 158 SKVHVYKLSGASV------S-EV-----------K-TI-VH-------PAEITSVAFSNNGAFLV------ATDQSRKVI 204 (299)
T ss_dssp SEEEEEEEETTEE------E-EE-----------E-EE-EC-------SSCEEEEEECTTSSEEE------EEETTSCEE
T ss_pred CCCCCCCCCCCCC------C-CC-----------C-CC-CC-------CCCCCCCCCCCCCCCCC------CCCCCCCCC
T ss_conf 1111111111111------1-11-----------1-11-11-------11111111111111111------111111111
Q ss_pred CCCCCCC
Q ss_conf 0000347
Q 000424 243 AAYTREG 249 (1525)
Q Consensus 243 ~~~~~eg 249 (1525)
.|....+
T Consensus 205 ~~~~~~~ 211 (299)
T d1nr0a2 205 PYSVANN 211 (299)
T ss_dssp EEEGGGT
T ss_pred CCCCCCC
T ss_conf 1111111
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=3.4e-16 Score=130.71 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-------EEEEEECCCCEEECC-CEEEEEEC-CCCEEEEEECCC
Q ss_conf 899996999993899989999889829999869990-------999995278536657-30099907-998999995899
Q 000424 49 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA-------VHYTLQLDNTIKLLG-AGAFAFHP-TLEWLFVGDRRG 119 (1525)
Q Consensus 49 ~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~-------~l~tL~H~~~V~l~~-~~sVaFsP-dg~~LvSgS~Dg 119 (1525)
+|.+.|.++++++ +++++++.|++||+||..+.. ......|...+.-.. ...+.... +...+++++.|+
T Consensus 12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred CCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCC
T ss_conf 6367127999969--99999979996998789878877654046765420477167666750015799876899994899
Q ss_pred CEEEEECCCC--CCEEEE------EECCCCCCEEEEEECCC-----CCEEEEEECCCCEEEEEEEE
Q ss_conf 0999968889--850157------50125768489999089-----99999997899715787112
Q 000424 120 TLLAWDVSIE--RPSMIG------IIQVGSQPITSVAWLPM-----LRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 120 tIkVWDl~s~--~~s~i~------~l~gH~~~VtsIafsPd-----g~lLvSgS~DgtIkIWDlr~ 172 (1525)
+|++|+.... ...... ....+...+..++|.++ +.++++++.|+++++|++..
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEC
T ss_conf 199998228982056512456324311578966899984478865421799983898199987404
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=3.8e-15 Score=123.03 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=161.2
Q ss_pred EECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-C
Q ss_conf 970799979999841634999996418846669806899996999993899989999889829999869990999995-2
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L 91 (1525)
Q Consensus 13 a~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H 91 (1525)
++.+...++++|+ .|.++++|+. +.++....+.+ |.++|++++|+|+ .+|++|+.|++|++|+........... +
T Consensus 18 c~~~~~~~l~tgs-~Dg~i~vWd~-~~~~~~~~l~~-H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~ 93 (355)
T d1nexb2 18 CLQFEDNYVITGA-DDKMIRVYDS-INKKFLLQLSG-HDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGH 93 (355)
T ss_dssp EEEEETTEEEEEE-TTTEEEEEET-TTTEEEEEEEC-CSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEEECCCEEEEEE-CCCEEEEEEC-CCCCEEEEEEC-CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9998899999991-8990999989-99939999978-9998899998699-99999964524432111111111111001
Q ss_pred C--CCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCC---------------------EEEEEECCCCCCEEEEE
Q ss_conf 7--853665730099907998999995899099996888985---------------------01575012576848999
Q 000424 92 D--NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP---------------------SMIGIIQVGSQPITSVA 148 (1525)
Q Consensus 92 ~--~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~---------------------s~i~~l~gH~~~VtsIa 148 (1525)
. .... ...+++++.++++++.|++|++||+.+... ........|...+ ..
T Consensus 94 ~~~~~~~-----~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~ 166 (355)
T d1nexb2 94 NSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RT 166 (355)
T ss_dssp SSCEEEE-----EEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EE
T ss_pred CCCCCCC-----CCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCC--CC
T ss_conf 1111111-----1111123220455438886899985677300124652000100000112340121011002221--00
Q ss_pred ECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEE
Q ss_conf 90899999999789971578711212899999753212578731124344001358851112899069999158972899
Q 000424 149 WLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVL 228 (1525)
Q Consensus 149 fsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai 228 (1525)
+.+++.++++++.|+.|++||++.... .. .... ....+....++|..+.+.
T Consensus 167 ~~~~~~~~~~~~~d~~i~~~d~~~~~~------~~---------------~~~~-------~~~~~~~~~~~~~~~~~~- 217 (355)
T d1nexb2 167 VSGHGNIVVSGSYDNTLIVWDVAQMKC------LY---------------ILSG-------HTDRIYSTIYDHERKRCI- 217 (355)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEE------EE---------------EECC-------CSSCEEEEEEETTTTEEE-
T ss_pred CCCCCCEEEEECCCCEEEEEECCCCCC------EE---------------EEEC-------CCCCCCCCCCCCCCEEEE-
T ss_conf 002563344211442044430131100------01---------------1000-------123321111112100210-
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHH
Q ss_conf 83045568764333000034742544100233478510011001247885420035889988752115897236002532
Q 000424 229 LFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIAR 308 (1525)
Q Consensus 229 ~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~k 308 (1525)
.++.|..++.|..+++. ....+++|.+.+.++. +....++... .|+.+.+||+..
T Consensus 218 -----~~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~------~~~~~l~~~~------------~dg~i~iwd~~~ 272 (355)
T d1nexb2 218 -----SASMDTTIRIWDLENGE--LMYTLQGHTALVGLLR------LSDKFLVSAA------------ADGSIRGWDAND 272 (355)
T ss_dssp -----EEETTSCEEEEETTTCC--EEEEECCCSSCCCEEE------ECSSEEEEEC------------TTSEEEEEETTT
T ss_pred -----CCCCCCEEEEEECCCCC--CCCCCCCCCCCCCCCC------CCCCEEEEEE------------CCCCCCCCCCCC
T ss_conf -----12456368763012211--1111111111111112------3210033320------------111111111111
Q ss_pred HCEEEE
Q ss_conf 100000
Q 000424 309 KAFLYS 314 (1525)
Q Consensus 309 ~~~i~s 314 (1525)
....++
T Consensus 273 ~~~~~~ 278 (355)
T d1nexb2 273 YSRKFS 278 (355)
T ss_dssp CCEEEE
T ss_pred CCEECC
T ss_conf 110001
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=3.6e-15 Score=123.25 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=93.0
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE----EEEECCCCEEECCCEEEEEECCC-CEEEEEECCCCEE
Q ss_conf 689999699999389998999988982999986999099----99952785366573009990799-8999995899099
Q 000424 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH----YTLQLDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLL 122 (1525)
Q Consensus 48 ~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l----~tL~H~~~V~l~~~~sVaFsPdg-~~LvSgS~DgtIk 122 (1525)
..|++.|++++|+|++++|++|+.|++|++||+.+.... ..+.|..+|. +++|+|++ ..+++|+.|++|+
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~-----~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-----CCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-----EEEEEESSSEEEEEEETTSCEE
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEE-----EEEEECCCCCEEEECCCCCCEE
T ss_conf 89989788899958999999997999299997569986368988558999889-----9999589997899812653114
Q ss_pred EEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 996888985015750125768489999089999999978997157871121
Q 000424 123 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 123 VWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~ 173 (1525)
+|+....... ......+........+.++...+++++.|+++++||++..
T Consensus 83 ~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~ 132 (342)
T d1yfqa_ 83 KVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHH
T ss_pred EEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 5420443200-0001111111111111111111111012221110202344
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4e-14 Score=115.58 Aligned_cols=120 Identities=14% Similarity=0.201 Sum_probs=94.0
Q ss_pred CCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECC
Q ss_conf 846669806899996999993899989999889829999869990999995-2785366573009990799899999589
Q 000424 40 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR 118 (1525)
Q Consensus 40 gk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~D 118 (1525)
.++...+++ |.+.|.+ ++++++++|++|+.|++|++||+.+++++.++. |...|. +++|+|+ ++++++.|
T Consensus 6 ~~~~~~l~G-H~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~-----~v~~~~~--~l~s~s~D 76 (342)
T d2ovrb2 6 LKSPKVLKG-HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-----SSQMRDN--IIISGSTD 76 (342)
T ss_dssp CCCCEEEEC-STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE-----EEEEETT--EEEEEETT
T ss_pred CCCCEEECC-CCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE-----EEEECCC--CCCCCEEC
T ss_conf 875889888-6875099-9997899999991899099998999979999948899989-----9994798--63210000
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 909999688898501575012576848999908999999997899715787112
Q 000424 119 GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 119 gtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~ 172 (1525)
+++++|+.... ........+...+....+ ....+..++.|+++.+|+.+.
T Consensus 77 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~ 126 (342)
T d2ovrb2 77 RTLKVWNAETG--ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIET 126 (342)
T ss_dssp SCEEEEETTTT--EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSS
T ss_pred CCCCCCCCCCC--CCEECCCCCCEEEEEEEC--CCCCCCCCCCCEEEEEEECCC
T ss_conf 01111111100--000001233304765202--465221234440378740355
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=8.1e-15 Score=120.65 Aligned_cols=165 Identities=11% Similarity=0.013 Sum_probs=122.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCC-CEEECCCCCCCEEEEEECCCCC-EEEEEECCCCEEEEEC
Q ss_conf 4457968999970799979999841634999996418846-6698068999969999938999-8999988982999986
Q 000424 3 SISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA-PTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNI 80 (1525)
Q Consensus 3 ~~~~~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~-~tkik~~H~~~V~sIafsP~g~-~LaSGs~DgtIkIWDi 80 (1525)
+--.|....|+|+|+..++++++ .|.++++|+...+... ......+|..+|.+++|+|++. ++++|+.|++|++|+.
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEEC
T ss_conf 89989788899958999999997-99929999756998636898855899988999995899978998126531145420
Q ss_pred CCCCEEEEEE-CC-CCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCC--CCEEEEEECCC--CCCEEEEEECCCCC
Q ss_conf 9990999995-27-8536657300999079989999958990999968889--85015750125--76848999908999
Q 000424 81 HTYAVHYTLQ-LD-NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE--RPSMIGIIQVG--SQPITSVAWLPMLR 154 (1525)
Q Consensus 81 ~t~~~l~tL~-H~-~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~--~~s~i~~l~gH--~~~VtsIafsPdg~ 154 (1525)
.......... +. .... ...+.++...+++++.|+++++||.+.. ..........+ ........+.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 87 IGSPSFQALTNNEANLGI-----CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSEEECBSCCCCSCE-----EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 443200000111111111-----111111111111101222111020234443302300024300120000010001687
Q ss_pred EEEEEECCCCEEEEEEEEE
Q ss_conf 9999978997157871121
Q 000424 155 LLVTLCRDGSLQVWKTRVI 173 (1525)
Q Consensus 155 lLvSgS~DgtIkIWDlr~~ 173 (1525)
.+++++.|+.|++||++..
T Consensus 162 ~~~~~~~d~~i~~~~~~~~ 180 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp EEEEEESTTEEEEEESSCC
T ss_pred CEEEECCCCCEEEEECCCC
T ss_conf 0246517984788760567
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=1.9e-13 Score=110.58 Aligned_cols=191 Identities=10% Similarity=0.008 Sum_probs=134.2
Q ss_pred CEEEEEECC-CCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECC--CCEEEEECCCCC
Q ss_conf 689999707-99979999841634999996418846669806899996999993899989999889--829999869990
Q 000424 8 TEVHLALTP-LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD--GLIRAYNIHTYA 84 (1525)
Q Consensus 8 ~~~hla~hP-~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~D--gtIkIWDi~t~~ 84 (1525)
|.+.-.|+| ++.++.+++ +..+.+|+. +++. ...+ .|...|++++|+|+++.+++++.| ..|++||..++.
T Consensus 4 ~~~~~~fSP~dG~~~a~~~--~g~v~v~d~-~~~~-~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~ 77 (360)
T d1k32a3 4 SKFAEDFSPLDGDLIAFVS--RGQAFIQDV-SGTY-VLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77 (360)
T ss_dssp GGGEEEEEECGGGCEEEEE--TTEEEEECT-TSSB-EEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred HHHCCCCCCCCCCEEEEEE--CCEEEEEEC-CCCC-EEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 0100514688999999998--996999989-9994-8991--69998888999899999999992899899999899994
Q ss_pred EEEEEECCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--
Q ss_conf 999995278536657300999079989999958990999968889850157501257684899990899999999789--
Q 000424 85 VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD-- 162 (1525)
Q Consensus 85 ~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~D-- 162 (1525)
......|...+. +++|+|++.++++++.++.+++|+..+. .....+..|...+.+++|+|++.+|+.++.+
T Consensus 78 ~~~~~~~~~~v~-----~~~~spdg~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~ 150 (360)
T d1k32a3 78 AEKFEENLGNVF-----AMGVDRNGKFAVVANDRFEIMTVDLETG--KPTVIERSREAMITDFTISDNSRFIAYGFPLKH 150 (360)
T ss_dssp EEECCCCCCSEE-----EEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred EEEEECCCCEEE-----EEEECCCCCCCCEECCCCCCCCCCCCCC--CEEEEEECCCCCCCCHHHCCCEEEEEEECCCCC
T ss_conf 887508971277-----4121145432100011111000001222--100000013552023012132256652123312
Q ss_pred --------CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCC
Q ss_conf --------971578711212899999753212578731124344001358851112899069999158972899830455
Q 000424 163 --------GSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFT 234 (1525)
Q Consensus 163 --------gtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s 234 (1525)
+.+++||...... . .+.... ..+..+.|.|+...++ +
T Consensus 151 ~~~~~~~~~~~~v~d~~~~~~---------~-------------~~~~~~-------~~~~~~~~spdg~~l~------~ 195 (360)
T d1k32a3 151 GETDGYVMQAIHVYDMEGRKI---------F-------------AATTEN-------SHDYAPAFDADSKNLY------Y 195 (360)
T ss_dssp STTCSCCEEEEEEEETTTTEE---------E-------------ECSCSS-------SBEEEEEECTTSCEEE------E
T ss_pred CCEEECCCCCEEEECCCCCCE---------E-------------EECCCC-------CCCCCCCCCCCCCEEE------E
T ss_conf 110002565426630455713---------5-------------303543-------2211001257799999------9
Q ss_pred CCCCCCCCCCCC
Q ss_conf 687643330000
Q 000424 235 GGDNIKNRAAYT 246 (1525)
Q Consensus 235 ~~Dd~~~k~~~~ 246 (1525)
++++..++.|..
T Consensus 196 ~s~~~~~~~~d~ 207 (360)
T d1k32a3 196 LSYRSLDPSPDR 207 (360)
T ss_dssp EESCCCCCEECS
T ss_pred EECCCCEECCCC
T ss_conf 959985575333
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.65 E-value=6.4e-14 Score=114.06 Aligned_cols=105 Identities=9% Similarity=-0.054 Sum_probs=70.2
Q ss_pred EEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEEECCCEEEEEECCCCEEEEEECC--CCEEEEECCCCCCEE
Q ss_conf 99938-999899998898299998699909999952785366573009990799899999589--909999688898501
Q 000424 57 LACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR--GTLLAWDVSIERPSM 133 (1525)
Q Consensus 57 IafsP-~g~~LaSGs~DgtIkIWDi~t~~~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS~D--gtIkVWDl~s~~~s~ 133 (1525)
-+|+| ++++++.++ ++.|++||..++.... +.|...|. +++|+||+++|++++.+ ..|++||..+. ..
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~-----~~~~spDg~~l~~~~~~~g~~v~v~d~~~~--~~ 78 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIR-----YVRRGGDTKVAFIHGTREGDFLGIYDYRTG--KA 78 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEE-----EEEECSSSEEEEEEEETTEEEEEEEETTTC--CE
T ss_pred CCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE-CCCCCCEE-----EEEECCCCCEEEEEECCCCCEEEEEECCCC--CE
T ss_conf 514688999999998-9969999899994899-16999888-----899989999999999289989999989999--48
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEE
Q ss_conf 57501257684899990899999999789971578711
Q 000424 134 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 134 i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr 171 (1525)
..+..|...|.+++|+|++.+|++++.++.+++|+..
T Consensus 79 -~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 115 (360)
T d1k32a3 79 -EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 115 (360)
T ss_dssp -EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -EEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCC
T ss_conf -8750897127741211454321000111110000012
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=3e-13 Score=109.18 Aligned_cols=150 Identities=14% Similarity=0.087 Sum_probs=66.7
Q ss_pred CEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC---
Q ss_conf 68999970799979999841634999996418846669806899996999993899989999889829999869990---
Q 000424 8 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA--- 84 (1525)
Q Consensus 8 ~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~--- 84 (1525)
.-..|+|+| +++++ .|.++++|+...+ ..+|...|.++++++. ..+++++.|+++++|++...+
T Consensus 15 ~I~~l~~s~----l~sgs-~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~~~ 81 (287)
T d1pgua2 15 GITALTVNP----LISGS-YDGRIMEWSSSSM-------HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGS 81 (287)
T ss_dssp CEEEEETTT----TEEEE-TTSCEEETTTTEE-------ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSS
T ss_pred CEEEEEECC----EEEEE-CCCEEEEEECCCC-------CCCCCCCEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 649999895----78984-8991999989998-------8887787899996599-728988610122211111111122
Q ss_pred -E-------------------EEEEE-CCC-CEEE--CCCEEEEEECCCCEEEEEECC-CCEEEEECCCCCCEEEEEECC
Q ss_conf -9-------------------99995-278-5366--573009990799899999589-909999688898501575012
Q 000424 85 -V-------------------HYTLQ-LDN-TIKL--LGAGAFAFHPTLEWLFVGDRR-GTLLAWDVSIERPSMIGIIQV 139 (1525)
Q Consensus 85 -~-------------------l~tL~-H~~-~V~l--~~~~sVaFsPdg~~LvSgS~D-gtIkVWDl~s~~~s~i~~l~g 139 (1525)
+ +..+. ... .+.. .......+++++..+++++.| +.+++|+.... .........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~-~~~~~~~~~ 160 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTP 160 (287)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EEEEECSSC
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCC-CEEEEEEEC
T ss_conf 1014664167856999603321000011003543101222035652147511100022100021000122-100012102
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEEEE
Q ss_conf 57684899990899999999789971578711
Q 000424 140 GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 140 H~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr 171 (1525)
|...+++++|+|++.+|++++.|+.|++||++
T Consensus 161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 192 (287)
T d1pgua2 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQ 192 (287)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEC
T ss_conf 47853699951676521101111110000002
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.9e-13 Score=110.53 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=63.6
Q ss_pred EECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-C
Q ss_conf 970799979999841634999996418846669806899996999993899989999889829999869990999995-2
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L 91 (1525)
Q Consensus 13 a~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H 91 (1525)
++++++.++++++ .|.++++|+. +.++....+.+ |..+|.+++|+| .++++|+.|+++++|+........... +
T Consensus 22 ~~~~~g~~l~sgs-~Dg~i~vWd~-~~~~~~~~~~~-h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~ 96 (342)
T d2ovrb2 22 CLQFCGNRIVSGS-DDNTLKVWSA-VTGKCLRTLVG-HTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGH 96 (342)
T ss_dssp EEEEETTEEEEEE-TTSCEEEEET-TTCCEEEECCC-CSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEECCCEEEEEE-CCCEEEEEEC-CCCCEEEEEEC-CCCCEEEEEECC--CCCCCCEECCCCCCCCCCCCCCEECCCCC
T ss_conf 9997899999991-8990999989-99979999948-899989999479--86321000001111111100000001233
Q ss_pred CCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEE
Q ss_conf 78536657300999079989999958990999968889850157501257684899990899999999789971578711
Q 000424 92 DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 92 ~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr 171 (1525)
...+. ...+ ....+..+..|+++.+|+..+. ........+.. ....+.+....+++++.|+.|++||.+
T Consensus 97 ~~~~~-----~~~~--~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~d~~ 165 (342)
T d2ovrb2 97 TSTVR-----CMHL--HEKRVVSGSRDATLRVWDIETG--QCLHVLMGHVA--AVRCVQYDGRRVVSGAYDFMVKVWDPE 165 (342)
T ss_dssp SSCEE-----EEEE--ETTEEEEEETTSEEEEEESSSC--CEEEEEECCSS--CEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred CEEEE-----EEEC--CCCCCCCCCCCEEEEEEECCCC--CCEEEEECCCC--CCEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 30476-----5202--4652212344403787403556--30011100111--100000133302433589869995252
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.3e-12 Score=101.56 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 6899996999993899989999889829999869990999995-278536657300999079989999958990999968
Q 000424 48 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 48 ~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl 126 (1525)
.+|...|+|++| ++++|++|+.|++|++||+.+++++.++. |...|. +++| ++.++++++.|++|++|+.
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-----~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-----CLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-----EEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE-----EEEC--CCCEEECCCCCCCCCCCCC
T ss_conf 899998899987--699999992899399999999919999926778776-----3423--6300210011101100000
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 8898501575012576848999908999999997899715787112
Q 000424 127 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 127 ~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~ 172 (1525)
........ ...+. .....+.+....+++++.++.+++|+.+.
T Consensus 83 ~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
T d1p22a2 83 NTGEMLNT--LIHHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124 (293)
T ss_dssp SSCCEEEE--ECCCC--SCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred CCCCCCCC--CCCCC--CCCCCCCCCCCCEEECCCCCCEEEEECCC
T ss_conf 24641001--11111--00001111110000013566306861344
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.5e-12 Score=102.37 Aligned_cols=200 Identities=14% Similarity=0.194 Sum_probs=138.2
Q ss_pred EECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-C
Q ss_conf 970799979999841634999996418846669806899996999993899989999889829999869990999995-2
Q 000424 13 ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L 91 (1525)
Q Consensus 13 a~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H 91 (1525)
|++|...++++++ .|.+|++|+. +.++....+++ |.++|.+++|+ +.+|++|+.|+.|++|++..+....... +
T Consensus 20 c~~~d~~~l~sgs-~Dg~i~vWd~-~~~~~~~~l~~-H~~~V~~v~~~--~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~ 94 (293)
T d1p22a2 20 CLQYDDQKIVSGL-RDNTIKIWDK-NTLECKRILTG-HTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEMLNTLIHH 94 (293)
T ss_dssp EEECCSSEEEEEE-SSSCEEEEES-SSCCEEEEECC-CSSCEEEEECC--SSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred EEEECCCEEEEEE-CCCEEEEEEC-CCCCEEEEEEC-CCCCEEEEECC--CCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9987699999992-8993999999-99919999926-77877634236--300210011101100000246410011111
Q ss_pred CCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCC-CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 78536657300999079989999958990999968889-85015750125768489999089999999978997157871
Q 000424 92 DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 92 ~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~-~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDl 170 (1525)
.... ..+.+....++++..++.+++||.... ..........|...+.+..+.+ ..+++++.|+++++||.
T Consensus 95 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 95 CEAV-------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNT 165 (293)
T ss_dssp CSCE-------EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEET
T ss_pred CCCC-------CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCCCEEEECC
T ss_conf 1000-------01111110000013566306861344544421210001135431100000--22011069986041007
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 12128999997532125787311243440013588511128990699991589728998304556876433300003474
Q 000424 171 RVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGR 250 (1525)
Q Consensus 171 r~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~ 250 (1525)
+.... .. .+... ...+..+.+++ +.++ +++.|..++.|..+.+.
T Consensus 166 ~~~~~------~~---------------~~~~~-------~~~v~~~~~~~--~~l~------~~~~dg~i~i~d~~~~~ 209 (293)
T d1p22a2 166 STCEF------VR---------------TLNGH-------KRGIACLQYRD--RLVV------SGSSDNTIRLWDIECGA 209 (293)
T ss_dssp TTCCE------EE---------------EEECC-------SSCEEEEEEET--TEEE------EEETTSCEEEEETTTCC
T ss_pred CCCCE------EE---------------EECCC-------CCCCCCCCCCC--CEEE------EECCCCEEEEEECCCCE
T ss_conf 88838------89---------------97155-------44532216898--7588------76589989998665561
Q ss_pred EEEEEEECCCCCCC
Q ss_conf 25441002334785
Q 000424 251 KQLFAVLQSARGSS 264 (1525)
Q Consensus 251 ~q~~~tlq~~~~~~ 264 (1525)
. ...++++...+
T Consensus 210 ~--~~~~~~~~~~v 221 (293)
T d1p22a2 210 C--LRVLEGHEELV 221 (293)
T ss_dssp E--EEEECCCSSCE
T ss_pred E--EEEECCCCEEE
T ss_conf 4--66521431000
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.52 E-value=7.2e-13 Score=106.37 Aligned_cols=102 Identities=10% Similarity=-0.014 Sum_probs=63.4
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEE---EEECCCC
Q ss_conf 8999988982999986999099999527853665730099907998999995899099996888985015---7501257
Q 000424 65 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI---GIIQVGS 141 (1525)
Q Consensus 65 ~LaSGs~DgtIkIWDi~t~~~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i---~~l~gH~ 141 (1525)
++++.+.|++|++||..+++++.++.+...+. .++|+|||+++++++.|+++++||+.+...... ....+|.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-----~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~ 108 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-----ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR 108 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCSSEE-----EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCCEE-----EEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 99997599979999999995999996899803-----8999899999999958998899975688604899986788876
Q ss_pred CCEEEEEECCCCCEE-EEEECCCCEEEEEEE
Q ss_conf 684899990899999-999789971578711
Q 000424 142 QPITSVAWLPMLRLL-VTLCRDGSLQVWKTR 171 (1525)
Q Consensus 142 ~~VtsIafsPdg~lL-vSgS~DgtIkIWDlr 171 (1525)
..+.+++|+|+++++ +++..++++++||..
T Consensus 109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~ 139 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 139 (426)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 4588500268898799963589769998577
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=7.4e-10 Score=84.35 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=102.4
Q ss_pred CCEEEEEEECCCEEEEEEEECCCC-CCEEECCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEE----C
Q ss_conf 997999984163499999641884-66698068999969999938999899998-89829999869990999995----2
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGR-APTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHYTLQ----L 91 (1525)
Q Consensus 18 ~p~Vl~s~~~r~sV~ii~tveggk-~~tkik~~H~~~V~sIafsP~g~~LaSGs-~DgtIkIWDi~t~~~l~tL~----H 91 (1525)
+..|+++...+.+|.+|+.-..+. ...... +|.+.+.+++|+|++++|++++ .|+.|++|++.......++. +
T Consensus 3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 81 (333)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCC
T ss_conf 3599998789993899998399976999997-579988689995897999999778996999999689870798530136
Q ss_pred CCCEEECCCEEEEEECCCCEEEEEE-CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEE
Q ss_conf 7853665730099907998999995-899099996888985015750125768489999089999999978-99715787
Q 000424 92 DNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR-DGSLQVWK 169 (1525)
Q Consensus 92 ~~~V~l~~~~sVaFsPdg~~LvSgS-~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~-DgtIkIWD 169 (1525)
...+. .++|+||++++++++ .++++.+|+..............+...++++.++|++++++.++. +..+.+|+
T Consensus 82 ~~~p~-----~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~ 156 (333)
T d1ri6a_ 82 PGSLT-----HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT 156 (333)
T ss_dssp SSCCS-----EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCE-----EEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEE
T ss_conf 99854-----9999599988742056888302200111000000100377853149886301013102565542056897
Q ss_pred EE
Q ss_conf 11
Q 000424 170 TR 171 (1525)
Q Consensus 170 lr 171 (1525)
..
T Consensus 157 ~~ 158 (333)
T d1ri6a_ 157 VS 158 (333)
T ss_dssp EC
T ss_pred EC
T ss_conf 32
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.35 E-value=2.8e-09 Score=80.11 Aligned_cols=142 Identities=14% Similarity=0.147 Sum_probs=107.6
Q ss_pred CEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 979999841634999996418846669806899996999993899989-9998898299998699909999952785366
Q 000424 19 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL-YVAYADGLIRAYNIHTYAVHYTLQLDNTIKL 97 (1525)
Q Consensus 19 p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~L-aSGs~DgtIkIWDi~t~~~l~tL~H~~~V~l 97 (1525)
.++|.+...+.++.+|+. +.++....+.. .....+++|+|+++++ ++++.++.|++||+.+++.+.++.......
T Consensus 2 ~~~yV~~~~~~~v~v~D~-~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~- 77 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDV-TSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ- 77 (301)
T ss_dssp EEEEEEETTTTEEEEEET-TTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-
T ss_pred EEEEEEECCCCEEEEEEC-CCCEEEEEEEC--CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCC-
T ss_conf 699999789998999999-99959999988--99836999928989999997899989999999894103200024643-
Q ss_pred CCCEEEEEECCCCEEEEEE-CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCCEEEEEEE
Q ss_conf 5730099907998999995-89909999688898501575012576848999908999999-99789971578711
Q 000424 98 LGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV-TLCRDGSLQVWKTR 171 (1525)
Q Consensus 98 ~~~~sVaFsPdg~~LvSgS-~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLv-SgS~DgtIkIWDlr 171 (1525)
.+.|++++.+++..+ .++.+.+||..+ ........ +.....++.|+|++..++ +++.+..+.+|+..
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~ 146 (301)
T d1l0qa2 78 ----GVAVSPDGKQVYVTNMASSTLSVIDTTS--NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146 (301)
T ss_dssp ----EEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ----CCCCCCCCCCCCCCCCCCCEEEECCCCC--CEEEEECC-CCCCCEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf ----1100011111111111110011001243--02432024-444423787605897155420111100110001
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.31 E-value=7.1e-11 Score=91.77 Aligned_cols=144 Identities=8% Similarity=-0.003 Sum_probs=105.1
Q ss_pred CCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE--E----C
Q ss_conf 997999984163499999641884666980689999699999389998999988982999986999099999--5----2
Q 000424 18 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL--Q----L 91 (1525)
Q Consensus 18 ~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL--~----H 91 (1525)
+.+++.+...+.++.+|+. +.++....+.. | ..+.+++|+|+++++++++.|+++++||+.++++.... . |
T Consensus 31 ~~~~~V~~~~dg~v~vwD~-~t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDG-DSKKIVKVIDT-G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp GGEEEEEETTTTEEEEEET-TTCSEEEEEEC-C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred CEEEEEEECCCCEEEEEEC-CCCCEEEEEEC-C-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCC
T ss_conf 7089999759997999999-99959999968-9-9803899989999999995899889997568860489998678887
Q ss_pred CCCEEECCCEEEEEECCCCEEEEEE-CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEE
Q ss_conf 7853665730099907998999995-89909999688898501575012576848999908999-999997899715787
Q 000424 92 DNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWK 169 (1525)
Q Consensus 92 ~~~V~l~~~~sVaFsPdg~~LvSgS-~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~-lLvSgS~DgtIkIWD 169 (1525)
...+. ++.|+|||+++++++ .++++++||..+ ..+......|...+....|.+++. ..+..+.|+...+|.
T Consensus 108 ~~~~~-----s~~~spDG~~l~v~~~~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~ 180 (426)
T d1hzua2 108 RSVES-----SKFKGYEDRYTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180 (426)
T ss_dssp EEEEE-----CCSTTCTTTEEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCEEE-----EEEECCCCCEEEEEECCCCEEEEECCCC--CCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 64588-----5002688987999635897699985776--4125786226777364364278850389987878788885
Q ss_pred EE
Q ss_conf 11
Q 000424 170 TR 171 (1525)
Q Consensus 170 lr 171 (1525)
..
T Consensus 181 ~~ 182 (426)
T d1hzua2 181 VK 182 (426)
T ss_dssp ET
T ss_pred CC
T ss_conf 27
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=5.8e-09 Score=77.78 Aligned_cols=145 Identities=15% Similarity=0.074 Sum_probs=74.9
Q ss_pred EEEEEEECCCEEEEEEEECCCCCCEEECCC-CCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEEE-CCCCEE
Q ss_conf 799998416349999964188466698068-99996999993899989-999889829999869990999995-278536
Q 000424 20 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTD-LKKPIVNLACHPRLPVL-YVAYADGLIRAYNIHTYAVHYTLQ-LDNTIK 96 (1525)
Q Consensus 20 ~Vl~s~~~r~sV~ii~tveggk~~tkik~~-H~~~V~sIafsP~g~~L-aSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~ 96 (1525)
+++++. .+.++.+||. +.++....+... +...+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +.....
T Consensus 3 ~~vt~~-~d~~v~v~D~-~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 3 YILAPA-RPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEE-TTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred EEEEEC-CCCEEEEEEC-CCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 999976-7998999999-99949999987788998237999999899999978999499999999929888724777312
Q ss_pred ECCCEEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 65730099907998999995------------899099996888985015750125768489999089999999978997
Q 000424 97 LLGAGAFAFHPTLEWLFVGD------------RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 164 (1525)
Q Consensus 97 l~~~~sVaFsPdg~~LvSgS------------~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~Dgt 164 (1525)
......++|+|++.++++++ .+..+.+||..+. ....... +...+++++|+|++.++++++.|
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~-- 155 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--SRRKAFE-APRQITMLAWARDGSKLYGLGRD-- 155 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--EEEEEEE-CCSSCCCEEECTTSSCEEEESSS--
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCC--EEEEECC-CCCCCEEEEECCCCCEEEEECCC--
T ss_conf 540254898687757999504776203420345552120356677--5988414-56872189986888889997177--
Q ss_pred EEEEEEE
Q ss_conf 1578711
Q 000424 165 LQVWKTR 171 (1525)
Q Consensus 165 IkIWDlr 171 (1525)
+.+||..
T Consensus 156 ~~~~d~~ 162 (337)
T d1pbyb_ 156 LHVMDPE 162 (337)
T ss_dssp EEEEETT
T ss_pred CCEEEEE
T ss_conf 5056630
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.26 E-value=8.9e-11 Score=91.05 Aligned_cols=142 Identities=7% Similarity=-0.068 Sum_probs=71.8
Q ss_pred EEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEE----CCC
Q ss_conf 79999841634999996418846669806899996999993899989999889829999869990--999995----278
Q 000424 20 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA--VHYTLQ----LDN 93 (1525)
Q Consensus 20 ~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~--~l~tL~----H~~ 93 (1525)
+++.+..++.++.+|+ .+.++....+.. | ..+..++|+|+++++++++.|+++++||+.+.+ ....+. |..
T Consensus 33 ~~~v~~~d~g~v~v~D-~~t~~v~~~~~~-g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 33 LFSVTLRDAGQIALID-GSTYEIKTVLDT-G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 109 (432)
T ss_dssp EEEEEETTTTEEEEEE-TTTCCEEEEEEC-S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred EEEEEECCCCEEEEEE-CCCCCEEEEEEC-C-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCC
T ss_conf 8999976999799998-999839999737-9-971379988999999998289997899810898128899844889877
Q ss_pred CEEECCCEEEEEECCCCEE-EEEECCCCEEEEECCCCCCEEEEEEC-----------CCCCCEEEEEECCCCCEE-EEEE
Q ss_conf 5366573009990799899-99958990999968889850157501-----------257684899990899999-9997
Q 000424 94 TIKLLGAGAFAFHPTLEWL-FVGDRRGTLLAWDVSIERPSMIGIIQ-----------VGSQPITSVAWLPMLRLL-VTLC 160 (1525)
Q Consensus 94 ~V~l~~~~sVaFsPdg~~L-vSgS~DgtIkVWDl~s~~~s~i~~l~-----------gH~~~VtsIafsPdg~lL-vSgS 160 (1525)
.+. +..|+|||+++ ++++.++++++||..+. ....... .+......+.++|++..+ ++.+
T Consensus 110 ~~~-----s~~~SpDG~~l~vs~~~~~~v~i~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~ 182 (432)
T d1qksa2 110 IET-----SKMEGWEDKYAIAGAYWPPQYVIMDGETL--EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182 (432)
T ss_dssp EEE-----CCSTTCTTTEEEEEEEETTEEEEEETTTC--CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred EEE-----ECCCCCCCCEEEEECCCCCEEEEEECCCC--CCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 698-----43218888889998178982799907655--42254024776435220168885058998789998999981
Q ss_pred CCCCEEEEEEE
Q ss_conf 89971578711
Q 000424 161 RDGSLQVWKTR 171 (1525)
Q Consensus 161 ~DgtIkIWDlr 171 (1525)
.++.|.+||..
T Consensus 183 ~~~~i~~~d~~ 193 (432)
T d1qksa2 183 ETGKILLVDYT 193 (432)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEEECC
T ss_conf 68829999843
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.26 E-value=3e-08 Score=72.55 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=76.1
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEECCCCEEECCCEEEEEECCCCEEE-EEECCCCEEEEECCCCCCEEEEEECCCCCCE
Q ss_conf 999988982999986999099999527853665730099907998999-9958990999968889850157501257684
Q 000424 66 LYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 144 (1525)
Q Consensus 66 LaSGs~DgtIkIWDi~t~~~l~tL~H~~~V~l~~~~sVaFsPdg~~Lv-SgS~DgtIkVWDl~s~~~s~i~~l~gH~~~V 144 (1525)
+++++.|++|.+||+.+++.+.++....... .++|+||+++++ +++.++.|++||+.+ ...+..+..|. .+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-----~va~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~~-~~ 76 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNPM-----GAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGS-SP 76 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEE-----EEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSS-SE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECCCCCE-----EEEEECCCCEEEEEECCCCEEEEEECCC--CCEEEEEECCC-CC
T ss_conf 9997899989999999995999998899836-----9999289899999978999899999998--94103200024-64
Q ss_pred EEEEECCCCCEE-EEEECCCCEEEEEEE
Q ss_conf 899990899999-999789971578711
Q 000424 145 TSVAWLPMLRLL-VTLCRDGSLQVWKTR 171 (1525)
Q Consensus 145 tsIafsPdg~lL-vSgS~DgtIkIWDlr 171 (1525)
..+.|++++..+ ++++.++.+.+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (301)
T d1l0qa2 77 QGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 3110001111111111111001100124
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.24 E-value=9.2e-10 Score=83.65 Aligned_cols=107 Identities=14% Similarity=0.049 Sum_probs=84.7
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEE---EE
Q ss_conf 389998999988982999986999099999527853665730099907998999995899099996888985015---75
Q 000424 60 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI---GI 136 (1525)
Q Consensus 60 sP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i---~~ 136 (1525)
++..-++++.+.|++|.+||..+++++.++.....+. .++|+|||+++++++.|+++++||+.+...... ..
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-----~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~ 103 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-----ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-----EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEE-----EEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 8782899997699979999899983999973799713-----79988999999998289997899810898128899844
Q ss_pred ECCCCCCEEEEEECCCCCEE-EEEECCCCEEEEEEE
Q ss_conf 01257684899990899999-999789971578711
Q 000424 137 IQVGSQPITSVAWLPMLRLL-VTLCRDGSLQVWKTR 171 (1525)
Q Consensus 137 l~gH~~~VtsIafsPdg~lL-vSgS~DgtIkIWDlr 171 (1525)
...|...+.+..|+||++++ ++++.+++|++||..
T Consensus 104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~ 139 (432)
T d1qksa2 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139 (432)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECC
T ss_conf 889877698432188888899981789827999076
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.17 E-value=1.7e-08 Score=74.30 Aligned_cols=100 Identities=10% Similarity=-0.035 Sum_probs=74.8
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE--CCCCEEECCCEEEEEECCCCEEEEE-ECCCCEEEEECCCCCCEE
Q ss_conf 9993899989999889829999869990999995--2785366573009990799899999-589909999688898501
Q 000424 57 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVG-DRRGTLLAWDVSIERPSM 133 (1525)
Q Consensus 57 IafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~--H~~~V~l~~~~sVaFsPdg~~LvSg-S~DgtIkVWDl~s~~~s~ 133 (1525)
++++++++++++++.|++|.+||+.+++++.++. |...+. .++|+||+++++++ +.++.|++||+.+. ..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~-----~l~~spDG~~l~v~~~~~~~v~~~d~~t~--~~ 74 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-----TAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KN 74 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-----EEEECTTSSEEEEEETTTTEEEEEETTTT--EE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC-----EEEECCCCCEEEEEECCCCCEEEEECCCC--EE
T ss_conf 558899969999869997999999999899999948999704-----59997898999999789993999967567--13
Q ss_pred EEEEC------CCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 57501------2576848999908999999997899
Q 000424 134 IGIIQ------VGSQPITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 134 i~~l~------gH~~~VtsIafsPdg~lLvSgS~Dg 163 (1525)
..... .+...+..++|+|++.+++.++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~ 110 (346)
T d1jmxb_ 75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT 110 (346)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 123103654345477417999905888899970577
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=4.5e-09 Score=78.58 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=75.9
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEEE-C--CCCEEECCCEEEEEECCCCEEE-EEECCCCEEEEECCCCCCEEEEEECC
Q ss_conf 989999889829999869990999995-2--7853665730099907998999-99589909999688898501575012
Q 000424 64 PVLYVAYADGLIRAYNIHTYAVHYTLQ-L--DNTIKLLGAGAFAFHPTLEWLF-VGDRRGTLLAWDVSIERPSMIGIIQV 139 (1525)
Q Consensus 64 ~~LaSGs~DgtIkIWDi~t~~~l~tL~-H--~~~V~l~~~~sVaFsPdg~~Lv-SgS~DgtIkVWDl~s~~~s~i~~l~g 139 (1525)
.++++++.|++|++||+.+.+++.++. + ...+. .++|+|||++++ +++.++.|.+||+.+. ........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-----~i~~spDg~~l~v~~~~~~~v~v~D~~t~--~~~~~~~~ 74 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-----VPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-----CEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCC-----EEEECCCCCEEEEEECCCCEEEEEECCCC--CEEEEEEC
T ss_conf 699997679989999999994999998778899823-----79999998999999789994999999999--29888724
Q ss_pred C-----CCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 5-----768489999089999999978997157871
Q 000424 140 G-----SQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 140 H-----~~~VtsIafsPdg~lLvSgS~DgtIkIWDl 170 (1525)
+ ...+..++|+|++.++++++.+.....|..
T Consensus 75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T d1pbyb_ 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEC
T ss_conf 777312540254898687757999504776203420
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.11 E-value=5.2e-09 Score=78.17 Aligned_cols=154 Identities=10% Similarity=-0.051 Sum_probs=103.6
Q ss_pred EEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 9970799979999841634999996418846669806899996999993899989-999889829999869990999995
Q 000424 12 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL-YVAYADGLIRAYNIHTYAVHYTLQ 90 (1525)
Q Consensus 12 la~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~L-aSGs~DgtIkIWDi~t~~~l~tL~ 90 (1525)
+||+|...+++++. .+.++.+|+. +.++....++..|...+.+++|+|+++++ ++++.++.|++||+.+++...++.
T Consensus 2 ~a~~~~~~~l~~~~-~~~~v~v~D~-~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTN-YPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEE-TTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCEEEEEC-CCCEEEEEEC-CCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEEC
T ss_conf 55889996999986-9997999999-999899999948999704599978989999997899939999675671312310
Q ss_pred -CCCC-EEECCCEEEEEECCCCEEEEEE------------CCCCEEEEECCCCC-CEEEEEECCCCCCEEEEEECCCCCE
Q ss_conf -2785-3665730099907998999995------------89909999688898-5015750125768489999089999
Q 000424 91 -LDNT-IKLLGAGAFAFHPTLEWLFVGD------------RRGTLLAWDVSIER-PSMIGIIQVGSQPITSVAWLPMLRL 155 (1525)
Q Consensus 91 -H~~~-V~l~~~~sVaFsPdg~~LvSgS------------~DgtIkVWDl~s~~-~s~i~~l~gH~~~VtsIafsPdg~l 155 (1525)
.... ........+.|+||+.++++++ .+..+.+||..+.. ...+... .....+..+.+++++.+
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSL 158 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSCE
T ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEE-ECCCCEEEEEECCCCEE
T ss_conf 36543454774179999058888999705775215651467624899852563265688731-02474399995278789
Q ss_pred EEEEECCCCEEEEEEE
Q ss_conf 9999789971578711
Q 000424 156 LVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 156 LvSgS~DgtIkIWDlr 171 (1525)
++++ ..+.+|+..
T Consensus 159 ~~~~---~~~~~~~~~ 171 (346)
T d1jmxb_ 159 YVAG---PDIYKMDVK 171 (346)
T ss_dssp EEES---SSEEEECTT
T ss_pred EEEC---CCCEEEECC
T ss_conf 9847---962699806
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.09 E-value=3.1e-07 Score=65.18 Aligned_cols=155 Identities=12% Similarity=-0.054 Sum_probs=104.0
Q ss_pred CEEEEEECCCCCEEEEEEECC----CEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEE----------CCC
Q ss_conf 689999707999799998416----349999964188466698068999969999938999899998----------898
Q 000424 8 TEVHLALTPLQPVVFFGFHRR----MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY----------ADG 73 (1525)
Q Consensus 8 ~~~hla~hP~~p~Vl~s~~~r----~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs----------~Dg 73 (1525)
.-..+++.|....++++.... ..+.+++ .+.++....+.. +..+ .++|+|+++++++++ .++
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D-~~tg~~~~~~~~-~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~ 97 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLD-AGSGSILGHVNG-GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEE-CCCCCEEEEEEC-CCCC--CEEECCCCCEEEEEEECCCCCCCCCCCE
T ss_conf 86563018999789997342257876599998-999979999957-9886--0798689998999960577532124531
Q ss_pred CEEEEECCCCCEEEEEE-CCCCEEEC--CCEEEEEECCCCEEEEEE--CCCCEEEEECCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 29999869990999995-27853665--730099907998999995--89909999688898501575012576848999
Q 000424 74 LIRAYNIHTYAVHYTLQ-LDNTIKLL--GAGAFAFHPTLEWLFVGD--RRGTLLAWDVSIERPSMIGIIQVGSQPITSVA 148 (1525)
Q Consensus 74 tIkIWDi~t~~~l~tL~-H~~~V~l~--~~~sVaFsPdg~~LvSgS--~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIa 148 (1525)
.|++||..++++...+. +....... ....+.|++++..++... .++.+.+|+... .... .+.....++.
T Consensus 98 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~ 171 (373)
T d2madh_ 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG--SSDD----QLLSSPTCYH 171 (373)
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCC--CEEE----EEECCCEEEE
T ss_conf 899997778938889726885136851689708998589937999986987467762368--7289----9824520699
Q ss_pred ECCCCC-EEEEEECCCCEEEEEEEE
Q ss_conf 908999-999997899715787112
Q 000424 149 WLPMLR-LLVTLCRDGSLQVWKTRV 172 (1525)
Q Consensus 149 fsPdg~-lLvSgS~DgtIkIWDlr~ 172 (1525)
|+|++. .+++.+.|+++.+|+...
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~ 196 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAG 196 (373)
T ss_pred EECCCCCEEEEECCCCEEEEEECCC
T ss_conf 9628991999994799399997477
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.96 E-value=4.3e-07 Score=64.08 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=74.4
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE------CCCCEEECCCEEEEEECCCCEEEEEEC---------CC
Q ss_conf 999993899989999889829999869990999995------278536657300999079989999958---------99
Q 000424 55 VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ------LDNTIKLLGAGAFAFHPTLEWLFVGDR---------RG 119 (1525)
Q Consensus 55 ~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~------H~~~V~l~~~~sVaFsPdg~~LvSgS~---------Dg 119 (1525)
.++.|.+++.++. ..|+.+.+||..+++....+. |...|. ++.|+||+++|+.++. ++
T Consensus 20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~-----~~~~SpDg~~i~~~~~~~~~~r~s~~~ 92 (470)
T d2bgra1 20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSIN-----DYSISPDGQFILLEYNYVKQWRHSYTA 92 (470)
T ss_dssp CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCC-----EEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred CCCEECCCCEEEE--ECCCCEEEEECCCCCEEEEECHHHHHHCCCCCC-----EEEECCCCCEEEEEECCCCEEEECCCC
T ss_conf 5789689997999--759949999889997899970156443167654-----059989889799997771000104673
Q ss_pred CEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEE
Q ss_conf 0999968889850157501257684899990899999999789971578711
Q 000424 120 TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 120 tIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr 171 (1525)
.+.+||+.+. ... .+..|...+..+.|+|+|..++..+ +..+.+|+..
T Consensus 93 ~~~l~d~~~~--~~~-~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~ 140 (470)
T d2bgra1 93 SYDIYDLNKR--QLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEP 140 (470)
T ss_dssp EEEEEETTTT--EEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESST
T ss_pred EEEEEECCCC--CCC-CCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECC
T ss_conf 4999989888--513-1246874231010146764135751-4641379889
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.4e-06 Score=60.25 Aligned_cols=102 Identities=12% Similarity=0.196 Sum_probs=75.7
Q ss_pred CEEEEEECCCCEEEEECCCCC---EEEEEECCCCEEECCCEEEEEECCCCEEEEEE-CCCCEEEEECCCCCC--EEEEEE
Q ss_conf 989999889829999869990---99999527853665730099907998999995-899099996888985--015750
Q 000424 64 PVLYVAYADGLIRAYNIHTYA---VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERP--SMIGII 137 (1525)
Q Consensus 64 ~~LaSGs~DgtIkIWDi~t~~---~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS-~DgtIkVWDl~s~~~--s~i~~l 137 (1525)
..+++++.|++|++|++.+.. .+.++.|...+. .++|+|||++|++++ .|+.|++|++..... .... .
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-----~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~-~ 78 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-----PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-E 78 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-----CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-E
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEE-----EEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEE-E
T ss_conf 999987899938999983999769999975799886-----8999589799999977899699999968987079853-0
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEEE
Q ss_conf 125768489999089999999978-9971578711
Q 000424 138 QVGSQPITSVAWLPMLRLLVTLCR-DGSLQVWKTR 171 (1525)
Q Consensus 138 ~gH~~~VtsIafsPdg~lLvSgS~-DgtIkIWDlr 171 (1525)
..+...+.+++|+|+++++++++. ++++.+|+..
T Consensus 79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 79 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCC
T ss_conf 13699854999959998874205688830220011
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.66 E-value=9.1e-06 Score=54.43 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=57.5
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEE--C-----------------------------CCCEEECCCEEEEEECCCCEEEE
Q ss_conf 9999889829999869990999995--2-----------------------------78536657300999079989999
Q 000424 66 LYVAYADGLIRAYNIHTYAVHYTLQ--L-----------------------------DNTIKLLGAGAFAFHPTLEWLFV 114 (1525)
Q Consensus 66 LaSGs~DgtIkIWDi~t~~~l~tL~--H-----------------------------~~~V~l~~~~sVaFsPdg~~LvS 114 (1525)
|+|++.+|.|++|++.+++.+.++- + ..... +..++|||+|++.
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s-----~t~gtpDGr~lfV 88 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHIS-----MTDGRYDGKYLFI 88 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEE-----EETTEEEEEEEEE
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCC-----EECCCCCCCEEEE
T ss_conf 99688777489996789807999976757898799988865047831332256755677722-----1032688888999
Q ss_pred EE-CCCCEEEEECCCCCCEEEEEEC-CCCCCEEEEEECCCCC--EEEEEECCC
Q ss_conf 95-8990999968889850157501-2576848999908999--999997899
Q 000424 115 GD-RRGTLLAWDVSIERPSMIGIIQ-VGSQPITSVAWLPMLR--LLVTLCRDG 163 (1525)
Q Consensus 115 gS-~DgtIkVWDl~s~~~s~i~~l~-gH~~~VtsIafsPdg~--lLvSgS~Dg 163 (1525)
.. .+..|.+||+.+. ....+.. .+....+++.|+|+++ |++..+.+.
T Consensus 89 ~d~~~~rVavIDl~t~--k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~ 139 (441)
T d1qnia2 89 NDKANTRVARIRLDIM--KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV 139 (441)
T ss_dssp EETTTTEEEEEETTTT--EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC
T ss_pred ECCCCCEEEEEECCCC--CEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCC
T ss_conf 7389997999988778--47557956788786434870569989999566775
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.62 E-value=2.1e-05 Score=51.71 Aligned_cols=112 Identities=15% Similarity=0.024 Sum_probs=77.0
Q ss_pred EECCCCCEEEEEEEC----CCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEE----------ECCCCEEEE
Q ss_conf 970799979999841----634999996418846669806899996999993899989999----------889829999
Q 000424 13 ALTPLQPVVFFGFHR----RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA----------YADGLIRAY 78 (1525)
Q Consensus 13 a~hP~~p~Vl~s~~~----r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSG----------s~DgtIkIW 78 (1525)
|.+|....++++... +..+.+|+ .+.++....+.. +..+ .++|+|+++++++. +.|+.|++|
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D-~~tg~~~~~~~~-g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVID-GEAGRVIGMIDG-GFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEE-TTTTEEEEEEEE-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EECCCCCEEEEEECCCCCCCCEEEEEE-CCCCCEEEEEEC-CCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 658999999998266477767199999-999949999989-9998--569948999999996777642015899989999
Q ss_pred ECCCCCEEEEEE-CCCCEEEC--CCEEEEEECCCCEEEEEE--CCCCEEEEECCC
Q ss_conf 869990999995-27853665--730099907998999995--899099996888
Q 000424 79 NIHTYAVHYTLQ-LDNTIKLL--GAGAFAFHPTLEWLFVGD--RRGTLLAWDVSI 128 (1525)
Q Consensus 79 Di~t~~~l~tL~-H~~~V~l~--~~~sVaFsPdg~~LvSgS--~DgtIkVWDl~s 128 (1525)
|..++++...+. +....... ....+.|+|++.+++..+ .+..+.+||..+
T Consensus 84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~ 138 (355)
T d2bbkh_ 84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138 (355)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred ECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCC
T ss_conf 9999979889805886403117987349993388715773279882045430578
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.54 E-value=1.5e-05 Score=52.83 Aligned_cols=111 Identities=12% Similarity=-0.068 Sum_probs=77.2
Q ss_pred CCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEE----------
Q ss_conf 9969999938999899998-----89829999869990999995-2785366573009990799899999----------
Q 000424 52 KPIVNLACHPRLPVLYVAY-----ADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVG---------- 115 (1525)
Q Consensus 52 ~~V~sIafsP~g~~LaSGs-----~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSg---------- 115 (1525)
+|+.-.+.+|+++.+++.. .+..|.+||..+++++.++. +.. . .++|+||++++++.
T Consensus 2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~-----~~a~SpDg~~l~v~~~~~~~~~~g 74 (355)
T d2bbkh_ 2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--P-----NPVVADDGSFIAHASTVFSRIARG 74 (355)
T ss_dssp CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--C-----EEEECTTSSCEEEEEEEEEETTEE
T ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCC--C-----CEEECCCCCEEEEEECCCCCCCCC
T ss_conf 971747658999999998266477767199999999949999989999--8-----569948999999996777642015
Q ss_pred ECCCCEEEEECCCCCCEEEEEECC---C----CCCEEEEEECCCCCEEEEEE--CCCCEEEEEEE
Q ss_conf 589909999688898501575012---5----76848999908999999997--89971578711
Q 000424 116 DRRGTLLAWDVSIERPSMIGIIQV---G----SQPITSVAWLPMLRLLVTLC--RDGSLQVWKTR 171 (1525)
Q Consensus 116 S~DgtIkVWDl~s~~~s~i~~l~g---H----~~~VtsIafsPdg~lLvSgS--~DgtIkIWDlr 171 (1525)
+.|+.|++||..+. ........ + ......++|+|++.+++.++ .+..+.+|+..
T Consensus 75 ~~d~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~ 137 (355)
T d2bbkh_ 75 ERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 137 (355)
T ss_dssp EEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred CCCCEEEEEECCCC--CEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECC
T ss_conf 89998999999999--7988980588640311798734999338871577327988204543057
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.39 E-value=8.1e-05 Score=47.48 Aligned_cols=114 Identities=11% Similarity=-0.116 Sum_probs=77.4
Q ss_pred CCCCCEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEE------
Q ss_conf 899996999993899989999-----889829999869990999995-27853665730099907998999995------
Q 000424 49 DLKKPIVNLACHPRLPVLYVA-----YADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD------ 116 (1525)
Q Consensus 49 ~H~~~V~sIafsP~g~~LaSG-----s~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS------ 116 (1525)
.+..++.+++++|+++.+++. +.++.+.+||..+++.+.++. +.. . .+.|+|||+++++++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~-----~~a~SpDG~~l~va~~~~~~~ 90 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--P-----NPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCC--C-----CEEECCCCCEEEEEEECCCCC
T ss_conf 678986563018999789997342257876599998999979999957988--6-----079868999899996057753
Q ss_pred ----CCCCEEEEECCCCCCEEEEEECCCCCCE-------EEEEECCCCCEEEEEE--CCCCEEEEEEE
Q ss_conf ----8990999968889850157501257684-------8999908999999997--89971578711
Q 000424 117 ----RRGTLLAWDVSIERPSMIGIIQVGSQPI-------TSVAWLPMLRLLVTLC--RDGSLQVWKTR 171 (1525)
Q Consensus 117 ----~DgtIkVWDl~s~~~s~i~~l~gH~~~V-------tsIafsPdg~lLvSgS--~DgtIkIWDlr 171 (1525)
.++.|.+||..+. +.......+.... ..+.|++++..+.... .++.+.+|+..
T Consensus 91 ~~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~ 156 (373)
T d2madh_ 91 AKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG 156 (373)
T ss_pred CCCCCCEEEEEEECCCC--CEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 21245318999977789--3888972688513685168970899858993799998698746776236
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.34 E-value=2.8e-05 Score=50.90 Aligned_cols=152 Identities=8% Similarity=-0.144 Sum_probs=86.9
Q ss_pred EEEECCCCC--EEEEEEECCCE--EEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEE----------CCCCEE
Q ss_conf 999707999--79999841634--9999964188466698068999969999938999899998----------898299
Q 000424 11 HLALTPLQP--VVFFGFHRRMS--VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY----------ADGLIR 76 (1525)
Q Consensus 11 hla~hP~~p--~Vl~s~~~r~s--V~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs----------~DgtIk 76 (1525)
.++..|... ++.+......+ +.+++ -++++....+.. +..+ .++|+|++..+++.+ .|++|+
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d-~~~~~~~~~~~~-~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~ 99 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSC-AGCGVTLGHSLG-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVE 99 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEE-TTTTEEEEEEEE-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEEE-CCCCCEEEEEEC-CCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEE
T ss_conf 64558987612697204578862179970-899837788857-8777--5139899988999755676401035678699
Q ss_pred EEECCCCCEEEEEE-CCCCEEECC--CEEEEEECCCCEEEEEE-CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf 99869990999995-278536657--30099907998999995-899099996888985015750125768489999089
Q 000424 77 AYNIHTYAVHYTLQ-LDNTIKLLG--AGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 152 (1525)
Q Consensus 77 IWDi~t~~~l~tL~-H~~~V~l~~--~~sVaFsPdg~~LvSgS-~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPd 152 (1525)
+||..++++...+. +.......+ ...+.|+||+++++.++ .++.+.+||+.+ .........+.... .+...
T Consensus 100 v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~--~~~~~~~~~~~~~~---~~~~~ 174 (368)
T d1mdah_ 100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG--ASDDQLTKSASCFH---IHPGA 174 (368)
T ss_dssp EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT--TEEEEEEECSSCCC---CEEEE
T ss_pred EEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCC--CCEEEEEECCCCCE---ECCCC
T ss_conf 99899993830643785421024688640588789989999968998599998998--93867860467523---74699
Q ss_pred CCEEEEEECCCCEEEEEEE
Q ss_conf 9999999789971578711
Q 000424 153 LRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 153 g~lLvSgS~DgtIkIWDlr 171 (1525)
...++..+.|+++..|+..
T Consensus 175 ~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 175 AATHYLGSCPASLAASDLA 193 (368)
T ss_dssp TTEEECCCCTTSCEEEECC
T ss_pred CCEEEEECCCCCEEEEEEC
T ss_conf 8239999489988999826
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.15 E-value=1.4e-05 Score=53.04 Aligned_cols=153 Identities=11% Similarity=0.115 Sum_probs=104.2
Q ss_pred EEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECC----CCCCCEEEEEECCCCCEEEEEEC---------CCCEE
Q ss_conf 999970799979999841634999996418846669806----89999699999389998999988---------98299
Q 000424 10 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT----DLKKPIVNLACHPRLPVLYVAYA---------DGLIR 76 (1525)
Q Consensus 10 ~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~----~H~~~V~sIafsP~g~~LaSGs~---------DgtIk 76 (1525)
+.+.|.|...+++. .+.++.+++. ++++....+.. +|...|.++.|+|++++++.++. ++.+.
T Consensus 20 ~~~~W~~d~~~~~~---~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHEYLYK---QENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSEEEEE---SSSCEEEEET-TTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred CCCEECCCCEEEEE---CCCCEEEEEC-CCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEE
T ss_conf 57896899979997---5994999988-9997899970156443167654059989889799997771000104673499
Q ss_pred EEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEE-------EECC---------
Q ss_conf 99869990999995-278536657300999079989999958990999968889850157-------5012---------
Q 000424 77 AYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG-------IIQV--------- 139 (1525)
Q Consensus 77 IWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~-------~l~g--------- 139 (1525)
+||+.+++. ..+. +.+.+. .+.|+|||.+++.. .++.+.+|+..+....... .+.+
T Consensus 96 l~d~~~~~~-~~l~~~~~~~~-----~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~ 168 (470)
T d2bgra1 96 IYDLNKRQL-ITEERIPNNTQ-----WVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (470)
T ss_dssp EEETTTTEE-CCSSCCCTTEE-----EEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEECCCCCC-CCCCCCCCCCC-----CCCCCCCCCEEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 998988851-31246874231-----01014676413575-146413798899946532101477740535432011210
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCC-EEEEEEEEE
Q ss_conf 5768489999089999999978997-157871121
Q 000424 140 GSQPITSVAWLPMLRLLVTLCRDGS-LQVWKTRVI 173 (1525)
Q Consensus 140 H~~~VtsIafsPdg~lLvSgS~Dgt-IkIWDlr~~ 173 (1525)
+......+.|+|++.+|+..+.|.+ +..|++...
T Consensus 169 ~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~ 203 (470)
T d2bgra1 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (470)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred ECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEE
T ss_conf 04776530799998722026863776706998766
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.13 E-value=0.00016 Score=45.36 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=84.5
Q ss_pred CEEEEEEECCCEEEEEEEECCCCCCEEEC----------------------------CC-CCCCEEEEEECCCCCEEEEE
Q ss_conf 97999984163499999641884666980----------------------------68-99996999993899989999
Q 000424 19 PVVFFGFHRRMSVTVVGTVEGGRAPTKIK----------------------------TD-LKKPIVNLACHPRLPVLYVA 69 (1525)
Q Consensus 19 p~Vl~s~~~r~sV~ii~tveggk~~tkik----------------------------~~-H~~~V~sIafsP~g~~LaSG 69 (1525)
-++|.+...+..+.+++. ..++....|. ++ |.-........|+++++++.
T Consensus 11 ~y~f~Sgg~sG~V~V~dl-pS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~ 89 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGV-PSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN 89 (441)
T ss_dssp EEEEEECBTTCCEEEEEE-TTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEC-CCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCEEEEE
T ss_conf 799996887774899967-8980799997675789879998886504783133225675567772210326888889997
Q ss_pred -ECCCCEEEEECCCCCEEEEEE--CCCCEEECCCEEEEEECCCC--EEEEEECCCC-----------------EEEEECC
Q ss_conf -889829999869990999995--27853665730099907998--9999958990-----------------9999688
Q 000424 70 -YADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLE--WLFVGDRRGT-----------------LLAWDVS 127 (1525)
Q Consensus 70 -s~DgtIkIWDi~t~~~l~tL~--H~~~V~l~~~~sVaFsPdg~--~LvSgS~Dgt-----------------IkVWDl~ 127 (1525)
..+..|.++|+.++++...+. +..... .++|+|+++ |+++.+.+.. +..+|..
T Consensus 90 d~~~~rVavIDl~t~k~~~ii~iP~g~gph-----gi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~ 164 (441)
T d1qnia2 90 DKANTRVARIRLDIMKTDKITHIPNVQAIH-----GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE 164 (441)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTCCCEE-----EEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCCC-----CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 389997999988778475579567887864-----348705699899995667754436766300145553238866375
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 898501575012576848999908999999997899
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 163 (1525)
Q Consensus 128 s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~Dg 163 (1525)
+. .+...... ......+.|+|+++++++.+.+.
T Consensus 165 t~--~v~~qI~v-~~~p~~v~~spdGk~a~vt~~ns 197 (441)
T d1qnia2 165 TM--DVAWQVIV-DGNLDNTDADYTGKYATSTCYNS 197 (441)
T ss_dssp TC--SEEEEEEE-SSCCCCEEECSSSSEEEEEESCT
T ss_pred CC--EEEEEEEC-CCCCCCEEECCCCCEEEEEECCC
T ss_conf 56--06478736-99865469879999899985178
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.07 E-value=5.8e-05 Score=48.53 Aligned_cols=114 Identities=7% Similarity=-0.171 Sum_probs=76.9
Q ss_pred CCCCEEEEEECCCCCEEE---EEECCCC--EEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEE-------
Q ss_conf 999969999938999899---9988982--9999869990999995-27853665730099907998999995-------
Q 000424 50 LKKPIVNLACHPRLPVLY---VAYADGL--IRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGD------- 116 (1525)
Q Consensus 50 H~~~V~sIafsP~g~~La---SGs~Dgt--IkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS------- 116 (1525)
+.++...++..++++... ....+++ +.+||..+++.+.++. +... .+.|+||+.+++..+
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~-------~~a~spDg~~i~~~~~~~~~~~ 90 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-------LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-------EEEECTTSSCEEEEEEEETTTT
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC-------CCEECCCCCEEEEECCCCCCCC
T ss_conf 679866645589876126972045788621799708998377888578777-------5139899988999755676401
Q ss_pred ---CCCCEEEEECCCCCCEEEEEECCC-------CCCEEEEEECCCCCEEEEEE-CCCCEEEEEEEE
Q ss_conf ---899099996888985015750125-------76848999908999999997-899715787112
Q 000424 117 ---RRGTLLAWDVSIERPSMIGIIQVG-------SQPITSVAWLPMLRLLVTLC-RDGSLQVWKTRV 172 (1525)
Q Consensus 117 ---~DgtIkVWDl~s~~~s~i~~l~gH-------~~~VtsIafsPdg~lLvSgS-~DgtIkIWDlr~ 172 (1525)
.|++|++||..+. ........+ ......++|+|++++++.++ .++++.+||+..
T Consensus 91 ~g~~d~~v~v~D~~t~--~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~ 155 (368)
T d1mdah_ 91 KGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155 (368)
T ss_dssp SSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred CCCCCCEEEEEECCCC--CEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf 0356786999989999--3830643785421024688640588789989999968998599998998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.03 E-value=0.00043 Score=42.19 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=64.8
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CEEEEEE--CCCCEEECCCEEEEEECCCCEEEE--EE-CCCCEEE
Q ss_conf 9999699999389998999988982999986999-0999995--278536657300999079989999--95-8990999
Q 000424 50 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-AVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFV--GD-RRGTLLA 123 (1525)
Q Consensus 50 H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~-~~l~tL~--H~~~V~l~~~~sVaFsPdg~~LvS--gS-~DgtIkV 123 (1525)
...++..++|+|+++.+++.+.+ .+..|.+... ....... ...... .+.++++++.++. .. ..++|..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~p~-----~v~~~~~~~~~~v~~a~~~~~~v~~ 111 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-----ANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-----GGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred CCCCCCEEEECCCCCEEEEEECC-CEEEEEEECCCCEEEEEEECCCCCCE-----EEEECCCCCEEEEEEECCCCCEEEE
T ss_conf 89997779994898999999389-47899990899769876412899867-----8998789987999993279978998
Q ss_pred EECCCCCC---------------EEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEE
Q ss_conf 96888985---------------015750125768489999089999999978-997157871
Q 000424 124 WDVSIERP---------------SMIGIIQVGSQPITSVAWLPMLRLLVTLCR-DGSLQVWKT 170 (1525)
Q Consensus 124 WDl~s~~~---------------s~i~~l~gH~~~VtsIafsPdg~lLvSgS~-DgtIkIWDl 170 (1525)
+....... ............++++.|+|++++++.++. ...|.+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~ 174 (365)
T d1jofa_ 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 674578874206866403300476467556889811597888999989982079987999970
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.24 E-value=0.0051 Score=34.34 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=10.4
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 0999079989999958990999968
Q 000424 102 AFAFHPTLEWLFVGDRRGTLLAWDV 126 (1525)
Q Consensus 102 sVaFsPdg~~LvSgS~DgtIkVWDl 126 (1525)
.++|+|+++.+++.+. +.+..|.+
T Consensus 44 ~la~s~d~~~ly~~~~-~~~~~~~i 67 (365)
T d1jofa_ 44 WMTFDHERKNIYGAAM-KKWSSFAV 67 (365)
T ss_dssp EEEECTTSSEEEEEEB-TEEEEEEE
T ss_pred EEEECCCCCEEEEEEC-CCEEEEEE
T ss_conf 7999489899999938-94789999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.99 E-value=0.0084 Score=32.71 Aligned_cols=111 Identities=11% Similarity=0.077 Sum_probs=62.3
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCC--
Q ss_conf 969999938999899998898299998699909999952785366573009990799899999589909999688898--
Q 000424 53 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER-- 130 (1525)
Q Consensus 53 ~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~-- 130 (1525)
.+.++++.|+++++++...++.|..||... +..........+. +++|.+++..+++...++.+..|+.....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~-----gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~ 102 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVS-----GLAFTSNGDLVATGWNADSIPVVSLVKSDGT 102 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEE-----EEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCCCEEECCCCCEEEEECCCCEEEEEECCC-CEEEEECCCCCCC-----EEEECCCCCEEEEECCCCEEEEEEECCCCCC
T ss_conf 847877999988999968899899990899-8899971799853-----6898677886998328953788871011110
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 5015750125768489999089999999978997157871
Q 000424 131 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 131 ~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDl 170 (1525)
...+.. .......+.+.+.+++.++++.+.++.+..++.
T Consensus 103 ~~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 103 VETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 141 (302)
T ss_dssp EEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred EEECCC-CCCCCCCCEEEECCCCCEEEECCCCCCCEEEEC
T ss_conf 121023-578632216677157978750356554102421
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.016 Score=30.59 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=31.3
Q ss_pred EEEEECCCCCEEEEEECCCCEEECCCEEEEEECCCCEEEEEE-CCCC--EEEEECCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf 999986999099999527853665730099907998999995-8990--9999688898501575012576848999908
Q 000424 75 IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGT--LLAWDVSIERPSMIGIIQVGSQPITSVAWLP 151 (1525)
Q Consensus 75 IkIWDi~t~~~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS-~Dgt--IkVWDl~s~~~s~i~~l~gH~~~VtsIafsP 151 (1525)
|.+.|...........+...+. ..+|||||++|+-.+ ..+. +.+.+........ ...+.....+..|+|
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~-----sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sp 92 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLM-----SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSP 92 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEE-----EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECT
T ss_pred EEEECCCCCCCEEEECCCCCEE-----EEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEE---EEEEECCCCCCEECC
T ss_conf 9999289997679865898426-----03887899989999815267513443113675067---764202454302448
Q ss_pred CCCEEEEEEC
Q ss_conf 9999999978
Q 000424 152 MLRLLVTLCR 161 (1525)
Q Consensus 152 dg~lLvSgS~ 161 (1525)
++..++..+.
T Consensus 93 dg~~i~~~~~ 102 (269)
T d2hqsa1 93 DGSKLAFALS 102 (269)
T ss_dssp TSSEEEEEEC
T ss_pred CCCEEEEEEE
T ss_conf 8986467640
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.33 E-value=0.023 Score=29.53 Aligned_cols=23 Identities=4% Similarity=-0.166 Sum_probs=9.8
Q ss_pred EEEEECCCCEEEEEECCCCEEEE
Q ss_conf 09990799899999589909999
Q 000424 102 AFAFHPTLEWLFVGDRRGTLLAW 124 (1525)
Q Consensus 102 sVaFsPdg~~LvSgS~DgtIkVW 124 (1525)
.+++.+++..+++....+.++++
T Consensus 61 gvav~~~g~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 61 GLAVDGAGTVYVTDFNNRVVTLA 83 (260)
T ss_dssp CEEECTTCCEEEEETTTEEEEEC
T ss_pred EEEECCCCCEEEEEEEECEEEEE
T ss_conf 89993899889863100003554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=95.78 E-value=0.04 Score=27.75 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCEEEEEECCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 90999995278536657300999079989999958990999968889850157501257684899990899999999789
Q 000424 83 YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 83 ~~~l~tL~H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~D 162 (1525)
.+++.++--...+. .+++.|||..+++...+++|..||.......+. .....+.+++|+++++++++...+
T Consensus 18 ~~v~~~~p~~~~~e-----~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~----~~~~~~~gla~~~dG~l~v~~~~~ 88 (302)
T d2p4oa1 18 AKIITSFPVNTFLE-----NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA----TVEGKVSGLAFTSNGDLVATGWNA 88 (302)
T ss_dssp EEEEEEECTTCCEE-----EEEECTTSCEEEEETTTTEEEEECTTCCEEEEE----ECSSEEEEEEECTTSCEEEEEECT
T ss_pred CCEEEECCCCCCCC-----CEEECCCCCEEEEECCCCEEEEEECCCCEEEEE----CCCCCCCEEEECCCCCEEEEECCC
T ss_conf 20788888998847-----877999988999968899899990899889997----179985368986778869983289
Q ss_pred CCEEEEEEE
Q ss_conf 971578711
Q 000424 163 GSLQVWKTR 171 (1525)
Q Consensus 163 gtIkIWDlr 171 (1525)
+.+..|+..
T Consensus 89 ~~~~~~~~~ 97 (302)
T d2p4oa1 89 DSIPVVSLV 97 (302)
T ss_dssp TSCEEEEEE
T ss_pred CEEEEEEEC
T ss_conf 537888710
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.13 E-value=0.065 Score=26.22 Aligned_cols=65 Identities=8% Similarity=-0.042 Sum_probs=30.5
Q ss_pred EEEEECCCCEEEEE-ECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 09990799899999-58990999968889850157501257684899990899999999789971578
Q 000424 102 AFAFHPTLEWLFVG-DRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 168 (1525)
Q Consensus 102 sVaFsPdg~~LvSg-S~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIW 168 (1525)
.+++.+++...++. +..+.+..++......... ...+ .....++++++++.++++....+.++++
T Consensus 18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLA 83 (260)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEEC----CEEEC-CCCS-CCSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCCEEEEE-CCCC-CCCCEEEEECCCCCEEEEEEEECEEEEE
T ss_conf 8999699999999718998899993899668974-3698-6684089993899889863100003554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.76 E-value=0.081 Score=25.54 Aligned_cols=113 Identities=8% Similarity=0.034 Sum_probs=65.2
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-C--CCCEEECCCEEEEEECCC-CEEEEEE-CCCCEEEEECC
Q ss_conf 96999993899989999889829999869990999995-2--785366573009990799-8999995-89909999688
Q 000424 53 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L--DNTIKLLGAGAFAFHPTL-EWLFVGD-RRGTLLAWDVS 127 (1525)
Q Consensus 53 ~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H--~~~V~l~~~~sVaFsPdg-~~LvSgS-~DgtIkVWDl~ 127 (1525)
.-+.+++.+++.++++-...+.|++||.. ++.+..+. . ..... .....+.+..+. .++++.. .++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQL-LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCB-SSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 90079994999899997998989999699-99999816657886642-26630001234455200004775310000025
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 898501575012576848999908999999997899715787
Q 000424 128 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 169 (1525)
Q Consensus 128 s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWD 169 (1525)
.. ....+-........++++.+++.++++.+..+.+.+++
T Consensus 102 g~--~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~ 141 (279)
T d1q7fa_ 102 GQ--FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD 141 (279)
T ss_dssp SC--EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CC--CEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEEC
T ss_conf 63--02403888642542000014784799963263256762
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.12 Score=24.25 Aligned_cols=107 Identities=12% Similarity=0.220 Sum_probs=63.6
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE----CCCCEEECCCEEEEEECCCCEEEEEEC---------CCCEEE
Q ss_conf 9993899989999889829999869990999995----278536657300999079989999958---------990999
Q 000424 57 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ----LDNTIKLLGAGAFAFHPTLEWLFVGDR---------RGTLLA 123 (1525)
Q Consensus 57 IafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~----H~~~V~l~~~~sVaFsPdg~~LvSgS~---------DgtIkV 123 (1525)
..|.+++.++. -..|+.|.+||..+++....+. ....+. ...|+||+++++.... .+...+
T Consensus 22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAI-----RYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-----EEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred CEEECCCCEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCC-----EEEECCCCCEEEEEECCCCEEEEECCCCEEE
T ss_conf 78917984899-92899699998789988998727644445532-----1389898886999984510047603352899
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 96888985015750125768489999089999999978997157871
Q 000424 124 WDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 170 (1525)
Q Consensus 124 WDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDl 170 (1525)
+|+.+.....+.........+....|+|+|..++-.. ++.+.+.+.
T Consensus 96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~ 141 (465)
T d1xfda1 96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAH 141 (465)
T ss_dssp EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESS
T ss_pred EECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEEC
T ss_conf 9856884564157667764311002426785699996-132999954
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.12 Score=24.40 Aligned_cols=150 Identities=9% Similarity=0.010 Sum_probs=79.8
Q ss_pred EEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECC--CCCCCEEEEEECCCCCEEEEEE---------CCCCEEEEE
Q ss_conf 99970799979999841634999996418846669806--8999969999938999899998---------898299998
Q 000424 11 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT--DLKKPIVNLACHPRLPVLYVAY---------ADGLIRAYN 79 (1525)
Q Consensus 11 hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~--~H~~~V~sIafsP~g~~LaSGs---------~DgtIkIWD 79 (1525)
+..|.+...+++. ..+.++.+++. +.+.....+.. .....+....|+|++++++... ..+.+.++|
T Consensus 21 ~~~W~~~~~~~~~--~~~g~i~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 21 EAKWISDTEFIYR--EQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CCCBSSSSCBCCC--CSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred CCEEECCCCEEEE--ECCCCEEEEEC-CCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 8789179848999--28996999987-89988998727644445532138989888699998451004760335289998
Q ss_pred CCCCCEEEEEE---CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCC-------------
Q ss_conf 69990999995---27853665730099907998999995899099996888985015750125768-------------
Q 000424 80 IHTYAVHYTLQ---LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQP------------- 143 (1525)
Q Consensus 80 i~t~~~l~tL~---H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~------------- 143 (1525)
+.++....... ....+. ...|+|||.+++-.. ++.+.+.+.......-+ +..+....
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~-----~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~l-t~~g~~~~i~nG~~d~vyeee 170 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQ-----YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRV-VSTGKEGVIYNGLSDWLYEEE 170 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCS-----BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEE-ECCCBTTTEEEEECCHHHHHT
T ss_pred CCCCCEEECCCCCCCCCCCC-----EEEECCCCCEEEEEE-CCEEEEEECCCCCEEEE-ECCCCCCEEECCCCCHHHHHH
T ss_conf 56884564157667764311-----002426785699996-13299995489965897-112676604436643100123
Q ss_pred ----EEEEEECCCCCEEEEEEC-CCCEEEEEE
Q ss_conf ----489999089999999978-997157871
Q 000424 144 ----ITSVAWLPMLRLLVTLCR-DGSLQVWKT 170 (1525)
Q Consensus 144 ----VtsIafsPdg~lLvSgS~-DgtIkIWDl 170 (1525)
-..+-|+|++.+|+.... +..+..+.+
T Consensus 171 ~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred HCCCCCEEEECCCCCEEEEEEECCCCCCEEEC
T ss_conf 03664348977989868999953666614641
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.17 Score=23.19 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=73.2
Q ss_pred EEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEEECCCCEEECCCEEEEEE
Q ss_conf 49999964188466698068999969999938999899998898---299998699909999952785366573009990
Q 000424 30 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFH 106 (1525)
Q Consensus 30 sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~Dg---tIkIWDi~t~~~l~tL~H~~~V~l~~~~sVaFs 106 (1525)
.+.+.+ .+|.. ...+.. +...+.+.+|+|+|+.||-...+. .+.+.+..+........+..... ...|+
T Consensus 20 ~l~i~d-~dG~~-~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s 91 (269)
T d2hqsa1 20 ELRVSD-YDGYN-QFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-----APAFS 91 (269)
T ss_dssp EEEEEE-TTSCS-CEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-----EEEEC
T ss_pred EEEEEC-CCCCC-CEEEEC-CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCC-----CCEEC
T ss_conf 999992-89997-679865-89842603887899989999815267513443113675067764202454-----30244
Q ss_pred CCCCEEEEEE-CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECCCCEEEEEEE
Q ss_conf 7998999995-899099996888985015750125768489999089999-9999789971578711
Q 000424 107 PTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRL-LVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 107 Pdg~~LvSgS-~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~l-LvSgS~DgtIkIWDlr 171 (1525)
|++..++..+ .++...++........... ...+........+++++.. +++...++...+|...
T Consensus 92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 92 PDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCEEEEEEECCCCCCEEECCCCCCCCEE-EEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEE
T ss_conf 889864676402786410000222122000-010144211454345544330000126874386542
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=88.98 E-value=0.39 Score=20.56 Aligned_cols=103 Identities=12% Similarity=-0.000 Sum_probs=53.9
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECC--CC--EEEEE
Q ss_conf 9996999993899989999889829999869990999995-2785366573009990799899999589--90--99996
Q 000424 51 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR--GT--LLAWD 125 (1525)
Q Consensus 51 ~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~D--gt--IkVWD 125 (1525)
....-+++|++++.++++....+.|.-|+..+......+. ...... .+++++++..+++...+ .. +...+
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-----gla~~~dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-----AIKIHKDGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-----EEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred CCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEE-----EEEECCCCCEEEEECCCCCCCEEEEEEC
T ss_conf 86747078999999999977999999998999959999948998703-----8999999999999568973110499873
Q ss_pred CCCC-CCEEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 8889-850157501257684899990899999999
Q 000424 126 VSIE-RPSMIGIIQVGSQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 126 l~s~-~~s~i~~l~gH~~~VtsIafsPdg~lLvSg 159 (1525)
.... ...... ...-....+.+.+.+++++.++.
T Consensus 114 ~~~~~~~~~~~-~~~~~~~~nd~~~d~~G~l~vtd 147 (319)
T d2dg1a1 114 ENGDNLQDIIE-DLSTAYCIDDMVFDSKGGFYFTD 147 (319)
T ss_dssp TTSCSCEEEEC-SSSSCCCEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEECC-CCCCCCCCCCEEEEECCCEEECC
T ss_conf 89963644426-77755587522677306532001
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=88.83 E-value=0.39 Score=20.48 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=42.5
Q ss_pred CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 278536657300999079989999958990999968889850157501257684899990899999999789
Q 000424 91 LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 91 H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~D 162 (1525)
....+. .++|.+++...++-...+.|..||.... ......-........+++++++.++++...+
T Consensus 38 ~~~~lE-----G~~~D~~G~Ly~~D~~~g~I~ri~p~g~--~~~~~~~~~~~~p~gla~~~dG~l~va~~~~ 102 (319)
T d2dg1a1 38 KGLQLE-----GLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGD 102 (319)
T ss_dssp SCCCEE-----EEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred CCCCCE-----ECEECCCCCEEEEECCCCEEEEEECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEECCC
T ss_conf 886747-----0789999999999779999999989999--5999994899870389999999999995689
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=88.06 E-value=0.44 Score=20.14 Aligned_cols=102 Identities=16% Similarity=-0.034 Sum_probs=45.7
Q ss_pred CEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEEE-CC----CCEEECCCEEEEEECCCCEEEEEECCCC
Q ss_conf 9699999389998999988-------9829999869990999995-27----8536657300999079989999958990
Q 000424 53 PIVNLACHPRLPVLYVAYA-------DGLIRAYNIHTYAVHYTLQ-LD----NTIKLLGAGAFAFHPTLEWLFVGDRRGT 120 (1525)
Q Consensus 53 ~V~sIafsP~g~~LaSGs~-------DgtIkIWDi~t~~~l~tL~-H~----~~V~l~~~~sVaFsPdg~~LvSgS~Dgt 120 (1525)
..-+++|+|+++++++... ++.|..||..+........ .. ..-. .+.|.+++..++++.....
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-----Gl~~~~dg~~l~vad~~~~ 93 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-----GCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-----EEEECSSSSEEEEEETTTE
T ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCE-----EEEEECCCCEEEEEECCCE
T ss_conf 97173996999999998754023452999999989999599997776556788530-----6999079998999977983
Q ss_pred EEEEECCCCCCEEEE-EECCC-CCCEEEEEECCCCCEEEEE
Q ss_conf 999968889850157-50125-7684899990899999999
Q 000424 121 LLAWDVSIERPSMIG-IIQVG-SQPITSVAWLPMLRLLVTL 159 (1525)
Q Consensus 121 IkVWDl~s~~~s~i~-~l~gH-~~~VtsIafsPdg~lLvSg 159 (1525)
+...|.......... ...+. ....+.+++++++.+.+|-
T Consensus 94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd 134 (314)
T d1pjxa_ 94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 134 (314)
T ss_dssp EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 99994777479997334324545787278988899899914
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=87.91 E-value=0.45 Score=20.08 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=43.0
Q ss_pred EEEEECCCCEEEEEEC-------CCCEEEEECCCCCCEEEEE--ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEE
Q ss_conf 0999079989999958-------9909999688898501575--01257684899990899999999789971578711
Q 000424 102 AFAFHPTLEWLFVGDR-------RGTLLAWDVSIERPSMIGI--IQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171 (1525)
Q Consensus 102 sVaFsPdg~~LvSgS~-------DgtIkVWDl~s~~~s~i~~--l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr 171 (1525)
.++|.++|..+++... +++|..||..+........ .......-..+.|++++..++.+.....+...+..
T Consensus 22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~ 100 (314)
T d1pjxa_ 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD 100 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred EEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 7399699999999875402345299999998999959999777655678853069990799989999779839999477
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.79 E-value=0.58 Score=19.29 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=12.4
Q ss_pred EEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 09990799899999589909999688
Q 000424 102 AFAFHPTLEWLFVGDRRGTLLAWDVS 127 (1525)
Q Consensus 102 sVaFsPdg~~LvSgS~DgtIkVWDl~ 127 (1525)
.+++.+++..+++-.....|++||.+
T Consensus 27 gvavd~dg~i~VaD~~n~rI~v~d~~ 52 (279)
T d1q7fa_ 27 GVAVNAQNDIIVADTNNHRIQIFDKE 52 (279)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred EEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 79994999899997998989999699
|